Citrus Sinensis ID: 006633
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 637 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPH9 | 633 | Probable methyltransferas | yes | no | 0.982 | 0.988 | 0.698 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.976 | 0.985 | 0.686 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.956 | 0.953 | 0.574 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.946 | 0.952 | 0.578 | 0.0 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.921 | 0.952 | 0.556 | 0.0 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.913 | 0.937 | 0.555 | 0.0 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.811 | 0.846 | 0.530 | 1e-171 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.855 | 0.903 | 0.483 | 1e-154 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.891 | 0.946 | 0.440 | 1e-146 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.794 | 0.843 | 0.446 | 1e-135 |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/634 (69%), Positives = 526/634 (82%), Gaps = 8/634 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+K
Sbjct: 298 -NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRK 356
Query: 359 LIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNI 416
L+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S I
Sbjct: 357 LVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEI 416
Query: 417 KEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPG 476
KE+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ G
Sbjct: 417 KEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETG 476
Query: 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMST 536
RYRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCEAMST
Sbjct: 477 RYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMST 536
Query: 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME 596
YPRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K+K ITD M+
Sbjct: 537 YPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQ 596
Query: 597 WEGRIADHENGPRQREKILFANKKYWTAPAPDQN 630
WEGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 597 WEGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/631 (68%), Positives = 510/631 (80%), Gaps = 9/631 (1%)
Query: 10 LSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAK 69
+ I+ +TK ANLY +TLV +LC YL G+WQ++ RAA S PC +
Sbjct: 4 FTRISSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSD---GTPCEGFTRP 60
Query: 70 ASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRER 129
ST +LDF AHH DPPP P C E+ PCED RSLKF R+RL YR+R
Sbjct: 61 NSTK-DLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQR 119
Query: 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFS 189
HCPE+ E+LKCR+PAP+GY PFRWP SR AW+ANVPH ELTVEKKNQNWVR++ DRF
Sbjct: 120 HCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFW 179
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
FPGGGTMFPRGADAYIDDIG+LI+L DGSIRTAIDTGCGVAS+GAYL+SRNI +SFAPR
Sbjct: 180 FPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPR 239
Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR 309
DTHEAQVQFALERGVPA+IG+MA+IRLPYPSRAFD+AHCSRCLIPWGQ DG YL+EVDR
Sbjct: 240 DTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQ-NDGAYLMEVDR 298
Query: 310 VLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQ 369
VLRPGGYWILSGPP+NW+ WKGW RT +DL +EQ IE +ARSLCWKK++Q+ DLAIWQ
Sbjct: 299 VLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQ 358
Query: 370 KPTNHVHCIANRRVFKKPRFCKA-QDPDMAWYTKMETCLTPLPEV---SNIKEIAGGQLT 425
KP NH+ C R V K P FC+ QDPDMAWYTKM++CLTPLPEV ++K +AGG++
Sbjct: 359 KPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVE 418
Query: 426 KWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMN 485
KWP RLNAIPPRVN+GA++ +T E F E+T LWK+RV+YYK +DYQL + GRYRNL+DMN
Sbjct: 419 KWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMN 478
Query: 486 AYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIH 545
AYLGGFAAAL DDP+WVMN VPVEAK+NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IH
Sbjct: 479 AYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIH 538
Query: 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHE 605
ADS+F+LY+ +CE E++LLEMDRILRP G VIIRDDVD+L+K+K +T G+EWEGRIADHE
Sbjct: 539 ADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHE 598
Query: 606 NGPRQREKILFANKKYWTAPAPDQNQGTHTA 636
GP +REKI +A K+YWT PAPD+++ +A
Sbjct: 599 KGPHEREKIYYAVKQYWTVPAPDEDKNNTSA 629
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/639 (57%), Positives = 455/639 (71%), Gaps = 30/639 (4%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
S+ + K L I V+ LC + Y+ G WQ + TS S + + C TS
Sbjct: 7 SHSLAEAKRKRLTWILCVSGLCILSYVLGSWQTN----TVPTSSSEAYSRMGCDETSTTT 62
Query: 71 STN----------------------LNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENV 108
+ LDF +HH+ + T V Y PCD E
Sbjct: 63 RAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKL-ELKITNQTVKYFEPCDMSLSEYT 121
Query: 109 PCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPH 168
PCED R +FDR+ + YRERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PH
Sbjct: 122 PCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPH 181
Query: 169 KELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG 228
KEL++EK QNW++ +G+RF FPGGGTMFPRGADAYIDDI +LI L DG+IRTAIDTGCG
Sbjct: 182 KELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCG 241
Query: 229 VASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288
VAS+GAYL+ R+I+A+SFAPRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHC
Sbjct: 242 VASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHC 301
Query: 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 348
SRCLIPW Q DGLYL EVDRVLRPGGYWILSGPP+NW+ +WKGW R+ EDLK EQ+ IE
Sbjct: 302 SRCLIPWFQ-NDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIE 360
Query: 349 TIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD-PDMAWYTKMETCL 407
ARSLCWKK+ +K DL+IWQKP NHV C +RV K P C D PD AWY +E+C+
Sbjct: 361 DAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCV 420
Query: 408 TPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKS 467
TPLPE ++ E AGG L WP R A+PPR+ G + + AE FRED +WK+R++YYK
Sbjct: 421 TPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQ 480
Query: 468 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTY 527
+ +L++ GR+RN++DMNAYLGGFAAA++ P WVMN VPV+A+ TLGVI+ERG IGTY
Sbjct: 481 IMPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTY 539
Query: 528 QNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVK 587
Q+WCE STYPRTYDLIHA +FS+Y++RC++ +LLEMDRILRPEG+V+ RD V++L K
Sbjct: 540 QDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTK 599
Query: 588 IKSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 626
I+SIT+GM W+ RI DHE GP EKIL A K YWT P+
Sbjct: 600 IQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/622 (57%), Positives = 458/622 (73%), Gaps = 19/622 (3%)
Query: 16 KTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTS-------- 67
+ + L I V+ LC +FY+ G WQ A T PSSI + + C + S
Sbjct: 13 EARRKKLTLILGVSGLCILFYVLGAWQ-------ANTVPSSI-SKLGCETQSNPSSSSSS 64
Query: 68 AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
+ +S + LDF +H+Q + T + Y PC+ E PCED R +FDR+ + YR
Sbjct: 65 SSSSESAELDFKSHNQI-ELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYR 123
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PHKEL+VEK QNW++ +GDR
Sbjct: 124 ERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDR 183
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFA 247
F FPGGGTMFPRGADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYL+ R+I+AVSFA
Sbjct: 184 FRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFA 243
Query: 248 PRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEV 307
PRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHCSRCLIPW + DGLYL+EV
Sbjct: 244 PRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFK-NDGLYLMEV 302
Query: 308 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAI 367
DRVLRPGGYWILSGPP+NW+ +W+GW RT EDLK EQ+ IE +A+SLCWKK+ +K DL+I
Sbjct: 303 DRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSI 362
Query: 368 WQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKW 427
WQKP NH+ C ++ K P C + + D AWY +ETC+TPLPE +N + AGG L W
Sbjct: 363 WQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDW 422
Query: 428 PERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAY 487
P+R A+PPR+ RG + + AE FRED +WK+R+ +YK + +L+ GR+RN++DMNA+
Sbjct: 423 PDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAF 481
Query: 488 LGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHAD 547
LGGFAA+++ P WVMN VPV+A+ TLGVIYERGLIGTYQ+WCE STYPRTYD+IHA
Sbjct: 482 LGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAG 541
Query: 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 607
+FSLY+ RC++ +LLEMDRILRPEG+V++RD+V+ L K++ I GM+W+ +I DHE G
Sbjct: 542 GLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKG 601
Query: 608 PRQREKILFANKKYWTAPAPDQ 629
P EKIL A K YWT D+
Sbjct: 602 PFNPEKILVAVKTYWTGQPSDK 623
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/604 (55%), Positives = 429/604 (71%), Gaps = 17/604 (2%)
Query: 25 ITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNL--NLDFSAHH 82
I +V LC FY+ G WQ S G + S+ T++ A N+ +L+F HH
Sbjct: 18 IFIVFSLCCFFYILGAWQRS-GFGKG--------DSIALEMTNSGADCNIVPSLNFETHH 68
Query: 83 QAPDP---PPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLK 139
A+V PCD +Y + PC+D R++ F RD +IYRERHC + E L
Sbjct: 69 AGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLH 128
Query: 140 CRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPR 199
C +PAP GY PF WP+SR + YAN P+K LTVEK QNW++++GD F FPGGGT FP+
Sbjct: 129 CLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQ 188
Query: 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
GAD YID + +I +++G++RTA+DTGCGVASWGAYL SRN+ A+SFAPRD+HEAQVQFA
Sbjct: 189 GADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFA 248
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWIL 319
LERGVPA+IGV+ +I+LPYP+RAFDMAHCSRCLIPWG DG+YL+EVDRVLRPGGYWIL
Sbjct: 249 LERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGA-NDGMYLMEVDRVLRPGGYWIL 307
Query: 320 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIA 379
SGPP+NW+ ++K W R EDL+ EQ IE A+ LCW+K + ++AIWQK N C
Sbjct: 308 SGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEAC-R 366
Query: 380 NRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVN 439
+R+ + FCK D D WY KME C+TP PE S+ E+AGG+L +P+RLNA+PPR++
Sbjct: 367 SRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRIS 426
Query: 440 RGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP 499
G++ GVT + + +D WKK V YK ++ L GRYRN++DMNA GGFAAAL
Sbjct: 427 SGSISGVTVDAYEDDNRQWKKHVKAYKRIN-SLLDTGRYRNIMDMNAGFGGFAAALESQK 485
Query: 500 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEM 559
LWVMN VP A+ N LGV+YERGLIG Y +WCEA STYPRTYDLIHA+ +FSLYK++C
Sbjct: 486 LWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNA 545
Query: 560 EDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619
+D+LLEMDRILRPEG+VIIRDDVD L+K+K I GM W+ ++ DHE+GP EK+L A K
Sbjct: 546 DDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVK 605
Query: 620 KYWT 623
+YW
Sbjct: 606 QYWV 609
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/607 (55%), Positives = 424/607 (69%), Gaps = 25/607 (4%)
Query: 24 SITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQ 83
S+ +V LC FYL G WQ S G + + I C+ +LDF HH
Sbjct: 18 SLLVVVGLCCFFYLLGAWQKS-GFGKGDSIAMEITKQAQCTDIVT------DLDFEPHHN 70
Query: 84 A------PDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTEL 137
DP P + PCD K + PC++ R++KF R+ +IYRERHCP E
Sbjct: 71 TVKIPHKADPKPVSFK-----PCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEK 125
Query: 138 LKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMF 197
L+C VPAP GY PF WP+SR + YAN P K LTVEK QNWV+FQG+ F FPGGGTMF
Sbjct: 126 LRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMF 185
Query: 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQ 257
P+GADAYI+++ +I +KDGS+RTA+DTGCGVASWGAY++ RN+L +SFAPRD HEAQVQ
Sbjct: 186 PQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQ 245
Query: 258 FALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYW 317
FALERGVPA+I V+ SI LPYP+RAFDMA CSRCLIPW +G YL+EVDRVLRPGGYW
Sbjct: 246 FALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPW-TANEGTYLMEVDRVLRPGGYW 304
Query: 318 ILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHC 377
+LSGPP+NW++ K WNRT +L +EQ IE IA SLCW+K +K D+AI++K N C
Sbjct: 305 VLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSC 364
Query: 378 IANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPR 437
+ V CK +D D WY ++ETC+TP P+VSN +E+AGG+L K+PERL A+PP
Sbjct: 365 DRSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPS 420
Query: 438 VNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD 497
+++G ++GV E ++ED LWKKRVT YK ++ +L RYRN++DMNA LGGFAAAL
Sbjct: 421 ISKGLINGVDEESYQEDINLWKKRVTGYKRIN-RLIGSTRYRNVMDMNAGLGGFAAALES 479
Query: 498 DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRC 557
WVMN +P K NTL V+YERGLIG Y +WCE STYPRTYD IHA +FSLY+ C
Sbjct: 480 PKSWVMNVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSC 538
Query: 558 EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFA 617
++ED+LLE DRILRPEG VI RD+VD+L ++ I DGM W+ ++ DHE+GP EKIL A
Sbjct: 539 KLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVA 598
Query: 618 NKKYWTA 624
K+YW A
Sbjct: 599 TKQYWVA 605
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 601 bits (1550), Expect = e-171, Method: Compositional matrix adjust.
Identities = 278/524 (53%), Positives = 367/524 (70%), Gaps = 7/524 (1%)
Query: 96 YIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE-KTELLKCRVPAPHGYTVPFRW 154
Y P C + +PC D + ++ +R RERHCP+ E +C VP P GY PF W
Sbjct: 90 YFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPW 149
Query: 155 PESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL 214
PESR++AW+ NVP K L KK QNWVR +GDRF FPGGGT FP G Y+D I ++ L
Sbjct: 150 PESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPL 209
Query: 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274
GSIRT +D GCGVAS+GA+L++ IL +S APRD HEAQVQFALERG+PA++GV+++
Sbjct: 210 ASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTY 269
Query: 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWN 334
+LPYPSR+FDM HCSRCL+ W Y DGLYL+EVDRVLRP GYW+LSGPPV +K
Sbjct: 270 KLPYPSRSFDMVHCSRCLVNWTSY-DGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQK 328
Query: 335 RTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD 394
R +++L+++ + + R LCW+K+ + + IW+KP+NH+ C + K P C + D
Sbjct: 329 RDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSD 388
Query: 395 PDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFRED 454
PD AWY +ME C+TPLP+V++ + L WPERLN + PR+ G++ G T F+ D
Sbjct: 389 PDAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHV-PRMKTGSIQGTTIAGFKAD 444
Query: 455 TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINT 514
T LW++RV YY + ++ G+YRN++DMNA LGGFAAAL+ P+WVMN VP + K NT
Sbjct: 445 TNLWQRRVLYYDT-KFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNT 503
Query: 515 LGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEG 574
LGV+Y+RGLIGTY NWCEA+STYPRTYDLIHA+ +FSLY D+C++ D+LLEM RILRPEG
Sbjct: 504 LGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEG 563
Query: 575 SVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618
+VIIRD D+LVK+K+IT+ M W G + +N IL +
Sbjct: 564 AVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIVD 607
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/560 (48%), Positives = 366/560 (65%), Gaps = 15/560 (2%)
Query: 68 AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
AK T A + P P + P C ++ + PC D R K+ RL +
Sbjct: 47 AKDVTRTTTKAVASPKEPTATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFL 106
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCP E +C +P P GY P RWP+SR+ WY NVP+ + +K NQ+W++ +GD+
Sbjct: 107 ERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDK 166
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSF 246
F FPGGGTMFPRG Y+D + LI +KDG++RTAIDTGCGVASWG L+ R IL++S
Sbjct: 167 FHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSL 226
Query: 247 APRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIE 306
APRD HEAQVQFALERG+PA++G++++ RLP+PS AFDMAHCSRCLIPW ++ G+YL+E
Sbjct: 227 APRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFG-GIYLLE 285
Query: 307 VDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLA 366
+ R++RPGG+W+LSGPPVN+ W+GWN T ED KS+ N ++++ S+C+KK QK D+A
Sbjct: 286 IHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIA 345
Query: 367 IWQKPTNHVHC---IANRRVFKKPRFCKAQDPDMAWYTKMETCLT-PLPEVSNIKEIAGG 422
+WQK ++ C IA P+ + +PD AWYT + C+ P P+V K+ G
Sbjct: 346 VWQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV---KKSGLG 401
Query: 423 QLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLL 482
+ KWPERL+ P R+ G V G +A + D WK RV +YK V L + RN++
Sbjct: 402 SIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGT-DKIRNVM 458
Query: 483 DMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYD 542
DMN GGF+AAL++DP+WVMN V + N+L V+++RGLIGTY +WCEA STYPRTYD
Sbjct: 459 DMNTVYGGFSAALIEDPIWVMNVVSSYSA-NSLPVVFDRGLIGTYHDWCEAFSTYPRTYD 517
Query: 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIA 602
L+H DS+F+L RCEM+ +LLEMDRILRP G VIIR+ + I ++ G+ W R
Sbjct: 518 LLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRRE 577
Query: 603 DHENGPRQREKILFANKKYW 622
+ E + EKIL KK W
Sbjct: 578 ETEYAVKS-EKILVCQKKLW 596
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/606 (44%), Positives = 370/606 (61%), Gaps = 38/606 (6%)
Query: 22 LYSITLVTILCTI-FYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSA 80
L L+ +LC + FYL G++ + S + S++L++D S
Sbjct: 18 LPKTVLLILLCGLSFYLGGLYCGK--------------NIIEVSDVAKAESSSLDVDDSL 63
Query: 81 HHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKC 140
+ C Y + PC D + K+ RL + ERHCP + +C
Sbjct: 64 Q----------VKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQC 113
Query: 141 RVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRG 200
VP P GY P RWP+S+ WY NVP+ + +K NQNW+R +G++F FPGGGTMFP G
Sbjct: 114 LVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHG 173
Query: 201 ADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
AY+D + LI +KDG+IRTAIDTGCGVASWG L+ R IL VS APRD HEAQVQFA
Sbjct: 174 VSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFA 233
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWIL 319
LERG+PA++G++++ RLP+PS +FDMAHCSRCLIPW ++ G+YL+EV R+LRPGG+W+L
Sbjct: 234 LERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFG-GVYLLEVHRILRPGGFWVL 292
Query: 320 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHV--HC 377
SGPPVN+E+ WKGW+ T E+ +S ++ + S+C+K +K D+A+WQK +++ +
Sbjct: 293 SGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNK 352
Query: 378 IANRRVFKKPRFCKAQDPDMAWYTKMETC-LTPLPEVSNIKEIAGGQLTKWPERLNAIPP 436
++N P+ + +PD AWYT + C + P P+ +K+ KWPERL+ P
Sbjct: 353 LSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPK---LKKTDLESTPKWPERLHTTPE 409
Query: 437 RVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV 496
R++ V G +F+ D + WK R +YK + + + RN++DMN GG AAALV
Sbjct: 410 RIS--DVPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGS-DKIRNVMDMNTAYGGLAAALV 466
Query: 497 DDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDR 556
+DPLWVMN V A NTL V+++RGLIGTY +WCEA STYPRTYDL+H D +F+ R
Sbjct: 467 NDPLWVMNVVSSYAA-NTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQR 525
Query: 557 CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILF 616
C+M+ V+LEMDRILRP G IIR+ I S+ + W R E+ EK+L
Sbjct: 526 CDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQTESA-SANEKLLI 584
Query: 617 ANKKYW 622
KK W
Sbjct: 585 CQKKLW 590
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/535 (44%), Positives = 335/535 (62%), Gaps = 29/535 (5%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C + V ++PCED R+ + R+ YRERHCP E C +P P GY +P WPES
Sbjct: 84 CPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLH 143
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSI 219
W+AN+P+ ++ K +Q W++ +G+ F+FPGGGTMFP GA YI+ + + I L G++
Sbjct: 144 KIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTL 203
Query: 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
RTA+D GCGVAS+G L+S+ ILA+SFAPRD+H++Q+QFALERGVPA + ++ + RLP+P
Sbjct: 204 RTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFP 263
Query: 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 339
+ +FD+ HCSRCLIP+ Y + Y IEVDR+LRPGGY ++SGPPV W K W
Sbjct: 264 AYSFDLMHCSRCLIPFTAY-NATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW------ 316
Query: 340 LKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAW 399
++ +AR+LC++ + + IW+KP C+ ++ F ++ P AW
Sbjct: 317 -----ADLQAVARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAW 370
Query: 400 YTKMETCLTPLPEVSNIK-EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALW 458
Y K++ C+T S++K E A G ++KWPERL +P +R V ++F D W
Sbjct: 371 YFKLKRCVT---RPSSVKGEHALGTISKWPERLTKVP---SRAIVMKNGLDVFEADARRW 424
Query: 459 KKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV 517
+RV YY+ S++ +L P RN++DMNA+ GGFAA L DP+WVMN +P + TL V
Sbjct: 425 ARRVAYYRDSLNLKLKSP-TVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPL-TLDV 482
Query: 518 IYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY------KDRCEMEDVLLEMDRILR 571
IY+RGLIG Y +WCE STYPRTYD IH I SL K RC + D+++EMDRILR
Sbjct: 483 IYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILR 542
Query: 572 PEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 626
PEG V+IRD ++L K+ + + W I + E REKIL A K W P+
Sbjct: 543 PEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 637 | ||||||
| 224130124 | 629 | predicted protein [Populus trichocarpa] | 0.971 | 0.984 | 0.774 | 0.0 | |
| 255541466 | 627 | ATP binding protein, putative [Ricinus c | 0.968 | 0.984 | 0.762 | 0.0 | |
| 224063975 | 622 | predicted protein [Populus trichocarpa] | 0.967 | 0.990 | 0.748 | 0.0 | |
| 449480132 | 635 | PREDICTED: probable methyltransferase PM | 0.982 | 0.985 | 0.724 | 0.0 | |
| 357507093 | 638 | hypothetical protein MTR_7g076170 [Medic | 0.973 | 0.971 | 0.715 | 0.0 | |
| 449432189 | 640 | PREDICTED: probable methyltransferase PM | 0.978 | 0.973 | 0.720 | 0.0 | |
| 297814267 | 633 | dehydration-responsive family protein [A | 0.982 | 0.988 | 0.706 | 0.0 | |
| 353685478 | 634 | putative methyltransferase [Phaseolus vu | 0.951 | 0.955 | 0.723 | 0.0 | |
| 15236921 | 633 | putative methyltransferase PMT15 [Arabid | 0.982 | 0.988 | 0.698 | 0.0 | |
| 356530107 | 622 | PREDICTED: probable methyltransferase PM | 0.932 | 0.954 | 0.721 | 0.0 |
| >gi|224130124|ref|XP_002320758.1| predicted protein [Populus trichocarpa] gi|222861531|gb|EEE99073.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/622 (77%), Positives = 545/622 (87%), Gaps = 3/622 (0%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
SY+ K K NLY I L I CTIFYL G +Q S G + + + SSI PC+
Sbjct: 7 SYLPLKAKKLNLYKIILTIIPCTIFYLVGFYQSSRGNVPVSNTSSSINEVFPCAPPDHNT 66
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
+T LDF AHH APDPP +AR ++PPCDPKY E+ PCED RSLKFDRDRL+YRERH
Sbjct: 67 TT---LDFEAHHFAPDPPLRVARAHHLPPCDPKYSEHTPCEDVERSLKFDRDRLVYRERH 123
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPE E+LKCRVPAP+GY VPFRWPESR+FAWYANVPHKELTVEKKNQNWV +G R F
Sbjct: 124 CPESHEILKCRVPAPYGYKVPFRWPESREFAWYANVPHKELTVEKKNQNWVHVEGKRLRF 183
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNILAVSFAPRD
Sbjct: 184 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILAVSFAPRD 243
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRV 310
TH +QVQFALERGVPALIG++ASIRLPYPSR+FDMAHCSRCLIPWGQYADG YLIEVDR+
Sbjct: 244 THVSQVQFALERGVPALIGIIASIRLPYPSRSFDMAHCSRCLIPWGQYADGQYLIEVDRI 303
Query: 311 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 370
LRPGGYWILSGPP+NWE+HW+GWNRT EDL +EQ+ IE +ARSLCWKKL+Q+KD+AIWQK
Sbjct: 304 LRPGGYWILSGPPINWEAHWEGWNRTREDLGAEQSQIEKVARSLCWKKLVQRKDIAIWQK 363
Query: 371 PTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPER 430
PTNH+HC NR+VFK+P FCK+Q+PDMAWYTKMETCLTPLPEVSNI++IAGGQL KWPER
Sbjct: 364 PTNHIHCKVNRKVFKRPLFCKSQNPDMAWYTKMETCLTPLPEVSNIRDIAGGQLAKWPER 423
Query: 431 LNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG 490
LNAIPPR++RG+++G+TA F E++ LWK+RV YYK +DYQLAQ GRYRNLLDMNA+LGG
Sbjct: 424 LNAIPPRISRGSLEGITAGNFIENSELWKRRVAYYKKIDYQLAQTGRYRNLLDMNAHLGG 483
Query: 491 FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIF 550
FAAALVDDPLWVMN VPV+AK NTLGVI+ERGLIGTYQNWCEAMSTYPRTYD IHADS+F
Sbjct: 484 FAAALVDDPLWVMNVVPVQAKTNTLGVIFERGLIGTYQNWCEAMSTYPRTYDFIHADSVF 543
Query: 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQ 610
SLY+DRC++ED+LLEMDRILRPEGSV++RDDVDIL+K+KSI D M+W+GRIADHE+ P Q
Sbjct: 544 SLYEDRCDVEDILLEMDRILRPEGSVVMRDDVDILMKVKSIIDVMQWDGRIADHESSPHQ 603
Query: 611 REKILFANKKYWTAPAPDQNQG 632
REKILFA KKYWTAP P QNQG
Sbjct: 604 REKILFATKKYWTAPKPGQNQG 625
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541466|ref|XP_002511797.1| ATP binding protein, putative [Ricinus communis] gi|223548977|gb|EEF50466.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/627 (76%), Positives = 538/627 (85%), Gaps = 10/627 (1%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
S++ F+TK ANLY IT+ TILCT+FY G +Q+S G + +TS SSI P
Sbjct: 6 SFLAFRTKKANLYKITVTTILCTVFYFIGFYQNSRGRVPLSTSRSSIFDCAP-------Q 58
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
N LDF HHQ PDPP ARV ++PPCDP+ E PCED RSL+FDRDRL+YRERH
Sbjct: 59 VLNTTLDFDPHHQLPDPPLKAARVLHLPPCDPELSEYTPCEDRQRSLQFDRDRLVYRERH 118
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPEK ELLKCRVPAP GY VPFRWP SR++ W+ANVPHKELTVEKKNQNWVRF+GDRF F
Sbjct: 119 CPEKKELLKCRVPAPFGYRVPFRWPVSREYGWFANVPHKELTVEKKNQNWVRFEGDRFRF 178
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVAS+GAYL+SRNIL +SFAPRD
Sbjct: 179 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASFGAYLLSRNILTMSFAPRD 238
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRV 310
THEAQVQFALERGVPALIGV AS+R PYPSRAFDMAHCSRCLIPW Y DG YLIEVDR+
Sbjct: 239 THEAQVQFALERGVPALIGVFASMRQPYPSRAFDMAHCSRCLIPWATY-DGQYLIEVDRM 297
Query: 311 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 370
LRPGGYW+LSGPP+NWE+HWKGW+RT EDL EQ IET+A+SLCWKKL+QK DLAIWQK
Sbjct: 298 LRPGGYWVLSGPPINWENHWKGWSRTPEDLNEEQTSIETVAKSLCWKKLVQKDDLAIWQK 357
Query: 371 PTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPER 430
PTNH+HC ANR+VFK+P FC++QDPD AWYTK+ETCLTPLPEVSNI++IAGGQL WPER
Sbjct: 358 PTNHIHCKANRKVFKQPLFCESQDPDRAWYTKLETCLTPLPEVSNIRDIAGGQLANWPER 417
Query: 431 LNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG 490
L AIPPR++ G+++G+TAE F E+T LWKKRV +YK+VD+QLA+ GRYRN+LDMNAYLGG
Sbjct: 418 LTAIPPRISSGSLNGITAETFTENTELWKKRVDHYKAVDHQLAEQGRYRNILDMNAYLGG 477
Query: 491 FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIF 550
FAAALVDDP WVMN VPVE INTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADS+F
Sbjct: 478 FAAALVDDPAWVMNVVPVETDINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSVF 537
Query: 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQ 610
SLYKDRC+MED+LLEMDRILRPEGSVIIRDDVD+L+K+KSI D M+W+ RIADHE P +
Sbjct: 538 SLYKDRCDMEDLLLEMDRILRPEGSVIIRDDVDVLLKVKSIVDVMQWDARIADHERSPHE 597
Query: 611 REKILFANKKYWT--APAPDQNQGTHT 635
REKILFA K+YWT APAP QNQ T
Sbjct: 598 REKILFAVKQYWTAPAPAPHQNQEQST 624
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063975|ref|XP_002301329.1| predicted protein [Populus trichocarpa] gi|222843055|gb|EEE80602.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/620 (74%), Positives = 542/620 (87%), Gaps = 4/620 (0%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
SY+TFK K NLY IT+ ILCT+FYLAG +Q+S G I T+ SS +T+ C+ T+
Sbjct: 7 SYLTFKAKKLNLYKITITIILCTVFYLAGFYQNSRGTISINTTSSSSITAFRCAPTNHST 66
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
+T LDF+A H A DP P +AR + PPCDPKY E PCED RSL+FDRDRL+YRERH
Sbjct: 67 TT---LDFAARHFAQDPKPPVAREHHFPPCDPKYSEYTPCEDVDRSLRFDRDRLVYRERH 123
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPE E+LKCRVP P+GY +PF WPESR+ AWYANVPHK+LTVEKKNQNWVR +G+R F
Sbjct: 124 CPESHEILKCRVPPPYGYKMPFSWPESRELAWYANVPHKDLTVEKKNQNWVRVEGERLRF 183
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNIL VSFAPRD
Sbjct: 184 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILTVSFAPRD 243
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRV 310
TH +QVQFALERGVPALIG++ASIRLPYPSR+FDMAHCSRCL+PWGQY DG YLIE+DR+
Sbjct: 244 THVSQVQFALERGVPALIGIIASIRLPYPSRSFDMAHCSRCLVPWGQY-DGQYLIEIDRI 302
Query: 311 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 370
LRPGGYWILSGPP+NWE+HWKGWNRT EDL++EQ+ IE +A+SLCW+KL+Q+ D+AIWQK
Sbjct: 303 LRPGGYWILSGPPINWETHWKGWNRTREDLRAEQSQIERVAKSLCWRKLVQRNDIAIWQK 362
Query: 371 PTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPER 430
PTNHVHC NR+VFK+P FCK+Q+PDMAWYTKMETCLTPLPEV++I++IAGGQL KWPER
Sbjct: 363 PTNHVHCKVNRKVFKRPLFCKSQNPDMAWYTKMETCLTPLPEVASIRDIAGGQLAKWPER 422
Query: 431 LNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG 490
LNAIPPR++ G ++G+ A F E++ LWKKRV YYK +DYQLA+ GRYRNLLDMNA+LGG
Sbjct: 423 LNAIPPRISSGGLEGLAANSFVENSELWKKRVAYYKKIDYQLAKTGRYRNLLDMNAHLGG 482
Query: 491 FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIF 550
FAAALVDDP+WVMN VPV+AK+NTLGVI++RGLIGTYQNWCEAMSTYPRTYD IHADS+F
Sbjct: 483 FAAALVDDPVWVMNVVPVQAKMNTLGVIFQRGLIGTYQNWCEAMSTYPRTYDFIHADSLF 542
Query: 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQ 610
SLY++RC +ED+LLEMDRILRPEGSVIIRDDVDIL+ +K+I D M+W+GRI DHE+ P +
Sbjct: 543 SLYENRCGVEDILLEMDRILRPEGSVIIRDDVDILLNVKAIMDAMQWDGRITDHESSPHE 602
Query: 611 REKILFANKKYWTAPAPDQN 630
REKILFA KKYWTAP PDQ+
Sbjct: 603 REKILFATKKYWTAPRPDQD 622
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480132|ref|XP_004155808.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/631 (72%), Positives = 532/631 (84%), Gaps = 5/631 (0%)
Query: 10 LSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGA--IRAATSPSSILTSVPCSSTS 67
++ +FK NLY+ITLV ILC +FYL G+WQ S G I A + + ++V + +
Sbjct: 3 VNNFSFKPGRLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIEN 62
Query: 68 AKASTNLNLDFSAHHQAPDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIY 126
+ A+T ++LDF+AHH A D P AR PPCD K E PCED RSLKFDRDRLIY
Sbjct: 63 STATTVIDLDFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIY 122
Query: 127 RERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGD 186
RERHCPE E+LKCRVPAP GY VPFRWPESR FAW++NVPHKELTVEKKNQNWVRF+ D
Sbjct: 123 RERHCPEAGEILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFEND 182
Query: 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSF 246
RF FPGGGTMFPRGADAYIDDIGKLINL DGSIRTA+DTGCGVASWGAYL+SRNI+ +SF
Sbjct: 183 RFRFPGGGTMFPRGADAYIDDIGKLINLADGSIRTAVDTGCGVASWGAYLLSRNIVTMSF 242
Query: 247 APRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIE 306
APRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPW Q +DG+YLIE
Sbjct: 243 APRDTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQ-SDGMYLIE 301
Query: 307 VDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLA 366
VDR+LRPGGYW+LSGPP+NWE+HWKGWNRTT DL++EQ+ IE +A+SLCWKKL QK D+A
Sbjct: 302 VDRILRPGGYWVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQKDDIA 361
Query: 367 IWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTK 426
IWQKPTNH+HC NR+VFK P FC+ QDPD+AWYTKME CLTPLPEVS++KE AGGQL
Sbjct: 362 IWQKPTNHIHCKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGGQLLN 421
Query: 427 WPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNA 486
WPERL ++PPR++ G++ +T + F E+T LW+KRV +YK++D QLA+PGRYRNLLDMN+
Sbjct: 422 WPERLTSVPPRISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLLDMNS 481
Query: 487 YLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHA 546
+LGGFAAA+VDDPLWVMN VPVEA NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IH
Sbjct: 482 FLGGFAAAIVDDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHG 541
Query: 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHEN 606
DS+FS+YK RCEMED+LLEMDRILRP+GSVI+RDDVD+LV++KSI + M+WE RIADHE
Sbjct: 542 DSVFSMYKGRCEMEDILLEMDRILRPQGSVILRDDVDVLVEVKSIAEAMQWECRIADHEK 601
Query: 607 GPRQREKILFANKKYWTAPA-PDQNQGTHTA 636
GP QREKIL A K+YWTA A ++NQ T+
Sbjct: 602 GPHQREKILVATKQYWTASATEEENQEKQTS 632
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507093|ref|XP_003623835.1| hypothetical protein MTR_7g076170 [Medicago truncatula] gi|124360854|gb|ABN08826.1| Generic methyltransferase [Medicago truncatula] gi|355498850|gb|AES80053.1| hypothetical protein MTR_7g076170 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/632 (71%), Positives = 530/632 (83%), Gaps = 12/632 (1%)
Query: 11 SYITFKTKHAN-----LYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSS------ILT 59
S+++ K N +Y +T LCT FY G+WQ+SP AA S ++ I
Sbjct: 4 SFLSIFNKKPNKPFSRIYFLTFTIFLCTFFYFLGLWQNSPTTTSAAISGNNHHSTTIIRP 63
Query: 60 SVPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKF 119
P ++ ++ +++ LDFSAHH PDPP T RVT+ P CD E PCEDT RSLKF
Sbjct: 64 DCPPANFTSTTTSSTTLDFSAHHNVPDPPETSERVTHAPVCDVALSEYTPCEDTQRSLKF 123
Query: 120 DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQN 179
R+ LIYRERHCPEK E+L+CR+PAP+GY VP RWPESR +AWYANVPHKELT+EKKNQN
Sbjct: 124 PRENLIYRERHCPEKEEVLRCRIPAPYGYRVPPRWPESRDWAWYANVPHKELTIEKKNQN 183
Query: 180 WVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR 239
WV F+GDRF FPGGGTMFPRGA AYIDDIGKLINLKDGS+RTA+DTGCGVASWGAYL+ R
Sbjct: 184 WVHFEGDRFRFPGGGTMFPRGAGAYIDDIGKLINLKDGSVRTALDTGCGVASWGAYLLPR 243
Query: 240 NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYA 299
+ILAVSFAPRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPWGQ
Sbjct: 244 DILAVSFAPRDTHEAQVQFALERGVPALIGVIASIRLPYPSRAFDMAHCSRCLIPWGQ-N 302
Query: 300 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 359
DG+YL EVDRVLRPGGYWILSGPP+NWESHWKGW RT EDL +EQ IE +A+SLCWKKL
Sbjct: 303 DGIYLTEVDRVLRPGGYWILSGPPINWESHWKGWERTREDLNAEQTSIERVAKSLCWKKL 362
Query: 360 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEI 419
+QK D+AIWQKPTNH+HC R+VFK FC A+DPD AWYTKM+TCLTPLPEV++IKE+
Sbjct: 363 VQKGDIAIWQKPTNHIHCKITRKVFKNRPFCDAKDPDSAWYTKMDTCLTPLPEVTDIKEV 422
Query: 420 AGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYR 479
+G L+ WPERL ++PPR++ G++DG+TAEMF+E+T LWKKRV YYK++DYQLA+PGRYR
Sbjct: 423 SGRGLSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYR 482
Query: 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPR 539
NLLDMNAYLGGFAAA++DDP+WVMN VPVEA+INTLGV+YERGLIGTYQNWCEAMSTYPR
Sbjct: 483 NLLDMNAYLGGFAAAMIDDPVWVMNVVPVEAEINTLGVVYERGLIGTYQNWCEAMSTYPR 542
Query: 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEG 599
TYD IHADS+F+LY+DRC +ED+L+EMDRILRP+GSVI+RDDVD+L+K+K D M+W+
Sbjct: 543 TYDFIHADSLFTLYEDRCNIEDILVEMDRILRPQGSVILRDDVDVLLKVKRFADAMQWDA 602
Query: 600 RIADHENGPRQREKILFANKKYWTAPAPDQNQ 631
RIADHE GP QREKIL A K+YWTAP P+QNQ
Sbjct: 603 RIADHEKGPHQREKILVAVKQYWTAPQPEQNQ 634
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432189|ref|XP_004133882.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/633 (72%), Positives = 529/633 (83%), Gaps = 10/633 (1%)
Query: 13 ITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGA--IRAATSPSSILTSVPCSSTSAKA 70
+FK NLY+ITLV ILC +FYL G+WQ S G I A + + ++V + ++ A
Sbjct: 6 FSFKPGRLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIENSTA 65
Query: 71 STNLNLDFSAHHQAPDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRER 129
+T ++LDF+AHH A D P AR PPCD K E PCED RSLKFDRDRLIYRER
Sbjct: 66 TTVIDLDFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIYRER 125
Query: 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFS 189
HCPE E+LKCRVPAP GY VPFRWPESR FAW++NVPHKELTVEKKNQNWVRF+ DRF
Sbjct: 126 HCPEAGEILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFENDRFR 185
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG-----VASWGAYLMSRNILAV 244
FPGGGTMFPRGADAYIDDIGKLINL DGSIRTA+DTG G VASWGAYL+SRNI+ +
Sbjct: 186 FPGGGTMFPRGADAYIDDIGKLINLADGSIRTAVDTGWGGRNGYVASWGAYLLSRNIVTM 245
Query: 245 SFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYL 304
SFAPRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPW Q +DG+YL
Sbjct: 246 SFAPRDTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQ-SDGMYL 304
Query: 305 IEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 364
IEVDR+LRPGGYW+LSGPP+NWE+HWKGWNRTT DL++EQ+ IE +A+SLCWKKL QK D
Sbjct: 305 IEVDRILRPGGYWVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQKDD 364
Query: 365 LAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQL 424
+AIWQKPTNH+HC NR+VFK P FC+ QDPD+AWYTKME CLTPLPEVS++KE AGGQL
Sbjct: 365 IAIWQKPTNHIHCKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGGQL 424
Query: 425 TKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDM 484
WPERL ++PPR++ G++ +T + F E+T LW+KRV +YK++D QLA+PGRYRNLLDM
Sbjct: 425 LNWPERLTSVPPRISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLLDM 484
Query: 485 NAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLI 544
N++LGGFAAA+VDDPLWVMN VPVEA NTLGVIYERGLIGTYQNWCEAMSTYPRTYD I
Sbjct: 485 NSFLGGFAAAIVDDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFI 544
Query: 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADH 604
H DS+FS+YK RCEMED+LLEMDRILRP+GSVI+RDDVD+LV++KSI + M+WE RIADH
Sbjct: 545 HGDSVFSMYKGRCEMEDILLEMDRILRPQGSVILRDDVDVLVEVKSIAEAMQWECRIADH 604
Query: 605 ENGPRQREKILFANKKYWTAPA-PDQNQGTHTA 636
E GP QREKIL A K+YWTA A ++NQ T+
Sbjct: 605 EKGPHQREKILVATKQYWTASATEEENQEKQTS 637
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814267|ref|XP_002875017.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297320854|gb|EFH51276.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/634 (70%), Positives = 528/634 (83%), Gaps = 8/634 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
MAN ++LS ++ + KH NLY + L+ ILC Y G+WQHS G I ++ + LTS
Sbjct: 1 MANYRWPSKLSKLSLRAKHTNLYRVILIAILCAASYFVGVWQHSGGGISRSSLSNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F+A H APDPPPT ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFAASHTAPDPPPTATAARVAQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCP+K E+L+CR+PAP+GYTV FRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPKKHEILRCRIPAPYGYTVSFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINL+DGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLRDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCWKK
Sbjct: 298 -NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWKK 356
Query: 359 LIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNI 416
L+Q++DLA+WQKPTNH+HC NR ++P FC PD AWYTK+ETCLTPLPEV S I
Sbjct: 357 LVQREDLAVWQKPTNHIHCKRNRIALRRPPFCHQTLPDQAWYTKLETCLTPLPEVTGSEI 416
Query: 417 KEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPG 476
KE+AGGQL +WPERLNA+PPR+ G+++G+T + +T W++RV+YYK D QLA+ G
Sbjct: 417 KEVAGGQLARWPERLNAVPPRIKSGSLEGITEDDLVSNTETWQRRVSYYKKYDQQLAETG 476
Query: 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMST 536
RYRNLLDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCE+MST
Sbjct: 477 RYRNLLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCESMST 536
Query: 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME 596
YPRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K K ITD M+
Sbjct: 537 YPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKAKKITDAMQ 596
Query: 597 WEGRIADHENGPRQREKILFANKKYWTAPAPDQN 630
WEGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 597 WEGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353685478|gb|AER13155.1| putative methyltransferase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/611 (72%), Positives = 514/611 (84%), Gaps = 5/611 (0%)
Query: 22 LYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCS---STSAKASTNLNLDF 78
LY +T T LCT+FYL G+W HSP ++ A ++ + + C S +N LDF
Sbjct: 23 LYLLTFTTFLCTLFYLLGLWHHSPPSLAAISAATHLAGRRNCPDPISNFLSTISNSTLDF 82
Query: 79 SAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELL 138
S+ H +PDP R + PPCD E PCED +RSLKF R+ LIYRERHCP + E L
Sbjct: 83 SSTHFSPDPEEG-TRAFHAPPCDATLAEYTPCEDVNRSLKFPREDLIYRERHCPVEAEAL 141
Query: 139 KCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFP 198
+CR+PAP GY VP RWPESR AW+ANVPHKELTVEKKNQNWVRF+GDRF FPGGGTMFP
Sbjct: 142 RCRIPAPFGYRVPLRWPESRDAAWFANVPHKELTVEKKNQNWVRFEGDRFRFPGGGTMFP 201
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RGA AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SR+ILAVSFAPRDTHEAQVQF
Sbjct: 202 RGASAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRDILAVSFAPRDTHEAQVQF 261
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318
ALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPWGQ +G+YL EVDRVLRPGGYWI
Sbjct: 262 ALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWGQ-NEGIYLTEVDRVLRPGGYWI 320
Query: 319 LSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCI 378
LSGPP+NWESHWKGW RT E LK EQ+ IE +A+SLCWKKL+QK DLAIWQKPTNH+HC
Sbjct: 321 LSGPPINWESHWKGWERTRESLKEEQDTIEKVAKSLCWKKLVQKGDLAIWQKPTNHIHCK 380
Query: 379 ANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRV 438
RRVFK FC A+DPD AWYTKMETCLTPLPEV+++ E++GG+L+ WPERL ++PPR+
Sbjct: 381 ITRRVFKNRPFCAAKDPDTAWYTKMETCLTPLPEVNDVSEVSGGELSNWPERLTSVPPRI 440
Query: 439 NRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD 498
+ G+++G+T +MF+E++ LWKKRV YYK++DYQLA+ GRYRNLLDMNAYLGGFAAAL+DD
Sbjct: 441 SSGSLNGITVDMFKENSELWKKRVAYYKTLDYQLAERGRYRNLLDMNAYLGGFAAALIDD 500
Query: 499 PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCE 558
P+WVMNTVPVEA++NTLG IYERGLIGTYQNWCEAMSTYPRTYD IH DS+FSLY++RC+
Sbjct: 501 PVWVMNTVPVEAELNTLGAIYERGLIGTYQNWCEAMSTYPRTYDFIHGDSVFSLYQNRCK 560
Query: 559 MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618
MED+LLEMDRILRP+GSVI+RDDVD+L+K+K+ D M+W+ RIADHE GP QREKI A
Sbjct: 561 MEDILLEMDRILRPQGSVILRDDVDVLLKVKNFADAMQWDSRIADHEKGPHQREKIFVAV 620
Query: 619 KKYWTAPAPDQ 629
K+YWTAP P Q
Sbjct: 621 KQYWTAPPPQQ 631
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236921|ref|NP_191984.1| putative methyltransferase PMT15 [Arabidopsis thaliana] gi|75267756|sp|Q9ZPH9.1|PMTF_ARATH RecName: Full=Probable methyltransferase PMT15 gi|4325339|gb|AAD17339.1| F15P23.1 gene product [Arabidopsis thaliana] gi|7267414|emb|CAB80884.1| hypothetical protein [Arabidopsis thaliana] gi|332656529|gb|AEE81929.1| putative methyltransferase PMT15 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/634 (69%), Positives = 526/634 (82%), Gaps = 8/634 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+K
Sbjct: 298 -NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRK 356
Query: 359 LIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNI 416
L+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S I
Sbjct: 357 LVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEI 416
Query: 417 KEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPG 476
KE+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ G
Sbjct: 417 KEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETG 476
Query: 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMST 536
RYRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCEAMST
Sbjct: 477 RYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMST 536
Query: 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME 596
YPRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K+K ITD M+
Sbjct: 537 YPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQ 596
Query: 597 WEGRIADHENGPRQREKILFANKKYWTAPAPDQN 630
WEGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 597 WEGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530107|ref|XP_003533625.1| PREDICTED: probable methyltransferase PMT15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/611 (72%), Positives = 518/611 (84%), Gaps = 17/611 (2%)
Query: 22 LYSITLVTILCTIFYLAGMWQHSPGAI---RAATSPSSILTSVPCSSTSAKASTNLNLDF 78
LY ++ T LCTI YL G+W H+P ++ + T+ S+ S+P L+F
Sbjct: 18 LYLLSFTTFLCTITYLLGLWHHAPPSLPSLVSTTAHSNCPNSIP------------TLNF 65
Query: 79 SAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELL 138
SA H +PDP AR Y PPCDP E PCED RSLKF R+ LIYRERHCP ELL
Sbjct: 66 SATHFSPDPQAP-ARDFYAPPCDPSLSEYTPCEDVQRSLKFPRENLIYRERHCPPAEELL 124
Query: 139 KCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFP 198
+CRVPAP GY VP RWPESR AW+ANVPHKELTVEKKNQNWVRF+GD+F FPGGGTMFP
Sbjct: 125 RCRVPAPFGYRVPLRWPESRDAAWFANVPHKELTVEKKNQNWVRFEGDQFRFPGGGTMFP 184
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RGA AYIDDIGKLINL+DGSIRTA+DTGCGVASWGAYL+SR+I+AVSFAPRDTHEAQVQF
Sbjct: 185 RGAGAYIDDIGKLINLEDGSIRTALDTGCGVASWGAYLLSRDIIAVSFAPRDTHEAQVQF 244
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318
ALERGVP LIGV+ASIRLPYPSR+FDMAHCSRCLIPWGQ +G+YL EVDRVLRPGGYWI
Sbjct: 245 ALERGVPGLIGVLASIRLPYPSRSFDMAHCSRCLIPWGQ-NEGIYLNEVDRVLRPGGYWI 303
Query: 319 LSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCI 378
LSGPP+NWE+HWKGW RT E+LK EQ+GIE +A+SLCWKKL+QK DLAIWQKPTNH+HC
Sbjct: 304 LSGPPINWENHWKGWERTRENLKEEQDGIEKVAKSLCWKKLVQKGDLAIWQKPTNHIHCK 363
Query: 379 ANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRV 438
R+V+K FC+A+DPD AWYTKM+TCLTPLPEV++I+E++GG+L+ WPERL ++PPR+
Sbjct: 364 ITRKVYKNRPFCEAKDPDTAWYTKMDTCLTPLPEVNDIREVSGGELSNWPERLTSVPPRI 423
Query: 439 NRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD 498
+ G++ G+TAEMF+E+ LWKKRV YYK++DYQLA+ GRYRNLLDMNAYLGGFAAAL+DD
Sbjct: 424 SSGSLKGITAEMFKENNELWKKRVAYYKTLDYQLAERGRYRNLLDMNAYLGGFAAALIDD 483
Query: 499 PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCE 558
P+WVMNTVPVEA++NTLG IYERGLIGTY NWCEAMSTYPRTYD +H DS+FSLY++RC+
Sbjct: 484 PVWVMNTVPVEAEVNTLGAIYERGLIGTYMNWCEAMSTYPRTYDFMHGDSVFSLYQNRCK 543
Query: 559 MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618
MED+LLEMDRILRP+GSVI+RDDVD+L+K+KS TD M+W+ RIADHE GP QREKIL A
Sbjct: 544 MEDILLEMDRILRPQGSVILRDDVDVLLKVKSFTDAMQWDSRIADHEKGPHQREKILVAV 603
Query: 619 KKYWTAPAPDQ 629
K+YWTAP+PDQ
Sbjct: 604 KQYWTAPSPDQ 614
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 637 | ||||||
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.982 | 0.988 | 0.700 | 3.8e-259 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.971 | 0.980 | 0.689 | 7.9e-252 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.902 | 0.899 | 0.616 | 2e-210 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.963 | 0.969 | 0.579 | 5.2e-207 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.919 | 0.951 | 0.557 | 2.5e-191 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.921 | 0.945 | 0.556 | 1.3e-185 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.828 | 0.864 | 0.524 | 8.4e-161 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.875 | 0.925 | 0.477 | 1.9e-147 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.806 | 0.856 | 0.485 | 1e-139 | |
| TAIR|locus:2117733 | 600 | QUA3 "QUASIMODO 3" [Arabidopsi | 0.791 | 0.84 | 0.452 | 1.4e-126 |
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2494 (883.0 bits), Expect = 3.8e-259, P = 3.8e-259
Identities = 444/634 (70%), Positives = 528/634 (83%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC T +T + L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPC--TFPHQTTPI-LNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+K
Sbjct: 298 -NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRK 356
Query: 359 LIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNI 416
L+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S I
Sbjct: 357 LVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEI 416
Query: 417 KEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPG 476
KE+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ G
Sbjct: 417 KEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETG 476
Query: 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMST 536
RYRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCEAMST
Sbjct: 477 RYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMST 536
Query: 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME 596
YPRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K+K ITD M+
Sbjct: 537 YPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQ 596
Query: 597 WEGRIADHENGPRQREKILFANKKYWTAPAPDQN 630
WEGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 597 WEGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2425 (858.7 bits), Expect = 7.9e-252, P = 7.9e-252
Identities = 433/628 (68%), Positives = 509/628 (81%)
Query: 13 ITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKAST 72
I+ +TK ANLY +TLV +LC YL G+WQ++ RAA S PC + ST
Sbjct: 7 ISSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSD---GTPCEGFTRPNST 63
Query: 73 NLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCP 132
+LDF AHH DPPP P C E+ PCED RSLKF R+RL YR+RHCP
Sbjct: 64 K-DLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCP 122
Query: 133 EKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPG 192
E+ E+LKCR+PAP+GY PFRWP SR AW+ANVPH ELTVEKKNQNWVR++ DRF FPG
Sbjct: 123 EREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPG 182
Query: 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTH 252
GGTMFPRGADAYIDDIG+LI+L DGSIRTAIDTGCGVAS+GAYL+SRNI +SFAPRDTH
Sbjct: 183 GGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTH 242
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLR 312
EAQVQFALERGVPA+IG+MA+IRLPYPSRAFD+AHCSRCLIPWGQ DG YL+EVDRVLR
Sbjct: 243 EAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQN-DGAYLMEVDRVLR 301
Query: 313 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPT 372
PGGYWILSGPP+NW+ WKGW RT +DL +EQ IE +ARSLCWKK++Q+ DLAIWQKP
Sbjct: 302 PGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPF 361
Query: 373 NHVHCIANRRVFKKPRFCKA-QDPDMAWYTKMETCLTPLPEVSN---IKEIAGGQLTKWP 428
NH+ C R V K P FC+ QDPDMAWYTKM++CLTPLPEV + +K +AGG++ KWP
Sbjct: 362 NHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWP 421
Query: 429 ERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYL 488
RLNAIPPRVN+GA++ +T E F E+T LWK+RV+YYK +DYQL + GRYRNL+DMNAYL
Sbjct: 422 ARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNAYL 481
Query: 489 GGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADS 548
GGFAAAL DDP+WVMN VPVEAK+NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IHADS
Sbjct: 482 GGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADS 541
Query: 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGP 608
+F+LY+ +CE E++LLEMDRILRP G VIIRDDVD+L+K+K +T G+EWEGRIADHE GP
Sbjct: 542 VFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEKGP 601
Query: 609 RQREKILFANKKYWTAPAPDQNQGTHTA 636
+REKI +A K+YWT PAPD+++ +A
Sbjct: 602 HEREKIYYAVKQYWTVPAPDEDKNNTSA 629
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1998 (708.4 bits), Expect = 2.0e-210, Sum P(2) = 2.0e-210
Identities = 357/579 (61%), Positives = 442/579 (76%)
Query: 49 RAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENV 108
RA T+ + S +S+S +S + LDF +HH+ + T V Y PCD E
Sbjct: 63 RAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKL-ELKITNQTVKYFEPCDMSLSEYT 121
Query: 109 PCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPH 168
PCED R +FDR+ + YRERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PH
Sbjct: 122 PCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPH 181
Query: 169 KELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG 228
KEL++EK QNW++ +G+RF FPGGGTMFPRGADAYIDDI +LI L DG+IRTAIDTGCG
Sbjct: 182 KELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCG 241
Query: 229 VASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288
VAS+GAYL+ R+I+A+SFAPRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHC
Sbjct: 242 VASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHC 301
Query: 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 348
SRCLIPW Q DGLYL EVDRVLRPGGYWILSGPP+NW+ +WKGW R+ EDLK EQ+ IE
Sbjct: 302 SRCLIPWFQN-DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIE 360
Query: 349 TIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD-PDMAWYTKMETCL 407
ARSLCWKK+ +K DL+IWQKP NHV C +RV K P C D PD AWY +E+C+
Sbjct: 361 DAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCV 420
Query: 408 TPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKS 467
TPLPE ++ E AGG L WP R A+PPR+ G + + AE FRED +WK+R++YYK
Sbjct: 421 TPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQ 480
Query: 468 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTY 527
+ +L++ GR+RN++DMNAYLGGFAAA++ P WVMN VPV+A+ TLGVI+ERG IGTY
Sbjct: 481 IMPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTY 539
Query: 528 QNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVK 587
Q+WCE STYPRTYDLIHA +FS+Y++RC++ +LLEMDRILRPEG+V+ RD V++L K
Sbjct: 540 QDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTK 599
Query: 588 IKSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 626
I+SIT+GM W+ RI DHE GP EKIL A K YWT P+
Sbjct: 600 IQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2002 (709.8 bits), Expect = 5.2e-207, P = 5.2e-207
Identities = 360/621 (57%), Positives = 462/621 (74%)
Query: 16 KTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILT-SVPCSSTSAKAST-N 73
+ + L I V+ LC +FY+ G WQ + + ++ S T S P SS+S+ +S+ +
Sbjct: 13 EARRKKLTLILGVSGLCILFYVLGAWQAN--TVPSSISKLGCETQSNPSSSSSSSSSSES 70
Query: 74 LNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE 133
LDF +H+Q + T + Y PC+ E PCED R +FDR+ + YRERHCP
Sbjct: 71 AELDFKSHNQI-ELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPV 129
Query: 134 KTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGG 193
K ELL C +P P Y +PF+WP+SR +AWY N+PHKEL+VEK QNW++ +GDRF FPGG
Sbjct: 130 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGG 189
Query: 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHE 253
GTMFPRGADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYL+ R+I+AVSFAPRDTHE
Sbjct: 190 GTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHE 249
Query: 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRP 313
AQVQFALERGVPA+IG+M S RLPYP+RAFD+AHCSRCLIPW + DGLYL+EVDRVLRP
Sbjct: 250 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN-DGLYLMEVDRVLRP 308
Query: 314 GGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTN 373
GGYWILSGPP+NW+ +W+GW RT EDLK EQ+ IE +A+SLCWKK+ +K DL+IWQKP N
Sbjct: 309 GGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLN 368
Query: 374 HVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNA 433
H+ C ++ K P C + + D AWY +ETC+TPLPE +N + AGG L WP+R A
Sbjct: 369 HIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFA 428
Query: 434 IPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAA 493
+PPR+ RG + + AE FRED +WK+R+ +YK + +L+ GR+RN++DMNA+LGGFAA
Sbjct: 429 VPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFLGGFAA 487
Query: 494 ALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 553
+++ P WVMN VPV+A+ TLGVIYERGLIGTYQ+WCE STYPRTYD+IHA +FSLY
Sbjct: 488 SMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLY 547
Query: 554 KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREK 613
+ RC++ +LLEMDRILRPEG+V++RD+V+ L K++ I GM+W+ +I DHE GP EK
Sbjct: 548 EHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEK 607
Query: 614 ILFANKKYWTAPAPDQNQGTH 634
IL A K YWT D+N +
Sbjct: 608 ILVAVKTYWTGQPSDKNNNNN 628
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
Identities = 336/603 (55%), Positives = 429/603 (71%)
Query: 25 ITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNL--NLDFSAHH 82
I +V LC FY+ G WQ S G + S+ T++ A N+ +L+F HH
Sbjct: 18 IFIVFSLCCFFYILGAWQRS-GFGKG--------DSIALEMTNSGADCNIVPSLNFETHH 68
Query: 83 QAPDP---PPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLK 139
A+V PCD +Y + PC+D R++ F RD +IYRERHC + E L
Sbjct: 69 AGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLH 128
Query: 140 CRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPR 199
C +PAP GY PF WP+SR + YAN P+K LTVEK QNW++++GD F FPGGGT FP+
Sbjct: 129 CLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQ 188
Query: 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
GAD YID + +I +++G++RTA+DTGCGVASWGAYL SRN+ A+SFAPRD+HEAQVQFA
Sbjct: 189 GADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFA 248
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWIL 319
LERGVPA+IGV+ +I+LPYP+RAFDMAHCSRCLIPWG DG+YL+EVDRVLRPGGYWIL
Sbjct: 249 LERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGAN-DGMYLMEVDRVLRPGGYWIL 307
Query: 320 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIA 379
SGPP+NW+ ++K W R EDL+ EQ IE A+ LCW+K + ++AIWQK N C
Sbjct: 308 SGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEAC-R 366
Query: 380 NRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVN 439
+R+ + FCK D D WY KME C+TP PE S+ E+AGG+L +P+RLNA+PPR++
Sbjct: 367 SRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRIS 426
Query: 440 RGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP 499
G++ GVT + + +D WKK V YK ++ L GRYRN++DMNA GGFAAAL
Sbjct: 427 SGSISGVTVDAYEDDNRQWKKHVKAYKRIN-SLLDTGRYRNIMDMNAGFGGFAAALESQK 485
Query: 500 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEM 559
LWVMN VP A+ N LGV+YERGLIG Y +WCEA STYPRTYDLIHA+ +FSLYK++C
Sbjct: 486 LWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNA 545
Query: 560 EDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619
+D+LLEMDRILRPEG+VIIRDDVD L+K+K I GM W+ ++ DHE+GP EK+L A K
Sbjct: 546 DDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVK 605
Query: 620 KYW 622
+YW
Sbjct: 606 QYW 608
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
Identities = 335/602 (55%), Positives = 422/602 (70%)
Query: 24 SITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQ 83
S+ +V LC FYL G WQ S G + + I C+ +LDF HH
Sbjct: 18 SLLVVVGLCCFFYLLGAWQKS-GFGKGDSIAMEITKQAQCTDIVT------DLDFEPHHN 70
Query: 84 APDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRV 142
P + PCD K + PC++ R++KF R+ +IYRERHCP E L+C V
Sbjct: 71 TVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEKLRCLV 130
Query: 143 PAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGAD 202
PAP GY PF WP+SR + YAN P K LTVEK QNWV+FQG+ F FPGGGTMFP+GAD
Sbjct: 131 PAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMFPQGAD 190
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
AYI+++ +I +KDGS+RTA+DTGCGVASWGAY++ RN+L +SFAPRD HEAQVQFALER
Sbjct: 191 AYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALER 250
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322
GVPA+I V+ SI LPYP+RAFDMA CSRCLIPW +G YL+EVDRVLRPGGYW+LSGP
Sbjct: 251 GVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTAN-EGTYLMEVDRVLRPGGYWVLSGP 309
Query: 323 PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRR 382
P+NW++ K WNRT +L +EQ IE IA SLCW+K +K D+AI++K N C +
Sbjct: 310 PINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSCDRSTP 369
Query: 383 VFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGA 442
V CK +D D WY ++ETC+TP P+VSN +E+AGG+L K+PERL A+PP +++G
Sbjct: 370 VDT----CKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGL 425
Query: 443 VDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWV 502
++GV E ++ED LWKKRVT YK ++ +L RYRN++DMNA LGGFAAAL WV
Sbjct: 426 INGVDEESYQEDINLWKKRVTGYKRIN-RLIGSTRYRNVMDMNAGLGGFAAALESPKSWV 484
Query: 503 MNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDV 562
MN +P K NTL V+YERGLIG Y +WCE STYPRTYD IHA +FSLY+ C++ED+
Sbjct: 485 MNVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCKLEDI 543
Query: 563 LLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYW 622
LLE DRILRPEG VI RD+VD+L ++ I DGM W+ ++ DHE+GP EKIL A K+YW
Sbjct: 544 LLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYW 603
Query: 623 TA 624
A
Sbjct: 604 VA 605
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 281/536 (52%), Positives = 374/536 (69%)
Query: 85 PDPPPTLARVT-YIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE-KTELLKCRV 142
P PP + + ++ Y P C + +PC D + ++ +R RERHCP+ E +C V
Sbjct: 78 PPPPSSSSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLV 137
Query: 143 PAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGAD 202
P P GY PF WPESR++AW+ NVP K L KK QNWVR +GDRF FPGGGT FP G
Sbjct: 138 PKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVK 197
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
Y+D I ++ L GSIRT +D GCGVAS+GA+L++ IL +S APRD HEAQVQFALER
Sbjct: 198 DYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALER 257
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322
G+PA++GV+++ +LPYPSR+FDM HCSRCL+ W Y DGLYL+EVDRVLRP GYW+LSGP
Sbjct: 258 GLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSY-DGLYLMEVDRVLRPEGYWVLSGP 316
Query: 323 PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRR 382
PV +K R +++L+++ + + R LCW+K+ + + IW+KP+NH+ C +
Sbjct: 317 PVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLK 376
Query: 383 VFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGA 442
K P C + DPD AWY +ME C+TPLP+V++ + L WPERLN +P R+ G+
Sbjct: 377 ALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGS 432
Query: 443 VDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWV 502
+ G T F+ DT LW++RV YY + ++ G+YRN++DMNA LGGFAAAL+ P+WV
Sbjct: 433 IQGTTIAGFKADTNLWQRRVLYYDT-KFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWV 491
Query: 503 MNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDV 562
MN VP + K NTLGV+Y+RGLIGTY NWCEA+STYPRTYDLIHA+ +FSLY D+C++ D+
Sbjct: 492 MNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDI 551
Query: 563 LLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618
LLEM RILRPEG+VIIRD D+LVK+K+IT+ M W G + +N IL +
Sbjct: 552 LLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIVD 607
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
Identities = 275/576 (47%), Positives = 370/576 (64%)
Query: 55 SSILTSVPCSSTS---AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCE 111
S L + CS AK T A + P P + P C ++ + PC
Sbjct: 31 SFYLGGIFCSERDKIVAKDVTRTTTKAVASPKEPTATPIQIKSVSFPECGSEFQDYTPCT 90
Query: 112 DTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKEL 171
D R K+ RL + ERHCP E +C +P P GY P RWP+SR+ WY NVP+ +
Sbjct: 91 DPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWI 150
Query: 172 TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVA 230
+K NQ+W++ +GD+F FPGGGTMFPRG Y+D + LI +KDG++RTAIDTGCGVA
Sbjct: 151 NKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVA 210
Query: 231 SWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290
SWG L+ R IL++S APRD HEAQVQFALERG+PA++G++++ RLP+PS AFDMAHCSR
Sbjct: 211 SWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSR 270
Query: 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 350
CLIPW ++ G+YL+E+ R++RPGG+W+LSGPPVN+ W+GWN T ED KS+ N ++++
Sbjct: 271 CLIPWTEFG-GIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSL 329
Query: 351 ARSLCWKKLIQKKDLAIWQKPTNHVHC---IANRRVFKKPRFCKAQDPDMAWYTKMETCL 407
S+C+KK QK D+A+WQK ++ C IA P+ + +PD AWYT + C+
Sbjct: 330 LTSMCFKKYAQKDDIAVWQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCV 388
Query: 408 T-PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYK 466
P P+V K+ G + KWPERL+ P R+ G V G +A + D WK RV +YK
Sbjct: 389 VAPTPKV---KKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYK 443
Query: 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGT 526
V L + RN++DMN GGF+AAL++DP+WVMN V N+L V+++RGLIGT
Sbjct: 444 KVLPALGTD-KIRNVMDMNTVYGGFSAALIEDPIWVMNVVS-SYSANSLPVVFDRGLIGT 501
Query: 527 YQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILV 586
Y +WCEA STYPRTYDL+H DS+F+L RCEM+ +LLEMDRILRP G VIIR+ +
Sbjct: 502 YHDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMD 561
Query: 587 KIKSITDGMEWEGRIADHENGPRQREKILFANKKYW 622
I ++ G+ W R + E + EKIL KK W
Sbjct: 562 AITTLAKGIRWSCRREETEYAVKS-EKILVCQKKLW 596
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 256/527 (48%), Positives = 344/527 (65%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C Y + PC D + K+ RL + ERHCP + +C VP P GY P RWP+S+
Sbjct: 73 CSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKD 132
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLI-NLKDGS 218
WY NVP+ + +K NQNW+R +G++F FPGGGTMFP G AY+D + LI +KDG+
Sbjct: 133 ECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGT 192
Query: 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278
IRTAIDTGCGVASWG L+ R IL VS APRD HEAQVQFALERG+PA++G++++ RLP+
Sbjct: 193 IRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPF 252
Query: 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTE 338
PS +FDMAHCSRCLIPW ++ G+YL+EV R+LRPGG+W+LSGPPVN+E+ WKGW+ T E
Sbjct: 253 PSNSFDMAHCSRCLIPWTEFG-GVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIE 311
Query: 339 DLKSEQNGIETIARSLCWKKLIQKKDLAIWQK-PTNHVHC-IANRRVFKKPRFCKAQDPD 396
+ +S ++ + S+C+K +K D+A+WQK P N + ++N P+ + +PD
Sbjct: 312 EQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPD 371
Query: 397 MAWYTKMETCLT-PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDT 455
AWYT + C+ P P+ +K+ KWPERL+ P R++ V G +F+ D
Sbjct: 372 SAWYTPLRPCVVVPSPK---LKKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDD 426
Query: 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTL 515
+ WK R +YK + + + RN++DMN GG AAALV+DPLWVMN V A NTL
Sbjct: 427 SKWKTRAKHYKKLLPAIGSD-KIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAA-NTL 484
Query: 516 GVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGS 575
V+++RGLIGTY +WCEA STYPRTYDL+H D +F+ RC+M+ V+LEMDRILRP G
Sbjct: 485 PVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSGY 544
Query: 576 VIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYW 622
IIR+ I S+ + W R E+ EK+L KK W
Sbjct: 545 AIIRESSYFADSIASVAKELRWSCRKEQTESASAN-EKLLICQKKLW 590
|
|
| TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 243/537 (45%), Positives = 339/537 (63%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C + V ++PCED R+ + R+ YRERHCP E C +P P GY +P WPES
Sbjct: 84 CPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLH 143
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSI 219
W+AN+P+ ++ K +Q W++ +G+ F+FPGGGTMFP GA YI+ + + I L G++
Sbjct: 144 KIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTL 203
Query: 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
RTA+D GCGVAS+G L+S+ ILA+SFAPRD+H++Q+QFALERGVPA + ++ + RLP+P
Sbjct: 204 RTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFP 263
Query: 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 339
+ +FD+ HCSRCLIP+ Y + Y IEVDR+LRPGGY ++SGPPV W K W D
Sbjct: 264 AYSFDLMHCSRCLIPFTAY-NATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW----AD 318
Query: 340 LKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAW 399
L++ +AR+LC++ + + IW+KP C+ ++ F ++ P AW
Sbjct: 319 LQA-------VARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAW 370
Query: 400 YTKMETCLTPLPEVSNIK-EIAGGQLTKWPERLNAIPPR--VNRGAVDGVTAEMFREDTA 456
Y K++ C+T P S++K E A G ++KWPERL +P R V + +D +F D
Sbjct: 371 YFKLKRCVTR-P--SSVKGEHALGTISKWPERLTKVPSRAIVMKNGLD-----VFEADAR 422
Query: 457 LWKKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTL 515
W +RV YY+ S++ +L P RN++DMNA+ GGFAA L DP+WVMN +P + TL
Sbjct: 423 RWARRVAYYRDSLNLKLKSP-TVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPL-TL 480
Query: 516 GVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK------DRCEMEDVLLEMDRI 569
VIY+RGLIG Y +WCE STYPRTYD IH I SL K RC + D+++EMDRI
Sbjct: 481 DVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRI 540
Query: 570 LRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 626
LRPEG V+IRD ++L K+ + + W I + E REKIL A K W P+
Sbjct: 541 LRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9ZPH9 | PMTF_ARATH | 2, ., 1, ., 1, ., - | 0.6987 | 0.9827 | 0.9889 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00021435 | hypothetical protein (622 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 637 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-05 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 856 bits (2213), Expect = 0.0
Identities = 312/519 (60%), Positives = 380/519 (73%), Gaps = 18/519 (3%)
Query: 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWY 163
+ +PC D R++KF R+R+ +RERHCP E L+C VP P GY P WP+SR WY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 164 ANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRT 221
ANVPH +L EK QNWV+ +GD+F FPGGGT FP GADAYID + ++I G +RT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281
A+D GCGVAS+GAYL+SR++L +SFAP+D HEAQVQFALERGVPA++GV+ + RLPYPSR
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLK 341
+FDMAHCSRCLIPW DG+ L+EVDRVLRPGGY++LSGPPV R EDL+
Sbjct: 181 SFDMAHCSRCLIPWHAN-DGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQ 231
Query: 342 SEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWY 400
E +E +A+SLCWK + +K D+AIWQKP N+ C R KKP CK + DPD AWY
Sbjct: 232 EEWKAMEALAKSLCWKLVAKKGDIAIWQKPVNN-SCYNKREPGKKPPLCKDSDDPDAAWY 290
Query: 401 TKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKK 460
ME C+TPLPEVS+ E+ GG L KWPERL A+PPR+ G + GV+AE F+ DT LWK+
Sbjct: 291 VPMEACITPLPEVSH--EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKR 348
Query: 461 RVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE 520
RV+ YK + L GR RN++DMNA GGFAAAL+DDP+WVMN VPV +TL VIY+
Sbjct: 349 RVSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYD 407
Query: 521 RGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580
RGLIG Y +WCE STYPRTYDL+HAD +FSLYK RC +ED+LLEMDRILRP G+VIIRD
Sbjct: 408 RGLIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRD 467
Query: 581 DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619
DVD+L K+K I M WE RI D E+GP EKIL A K
Sbjct: 468 DVDVLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 223 IDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
+D GCG L R + V D + A +R + V + LP+P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKFV-VGDAEDLPFP 54
Query: 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGY 316
+FD+ S ++ + L E+ RVL+PGG
Sbjct: 55 DESFDVVVSS-LVLHHLPDPERA-LREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 637 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.97 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.84 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.54 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.47 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.46 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.46 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.42 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.41 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.38 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.37 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.37 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.35 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.35 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.32 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.32 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.31 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.31 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.3 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.29 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.29 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.28 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.27 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.27 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.25 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.25 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.24 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.24 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.23 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.23 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.23 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.23 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.21 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.21 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.2 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.19 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.16 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.16 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.16 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.14 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.13 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.13 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.12 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.12 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.1 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.09 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.09 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.05 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.05 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.04 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.03 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.02 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.02 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.01 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.01 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.0 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.99 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.99 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.99 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.99 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.98 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.98 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.97 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.96 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.95 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.93 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.92 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.92 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.92 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.92 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.91 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.91 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.9 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.89 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.89 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.88 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.86 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.86 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.86 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.84 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.84 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.82 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.81 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.8 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.8 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.79 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.79 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.79 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.78 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.76 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.76 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.75 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.75 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.73 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.7 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.69 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.68 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.68 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.67 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.66 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.65 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.63 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.62 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.62 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.61 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.59 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.59 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.58 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.57 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.57 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.57 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.55 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.55 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.54 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.54 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.51 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.51 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.5 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.49 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.48 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.47 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.47 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.47 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.47 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.46 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.45 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.45 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.45 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.45 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.45 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.44 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.43 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.41 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.4 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.4 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.38 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.38 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.36 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.35 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.35 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.35 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.34 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.34 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.34 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.33 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.33 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.32 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.32 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.32 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.31 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.31 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.31 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.3 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.3 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.28 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.27 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.25 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.24 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.23 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.23 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.22 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.22 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.22 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.21 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.19 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.17 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.17 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.16 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.16 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.16 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.14 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.12 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.12 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.12 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.11 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.1 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.1 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.1 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.09 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.09 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.09 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.07 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.04 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.03 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.99 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 97.98 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.97 | |
| PLN02366 | 308 | spermidine synthase | 97.95 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.95 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.95 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.94 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.93 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 97.93 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.93 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.92 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 97.92 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.92 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.91 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.87 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.87 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 97.86 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.85 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.84 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 97.82 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.8 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.8 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.77 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.76 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.76 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.76 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.76 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.75 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.75 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.75 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.74 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.74 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.74 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.73 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.73 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.73 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.72 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.71 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 97.71 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.7 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.69 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 97.67 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.66 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.66 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.65 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.64 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.63 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.62 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.62 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 97.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.61 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 97.6 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.6 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.58 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.58 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.58 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.56 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.56 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.56 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.55 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.55 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.55 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.54 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.53 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.52 | |
| PLN02476 | 278 | O-methyltransferase | 97.52 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.52 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.52 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.51 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.51 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.5 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.48 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.47 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.45 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.44 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 97.39 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.37 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.37 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.36 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.36 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.34 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.27 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.22 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.22 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.21 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 97.21 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.2 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.19 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 97.19 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.18 | |
| PLN02823 | 336 | spermine synthase | 97.18 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 97.13 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.12 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.07 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.06 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.06 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.05 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.01 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.01 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.0 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 96.99 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 96.98 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 96.95 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.94 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.92 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.92 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 96.91 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 96.91 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 96.88 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 96.88 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.85 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.84 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.84 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.81 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.8 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 96.79 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.76 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.62 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 96.6 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 96.6 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 96.56 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.56 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.54 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 96.51 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.49 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.48 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.45 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 96.44 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.42 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 96.41 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.4 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.35 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.35 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.35 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.34 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 96.29 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.28 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 96.27 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.26 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.26 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.24 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 96.19 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.13 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.12 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.12 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.09 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.09 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.08 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.05 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 95.98 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 95.96 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.95 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 95.91 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.9 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.83 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.74 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 95.7 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.69 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 95.53 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 95.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.42 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.42 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 95.4 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.37 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.37 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.34 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 95.31 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.25 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.25 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.13 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.12 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.11 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 95.09 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.05 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 94.97 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 94.97 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 94.94 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.89 | |
| PLN02366 | 308 | spermidine synthase | 94.87 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 94.85 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 94.83 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.76 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.75 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 94.7 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.65 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 94.55 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 94.48 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 94.18 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 94.06 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 94.05 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 93.68 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 93.21 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 92.98 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 92.98 | |
| PLN02476 | 278 | O-methyltransferase | 92.97 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 92.97 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.8 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 92.62 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 92.58 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 92.58 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 92.57 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 92.46 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.04 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 91.76 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 91.58 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 91.41 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.36 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 91.26 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 91.16 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 91.12 | |
| PLN02823 | 336 | spermine synthase | 91.03 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 90.9 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 90.64 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 90.63 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 90.46 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 90.12 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 90.03 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 89.63 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 89.53 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 89.1 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 88.95 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 88.6 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 88.51 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 88.46 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 88.3 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 88.13 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 88.0 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 87.78 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 87.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 86.5 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 86.37 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 86.27 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 86.24 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 86.23 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 86.1 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 85.73 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 85.68 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 85.21 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 84.8 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 84.73 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 84.7 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 84.52 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 84.39 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 84.31 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 84.29 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 83.94 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 83.24 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 83.02 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 82.82 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 82.42 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 82.06 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-152 Score=1226.80 Aligned_cols=500 Identities=64% Similarity=1.180 Sum_probs=485.8
Q ss_pred CcccCCCchhhhcc--chhhhhhhcCCCCCCCCccccccCCCCCCCCCCCCCcccccccccCCCCchhhhhhhhcceEee
Q 006633 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRF 183 (637)
Q Consensus 106 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~p~~~~~~clvp~P~~Y~~P~pwP~Srd~~wy~n~p~~~L~~~k~~q~W~~~ 183 (637)
||+||+|+.+++++ +++++++||||||+.+++++||||+|+||+.|+|||+|||++||+|+||++|+.+|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCCCCCCCcccHHHHHHHHHHHhcc--cCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH
Q 006633 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (637)
Q Consensus 184 ~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~--~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e 261 (637)
+|+.+.|||+|++|+.|++.|+++|.++++. .++..|++||||||+|+|+++|++++|+++++++.|.+++++|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999997 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhH
Q 006633 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLK 341 (637)
Q Consensus 262 rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~ 341 (637)
||+++.+.++..++||||+++||+|||++|+++|.+ +.+.+|.|++|+|||||+|++++||.+ +++.+++.
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~-~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~ 231 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHP-NDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLE 231 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchh-cccceeehhhhhhccCceEEecCCccc--------ccchHHHH
Confidence 999999999889999999999999999999999998 778999999999999999999999887 36778889
Q ss_pred HhHhhHHHHHHHhceeeecccCcEEEEeccCCCccccccccccCCCCCcc-cCCcCCccccccccccccCcccchhhhhc
Q 006633 342 SEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEVSNIKEIA 420 (637)
Q Consensus 342 ~~~~~ie~la~~l~w~~v~~~~~~aIWqKP~~~~~c~~~~~~~~~~~~c~-~~~~~~~wy~~l~~ci~~~p~~~~~~~~~ 420 (637)
++|+.+++++++|||++++++++++|||||.+| +||.+|+..+.|++|+ ++|||++||++|++|||++|++.+ +.+
T Consensus 232 ~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~ 308 (506)
T PF03141_consen 232 EEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIA 308 (506)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--ccc
Confidence 999999999999999999999999999999998 9999999889999999 899999999999999999998754 778
Q ss_pred CCccccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhh-ccCCCCCceeEeeecccchhhhhhhcCCC
Q 006633 421 GGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDY-QLAQPGRYRNLLDMNAYLGGFAAALVDDP 499 (637)
Q Consensus 421 ~~~~~~wp~rl~~~p~~i~~~~~~g~~~~~f~~d~~~w~~~v~~y~~~~~-~l~~~~~~r~vlD~~~g~ggfaa~l~~~~ 499 (637)
++++++||+||+++|+||+++++.|+++|.|++|+++|+++|++|+++++ .+++ +++|||||||||||||||||.++|
T Consensus 309 ~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~ 387 (506)
T PF03141_consen 309 GGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDP 387 (506)
T ss_pred ccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999887 6888 999999999999999999999999
Q ss_pred eEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 500 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 500 v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
||||||||+.++ |||++||||||||+||||||+|||||||||||||++|||.|++||++++||+||||||||||++|||
T Consensus 388 VWVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 388 VWVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ceEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 999999999886 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 580 DDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 580 d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
|+.+++++|++|+++|+|+++++|+|+||+++||||||||
T Consensus 467 D~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 467 DTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred ccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=295.61 Aligned_cols=197 Identities=19% Similarity=0.343 Sum_probs=151.8
Q ss_pred ccccccccCcccchhhhhcCCccccCccccccC-----C-cccccCcccCc------chh--cchhhHHHHHHHHHHHHH
Q 006633 402 KMETCLTPLPEVSNIKEIAGGQLTKWPERLNAI-----P-PRVNRGAVDGV------TAE--MFREDTALWKKRVTYYKS 467 (637)
Q Consensus 402 ~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~-----p-~~i~~~~~~g~------~~~--~f~~d~~~w~~~v~~y~~ 467 (637)
+...|+.|.|.. ...+.+||+....+ | +.|+. ..+. ..+ .|.-....+++.+.+|..
T Consensus 33 ~~~~CLVp~P~g-------Yk~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid 103 (506)
T PF03141_consen 33 ERLRCLVPPPKG-------YKTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYID 103 (506)
T ss_pred CCCccccCCCcc-------CCCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHH
Confidence 456788888742 35678888877544 1 22221 0110 011 344445555555666654
Q ss_pred hh----hccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-Cccc
Q 006633 468 VD----YQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYD 542 (637)
Q Consensus 468 ~~----~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~D 542 (637)
.+ +.+.++|.+|++||+|||+|+|||+|.+++|.+|+++|.+.+++++|+|+|||++.++........+|| ++||
T Consensus 104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred HHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchh
Confidence 33 223455899999999999999999999999999999999999999999999999888877766777787 9999
Q ss_pred eeeeccccccCCCCcCHH------HHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEME------DVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~------~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~~~~~~e~ 606 (637)
|+|| +||.++ .+|+|+|||||||||||++. ..+++++|++++++|||+....
T Consensus 184 mvHc--------src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~---- 251 (506)
T PF03141_consen 184 MVHC--------SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE---- 251 (506)
T ss_pred hhhc--------ccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----
Confidence 9999 777765 79999999999999999973 3568999999999999999884
Q ss_pred CCCCcceEEEEEecCCC
Q 006633 607 GPRQREKILFANKKYWT 623 (637)
Q Consensus 607 ~~~~~~~~l~~~K~~w~ 623 (637)
+..+.|+||+.=.
T Consensus 252 ----~~~~aIwqKp~~~ 264 (506)
T PF03141_consen 252 ----KGDTAIWQKPTNN 264 (506)
T ss_pred ----eCCEEEEeccCCc
Confidence 3459999998754
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=206.11 Aligned_cols=327 Identities=12% Similarity=0.129 Sum_probs=178.2
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccc--cCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASI--RLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~--~Lpfpd 280 (637)
..+.+.++..+ ..+|||||||+|.++..|++....++.+ |+++.+++.+.+. ..++.+...+.. .+++++
T Consensus 27 ~~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~gi---D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYE--GKSVLELGAGIGRFTGELAKKAGQVIAL---DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccC--CCEEEEeCCCcCHHHHHHHhhCCEEEEE---eCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 34555554433 3489999999999999999874434444 4455555554432 235667777764 567888
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
++||+|+|+.+++|+.+++...++.++.|+|||||++++............. ........ ....+..+...-++....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~-~~~~~~~~-~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KNNPTHYR-EPRFYTKVFKECHTRDED 179 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc-cCCCCeec-ChHHHHHHHHHheeccCC
Confidence 9999999999998887534678999999999999999998642211100000 00011111 122334445554444333
Q ss_pred ccC-c-EEEEeccCCCccccccccccCCCCCcccCCcCCcc--ccccccccccCcccchhhhhcCCccccCccccccCCc
Q 006633 361 QKK-D-LAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAW--YTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPP 436 (637)
Q Consensus 361 ~~~-~-~aIWqKP~~~~~c~~~~~~~~~~~~c~~~~~~~~w--y~~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~ 436 (637)
... . ...+-++++. |... ...| |..+..=++.. + -..+..+=+|+.-.++
T Consensus 180 ~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~y~~~ 233 (475)
T PLN02336 180 GNSFELSLVGCKCIGA---YVKN--------------KKNQNQICWLWQKVSST-------N--DKGFQRFLDNVQYKSS 233 (475)
T ss_pred CCEEEEEEEEeechhh---hhhc--------------cCCcceEEEEEEeecCC-------c--chhHHHHhhhhccccc
Confidence 211 1 1233344321 1111 1111 11111101000 0 0111111122110111
Q ss_pred ccccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhH
Q 006633 437 RVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 516 (637)
Q Consensus 437 ~i~~~~~~g~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~ 516 (637)
.|.. .+.|-...-.+...|..-+.++..+.. .....|||+|||.|+++..|++.. -.+|+.+|.++.++.
T Consensus 234 ~i~~-------~~~f~g~~~~v~~~v~~te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~ 303 (475)
T PLN02336 234 GILR-------YERVFGEGFVSTGGLETTKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMIS 303 (475)
T ss_pred cHHH-------HHHHhCCCCCCCchHHHHHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHH
Confidence 1100 011111011111122222233332322 346789999999999999888752 236777777778888
Q ss_pred HHHhhc--c---cchhh-ccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 517 VIYERG--L---IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 517 ~~~eRg--l---~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+.++- + +...+ |+.+ .++| .+||+|.+.+++-... +.+.+|-|+.|+|||||.++|.|
T Consensus 304 ~A~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 304 FALERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HHHHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 886653 2 12211 3322 2355 7899999987776544 45899999999999999999985
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=148.36 Aligned_cols=111 Identities=24% Similarity=0.294 Sum_probs=89.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCC-----eEEEEeccccC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP-----ALIGVMASIRL 276 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~-----~~~~~~d~~~L 276 (637)
.-+.+.+.+...+ +.+|||||||||.++..+++.. ..++.+ |++..|++.|+++..+ +.|.++|++.|
T Consensus 39 Wr~~~i~~~~~~~--g~~vLDva~GTGd~a~~~~k~~g~g~v~~~---D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 39 WRRALISLLGIKP--GDKVLDVACGTGDMALLLAKSVGTGEVVGL---DISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHhhCCCC--CCEEEEecCCccHHHHHHHHhcCCceEEEE---ECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 3444555554444 4499999999999999999872 333333 5566777777766433 78999999999
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|++||+|.+++.|.++. |.+.+|+|+.|||||||.+++..
T Consensus 114 Pf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999999999997777 89999999999999999998875
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=124.09 Aligned_cols=92 Identities=27% Similarity=0.431 Sum_probs=78.3
Q ss_pred EEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccCCcCC
Q 006633 223 IDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYA 299 (637)
Q Consensus 223 LDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d 299 (637)
||+|||+|.++..|+++ +..++.+ |+++.+++.++++.. ...+...+...+|+++++||+|++..+++|+. +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI---DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE---ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--H
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--C
Confidence 89999999999999999 7777777 778888888887753 35588899999999999999999999998883 8
Q ss_pred HHHHHHHHHhcccCCeEEEE
Q 006633 300 DGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 300 ~~~~L~ei~RvLKPGG~Lvl 319 (637)
...+++|+.|+|||||++++
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=147.03 Aligned_cols=108 Identities=27% Similarity=0.385 Sum_probs=74.6
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEeccccCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPY 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d~~~Lpf 278 (637)
.+.+.+...++. +|||+|||||.++..++++ +..++.+ |+++.|++.|+++ ..++.+.++|++.+||
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~v---D~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGV---DISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEE---ES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEe---cCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 455555444444 9999999999999999876 2233333 5566666666543 2378999999999999
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++++||+|+|++.+.+++ |..++++|+.|+|||||.+++..
T Consensus 113 ~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999999997777 89999999999999999999875
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=138.50 Aligned_cols=151 Identities=23% Similarity=0.271 Sum_probs=106.5
Q ss_pred cCCCCchhh-hhhhhcceEeecCCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCE
Q 006633 164 ANVPHKELT-VEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL 242 (637)
Q Consensus 164 ~n~p~~~L~-~~k~~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~ 242 (637)
.|+++..+. ..+..+.|++.+++.-.. . .+-.....|+...... ...-.+.+|||||||.|.++..|++.|..
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~~L-H---~~N~~rl~~i~~~~~~--~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~ 83 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFKPL-H---KINPLRLDYIREVARL--RFDLPGLRVLDVGCGGGILSEPLARLGAS 83 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCceeee-e---eeccchhhhhhhhhhc--ccCCCCCeEEEecCCccHhhHHHHHCCCe
Confidence 356665553 455678899877753322 1 1111223333332221 00123558999999999999999999765
Q ss_pred EEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 243 AVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 243 ~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
++++ |+++..++.|+ +.++.+.+....++.+....++||+|+|..+++|++ +++.++..+.+.+||||.++
T Consensus 84 Vtgi---D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~--dp~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 84 VTGI---DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP--DPESFLRACAKLVKPGGILF 158 (243)
T ss_pred eEEe---cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC--CHHHHHHHHHHHcCCCcEEE
Confidence 5555 55556655554 556777777777778776678999999999999999 89999999999999999999
Q ss_pred EEeCCCC
Q 006633 319 LSGPPVN 325 (637)
Q Consensus 319 ls~pp~~ 325 (637)
++++..+
T Consensus 159 ~STinrt 165 (243)
T COG2227 159 LSTINRT 165 (243)
T ss_pred EeccccC
Confidence 9987543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=142.59 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=89.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYP 279 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfp 279 (637)
..+.+...+.+.++. +|||||||+|..+..|++. +..++.+ |+++.+++.|+++. ..+.+...|...+|++
T Consensus 40 ~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 40 ATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGV---DICEKMVNIAKLRNSDKNKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEE---ECCHHHHHHHHHHcCcCCceEEEECCcccCCCC
Confidence 355666666665544 9999999999999988765 4444444 55667777776553 2477888888888999
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||+|++..+++|+..++...+++++.++|||||+|+++.+
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999888888643788999999999999999999865
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-13 Score=136.19 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=91.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
..+.+.+.++.. ...+|||+|||+|.++..|++.+..++.+ |+++.+++.++++.....+..+|...+|+++++|
T Consensus 30 ~a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~~---D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 30 SADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGSQVTAL---DLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 344555555533 24589999999999999998876555555 6677888888877655567788899999999999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+++.++ ||.. +...++.++.|+|||||.++++.+
T Consensus 105 D~V~s~~~l-~~~~-d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 105 DLAWSNLAV-QWCG-NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEEECchh-hhcC-CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999988 6666 899999999999999999999975
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-13 Score=142.50 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
.+.+|||||||+|.++..|++.+..++++ |.++.+++.|+++ + ..+.+...++..+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GI---D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGV---DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 34589999999999999999886555555 5566666666543 1 2577888888888888899999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
++|+. ++..++.++.++|||||.++++.+..
T Consensus 208 LeHv~--d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 208 IEHVA--NPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHhcC--CHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99988 79999999999999999999997643
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=138.00 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C--CEEEEcCccccHHHHHHHHHHc--------CCCeEEEEeccccC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER--------GVPALIGVMASIRL 276 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~--v~~vdisp~Dls~a~i~~A~er--------g~~~~~~~~d~~~L 276 (637)
+.+.+...++ .+|||+|||+|.++..|+++ + ..++++ |+++.|++.|+++ ..++.+..++...+
T Consensus 65 ~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gv---D~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 65 AVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGL---DFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 3344444443 49999999999999888875 2 233333 4455666655433 23578888999999
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+++++||+|+++.+++|+. ++..+++|+.|+|||||++++...
T Consensus 140 p~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999999999999997776 899999999999999999999864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-13 Score=125.44 Aligned_cols=146 Identities=20% Similarity=0.374 Sum_probs=98.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
+.+.+.++.+. .....+|||||||+|.++..|++.+..++.+ |+++.+++. ........+....++++++|
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~---D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGV---DISPQMIEK-----RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEE---ESSHHHHHH-----TTSEEEEEECHTHHCHSSSE
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEE---ECCHHHHhh-----hhhhhhhhhhhhhhccccch
Confidence 34445555542 2234599999999999999998887666665 556555554 23333433344555678999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCc--cccccCC--CCc--hhhhHHhHhhHHHHHHHhcee
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNW--ESHWKGW--NRT--TEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w--~~~~~~w--~~t--~e~l~~~~~~ie~la~~l~w~ 357 (637)
|+|+|+.+++|+. ++..+|.++.++|||||+++++.+.... ......| ... ........+.++.++++.+++
T Consensus 80 D~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 80 DLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp EEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred hhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 9999999998888 7999999999999999999999875421 1111111 111 111122345688888888887
Q ss_pred eec
Q 006633 358 KLI 360 (637)
Q Consensus 358 ~v~ 360 (637)
.+.
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=140.02 Aligned_cols=115 Identities=18% Similarity=0.288 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccc---CCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEec
Q 006633 203 AYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMA 272 (637)
Q Consensus 203 ~~i~~L~~lL~~~---~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d 272 (637)
..++.+.+.+... ...+.+|||||||+|.++..|+++ +..++++ |+++.+++.+++ .+. ++.+.++|
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gv---D~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGI---TLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 3444455555441 123458999999999999999986 4444444 445555554433 333 57888999
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+|+++++||+|++..+++|+. +...+++++.|+|||||.|++.+.
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999998887 799999999999999999999863
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=128.13 Aligned_cols=107 Identities=15% Similarity=0.271 Sum_probs=76.2
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRA 282 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd~s 282 (637)
+.+.++..++ .+|||+|||+|.++..|++++..++.+ |+++.+++.++ +.+. ++.+...|...++++ ++
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gv---D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAW---DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 3444443333 489999999999999999986444444 44444444433 2333 366777777777664 67
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
||+|+|+.+++++..++...++.++.++|||||++++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999986666446789999999999999997654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=132.08 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=83.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
..+.+.++...+ .+|||||||+|.++..|+++ +..++++ |+++.+++.|++++ +.+..+|...++ ++++|
T Consensus 19 ~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~~v~gv---D~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGAVIEAL---DSSPEMVAAARERG--VDARTGDVRDWK-PKPDT 90 (255)
T ss_pred HHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCc
Confidence 345555554443 49999999999999999887 4455555 66778888887765 556677777764 56899
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+|+.+++|+. ++..+++++.++|||||++++..+
T Consensus 91 D~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 9999999996655 899999999999999999999864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-11 Score=132.52 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=73.5
Q ss_pred CCceeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcccchhhccccc----cCCCC-Cccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA----MSTYP-RTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~----~~~yp-~t~Dl~H~ 546 (637)
..-..+||+|||.|.|.+.++.. +++.+-+-..... ..+..+.++||-. +.-.|.. ..-+| .+.|-||.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~-~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA-NVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH-HHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE
Confidence 45789999999999999999765 3344333332221 2345556667622 1122322 23356 88998887
Q ss_pred cccccc-------CCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhc
Q 006633 547 DSIFSL-------YKDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDG 594 (637)
Q Consensus 547 ~~lfs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~ 594 (637)
.|.. .+.|=--+..|-++-|+|+|||.+.+ ||..+....+.+.+..
T Consensus 424 --~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 424 --LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred --ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 5651 23333335899999999999999888 5777776666655443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-12 Score=124.41 Aligned_cols=109 Identities=14% Similarity=0.204 Sum_probs=75.8
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDl 285 (637)
+.+.+.... ..+|||+|||+|.++.+|++++ |+++|+++..+..+.. .+.+.++++.+...+....+++ ++||+
T Consensus 22 l~~~~~~~~--~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 22 VREAVKTVA--PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHhccCC--CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCE
Confidence 334444333 3489999999999999999986 4455554433332221 2234455666666666555654 57999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|+++.+++++..++...+++++.|+|||||++++.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999997776436778999999999999996665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-12 Score=130.11 Aligned_cols=159 Identities=20% Similarity=0.312 Sum_probs=103.9
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCcccccccccCCCCchhhhhhhhcceEeecCCeeecCCCCCCCcccHHHHHHHHH
Q 006633 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIG 209 (637)
Q Consensus 130 ~C~p~~~~~~clvp~P~~Y~~P~pwP~Srd~~wy~n~p~~~L~~~k~~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i~~L~ 209 (637)
.|+. -+|+..+..||..-+|-...+. .+..+...... ..+. |...|. |..-.+...+.+.
T Consensus 20 ~C~~----~h~fd~a~~Gy~~ll~~~~~~~----~~~~d~~~~~~-ar~~----------fl~~g~-y~~l~~~i~~~l~ 79 (272)
T PRK11088 20 ICPQ----NHQFDCAKEGYVNLLPVQHKRS----KDPGDNKEMMQ-ARRA----------FLDAGH-YQPLRDAVANLLA 79 (272)
T ss_pred EcCC----CCCCccccCceEEeccccccCC----CCCCcCHHHHH-HHHH----------HHHCCC-hHHHHHHHHHHHH
Confidence 7887 3899999999988876211111 01112111111 1111 211111 2222233333343
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
+.++ ....+|||+|||+|.++..|++. +..++++ |+++.+++.|.++..++.+.+++...+|+++++||
T Consensus 80 ~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~gi---D~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 80 ERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGL---DISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred HhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEE---CCCHHHHHHHHHhCCCCeEEEeecccCCCcCCcee
Confidence 3332 22348999999999999998765 1244555 77888998888887788899999999999999999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+|++..+ + ..+.++.|+|||||+|++..|.
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 9998653 1 1358999999999999999774
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=124.84 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
..+|||||||+|.++..|+++ +..++++ |+++.|++.|+++. .+.+++...+|+++++||+|+++.+++|+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gv---D~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~- 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVAL---DYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD- 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEE---CCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-
Confidence 458999999999999999887 4555555 67788888887653 345778899999999999999999997666
Q ss_pred CCHHHHHHHHHhcccCCe
Q 006633 298 YADGLYLIEVDRVLRPGG 315 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPGG 315 (637)
+.+.+++|+.|+|||.+
T Consensus 125 -d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CHHHHHHHHHHHhcCce
Confidence 89999999999999953
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=124.02 Aligned_cols=110 Identities=24% Similarity=0.397 Sum_probs=83.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEecc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMAS 273 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~ 273 (637)
..+.+.+.+...++. +|||+|||+|.++..+++. .++++|+ ++.+++.+.++ + ..+.+...+.
T Consensus 33 ~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~-----s~~~~~~a~~~~~~~~~~~v~~~~~d~ 105 (231)
T TIGR02752 33 WRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDF-----SENMLSVGRQKVKDAGLHNVELVHGNA 105 (231)
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEech
Confidence 334566666555544 9999999999999998875 2455555 44555444432 2 2467788888
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+++++++||+|++..+++++. +...+++++.++|||||.+++..+
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred hcCCCCCCCccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 88888889999999999886655 789999999999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.4e-12 Score=130.22 Aligned_cols=123 Identities=22% Similarity=0.376 Sum_probs=86.9
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC-
Q 006633 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV- 264 (637)
Q Consensus 191 pg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~- 264 (637)
+.+...+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ .+++.|.+.+++ .++
T Consensus 37 ~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 37 DEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSS
T ss_pred CCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCC
Confidence 3333334444555666777777777766 9999999999999999999 8888887 678888877654 344
Q ss_pred -CeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 265 -PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 265 -~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+.+...|...++. +||.|++..+++|+...+...+++++.++|||||.+++..
T Consensus 112 ~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 112 DRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 36777777766654 8999999999999975478999999999999999999864
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=127.64 Aligned_cols=111 Identities=20% Similarity=0.107 Sum_probs=82.5
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCC-CC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP-YP 279 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lp-fp 279 (637)
.+.+++........+|||+|||+|.++..|++++..++.+ |+++.+++.|+++ +. .+.+..++...++ ++
T Consensus 33 ~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~v---D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 33 DLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILC---DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 3444443222334599999999999999999986555444 5555666555543 32 4677777777664 66
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||+|++..+++|+. ++..++.++.++|||||++++...
T Consensus 110 ~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 110 ETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 78999999999997666 789999999999999999998754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=126.47 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=84.8
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~s 282 (637)
.+.+...++..+ +.+|||||||+|.++..|+++ +..++.+ |+++.+++.|+++...+.+...|...+. ++++
T Consensus 20 ~~~ll~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 20 ARDLLARVPLEN--PRYVVDLGCGPGNSTELLVERWPAARITGI---DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHHhhCCCcC--CCEEEEEcccCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHhCCCCeEEECchhccC-CCCC
Confidence 334445554444 349999999999999999876 3344555 5667788888877666778888876664 4568
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.++++.. +...+++++.++|||||.+++..+
T Consensus 94 fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 94 LDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999999995444 789999999999999999999854
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=135.02 Aligned_cols=110 Identities=22% Similarity=0.395 Sum_probs=85.8
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lpfpd 280 (637)
+.+.+.+...+ +.+|||||||+|.++..|++. +..++++ |+++.+++.|+++ ...+.+...|...+++++
T Consensus 256 e~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gv---DiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 256 KEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENFDVHVVGI---DLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD 330 (475)
T ss_pred HHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC
Confidence 34444444433 459999999999999988875 4444444 5556666666543 235778888888888988
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|+|..+++|+. ++..++.++.|+|||||.+++..+
T Consensus 331 ~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999998887 799999999999999999999865
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-11 Score=117.30 Aligned_cols=114 Identities=29% Similarity=0.399 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~ 274 (637)
..+.+.+.+.+...++. +|||+|||+|.++..++++. ..++.+ |+++.+++.++++ ...+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~---d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGI---DRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEE---eCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 44556666776665544 99999999999999988752 233333 4455555555544 345778888888
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++++++||+|++..+++|+. ++..+++++.++|||||++++..+
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 8888889999999999998887 799999999999999999999875
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=109.21 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=71.2
Q ss_pred CCEEEEECCCCchHHHHHhh--cCCEEEEcCccccHHHHHHHHHHc------CCCeEEEEecc-ccCCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALER------GVPALIGVMAS-IRLPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~--~~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~-~~Lpfpd~sFDlV~~s 289 (637)
+.+|||||||+|.++..+++ .+..++.+ |+++.+++.|+++ ..++.+...|. ..... ...||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGV---DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 34899999999999999999 45444444 4444444444433 25688888888 33333 3569999999
Q ss_pred c-ccccCCc-CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 R-CLIPWGQ-YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~-~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. +++++.. ++...+++++.+.|+|||+|++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 5543432 157789999999999999999975
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=127.94 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=79.6
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHH---cCCCeEEEEeccccCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRLPYP 279 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~e---rg~~~~~~~~d~~~Lpfp 279 (637)
+.+...++... +++|||||||+|.++..+++.+ |+++|.++.++... +...+ ...++.+..++...+|+
T Consensus 112 ~~l~~~l~~l~--g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~--~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPLK--GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQF--EAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCCCC--CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 34455554333 4599999999999999999874 44444433222211 11111 12357888888889998
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++||+|+|..+++|.. ++..+++++.++|||||.|++..
T Consensus 187 ~~~FD~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCCcCEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999999998876 79999999999999999999974
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-12 Score=111.52 Aligned_cols=91 Identities=25% Similarity=0.362 Sum_probs=73.4
Q ss_pred EEEECCCCchHHHHHhhcC-----CEEEEcCccccHHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEeccc-
Q 006633 222 AIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRC- 291 (637)
Q Consensus 222 VLDIGCGtG~~a~~La~~~-----v~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~~Lpfpd~sFDlV~~s~~- 291 (637)
|||+|||+|..+..+++.. ...+.+ |+++.+++.++++. .++.+.+.|...+++.+++||+|+|+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gv---D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGV---DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEE---ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEE---ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998762 555555 77778887777654 6889999999999988999999999655
Q ss_pred cccCCcCCHHHHHHHHHhcccCCe
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGG 315 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG 315 (637)
++|+.+++...+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 888776577899999999999998
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-11 Score=121.72 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc----------CCEEEEcCccccHHHHHHHHHHcCC----CeEEEEeccccCCCCCC
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIRLPYPSR 281 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~----------~v~~vdisp~Dls~a~i~~A~erg~----~~~~~~~d~~~Lpfpd~ 281 (637)
++.+.++||++||||..+..+.+. .|++.|+.|.++..+..+ |.+++. ...|..+|++.|||+++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR-a~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR-AKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH-HhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 334469999999999999888765 467777766555544332 323332 27788899999999999
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+...++.+..++ ++++.|+|++|||||||.|.+-..
T Consensus 177 s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred cceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 999999999998998 899999999999999999998754
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=124.99 Aligned_cols=125 Identities=22% Similarity=0.334 Sum_probs=98.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC
Q 006633 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV 264 (637)
Q Consensus 190 Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~ 264 (637)
|+.....+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ ++|++|...+++ +|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 55554445555666777888888888877 9999999999999999998 7888888 777777776654 354
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 265 P--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 265 ~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. +.+...|-..+ .+.||-|++..+++|+..++...+++.+.++|+|||.+++-+-
T Consensus 121 ~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 121 EDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred CcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4 55554444333 3449999999999999977899999999999999999999753
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-11 Score=124.96 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=74.8
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHH----HHcCCCeEEEEeccccCCCCCCCeeEEEeccccccC
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA----LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A----~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~ 295 (637)
.+|||+|||+|.++.+|++++..++.+ |.++.+++.+ .+.++++.+...|....++ +++||+|+++.+++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~av---D~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAV---DINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 389999999999999999986544444 4444544433 3446677777777666555 6789999999999777
Q ss_pred CcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 296 GQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 296 ~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..++...+++++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 64467889999999999999977754
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.4e-11 Score=118.40 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=84.4
Q ss_pred HHHHHHhcccC-CCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 006633 206 DDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSR 281 (637)
Q Consensus 206 ~~L~~lL~~~~-g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~ 281 (637)
..+.+.+.... ....+|||+|||+|.++..|++.. ..++.+ |++..+++.+.++.. ++.+...+...++++++
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIAL---DISAGMLAQAKTKLSENVQFICGDAEKLPLEDS 97 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEE---eChHHHHHHHHHhcCCCCeEEecchhhCCCCCC
Confidence 33444444221 234589999999999999998873 322333 556667766665542 46777888888898899
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|+++.+++|.. +...++.++.++|||||.+++..+
T Consensus 98 ~fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 98 SFDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred ceeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999995554 799999999999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-11 Score=126.89 Aligned_cols=130 Identities=20% Similarity=0.218 Sum_probs=92.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..+|||||||+|.++..+++. .++++ |.++.+++.|+++. .++.+...|...+++++++||+|+++.++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgV-----D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTIL-----DQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEE-----ECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 358999999999998888764 34444 44555666655442 34667888888999999999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeCC--CCccccccC--CCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGPP--VNWESHWKG--WNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp--~~w~~~~~~--w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+|+. +...+++++.|+|||||.+++..+. ..|..+... |.. ....+++.+++++.+|+.+.
T Consensus 189 ~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~-----~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 189 EYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWML-----FPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhcc-----CCCHHHHHHHHHHCCCeEEE
Confidence 8777 7889999999999999999987642 122221100 110 11234566778888887765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=122.63 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHH---HHHH---cCCCeEEEEeccccCCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQ---FALE---RGVPALIGVMASIRLPYP 279 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~---~A~e---rg~~~~~~~~d~~~Lpfp 279 (637)
.+...+.... +++|||||||+|.++..++..+. .+++++ .+..++. .++. ....+.+...+...+|..
T Consensus 112 ~~l~~l~~~~--g~~VLDvGCG~G~~~~~~~~~g~~~v~GiD---pS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 112 RVLPHLSPLK--GRTILDVGCGSGYHMWRMLGHGAKSLVGID---PTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHhcCCCC--CCEEEEeccCCcHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 3444443333 45999999999999999888753 355553 3333332 2222 123466777777788764
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+||+|+|+.+++|+. ++..+|.++.|+|||||.|++...
T Consensus 187 -~~FD~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -CCcCEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4899999999998887 799999999999999999999753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=120.12 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GV--PALIGV 270 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~ 270 (637)
.+.....+..++......+.+|||||||+|..+..|++. +..++.+ |+++.+++.|+++ +. .+.+..
T Consensus 39 y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gv---D~S~~ml~~A~~~~~~~~~~~~v~~~~ 115 (247)
T PRK15451 39 YSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAI---DNSPAMIERCRRHIDAYKAPTPVDVIE 115 (247)
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 344444444443322223458999999999998888762 3344444 4455555555433 22 577888
Q ss_pred eccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 271 ~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+...+|++ .+|+|+++.+++|+.+++...+++++.++|||||.|+++..
T Consensus 116 ~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 116 GDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888887765 48999999999777653557899999999999999999863
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-11 Score=120.69 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc------CCCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
..+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ ..++.+...|...++++ .+|+|++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gv---D~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGI---DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 458999999999999988874 3334444 4455555555433 23577888888888775 4899999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+++|+.+++...+++++.|+|||||.|+++.+
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9999777643568899999999999999999865
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-11 Score=112.74 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=78.0
Q ss_pred CCEEEEECCCCchHHHHHhh-c--CCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCC--CCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMS-R--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLP--YPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~--~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lp--fpd~sFDlV~~ 288 (637)
..+|||+|||+|.++..|++ . +..++++ |+++.+++.|++ .+. ++.+.+.|...++ ++ +.||+|++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEE
Confidence 34899999999999999994 3 4444444 556666666654 344 5899999998887 66 89999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+++|+. +...+++++.++|++||.+++..+
T Consensus 80 ~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVLHHFP--DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 99996666 788999999999999999999875
|
... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-11 Score=115.67 Aligned_cols=143 Identities=24% Similarity=0.321 Sum_probs=108.5
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
+.|.++++ +++ +|||+|||.|.+..+|.+. ++.+.++ +++++.+..+.++|+++.-..++..-..|++++||
T Consensus 5 ~~I~~~I~--pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 5 QIIAEWIE--PGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred HHHHHHcC--CCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCcc
Confidence 34666654 444 9999999999999999884 8888888 78888898999999886555444332349999999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC-Ccccc---------------ccCCCCchhhhHHhHhhHH
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV-NWESH---------------WKGWNRTTEDLKSEQNGIE 348 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~-~w~~~---------------~~~w~~t~e~l~~~~~~ie 348 (637)
.|+.+.++.+.. +++.+|+|+.|+ |...+++-|+. +|..+ ...|..|+.-..-.....+
T Consensus 78 ~VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe 152 (193)
T PF07021_consen 78 YVILSQTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE 152 (193)
T ss_pred EEehHhHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence 999999998887 799999999777 66788887654 34222 2237777666666677788
Q ss_pred HHHHHhceeeec
Q 006633 349 TIARSLCWKKLI 360 (637)
Q Consensus 349 ~la~~l~w~~v~ 360 (637)
++++.++++...
T Consensus 153 ~lc~~~~i~I~~ 164 (193)
T PF07021_consen 153 DLCRELGIRIEE 164 (193)
T ss_pred HHHHHCCCEEEE
Confidence 888888876554
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=115.95 Aligned_cols=208 Identities=17% Similarity=0.234 Sum_probs=139.6
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
.|...++... .++|.|+|||+|..+..|+++ +..+.++ |.+.+|+..|+++.+++.|..+|..... ++..+|
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~d 94 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTD 94 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccc
Confidence 3444555443 558999999999999999998 5666677 7888999999999999999999987775 567899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccCc
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 364 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~~ 364 (637)
+++++.+| ||.+ |...+|..+...|.|||.|.+..|. |+.. .....+.+.++..-|........
T Consensus 95 llfaNAvl-qWlp-dH~~ll~rL~~~L~Pgg~LAVQmPd-N~de-------------psH~~mr~~A~~~p~~~~l~~~~ 158 (257)
T COG4106 95 LLFANAVL-QWLP-DHPELLPRLVSQLAPGGVLAVQMPD-NLDE-------------PSHRLMRETADEAPFAQELGGRG 158 (257)
T ss_pred hhhhhhhh-hhcc-ccHHHHHHHHHhhCCCceEEEECCC-ccCc-------------hhHHHHHHHHhcCchhhhhCccc
Confidence 99999999 8888 8999999999999999999998872 2111 11234666777666655443222
Q ss_pred EEEEeccCCCc-cccccccccCCCCCcccCCcCCccccccccccccCcccchhhhhcCCccccCccccccCCcccccCcc
Q 006633 365 LAIWQKPTNHV-HCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAV 443 (637)
Q Consensus 365 ~aIWqKP~~~~-~c~~~~~~~~~~~~c~~~~~~~~wy~~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~i~~~~~ 443 (637)
. -++|+-.. .+|.... +--|.-+-=..++|.+|..-- ...+++.|..+.+|=+||.
T Consensus 159 ~--~r~~v~s~a~Yy~lLa----~~~~rvDiW~T~Y~h~l~~a~------aIvdWvkgTgLrP~L~~L~----------- 215 (257)
T COG4106 159 L--TRAPLPSPAAYYELLA----PLACRVDIWHTTYYHQLPGAD------AIVDWVKGTGLRPYLDRLD----------- 215 (257)
T ss_pred c--ccCCCCCHHHHHHHhC----cccceeeeeeeeccccCCCcc------chhhheeccccceeccccC-----------
Confidence 2 25554322 3444332 224442222233444443321 1234666666777666663
Q ss_pred cCcchhcchhhHHHHHHHHHHHHHhhh
Q 006633 444 DGVTAEMFREDTALWKKRVTYYKSVDY 470 (637)
Q Consensus 444 ~g~~~~~f~~d~~~w~~~v~~y~~~~~ 470 (637)
.+.|++-+..|..++.
T Consensus 216 -----------e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 216 -----------EEERQRFLDRYLALLA 231 (257)
T ss_pred -----------HHHHHHHHHHHHHHHH
Confidence 3556777778887664
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=115.81 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||||||+|.++..|++. +..++++ |+++.+++.|+++...+.+..++... |+++++||+|+++.+++|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~gi---DiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGV---EINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 348999999999999999876 4555555 77888888888765566777777766 88999999999999999987
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++...+++++.|++ ++++++..
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 646789999999998 56777764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=113.56 Aligned_cols=110 Identities=20% Similarity=0.320 Sum_probs=80.2
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCE--EEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~--~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDl 285 (637)
+.+.++... ..++||+|||.|+.+.+|+++|.. ++|.++..+.. ..+.|.+.++++...+.|.....++ +.||+
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 444444333 348999999999999999999754 45554433332 3346667788898888888777775 68999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+++.+++++..+....+++.+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999999988887677889999999999999999864
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=119.67 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
+.+|||+|||+|..+..+++. . ++++|+ ++.+++.|+++ + .++.+...+...+++++++||+|++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~-----s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDM-----TPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECC-----CHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 349999999999877766553 2 455544 44555555442 3 2567788888889998899999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+++++. +...++.++.|+|||||.|++++.
T Consensus 153 ~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 153 NCVINLSP--DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98886555 788999999999999999999864
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=115.21 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=74.6
Q ss_pred EEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
+|||||||+|.++..+++. +..++++ |+++.+++.+.++ +. .+.+...|....|++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gi---d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGY---TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 7999999999999999876 3444444 4455666555543 22 356777777666665 589999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|+. +...+++++.++|||||++++..+
T Consensus 78 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIK--DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCC--CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8876 789999999999999999999875
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-11 Score=107.27 Aligned_cols=93 Identities=23% Similarity=0.286 Sum_probs=54.4
Q ss_pred EEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEeccccccCC
Q 006633 223 IDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 223 LDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~ 296 (637)
||||||+|.++..++++ .++++|+++.++..+..++................... ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999998876 46778887777644433333322223333333322221 123699999999999888
Q ss_pred cCCHHHHHHHHHhcccCCeEE
Q 006633 297 QYADGLYLIEVDRVLRPGGYW 317 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~L 317 (637)
+ +...+++++.++|||||.|
T Consensus 80 ~-~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E-DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--HHHHHHHHTTT-TSS-EE
T ss_pred h-hHHHHHHHHHHHcCCCCCC
Confidence 4 8999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=113.82 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=75.0
Q ss_pred EEEEECCCCchHHHHHhh-cCCEEEEcCccccHHHHHHHH-----HHcCCCeE-EEEeccccCC-CCCCCeeEEEecccc
Q 006633 221 TAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFA-----LERGVPAL-IGVMASIRLP-YPSRAFDMAHCSRCL 292 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~v~~vdisp~Dls~a~i~~A-----~erg~~~~-~~~~d~~~Lp-fpd~sFDlV~~s~~L 292 (637)
.+|+||||||..-.++-- .+..++.++ .++.|.+++ ..+...+. |++++.+.+| ++++++|.|+|..++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lD---pn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLD---PNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeC---CcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 689999999987666653 344555553 333444333 33344455 8899999999 899999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+... ++.+.|.|+.|+|||||.+++..+
T Consensus 156 CSve--~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 156 CSVE--DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred eccC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 7777 899999999999999999999865
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=123.38 Aligned_cols=112 Identities=26% Similarity=0.366 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYP 279 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfp 279 (637)
..++.+.+.+.+.++. +|||||||+|.++..++++ +..++.+ |+++.+++.|+++. ..+.+...+...+
T Consensus 154 ~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~gi---DlS~~~l~~A~~~~~~l~v~~~~~D~~~l--- 225 (383)
T PRK11705 154 AKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGV---TISAEQQKLAQERCAGLPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHhccCeEEEEECchhhc---
Confidence 3445555666555544 9999999999999999876 6666666 66778888777653 3455665565444
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||.|++..+++|....+...+++++.++|||||++++...
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4789999999999888643668899999999999999999754
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=113.22 Aligned_cols=100 Identities=17% Similarity=0.060 Sum_probs=76.8
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHH-HHc----------------CCCeEEEEeccccCCCC-C
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA-LER----------------GVPALIGVMASIRLPYP-S 280 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A-~er----------------g~~~~~~~~d~~~Lpfp-d 280 (637)
+++|||+|||.|..+.+|+++|..++++ |+++.+++.+ .+. +..+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gv---D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGV---ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEE---eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 3499999999999999999997655555 5555555543 222 23467778887776643 4
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.||.|+...+++|++++....++..+.++|||||++++.+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 67999999998989987667789999999999999877664
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=107.94 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=81.3
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..++.+ .++++|.++.++..+.. .+.+.+. ++.+...+...++. +++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 458999999999999888753 34555554433332222 2223343 47888888888776 779999998642
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
. +.+.++.++.++|||||.+++..+.. ....++++++.++|....
T Consensus 122 --~--~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred --c--CHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEee
Confidence 2 67889999999999999999985421 123477788888886543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=116.78 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCch----HHHHHhhc-------CCEEEEcCccccHHHHHHHHHHcC-----------------------
Q 006633 218 SIRTAIDTGCGVAS----WGAYLMSR-------NILAVSFAPRDTHEAQVQFALERG----------------------- 263 (637)
Q Consensus 218 ~~r~VLDIGCGtG~----~a~~La~~-------~v~~vdisp~Dls~a~i~~A~erg----------------------- 263 (637)
...+|||+|||+|. ++..|++. ++.++++ |+++.+++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~---Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILAT---DIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEE---ECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 34599999999994 55555543 2333333 66667777666431
Q ss_pred ---------CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 ---------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ---------~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.|.+.|....+++.++||+|+|..+++|+.+++...++.++.++|+|||+|++..
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1367778888888877899999999999988875466789999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=116.38 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=94.3
Q ss_pred hhcceEeecCCeeecCCCCCCCcccHHHHHHHHHHHhcc-cCC----CCCEEEEECCCCchHHHHHhhcCCEEEEcCccc
Q 006633 176 KNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDG----SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250 (637)
Q Consensus 176 ~~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~-~~g----~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~D 250 (637)
....|++.+|-+..++.-+ ........+.+.+..+. .++ .+++|||+|||+|.++..|++.+..++++ |
T Consensus 45 la~~wwd~~g~~~~Lh~mn---~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GI---D 118 (282)
T KOG1270|consen 45 LAFTWWDEEGVRHPLHSMN---QTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGI---D 118 (282)
T ss_pred hcccccccccchhhhhhcc---chhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEee---c
Confidence 3457888777555544322 12223333344444422 233 25789999999999999999998877777 7
Q ss_pred cHHHHHHHHHHcC--CC---------eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEE
Q 006633 251 THEAQVQFALERG--VP---------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 251 ls~a~i~~A~erg--~~---------~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
.++.+++.|++.. .| +.+...+.+.+ .+.||.|+|+.+++|.. |+..++..+.+.|||||.+++
T Consensus 119 ~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~--dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 119 ASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVK--DPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred ccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHh--CHHHHHHHHHHHhCCCCceEe
Confidence 7888888887542 01 12222233332 24499999999999999 899999999999999999999
Q ss_pred EeC
Q 006633 320 SGP 322 (637)
Q Consensus 320 s~p 322 (637)
++-
T Consensus 194 tti 196 (282)
T KOG1270|consen 194 TTI 196 (282)
T ss_pred eeh
Confidence 975
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=112.19 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecc
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~ 273 (637)
+.+...+.+.+.++.......+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +. ++.+...+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAV---DISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34455556666665212234599999999999999999885444444 5555566555543 22 567887777
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccc----cCCCCc---hhhhHHhHhh
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNRT---TEDLKSEQNG 346 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~----~~w~~t---~e~l~~~~~~ 346 (637)
..++ ++||+|++..+++|+..++...++.++.+++++|+++.+... ..+.... ..|... ........++
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK-TAWLAFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC-chHHHHHHHHHhhCcCcccccceEEecHHH
Confidence 7665 789999999999888644677899999999998877766421 1111000 001000 0111112356
Q ss_pred HHHHHHHhceeeecc
Q 006633 347 IETIARSLCWKKLIQ 361 (637)
Q Consensus 347 ie~la~~l~w~~v~~ 361 (637)
++++++..+|+.+..
T Consensus 190 ~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 190 LERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHHcCceeeee
Confidence 777888888876654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-10 Score=112.33 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=74.2
Q ss_pred cCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCCCCeeEEEec
Q 006633 215 KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.....+++||+|||.|.++..|+.+ .++++|+ ++..++.|++|. ..+.+.+.+.... .|.+.||+|+++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDi-----s~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~S 113 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDI-----SPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLS 113 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES------HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred CccccceeEecCCCccHHHHHHHHhhCceEEEeC-----CHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEe
Confidence 3444569999999999999999998 5666655 666777777663 4578888776543 578999999999
Q ss_pred cccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++++.+ ++...++..+...|+|||.|++.+.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99977763 2567899999999999999999864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-10 Score=125.74 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCC--CCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP--YPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lp--fpd~sFDlV~~s~ 290 (637)
+.+|||+|||+|.++..|++. +..++++ |+++.+++.|+++ +.+..+..+|...+| +++++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGI---DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGI---DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 349999999999998888765 3344444 4555555555433 345677778887887 8889999999999
Q ss_pred ccccCC-----------cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWG-----------QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~-----------~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++|. .++...+++++.|+|||||.+++...
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 887653 12567899999999999999999854
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=108.92 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEecc-ccCC--CCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMAS-IRLP--YPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~-~~Lp--fpd~sFDlV~~s~ 290 (637)
..+|||+|||+|.++..|++. .++++|+++..+..+..+.. ..+ .++.+...++ ..++ +++++||+|+++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 458999999999999998875 35666665443333332222 223 3578888887 6666 7788999999976
Q ss_pred ccccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. +|... ....+++++.++|||||.|++..+
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 44320 146799999999999999999864
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=105.93 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=83.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lp 277 (637)
+.+.+.+.+...+ ..+|||+|||+|.++..+++.. ..++.+ |+++.+++.+.++. ..+.+...+...++
T Consensus 27 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~i---D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 27 WRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGV---DFSSEMLEVAKKKSELPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEE---ECCHHHHHHHHHHhccCCCceEEecchhcCC
Confidence 3344455544333 4599999999999999988762 234444 45556665555543 24677778888888
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|+++..+++.. +...+++++.++|+|||++++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8888999999999886666 799999999999999999998754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=106.81 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=81.4
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc------CCCeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~ 275 (637)
...+...+...+ ..+|||+|||+|.++..+++.. ..++.+ |+++.+++.+.++ ..++.+...+...
T Consensus 40 ~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 40 RRKTIKWLGVRP--GDKVLDLACGTGDLAIALAKAVGKTGEVVGL---DFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHHhCCCC--CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEE---eCCHHHHHHHHHhhcccccccCeEEEeccccc
Confidence 334444444333 3489999999999999888753 334444 4444555555443 1346777788888
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++.++||+|+++.+++++. +...++.++.++|+|||.+++...
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEe
Confidence 888788999999999997766 789999999999999999998753
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-09 Score=95.09 Aligned_cols=105 Identities=18% Similarity=0.084 Sum_probs=70.6
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cC-CCeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RG-VPALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg-~~~~~~~~d~~~ 275 (637)
...+.+.+....+ .+|||+|||+|.++..++++ .++++|+ ++.+++.+++ .+ .++.+...+...
T Consensus 8 ~~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 8 RALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIER-----NPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcC-----CHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 3445555544443 39999999999999999886 2445554 4444444332 22 245666555543
Q ss_pred -CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 276 -LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 276 -Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++....+||.|++..... ....+++++.++|||||+|++..
T Consensus 81 ~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cChhhcCCCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 333346899999976442 45689999999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=111.95 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eE
Q 006633 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--AL 267 (637)
Q Consensus 193 ~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~ 267 (637)
.+..|+.|.........+++......+.+|||+|||+|.++..+++.+ ++++|+++..+..+..+.. .++.. ..
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~~ 212 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRLQ 212 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcceE
Confidence 344455555555555444443222234599999999999998888764 5566665543333332222 22332 22
Q ss_pred EEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 268 ~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...+ ..+..+++||+|+++.... ....++.++.++|||||+|++++.
T Consensus 213 ~~~~~--~~~~~~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 213 VKLIY--LEQPIEGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEecc--cccccCCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 33222 2344567899999976431 345789999999999999999975
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.3e-09 Score=100.52 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcCCC-eEEEEecc
Q 006633 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMAS 273 (637)
Q Consensus 199 ~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~ 273 (637)
.+.+.-...|.+.+.... ..+|||+|||+|.++..++++ . ++++|+++..+..+... +...+.. +.+...|.
T Consensus 14 ~~~d~~t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~~~d~ 90 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVVQSDL 90 (170)
T ss_dssp TSHHHHHHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEEESST
T ss_pred CCCCHHHHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccccccc
Confidence 444555556666666543 348999999999999999987 3 55666644333322222 2233444 66766665
Q ss_pred ccCCCCCCCeeEEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. +++++.||+|+|+.-+ |...+ -...++.+..+.|||||.|++...
T Consensus 91 ~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 91 FE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33 3447899999999865 32221 246789999999999999988753
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=108.28 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=80.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCC-CC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP-YP 279 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lp-fp 279 (637)
++.+...+... ...+|||||||+|.++..+++.+..++.+ |+++.+++.+.++ +..+.+...+....+ ..
T Consensus 37 ~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~i---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGL--FGKRVLDVGCGGGILSESMARLGADVTGI---DASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEE---cCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 34444444322 34589999999999999998886544444 4445555544432 344566666665554 34
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
++.||+|+++.+++|.. +...++.++.++|+|||.++++.+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 57899999999997777 7889999999999999999998653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-10 Score=97.39 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=68.0
Q ss_pred eeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC--CCC-CccceeeeccccccCCCCcC
Q 006633 482 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--TYP-RTYDLIHADSIFSLYKDRCE 558 (637)
Q Consensus 482 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~--~yp-~t~Dl~H~~~lfs~~~~~c~ 558 (637)
||+|||.|-++..|.+++. .+|+.+|.++.+++.+.++.--.-..-.+..+. ++| ++||+|++.++|... -+
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 8999999999999999833 466667777788888888776332111122222 344 999999999999876 56
Q ss_pred HHHHHHHHhhcccCCcEEEE
Q 006633 559 MEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 559 ~~~~l~e~dRiLrPgG~~i~ 578 (637)
.+.+|-|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 78999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=112.35 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEE
Q 006633 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALI 268 (637)
Q Consensus 192 g~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~ 268 (637)
..|..|++|.....+...+++......+.+|||+|||+|.++...++. .+.++|++|..+..+.. .+..+++...+
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~-N~~~N~~~~~~ 213 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARE-NAELNGVEDRI 213 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHH-HHHHTT-TTCE
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHH-HHHHcCCCeeE
Confidence 446678899888888888877654445569999999999988887776 47788887755544333 44455655444
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.. ........||+|+++-... -...++..+.++|+|||+|++++-
T Consensus 214 ~v~~--~~~~~~~~~dlvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 214 EVSL--SEDLVEGKFDLVVANILAD-----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EESC--TSCTCCS-EEEEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEE--ecccccccCCEEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 4322 2234458899999986442 344578889999999999999975
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=111.15 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=78.5
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCeEEE
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIG 269 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~~~~ 269 (637)
|+.|.......+.+.+......+.+|||+|||+|.++..+++.+ ++++|+ ++.+++.|+++ ++...+
T Consensus 98 fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDi-----s~~~l~~A~~n~~~~~~~~~~- 171 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDI-----DPQAVEAARENAELNGVELNV- 171 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEEC-----CHHHHHHHHHHHHHcCCCceE-
Confidence 33444433334444443222234599999999999988887764 445555 44455444433 331111
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHH
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 349 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~ 349 (637)
.++..+.+||+|+++.... ....++.++.++|||||++++++... .....+..
T Consensus 172 -----~~~~~~~~fD~Vvani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~~-----------------~~~~~v~~ 224 (250)
T PRK00517 172 -----YLPQGDLKADVIVANILAN-----PLLELAPDLARLLKPGGRLILSGILE-----------------EQADEVLE 224 (250)
T ss_pred -----EEccCCCCcCEEEEcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECcH-----------------hhHHHHHH
Confidence 1122223799999975331 34578899999999999999986511 11234556
Q ss_pred HHHHhceeeec
Q 006633 350 IARSLCWKKLI 360 (637)
Q Consensus 350 la~~l~w~~v~ 360 (637)
.++..+|+.+.
T Consensus 225 ~l~~~Gf~~~~ 235 (250)
T PRK00517 225 AYEEAGFTLDE 235 (250)
T ss_pred HHHHCCCEEEE
Confidence 67777786654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=107.77 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCEEEEECCCCchHHHHHhhc----C--CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----N--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~--v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~s~ 290 (637)
..+|||+|||+|.++..|++. + ..++.+ |+++.+++.|+++. .++.+...+...+++++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI---DPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE---cCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 458999999999998888752 2 345555 66777887777653 235566666667777788999999999
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+++|+.+++...+++++.|++| |.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9988874234679999999998 455554
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=106.87 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=75.6
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHH-HHcC----------------CCeEEEEeccccCCCC-CC
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA-LERG----------------VPALIGVMASIRLPYP-SR 281 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A-~erg----------------~~~~~~~~d~~~Lpfp-d~ 281 (637)
.+|||+|||.|..+.+|+++|..++.+ |+++..++.+ .+++ ..+.+.++|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~av---D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGV---ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEE---ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 489999999999999999997666666 5565655543 2333 2356677777777533 35
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.||+|+-..+++|++++....++..+.++|||||++++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 899999999999998767789999999999999975553
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=111.24 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC----------CCeEEEE
Q 006633 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----------VPALIGV 270 (637)
Q Consensus 202 ~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg----------~~~~~~~ 270 (637)
+..++.+.+++... ...+.+|||+|||+|.++..|++++..++.+ |+++.+++.|+++. ..+.+..
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gv---D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSAS---DISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 44455666666532 1234599999999999999999986555444 55666666555442 2345665
Q ss_pred eccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCcccc--------ccCCCCchhhhHH
Q 006633 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESH--------WKGWNRTTEDLKS 342 (637)
Q Consensus 271 ~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~--------~~~w~~t~e~l~~ 342 (637)
.|...+ +++||+|+|..+++|++.+....++..+.+ +.+||.++ +..+..+... +.+..........
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeC
Confidence 554433 578999999999989875233456666665 45666644 4333222110 0010000011111
Q ss_pred hHhhHHHHHHHhceeee
Q 006633 343 EQNGIETIARSLCWKKL 359 (637)
Q Consensus 343 ~~~~ie~la~~l~w~~v 359 (637)
..++++++.+..+|+..
T Consensus 279 s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 279 AEADVERALKKAGWKVA 295 (315)
T ss_pred CHHHHHHHHHHCCCEEE
Confidence 23557778888888754
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-09 Score=110.47 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=86.6
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcC-C--CeEEEEeccccCCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG-V--PALIGVMASIRLPYPS 280 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg-~--~~~~~~~d~~~Lpfpd 280 (637)
.+++...++ +-.+++|||||||.|.++-.|+.+|. .+++++|....-.|.+++++-. . ...+.-...+.+|. .
T Consensus 104 W~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 345555553 33466999999999999999999975 5788888777666665554332 2 23333356788887 7
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.||+|+|..+|.|.. ++-..|.++...|+|||.+++.+
T Consensus 181 ~~FDtVF~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRR--SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CCcCEEEEeeehhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence 8999999999999988 79999999999999999999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=111.02 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeEEE
Q 006633 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIG 269 (637)
Q Consensus 193 ~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~~~ 269 (637)
.|-.|++|.........+++......+++|||+|||+|.++...++.| +.++|++|..+..++- .++.++++....
T Consensus 137 PGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e-Na~~N~v~~~~~ 215 (300)
T COG2264 137 PGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE-NARLNGVELLVQ 215 (300)
T ss_pred cccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH-HHHHcCCchhhh
Confidence 344566666666666666665444466799999999999999988874 6677776654443333 344555553111
Q ss_pred EeccccCCCCC-CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 270 VMASIRLPYPS-RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~Lpfpd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
......+..+. +.||+|+++-... -...+..++.+.|||||++++++-
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANILA~-----vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANILAE-----VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred cccccchhhcccCcccEEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEee
Confidence 11122233344 5899999986331 234688999999999999999974
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=100.17 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..++.. .++++|.++.++..+.. .+.+.+. ++.+..++...++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 458999999999998888754 35566554433332221 2223343 4788888887764 357899999865 3
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. +...+++.+.++|||||.+++..
T Consensus 119 --~--~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 --A--SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --h--CHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 56678899999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=106.88 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+.+|||+|||+|.++..++++ .++++|+++ + ....++.+..+|....+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~------~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP------M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc------c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 348999999999999998886 256666644 1 11234677788877643 66789999
Q ss_pred EEeccccccCCcC---C-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQY---A-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~---d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+.+. ++... + ...+|.++.++|||||.|++...
T Consensus 121 V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9998766 44321 1 14689999999999999999753
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=102.91 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEec
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMA 272 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d 272 (637)
....+.+.+...++. +|||+|||+|..+..|++. .++++|++ +.+++.|++ .+. .+.+..+|
T Consensus 60 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~-----~~~~~~a~~~l~~~~~~~~v~~~~~d 132 (205)
T PRK13944 60 MVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIV-----KELAIYAAQNIERLGYWGVVEVYHGD 132 (205)
T ss_pred HHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCC-----HHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 345566666555544 9999999999999888764 24555554 444444432 333 36777777
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
........++||+|++..++.+++ .++.++|+|||.|++..
T Consensus 133 ~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 133 GKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cccCCccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 766544567899999988775443 57889999999998864
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=113.23 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEe
Q 006633 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVM 271 (637)
Q Consensus 196 ~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~ 271 (637)
++....+.-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++..+..+..... ..+....+...
T Consensus 176 Fs~~~lD~gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~ 252 (342)
T PRK09489 176 FSRDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFAS 252 (342)
T ss_pred CCCCCCCHHHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEc
Confidence 333444444455566555332 237999999999999999886 34555555444433332222 33455555555
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|... ..++.||+|+|+..+|..... ..+.++.++.+.|||||.|+++.+
T Consensus 253 D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 253 NVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 5433 235789999999988543211 357899999999999999999875
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=99.12 Aligned_cols=131 Identities=13% Similarity=-0.001 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~L 276 (637)
+.....+.+.+....+ .+|||+|||+|.++..++++ .++++|+++..+..++.+.. ..+. .+.+...+.. .
T Consensus 17 ~~~r~~~~~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~~-~ 92 (187)
T PRK08287 17 EEVRALALSKLELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEAP-I 92 (187)
T ss_pred HHHHHHHHHhcCCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCch-h
Confidence 3333444455554443 48999999999999998875 35566665433332222221 2222 4566655542 3
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
++ .++||+|++..... ....++.++.++|+|||++++..... ....++..+.++.+|
T Consensus 93 ~~-~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 93 EL-PGKADAIFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTFILL-----------------ENLHSALAHLEKCGV 149 (187)
T ss_pred hc-CcCCCEEEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEEecH-----------------hhHHHHHHHHHHCCC
Confidence 33 35799999976542 45668999999999999999874311 112345567777777
Q ss_pred eee
Q 006633 357 KKL 359 (637)
Q Consensus 357 ~~v 359 (637)
+.+
T Consensus 150 ~~~ 152 (187)
T PRK08287 150 SEL 152 (187)
T ss_pred Ccc
Confidence 544
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-09 Score=104.31 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=71.3
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCC---CCCCCeeEEEeccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP---YPSRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lp---fpd~sFDlV~~s~~ 291 (637)
.++||||||+|.++..++++ .++++|+++..+..+..+.. +.+ .++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~-~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN-KLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH-HhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 48999999999999999886 45666654433333222222 223 36788888876654 56679999998765
Q ss_pred cccCCcCC-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYA-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. +|.... ...++.++.|+|||||.|++...
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 665311 15789999999999999999853
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=109.03 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=79.8
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEE
Q 006633 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (637)
Q Consensus 195 ~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~ 270 (637)
-+.....|.-.+.|.+-++...+. +|||+|||.|.++..|++. .++.+|++...+..++...+ .+++......
T Consensus 137 VFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~-~N~~~~~~v~ 213 (300)
T COG2813 137 VFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA-ANGVENTEVW 213 (300)
T ss_pred CCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-HcCCCccEEE
Confidence 334444555566677777655443 8999999999999999987 35555554333332222222 2333331223
Q ss_pred eccccCCCCCCCeeEEEeccccccCCcCCHH----HHHHHHHhcccCCeEEEEEeC
Q 006633 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYADG----LYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 271 ~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~----~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+....+.++ +||+|+|+.-||.-.. -.. +++.+..+.|++||.|+++..
T Consensus 214 ~s~~~~~v~~-kfd~IisNPPfh~G~~-v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPVEG-KFDLIISNPPFHAGKA-VVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eecccccccc-cccEEEeCCCccCCcc-hhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3334445555 8999999997743332 233 789999999999999999964
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.2e-09 Score=102.31 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEec-cccCCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMA-SIRLPYPS 280 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d-~~~Lpfpd 280 (637)
.+..++-.+++.+.+...+-|||||||+|..+..|.+.+...+++ |++..|++.|.++-+...+...| .+-+||+.
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGv---DiSpsML~~a~~~e~egdlil~DMG~Glpfrp 110 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGV---DISPSMLEQAVERELEGDLILCDMGEGLPFRP 110 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEee---cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCC
Confidence 344556667777666566799999999999999999888666666 77777887777665443343334 37899999
Q ss_pred CCeeEEEeccccccCCcC------C----HHHHHHHHHhcccCCeEEEEEeCC
Q 006633 281 RAFDMAHCSRCLIPWGQY------A----DGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~------d----~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
++||.|++..++ +|.-. + ...++..++.+|++|+..++.-.|
T Consensus 111 GtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 111 GTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 999999997776 55321 2 234688899999999999998543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=100.39 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=66.0
Q ss_pred CEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-C-CCCCCCeeEEEeccccccCC
Q 006633 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-L-PYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-L-pfpd~sFDlV~~s~~L~h~~ 296 (637)
.+|||+|||+|.++..+++. +..++++ |+++.+++.+.++++ .+...+... + ++++++||+|+++.+++|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 38999999999999988765 4444444 556677777766654 455556544 4 47788999999999997776
Q ss_pred cCCHHHHHHHHHhcccC
Q 006633 297 QYADGLYLIEVDRVLRP 313 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKP 313 (637)
++..+++++.|++++
T Consensus 90 --d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 --NPEEILDEMLRVGRH 104 (194)
T ss_pred --CHHHHHHHHHHhCCe
Confidence 799999999887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=99.15 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCCCC-CCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYP-SRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lpfp-d~sFDlV~~s~~L 292 (637)
..+|||+|||+|.++..+++.+..++.+ |.++.++..+++ .+. ++.+...+...++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~i---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGI---DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999888775444444 444445444433 233 467777776666544 4789999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|.. +...++.++.++|+|||.++++.+
T Consensus 123 ~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 7776 799999999999999999999865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=98.83 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=69.3
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEeccccccC
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~ 295 (637)
.+|||+|||+|.++..+++++..++.+ |+++.+++.+++ .+..+.+...|....+ .++||+|+++..+++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTT---DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 489999999999999999885433333 444455444433 3455666666655433 4589999999877655
Q ss_pred CcC-------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 296 GQY-------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 296 ~~~-------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
... ....++.++.|+|||||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 421 035689999999999999999864
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=110.81 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=75.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccC--CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRL--PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~L--pfpd~sFDlV~~s~~ 291 (637)
...+||||||+|.++..++.+ .++++++.+..+..+..+. .+.+ .++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka-~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI-ELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 348999999999999999986 5667777655554444333 3344 3677888887654 578999999998765
Q ss_pred cccCCcCCH------HHHHHHHHhcccCCeEEEEEe
Q 006633 292 LIPWGQYAD------GLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 292 L~h~~~~d~------~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. +|+. .. ..++.++.|+|+|||.+.+.+
T Consensus 202 d-PW~K-krHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 V-PWDK-KPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-Cccc-cchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 7764 22 579999999999999999975
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=109.40 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----CC----Ce
Q 006633 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GV----PA 266 (637)
Q Consensus 199 ~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g~----~~ 266 (637)
.+.|.-.+.+.+.++...+ .+|||+|||+|.++..++++ .++++|++ +.+++.|+++ +. .+
T Consensus 211 ~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S-----~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 211 TGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES-----PMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred CCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECC-----HHHHHHHHHHHHHcCcccCceE
Confidence 3344444556666664332 48999999999999999886 35555554 4444444432 22 34
Q ss_pred EEEEeccccCCCCCCCeeEEEeccccccCC---cCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWG---QYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 267 ~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~---~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+...|... .+++.+||+|+|+..++.-. .+...+++.++.++|||||.|+++.
T Consensus 284 ~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 EFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 555555432 23456899999998774321 1124578999999999999999995
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=101.83 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEec
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMA 272 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d 272 (637)
.....+.+.+...++. +|||||||+|.++..|++. .++++++ ++.+++.++++ +. ++.+..+|
T Consensus 63 ~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~-----~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 63 HMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIER-----IPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred HHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeC-----CHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 3445566666665554 9999999999999888765 2455555 44444444432 33 57888888
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+.+.+.||+|++.....+. ...+.+.|||||.|++..
T Consensus 136 ~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccCCCcCCCcCEEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 76665667889999998765332 246777999999999863
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=101.66 Aligned_cols=111 Identities=24% Similarity=0.249 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccc
Q 006633 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~ 274 (637)
....+.+.++++.. .....+|||||||+|.++..|++.+..++.+ |+++.+++.|+++ +. .+.+...+
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVAS---DISPQMVEEARERAPEAGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccCcEEEEcC--
Confidence 34445555555431 1224589999999999999999886444444 5555555555443 22 45666655
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
++..+++||+|++..+++|+..++...++.++.+.+++++.+.
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4455688999999999988875466788899998876555443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=100.30 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
....+.+.+...++. +|||||||+|.++..|++. . ++++++++..+..+... ..+.+. ++.+...|.....
T Consensus 65 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~-~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR-LRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCeEEEECCcccCC
Confidence 345566666665544 9999999999999998876 2 55666654333322222 222333 5777777776554
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.....||+|++.....+. ...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 445689999987654332 356889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=105.90 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=76.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH----HcCC--CeEEEEeccccCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIRLP 277 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~----erg~--~~~~~~~d~~~Lp 277 (637)
+.+.+.+...+ ..+|||||||+|.++..++++ +..++.+ |. +.+++.++ +.+. .+.+...|....+
T Consensus 139 ~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPELDSTIL---NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHCCCCEEEEE---ec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 34445544443 349999999999999999887 3444444 32 23333333 3343 3677777876666
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++. +|+|+++.++|+|.++....+++++.++|||||.+++...
T Consensus 213 ~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 YPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 654 6999999999888753346899999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-08 Score=98.03 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEe
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVM 271 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~ 271 (637)
...+++.+.+.+.. ...+|||+|||+|.++..+++. .++++|++ +.+++.+. ..+. ++.+...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~-----~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAVDIS-----PEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 44555556555532 2348999999999999999886 34555554 44444443 2343 3677777
Q ss_pred ccccCCCCCCCeeEEEecccccc------CCcC------------------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIP------WGQY------------------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h------~~~~------------------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+... ++++++||+|+++.-+.. +..+ ....++.++.++|+|||.+++..
T Consensus 145 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 145 DWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7654 466789999999754422 1110 12367899999999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-09 Score=104.93 Aligned_cols=135 Identities=20% Similarity=0.257 Sum_probs=95.1
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-CC-CCCCCeeEEEeccc
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP-YPSRAFDMAHCSRC 291 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-Lp-fpd~sFDlV~~s~~ 291 (637)
.+.-+++||+|||||.++..|..+ ..+++ |+|++|+..|.+++..-.+.+++... ++ .....||+|.+..+
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 334679999999999999999877 44444 77999999999998765555555442 22 45678999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC--CCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecc
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p--p~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
+.++. +.+.++.-+...|+|||.|.|+.- +..|.... .....+-.....+.......+++.+..
T Consensus 198 l~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l----~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 198 LPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL----GPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred HHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCCeec----chhhhhccchHHHHHHHHhcCceEEEe
Confidence 97666 799999999999999999999953 12221111 111111222334666777777776653
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-09 Score=103.64 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=68.6
Q ss_pred CEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEE----EEeccccCCCC--CCCeeEEEeccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALI----GVMASIRLPYP--SRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~----~~~d~~~Lpfp--d~sFDlV~~s~~ 291 (637)
+.++|+|||+|..+..+++. .|+++ |++++|++.|.+....... ...+....++. ++|.|||+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIat-----D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIAT-----DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheee-----cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 48999999999777777776 56666 5578899888765322111 11122223444 899999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCe-EEEEE
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGG-YWILS 320 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG-~Lvls 320 (637)
+ ||. |.+.+++++.|+||+.| .+++-
T Consensus 110 ~-HWF--dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 110 V-HWF--DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred H-Hhh--chHHHHHHHHHHcCCCCCEEEEE
Confidence 9 999 89999999999999877 55554
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-08 Score=97.75 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=66.2
Q ss_pred CEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 220 RTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.+|||+|||+|.++..+++.+ ++++|+++..+..+.. .+...+..+.+...|... .+++++||+|+++.-+.+-.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 489999999999999988764 4555554433322221 222234556666666544 34677899999986442221
Q ss_pred cC-------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QY-------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~-------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ....++.++.++|||||.+++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 10 134578889999999999998754
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-08 Score=104.58 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC--EEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRA 282 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v--~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~s 282 (637)
..+.++....++. +|||+|||+|.++..++..+. .++|+++.++..+..+.. ..+. .+.+...|...+|+++++
T Consensus 172 ~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 172 RAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCC
Confidence 3444454444444 899999999999887776654 445554433333222221 2233 357778899999988899
Q ss_pred eeEEEecccccc---CCc----CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIP---WGQ----YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h---~~~----~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.-+.. ... +....++.++.|+|||||++++..|
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 999999743211 010 0246899999999999999999876
|
This family is found exclusively in the Archaea. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-08 Score=95.91 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHH----hhcc--cchhh
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 528 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~----eRgl--~~~~~ 528 (637)
+.|++++-.-..+...+.. ..+|||+|||+|.++.+|+. .+- ..|+.+|.++.++..+. +.|+ +-.++
T Consensus 27 ~~~~~~~~d~l~l~~~l~~---g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG---GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 4899887543333343444 46899999999998887764 221 35677777767776554 3444 33344
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE--EeccCC
Q 006633 529 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR--IADHEN 606 (637)
Q Consensus 529 ~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~--~~~~e~ 606 (637)
.-.+.+.. ..+||+|-++. -.+++.++-++.|+|||||.+++-+.......+.++++.+-|.+. +.-+-.
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 33333433 57999999854 245789999999999999999999888888999999999999865 222223
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
|-.++-.+.|.+|+
T Consensus 174 ~~~~~~~~~~~~~~ 187 (187)
T PRK00107 174 GLDGERHLVIIRKK 187 (187)
T ss_pred CCCCcEEEEEEecC
Confidence 43345567777774
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.4e-08 Score=98.36 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=81.7
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH-----------------cCCCeEEEEeccccCCCC--
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE-----------------RGVPALIGVMASIRLPYP-- 279 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e-----------------rg~~~~~~~~d~~~Lpfp-- 279 (637)
+.+||+.|||.|.-+.+|+++|..++++ |+++..++.+.+ ++..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~Gv---DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGI---ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEE---ecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3599999999999999999997666666 666666655433 245678888998888642
Q ss_pred -CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 -SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 -d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.||+|+-..+|++++++...++.+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999999999999986788999999999999999998754
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.2e-08 Score=97.39 Aligned_cols=133 Identities=16% Similarity=0.111 Sum_probs=79.8
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc----CCCCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRA 282 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~----Lpfpd~s 282 (637)
.++..++. +|||+|||+|.++..|++. .|.++|+++.++... .+.+.++ .++.+..+|... .+++ .+
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l-~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMREL-LEVAEER-KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHH-HHHhhhc-CCcEEEECCCCCcchhhhcc-cc
Confidence 45666655 9999999999999999886 266666655433322 2234333 355666666543 1223 56
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
||+|++... .+. ....++.++.|+|||||.++++.+ |. .-+|..... ...++..+..+..+++.+.
T Consensus 142 ~D~i~~d~~---~p~-~~~~~L~~~~r~LKpGG~lvI~v~---~~--~~d~~~~~~---~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 142 VDVIYQDVA---QPN-QAEIAIDNAEFFLKDGGYLLLAIK---AR--SIDVTKDPK---EIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred CCEEEECCC---Chh-HHHHHHHHHHHhcCCCcEEEEEEe---cc--cccCcCCHH---HHHHHHHHHHHHcCCeEEE
Confidence 999996432 111 234568999999999999999754 21 112222222 1123333566666776554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-08 Score=103.46 Aligned_cols=103 Identities=9% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchHHHHHhh--c--C--CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEec
Q 006633 218 SIRTAIDTGCGVASWGAYLMS--R--N--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~--~--~--v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
..++|+|||||.|.++..++. . + ++++|+++..+..+...+....+ ..+.|..+|....+-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 346999999998855444332 2 3 45555544333322222211122 24788888877654345789999999
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++++|..++...+++.+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 8889964489999999999999999999985
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=89.78 Aligned_cols=100 Identities=23% Similarity=0.362 Sum_probs=71.8
Q ss_pred CEEEEECCCCchHHHHHhhcC-CEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCC--CCCCCeeEEEecc
Q 006633 220 RTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP--YPSRAFDMAHCSR 290 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lp--fpd~sFDlV~~s~ 290 (637)
.+|||+|||+|.++..+++.+ ..++.+ |+++..++.++.+ + .++.+...|..... +++++||+|+++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gv---di~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGV---DIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEE---ESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEE---EECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 489999999999999998876 544444 5555555555533 2 25788888887765 7889999999988
Q ss_pred ccccCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
-+...... ....+++++.++|||||.+++..|
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 66433210 235789999999999999999764
|
... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-08 Score=102.95 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=69.0
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc------CCCeEEEEecccc-CCCCCC----Cee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIR-LPYPSR----AFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~-Lpfpd~----sFD 284 (637)
+.+|||+|||+|..+..|+++ +..++.+ |+++.+++.+.++ ++++....+|... ++++.. ...
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~i---DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPI---DISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEE---ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 348999999999999999876 3444444 5566665555433 2345566777654 344432 334
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++...+.++..++...+|+++.++|+|||.|++...
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 55555667666654677899999999999999999753
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=97.78 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC------CCeEEEEe
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG------VPALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg------~~~~~~~~ 271 (637)
.-+.+..-++++....+..+||+||||.|....-+++- ++.++.. |.++.+++...++. ..+.+..+
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac---Dfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC---DFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEc---CCChHHHHHHHhccccchhhhcccceec
Confidence 44455666676655544448999999999888877765 2444433 44555555554332 12333333
Q ss_pred cccc--CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 272 ASIR--LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 272 d~~~--Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+... -|.+.+++|+|++.++|.-++++....++.++.++|||||.+++.+...
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3333 3567899999999999988888788899999999999999999986544
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=89.89 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=66.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCC---eEEEEeccccCCCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVP---ALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~---~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
+.+|||+|||+|.++..+++++..++.+ |+++.+++.+++ .+.. +.+...|... ++++++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGV---DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEE---ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 3489999999999999998874433333 444444444432 2222 5666666543 455668999999765
Q ss_pred cccCCc-------------------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQ-------------------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~-------------------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+..+ .....+++++.++|||||.+++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 533110 0135689999999999999998764
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=95.19 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=68.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEeccccC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~~~L 276 (637)
....+.+++...++ .+|||+|||+|.++..|++. .+++++++ +.+++.++++ +. ++.+...+....
T Consensus 66 ~~~~l~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v~~vd~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKPG--DRVLEIGTGSGYQAAVLAHLVRRVFSVERI-----KTLQWEAKRRLKQLGLHNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCCC--CEEEEECCCccHHHHHHHHHhCEEEEEeCC-----HHHHHHHHHHHHHCCCCceEEEECCcccC
Confidence 34455556655544 49999999999999888776 34555554 4444444332 32 467777665432
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+.+.||+|++...+.++ ..++.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998755333 3567899999999999743
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=98.27 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=68.7
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeE
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---LPYPSRAFDM 285 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~---Lpfpd~sFDl 285 (637)
+.++. +|||+|||+|.++..+++. .|+++|+++.. .+.+++.+.++ .++.+...|+.. +..+..+||+
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCE
Confidence 44444 9999999999999999987 27777775422 22455555544 456666666542 2223458999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|++... + ++ +...++.++.++|||||+|++.
T Consensus 206 V~~Dva--~-pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA--Q-PD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC--C-cc-hHHHHHHHHHHhccCCCEEEEE
Confidence 998763 1 22 4556778999999999999996
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=108.16 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=79.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc----chhh-ccccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~----~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
.++|||++||+|+|+-+++..+. -.|+.+|.++..+..+.+. |+- -+++ |..+-+..+.+.||+|=+|-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999988754 2466677777777766542 331 1122 32222222367899987752
Q ss_pred c-cccCC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEec
Q 006633 549 I-FSLYK-------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 549 l-fs~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~ 603 (637)
= |+..+ ..-+.+.++...-|+|+|||.+++......+....+.+..-.+.+.+..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 2 11111 0112457888889999999999997655544445666677778887664
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-08 Score=105.06 Aligned_cols=127 Identities=15% Similarity=0.232 Sum_probs=88.1
Q ss_pred hcchhhHHHHHHHHHHHHHhhhc--cCCC--------------CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCc
Q 006633 449 EMFREDTALWKKRVTYYKSVDYQ--LAQP--------------GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKI 512 (637)
Q Consensus 449 ~~f~~d~~~w~~~v~~y~~~~~~--l~~~--------------~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~ 512 (637)
..|.+.+++=...+..|+.+++. +.+| .....|||+|||+|+++.+|++.. ...|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 45777777777777778876642 3332 245689999999999999887642 23566677777
Q ss_pred chhHHHHhhcc----cchhhcccccc--CCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 513 NTLGVIYERGL----IGTYQNWCEAM--STYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 513 ~~l~~~~eRgl----~~~~~~wce~~--~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+++..+.+|-- +... +..+ .+|| .+||+|++...|-.. ...+...+|-|+-|+|||||++++.|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~---~~D~~~~~~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFE---ANDILKKDFPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEE---ECCcccCCCCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888887632 2221 1222 2465 799999985544322 223568999999999999999999874
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=80.07 Aligned_cols=94 Identities=22% Similarity=0.328 Sum_probs=67.8
Q ss_pred EEEEECCCCchHHHHHhh-cC--CEEEEcCccccHHHHHHHHH---Hc--CCCeEEEEeccccCCC-CCCCeeEEEeccc
Q 006633 221 TAIDTGCGVASWGAYLMS-RN--ILAVSFAPRDTHEAQVQFAL---ER--GVPALIGVMASIRLPY-PSRAFDMAHCSRC 291 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~--v~~vdisp~Dls~a~i~~A~---er--g~~~~~~~~d~~~Lpf-pd~sFDlV~~s~~ 291 (637)
++||+|||.|.++..+++ .. +.++|+ ++.+.+.+. +. .....+...+...... ..+.||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDI-----SPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeC-----CHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999887 33 444544 334443333 11 2345666666655543 5678999999998
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++++.. ....++..+.+.|||||.+++.
T Consensus 76 ~~~~~~-~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVE-DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhh-HHHHHHHHHHHHcCCCCEEEEE
Confidence 866344 7889999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-07 Score=90.51 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=67.6
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIR-LPYPSRA 282 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~-Lpfpd~s 282 (637)
.+...++ .+|||+|||+|.++..++.. .++++|+++..+..++. .+...+ .++.+...+... ++..++.
T Consensus 35 ~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 35 KLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3344443 49999999999999887653 35566664433332221 222233 246666666654 3333468
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||.|++... .. +...++.++.++|||||.+++...
T Consensus 112 ~D~V~~~~~---~~--~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 112 FDRIFIGGG---SE--KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCEEEECCC---cc--cHHHHHHHHHHHcCCCcEEEEEee
Confidence 999998542 22 678899999999999999998643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=91.48 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEecccc-
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR- 275 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~- 275 (637)
......+.+.+....+ .+|||+|||+|.++..+++. .++++|+++..+..++.+.. +.+. ++.+...++..
T Consensus 26 ~~v~~~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHH
Confidence 3333345666655444 49999999999999988754 35566665543333322222 2232 46666666533
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++.....+|.|+... .. +...++.++.++|+|||+|++..+
T Consensus 103 ~~~~~~~~d~v~~~~-----~~-~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-----GR-PIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEEC-----Cc-CHHHHHHHHHHhcCCCeEEEEEee
Confidence 222223457665422 22 567899999999999999999864
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-07 Score=98.38 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L 276 (637)
.+.+++.+.+.++ . ..+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+..+.+...|....
T Consensus 238 TE~LVe~aL~~l~--~--~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLP--E--NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccC--C--CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhcc
Confidence 3445555544432 2 238999999999999988764 355565544333332222 223345677877776443
Q ss_pred CCC-CCCeeEEEeccccccCCcC-----------------------CHHHHHHHHHhcccCCeEEEEEeCCCCccccccC
Q 006633 277 PYP-SRAFDMAHCSRCLIPWGQY-----------------------ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG 332 (637)
Q Consensus 277 pfp-d~sFDlV~~s~~L~h~~~~-----------------------d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~ 332 (637)
.++ .++||+|+|+.-..+-.+. ....++.++.+.|+|||.+++....
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~--------- 383 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF--------- 383 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------
Confidence 332 4579999997743221100 1225677778899999999987531
Q ss_pred CCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 333 WNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 333 w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
. ..+.++++.+..+|..+.
T Consensus 384 --~-------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 384 --D-------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred --c-------HHHHHHHHHHHCCCcEEE
Confidence 1 123466667777775543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.7e-07 Score=92.18 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEec
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMA 272 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d 272 (637)
+.+++.+...+...+ ..+|||+|||+|.++..++.. .++++|+ ++.+++.++++ ..++.+...|
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDi-----s~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERPDAEVTAVDI-----SPEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 445555544433333 348999999999999999876 2445555 44455544433 2356677666
Q ss_pred cccCCCCCCCeeEEEeccccccC------CcC------------------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPW------GQY------------------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~------~~~------------------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
... ++++++||+|+++.-+... .++ ....++.++.++|+|||++++..
T Consensus 167 ~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 167 WFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 533 3346789999996533211 000 13467888889999999999964
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=93.37 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=80.7
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----C--CCe
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----G--VPA 266 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g--~~~ 266 (637)
|..+.|.. .|..+.+... .++|||+|||+|..+..++++ .+.++++ .+.+.++|.+. . ..+
T Consensus 27 ~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEi-----q~~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 27 FRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEI-----QEEAAEMAQRNVALNPLEERI 97 (248)
T ss_pred cccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEe-----CHHHHHHHHHHHHhCcchhce
Confidence 44456655 4666665444 569999999999999999988 3445544 55555555433 1 236
Q ss_pred EEEEeccccCC--CCCCCeeEEEeccccccCCcC----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 267 LIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQY----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 267 ~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~~~----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+...|...+. ....+||+|+|+.-+..-... +.+.+++-..++|||||++.+..+
T Consensus 98 ~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 98 QVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred eEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 77777766654 344579999997654222110 566789999999999999999976
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-08 Score=98.13 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=86.3
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-----~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
...++||.|+|.|+.+..|+-.-...||+. +..+..++.|.+.. ....+.....+....+.+.||+|++.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998876645455552 44556666666432 22455556666665556899999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecc
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
.|++++|...+|+++...|+|+|.+++-..-..... ..+......+-...+.+.+++++.+++.+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999987888999999999999999999753211110 0111222222223445777888888887764
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-08 Score=96.07 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=72.4
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC-CCccceeeeccccccCC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-PRTYDLIHADSIFSLYK 554 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y-p~t~Dl~H~~~lfs~~~ 554 (637)
....+|||+|||.|.++..|.+.+. +++.+|.++.++.. +......+ ....... +++||+|.|..+|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNF--DAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEE--ECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhh--hhhhhhccccchhhHhhHHHHhhcc
Confidence 3477999999999999999988876 66777777566655 22212111 0112333 39999999999998766
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+...+|-+|-|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 5789999999999999999999764
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-08 Score=99.42 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=71.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc---------cchhhccccccCCCC-Cccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---------~~~~~~wce~~~~yp-~t~Dl~H~ 546 (637)
..+|||+|||+|.++..|.++ +. --+|+.+|.+++|+..+.+|.- +...+.-.+.+ +|| .+||+|.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 568999999999999888764 21 0256777888899999987631 11222112333 355 79999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
...+.... +...+|-||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 76665443 56899999999999999999986
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=91.54 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=64.8
Q ss_pred CEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
.+|||+|||+|.++..++++ +..++.+ |+++.+++.|++ .+. .+.+...|... ++++++||+|+++.-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~av---Dis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAV---DISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 48999999999999999976 3333333 444455544443 343 36777777533 345668999999742
Q ss_pred ccc------CCc----C-------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIP------WGQ----Y-------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h------~~~----~-------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
... ... + ....++.++.++|+|||.+++...
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 100 0 124678899999999999999754
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-06 Score=91.05 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=83.0
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc-----cchhhccccccCCCC-Cccceeeec
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-----IGTYQNWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-----~~~~~~wce~~~~yp-~t~Dl~H~~ 547 (637)
..|||+|||+|-.+.+|+++ |- ..|+.+|.+..++..+.+. +. +.++ +...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 58999999999999999775 22 2455567666677666542 11 1222 233444454 689999998
Q ss_pred cccccCC--CCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 548 SIFSLYK--DRCEMEDVLLEMDRILRPEGSVIIRD--DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 548 ~lfs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
--|-..+ ..-....++.+.-|+|+|||.++|-- ..++..+++++.. ++...... .+-+|+-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 7765322 11123578889999999999999963 3446667777544 33333222 4667888887
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-07 Score=97.44 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=76.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-c-----hhhccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-G-----TYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~-----~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
...+|||++||+|=+|..+++.-= .-.|+..|-+.+||.++.+|--= | .++.-.|.++ || ++||++=+..-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 578999999999999999987621 45778888888999999999762 2 2233335666 76 99999877433
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+-.. -+++..|-||-|||+|||.+++-|
T Consensus 129 lrnv---~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNV---TDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcC---CCHHHHHHHHHHhhcCCeEEEEEE
Confidence 3322 378999999999999999998865
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-07 Score=88.41 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=63.5
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+.+|||+|||+|.++..++++ .+.++|+++.. ....+.+...+....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 349999999999998888765 26677775521 1124556666655432 45678999
Q ss_pred EEeccccc---cCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLI---PWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~---h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|++..+.+ +|..+ +...++.++.++|+|||.+++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99865321 12210 136789999999999999999753
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-07 Score=89.36 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=77.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
++.+.+.+...+. ...|-|+|||.+.++..+. .++.+.++ |+.. . +-.+..+|...+|++++++|
T Consensus 60 vd~iI~~l~~~~~-~~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva--------~--n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 60 VDVIIEWLKKRPK-SLVIADFGCGDAKLAKAVP-NKHKVHSF---DLVA--------P--NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHHCTS-T-TS-EEEES-TT-HHHHH---S---EEEE---ESS---------S--STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHHhcCC-CEEEEECCCchHHHHHhcc-cCceEEEe---eccC--------C--CCCEEEecCccCcCCCCcee
Confidence 3445555543332 3489999999999997764 34444455 3221 1 11356688999999999999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccCc
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 364 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~~ 364 (637)
++++...|+. . +...++.|+.|+|||||.|+|..- ..++. ..+...+..+.+|++...+...
T Consensus 125 v~VfcLSLMG--T-n~~~fi~EA~RvLK~~G~L~IAEV----~SRf~-----------~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 125 VAVFCLSLMG--T-NWPDFIREANRVLKPGGILKIAEV----KSRFE-----------NVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp EEEEES---S--S--HHHHHHHHHHHEEEEEEEEEEEE----GGG-S------------HHHHHHHHHCTTEEEEEEE--
T ss_pred EEEEEhhhhC--C-CcHHHHHHHHheeccCcEEEEEEe----cccCc-----------CHHHHHHHHHHCCCeEEecccC
Confidence 9998776632 2 788999999999999999999853 11111 1234556677889988775332
Q ss_pred -----EEEEeccCC
Q 006633 365 -----LAIWQKPTN 373 (637)
Q Consensus 365 -----~aIWqKP~~ 373 (637)
+..++|..+
T Consensus 187 n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 187 NKHFVLFEFKKIRK 200 (219)
T ss_dssp STTEEEEEEEE-SS
T ss_pred CCeEEEEEEEEcCc
Confidence 456677653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=87.76 Aligned_cols=160 Identities=17% Similarity=0.325 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHH---HHHH-HHHcCC-----CeEEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEA---QVQF-ALERGV-----PALIG 269 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a---~i~~-A~erg~-----~~~~~ 269 (637)
.+...+.|.+.++... .+|||||||||..+.+++++ +++ ..|.|.... .++. ..+.+. ++.+-
T Consensus 11 k~pIl~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~l~---WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPHLT---WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALD 84 (204)
T ss_pred HhHHHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCCCE---EcCCCCChHHHhhHHHHHHhcCCcccCCCeEee
Confidence 3445556666654332 26999999999999999987 332 222233322 2221 222221 23222
Q ss_pred EeccccCCC------CCCCeeEEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEeCCCCccccccC--------C-
Q 006633 270 VMASIRLPY------PSRAFDMAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG--------W- 333 (637)
Q Consensus 270 ~~d~~~Lpf------pd~sFDlV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~--------w- 333 (637)
+ .....|. ..++||+|+|..++ |+.+ +..+.+|+.+.++|+|||.|++.+|-..- ..+.. |
T Consensus 85 v-~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 85 V-SAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASL 161 (204)
T ss_pred c-CCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHH
Confidence 1 1111222 35689999999988 5543 25678999999999999999999873321 11110 0
Q ss_pred --CCchhhhHHhHhhHHHHHHHhceeeecc-----cCcEEEEec
Q 006633 334 --NRTTEDLKSEQNGIETIARSLCWKKLIQ-----KKDLAIWQK 370 (637)
Q Consensus 334 --~~t~e~l~~~~~~ie~la~~l~w~~v~~-----~~~~aIWqK 370 (637)
....-.++. .+.++.++.+.+++.... .+.+.||+|
T Consensus 162 r~rdp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 162 RSRDPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred hcCCCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 011111221 345788888888876542 334677776
|
The function of this family is unknown. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=90.42 Aligned_cols=71 Identities=23% Similarity=0.122 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHcC--------CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 250 DTHEAQVQFALERG--------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 250 Dls~a~i~~A~erg--------~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+++.|++.|+++. .++.+.++|...+|+++++||+|+++.+++++. +...+++|+.|+|||||.|++..
T Consensus 4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEE
Confidence 55666666664331 247899999999999999999999999996665 89999999999999999999985
Q ss_pred C
Q 006633 322 P 322 (637)
Q Consensus 322 p 322 (637)
.
T Consensus 82 ~ 82 (160)
T PLN02232 82 F 82 (160)
T ss_pred C
Confidence 4
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=97.46 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=77.1
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCCCCCccceee
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~yp~t~Dl~H 545 (637)
.++..+.. .....|||+|||.|.++.+|.++.- ...|+.+|.++.++..+.++++ .+.+ |- +.+. ...+||+|+
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~-~~~~-~~~~fD~v~ 94 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDV-RDWK-PKPDTDVVV 94 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcCh-hhCC-CCCCceEEE
Confidence 34444544 4568899999999999999987610 1356777888899999999875 2222 21 2221 237899999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.+|-... +.+.+|.++-|+|||||++++..
T Consensus 95 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 988876543 45889999999999999999963
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=92.42 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C----CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~----v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp 277 (637)
.....+.+.+.+.++. +|||||||+|.+++.|+.. + |.+++..+.-...+...++.....++.+..+|...-.
T Consensus 59 ~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 59 SMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 3455677777777766 9999999999999998876 2 4556654432222322222222236788888765433
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-....||.|++..+....+ ..+.+.||+||.+++-.
T Consensus 137 ~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 3456899999988774333 55778899999999964
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-07 Score=99.60 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=74.4
Q ss_pred HHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHH----HhhcccchhhccccccCC
Q 006633 462 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAMST 536 (637)
Q Consensus 462 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgl~~~~~~wce~~~~ 536 (637)
.+.+..++..++- ....+|||+|||.||++-+++++ ++ +|+.+..++++...+ .++||-....--+..+..
T Consensus 48 ~~k~~~~~~~~~l-~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 48 ERKLDLLCEKLGL-KPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHhCC-CCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 3334444443333 34779999999999999999988 65 344444555666654 578885544444455666
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++.+||-|=+.++|..... -+.+.++-+++|+|+|||.+++.
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 7779999999899887643 46789999999999999999985
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-06 Score=90.04 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=64.7
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cCCC--eEEEEeccccCCCCCCCeeEEEec
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVP--ALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.+|||+|||+|.++..++.. .++++|+ +..+++.|++ .+.. +.+..+|... +++++.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDi-----s~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDI-----SPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEEC
Confidence 48999999999999999875 3455555 4445444443 2332 6777776543 3455589999996
Q ss_pred cccccC------------CcC-----------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPW------------GQY-----------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~------------~~~-----------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-...- .+. ....++.++.++|+|||++++...
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 322111 000 234678899999999999999754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=89.97 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=94.6
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhc--ccC-CCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC
Q 006633 190 FPGGGTMFPRGADAYIDDIGKLIN--LKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 190 Fpg~g~~f~~g~~~~i~~L~~lL~--~~~-g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
+.|.|.||--..+.+.+.+. .-. ..+ ....++||||+|.|..+..|+.. .+.++++ +..|...-.++|.
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~-~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~-----S~~Mr~rL~~kg~ 137 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLR-ISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEA-----SPPMRWRLSKKGF 137 (265)
T ss_pred hhcCCcEEEecHHHHHHHhh-hhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecC-----CHHHHHHHHhCCC
Confidence 55667776555444433222 211 111 13468999999999999999886 5666655 5566666667774
Q ss_pred CeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe--CCCCcccccc-CCCCchhhhH
Q 006633 265 PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG--PPVNWESHWK-GWNRTTEDLK 341 (637)
Q Consensus 265 ~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~--pp~~w~~~~~-~w~~t~e~l~ 341 (637)
.+ .+.....-.+..||+|.|.++|..-. ++..+|+++.+.|+|+|.+++.. |-..+.+... .|.+..+.+.
T Consensus 138 ~v----l~~~~w~~~~~~fDvIscLNvLDRc~--~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~ 211 (265)
T PF05219_consen 138 TV----LDIDDWQQTDFKFDVISCLNVLDRCD--RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLP 211 (265)
T ss_pred eE----EehhhhhccCCceEEEeehhhhhccC--CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcC
Confidence 32 23333333456899999999995555 79999999999999999999973 3222322222 2444444443
Q ss_pred HhHhhHHHHHHHh
Q 006633 342 SEQNGIETIARSL 354 (637)
Q Consensus 342 ~~~~~ie~la~~l 354 (637)
-.-...|+.+..+
T Consensus 212 ~~g~~~E~~v~~l 224 (265)
T PF05219_consen 212 VKGATFEEQVSSL 224 (265)
T ss_pred CCCCcHHHHHHHH
Confidence 3333344444444
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=84.93 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred EEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHH----HHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc-
Q 006633 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF----ALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI- 293 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~----A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~- 293 (637)
+|||+|||.|.+...|++.+... .+...|.++.++.. |..++.+ +.|.++|+..-.+..+.||+|+--..+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999985322 02222445455444 4445554 8899999887788889999999644331
Q ss_pred -cCCcC----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 -PWGQY----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 -h~~~~----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.++ .+..++..+.++|+|||.|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 12211 335688999999999999999864
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-07 Score=90.59 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=74.2
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.++|||||+|.|.++..++++ ++.++-+ |+. ..++.+.+ ...+.+..+|.. -++|. +|+++..++||+|.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dlp-~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVF---DLP-EVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEE---E-H-HHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceee---ccH-hhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 458999999999999999887 5544444 432 34455555 556888888877 66776 99999999999999
Q ss_pred cCCHHHHHHHHHhcccCC--eEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPG--GYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPG--G~Lvls~p 322 (637)
+++...+|+++.+.|+|| |.+++..+
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 877889999999999999 99999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=86.64 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=69.4
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd 280 (637)
+.+.+.+....+. +|||+|||+|.++..+++++ ++++++ ++.+++.++++. .++.+...|+..+++++
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~vE~-----~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAARVTAIEI-----DPRLAPRLREKFAAADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEEEEC-----CHHHHHHHHHHhccCCCEEEEECchhcCCccc
Confidence 3455555544443 89999999999999999884 455555 445555554442 35778888998888888
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhc--ccCCeEEEEE
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRV--LRPGGYWILS 320 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~Rv--LKPGG~Lvls 320 (637)
..||.|+++.-+ |.. ...+..+.+. +.++|.|++.
T Consensus 76 ~~~d~vi~n~Py-~~~----~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 76 LQPYKVVGNLPY-NIS----TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCCEEEECCCc-ccH----HHHHHHHHhcCCCcceEEEEEE
Confidence 789999998644 332 2333433332 4588888776
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-07 Score=94.43 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
...++|||||.|.....|...+| +.+ |.+..|++.++.. ++.....+.|-+.|+|.+++||+|+++..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~-----DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMM-----DTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeee-----ecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 34799999999999999998864 344 4566677666543 455677788999999999999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||.. +....+..+...|||.|.|+-+.
T Consensus 148 -HW~N-dLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 148 -HWTN-DLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred -hhhc-cCchHHHHHHHhcCCCccchhHH
Confidence 9998 89999999999999999998874
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.5e-06 Score=86.32 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEecc
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMAS 273 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~ 273 (637)
..+.+++.+...+... ....+|||+|||+|.++..+++. .++++|+ ++.+++.|+++- ....+...|.
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi-----s~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADI-----DPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCEEEEeec
Confidence 3455555555544321 12348999999999999998865 3455555 444444444321 1135666665
Q ss_pred cc-CCC-CCCCeeEEEeccccccCC------cC--------------C----HHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IR-LPY-PSRAFDMAHCSRCLIPWG------QY--------------A----DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~-Lpf-pd~sFDlV~~s~~L~h~~------~~--------------d----~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ++- ..+.||+|+++.-..+.. ++ + ...++..+.++|+|||.+++...
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43 221 135799999986432210 00 1 23677788899999999999854
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-07 Score=84.44 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=71.1
Q ss_pred ceeEeeecccchhhhhhhcC--CCeEEEEeccCCCCcchhHHHHhhc----c---cchhh-ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVD--DPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~eRg----l---~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
-.+|||+|||+|.++.+|++ .+. .|+.+|.++.+++.+.++- + |..++ |+ +.....+..||+|.+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 35789999999999999998 444 4566677778888887775 2 33333 33 2224455679999998
Q ss_pred cccc--cCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFS--LYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+ |+ .+-+......+|-++.+.|||||+++|++
T Consensus 78 ~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 G-FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 43 22222455788999999999999999975
|
... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.7e-07 Score=95.18 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=68.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C----CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~----v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
....+.+.+...++. +|||||||+|.++..+++. + ++++++++..+..++.. +.+.+. ++.+..+|....+
T Consensus 68 l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~-l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCChhhcc
Confidence 334455555555544 9999999999999999875 1 55565544333222221 122333 4677777766655
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.....||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~--------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE--------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH--------hHHHHHHhcCCCCEEEEEe
Confidence 55578999999765432 2345778999999998864
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=87.20 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=74.9
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEeccccCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP 279 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~~~Lpfp 279 (637)
...+.+++...++. +|||||||+|..++.|++..-.++++ +..+...+.|+++ +. ++.+.++|...---+
T Consensus 61 vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~si---Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 61 VARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSI---ERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEE---EEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 44567777777766 99999999999999999984344455 4455555555443 33 577777775443334
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
...||.|+.+.+....+ +.+.+.|||||.+++-.
T Consensus 136 ~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEE
Confidence 57899999988775555 56778899999999964
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-07 Score=95.68 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc------cchhhc
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQN 529 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------~~~~~~ 529 (637)
+.|++.+.... . + .....|||++||+|-++..|++.-----.|+.+|-+++||.++.+|-- |-....
T Consensus 33 ~~wr~~~~~~~---~-~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLL---G-L---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHH---T------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhcc---C-C---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 67888665322 1 2 335699999999999998887641112366777888899999998733 222222
Q ss_pred cccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 530 WCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 530 wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
=.|.++ || .+||.|=+...+- +-.+.+..|-||-|||||||.++|-|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 224443 65 9999887644333 33567999999999999999999965
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-07 Score=98.39 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=67.4
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccc---hhh-ccccccCCCC-Cccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG---TYQ-NWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~---~~~-~wce~~~~yp-~t~Dl~H~~ 547 (637)
...+|||+|||.|+++.+|+++- ..+|+.+|.++.++..+.+ +|+.. ... |.. . .+|| .+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~-~~~~~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-N-QPFEDGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-c-CCCCCCCccEEEEC
Confidence 45689999999999999998751 2355555666667665544 35522 211 222 1 2354 899999986
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..+.... +...+|.||-|+|||||.++|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6554433 45899999999999999999964
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.6e-07 Score=92.89 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCC-Cccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
....+|||+|||+|.++..|.+.+. .|+.+|.++.++..+.++.- +.... |. +.++ +| .+||+|-++..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~-~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLP-LATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCc-CCCCcEEEEEECchhhh
Confidence 3467899999999999999987653 56677887789998888753 11111 21 3333 44 79999988655432
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
--+...+|-|+-|+|||||.++++.
T Consensus 116 ---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 ---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2356899999999999999999984
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.7e-07 Score=95.99 Aligned_cols=105 Identities=22% Similarity=0.312 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHH-H-----cC----CCeEEEEeccccC----CCC-
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFAL-E-----RG----VPALIGVMASIRL----PYP- 279 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~-e-----rg----~~~~~~~~d~~~L----pfp- 279 (637)
...+|||+|||-|.-..-....+ +.++|++...+.++..+... . +. ..+.+...|.... .++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 45699999999887655555553 45566655444443333311 0 01 2456666664321 133
Q ss_pred -CCCeeEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 -SRAFDMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 -d~sFDlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...||+|-|.+++|+.... ....+|.++.+.|||||+|+.+.|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3599999999999766542 344689999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-06 Score=90.37 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=64.6
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCCCCCCCeeEEEec
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.+|||+|||+|.++..++.. .++++|+ ++.+++.|++ .+. .+.+...|... ++++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDi-----s~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDI-----SPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeC-----CHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 48999999999999999876 3455555 4444444433 233 36777777533 2345689999997
Q ss_pred cccc-------------cCCc----------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLI-------------PWGQ----------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~-------------h~~~----------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-.. |.+. +....++.++.++|+|||.+++...
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4221 1110 0124678999999999999999743
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=88.10 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=86.2
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAH 287 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~ 287 (637)
|.+.|...++ ...|-|+|||.+.++..- ...|..+|+.+ ++-.+..+|....|.+|++.|+++
T Consensus 171 ii~~ik~r~~-~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 171 IIRKIKRRPK-NIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred HHHHHHhCcC-ceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEE
Confidence 4444443333 347899999999876511 12566555522 223456778889999999999999
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccCc---
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD--- 364 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~~--- 364 (637)
+...| ... +...++.|+.|+|||||.|++..-. .++. ....+.+....++|........
T Consensus 234 ~CLSL--Mgt-n~~df~kEa~RiLk~gG~l~IAEv~----SRf~-----------dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 234 FCLSL--MGT-NLADFIKEANRILKPGGLLYIAEVK----SRFS-----------DVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred eeHhh--hcc-cHHHHHHHHHHHhccCceEEEEehh----hhcc-----------cHHHHHHHHHHcCCeeeehhhhcce
Confidence 76555 233 7889999999999999999998531 1121 1222556677889977654433
Q ss_pred --EEEEeccC
Q 006633 365 --LAIWQKPT 372 (637)
Q Consensus 365 --~aIWqKP~ 372 (637)
+..++|+.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 45677764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-05 Score=83.21 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=81.4
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCCCCCccceeeeccccccC-
Q 006633 480 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY- 553 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~- 553 (637)
.|||+|||+|.++.+|.++ +- ..|+.+|.+...+..+.+ .|+-+.+ .+...++..+..||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~-~~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEV-FASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEE-EEcccccccCCCccEEEECCCccCCc
Confidence 5999999999999999875 32 235556666566665543 3442222 2333444456899999998766321
Q ss_pred -CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 554 -KDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 554 -~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
.+.-..+.++.++-|.|+|||.++|--+. .+-..+++..... ++.. +. .+-||+-++|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEcc
Confidence 11234578999999999999999886432 2334555554432 2222 11 35788887763
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-06 Score=85.82 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH-HcCC----------------CeEEEEeccccCCCCC-
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERGV----------------PALIGVMASIRLPYPS- 280 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~-erg~----------------~~~~~~~d~~~Lpfpd- 280 (637)
..+||..|||.|.-+.+|+++|..++++ |+++..++.+. +++. .+.+.++|...++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 3489999999999999999998877777 78888887763 3322 2456677877765433
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+.||+|+=..+|+-++++...++.+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5799999888888888778889999999999999995444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=89.54 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=72.1
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||+|||+|.++..++.+ +..++.+ |+++.+++.++++...+.+...|...+. .+++||+|+++..+.|..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gV---Disp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccC
Confidence 348999999999998888765 3344444 5566777778776556778888877665 346899999998886654
Q ss_pred cCC------------------HHHHHHHHHhcccCCeEEEEE
Q 006633 297 QYA------------------DGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 297 ~~d------------------~~~~L~ei~RvLKPGG~Lvls 320 (637)
..+ ...++..+.++|+|+|.+.+.
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 321 245778888999999987776
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=86.24 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=91.9
Q ss_pred ccCcchhcchh--hHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh
Q 006633 443 VDGVTAEMFRE--DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE 520 (637)
Q Consensus 443 ~~g~~~~~f~~--d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e 520 (637)
.+|+..+.|.. +...|++.|+.- .+..+.. .....|||+|||.|.++.+++..---.-.|+.+|.++.++..+.+
T Consensus 7 ~~~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~ 83 (198)
T PRK00377 7 IPGIPDEEFERDEEIPMTKEEIRAL--ALSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR 83 (198)
T ss_pred CCCCChHHHccCCCCCCCHHHHHHH--HHHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 35666667775 334777776522 1222333 346689999999999988764320001245556666667776544
Q ss_pred h----ccc---chhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHH
Q 006633 521 R----GLI---GTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSI 591 (637)
Q Consensus 521 R----gl~---~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~ 591 (637)
+ |+. -++. |..+.+...+..||+|.+.+ ....++.+|-++.|+|+|||.+++. -..+.+.++.+.
T Consensus 84 n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 84 NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 3 431 1221 22222223346799877632 2245788999999999999999983 355677788887
Q ss_pred HhcCCceeEE
Q 006633 592 TDGMEWEGRI 601 (637)
Q Consensus 592 ~~~~~W~~~~ 601 (637)
++.+.++..+
T Consensus 158 l~~~g~~~~~ 167 (198)
T PRK00377 158 LENIGFNLEI 167 (198)
T ss_pred HHHcCCCeEE
Confidence 7777766553
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5e-07 Score=94.13 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=68.8
Q ss_pred CceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCC-Cccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.+++.|.+. + .-..+|+.+|.++.++..+.++.- +.... |. +. .+++ .+||+|.+ +|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~-lp~~~~sfD~I~~--~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HR-LPFADQSLDAIIR--IYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-cc-CCCcCCceeEEEE--ecC
Confidence 3467999999999999988653 1 111367888888899999887742 11111 11 22 2454 79999986 232
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHH
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSI 591 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~ 591 (637)
+..+-|+.|+|+|||++|+.... ..+..++.+
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 33467999999999999997543 233444443
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=83.71 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=77.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhcccc-ccCCCCCccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCE-AMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce-~~~~yp~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.++.++++.. --.+|..+|.++.++..+.++ |+ .-+.-.+. ....++..||+|.+++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEECCCc-
Confidence 35689999999999998886541 013455566665666666442 33 11111111 223456789999886532
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCcee
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEG 599 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~ 599 (637)
..++.++.++-|+|+|||++++.+ ..+...++.++++...++.
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 357889999999999999999976 4566677778888777753
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.4e-07 Score=89.43 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=67.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhccccc-cCCCCCccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEA-MSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~-~~~yp~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|.++.+|++++ ..|..+|.++.++..+.+ .|+ .+...-++. -..++.+||+|.+..+|..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence 3589999999999999999875 367778888778876543 344 111111111 1124578999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.. .-+++.++-++.|+|+|||++++
T Consensus 107 ~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 23668999999999999999555
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=93.15 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=71.3
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCC--C
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLP--Y 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lp--f 278 (637)
.+...+...++ .+|||+|||+|..+..++++. ..++.+ |.++.+++.++ ..+..+.+...|...++ +
T Consensus 235 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~---D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 235 LAATLLAPQNG--ERVLDACAAPGGKTAHILELAPQAQVVAL---DIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 34445554444 499999999999999998762 233333 44444444433 33555677777776654 3
Q ss_pred CCCCeeEEEecc----c--cc-----cCCc--C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSR----C--LI-----PWGQ--Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~----~--L~-----h~~~--~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.++||.|++.. . +. .|.. + ....++.++.++|||||.+++++.
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 467899999532 1 10 1211 0 124689999999999999999864
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=87.24 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=66.2
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|.++..|.+. +- .+|+.+|.+++++..+.++ ++ +.+++.=.+.+ ++| .+||+|++..
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEec
Confidence 568999999999999988764 11 2455566666777666554 22 12222111222 345 7999999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+.... +...+|-|+-|+|||||.+++.+.
T Consensus 123 ~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 654333 457899999999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.7e-07 Score=90.80 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=104.5
Q ss_pred hhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccC--CCCCccceee
Q 006633 469 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMS--TYPRTYDLIH 545 (637)
Q Consensus 469 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~--~yp~t~Dl~H 545 (637)
+..... +..|.+||+|||+|-+|-+|.+. +--+..+|.++|||..+.|+|++-++. -=...|+ .=++-||||-
T Consensus 118 I~~~~~-g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 118 IGKADL-GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred HHhccC-CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchh
Confidence 344555 66999999999999999999765 223456688999999999999976443 2123466 3478999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCceeEEe-----cc
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIA-----DH 604 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~-----~~ 604 (637)
+.-||+... .++.+|.-.++.|.|||.|+|+... .-...|....++-.-+++.+ -.
T Consensus 194 AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~ 270 (287)
T COG4976 194 AADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRR 270 (287)
T ss_pred hhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchh
Confidence 988888654 5699999999999999999998210 02245666666666666522 22
Q ss_pred CCCCCCcceEEEEEec
Q 006633 605 ENGPRQREKILFANKK 620 (637)
Q Consensus 605 e~~~~~~~~~l~~~K~ 620 (637)
+.|.-.+..+.|++|+
T Consensus 271 d~g~pv~G~L~iark~ 286 (287)
T COG4976 271 DAGEPVPGILVIARKK 286 (287)
T ss_pred hcCCCCCCceEEEecC
Confidence 3343356778888875
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.9e-07 Score=95.16 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=64.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHH--HHhhcc-----cchhhccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV--IYERGL-----IGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~--~~eRgl-----~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
.+.|||+|||.|.++.+|++.+- -.|+.+|.+..++.. +..+.+ +-+...=.+.++. +.+||+|+|.+++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 47999999999999999987642 125556665444432 111211 1111100123333 7899999998876
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. ++-+...+|.++-|+|||||.+|+.
T Consensus 200 ~---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 Y---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred h---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4 3456789999999999999999986
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.2e-07 Score=88.68 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=67.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH----hhccc--c-hhhccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLI--G-TYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgl~--~-~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++.+|++++. +|..+|.++.++..+. ++|+- - ...|+.+ + +++.+||+|-+..+|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecch
Confidence 35899999999999999998753 6667777767776644 34441 1 1123221 1 246789999998776
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
-.. +.-+++.++-+|.|+|||||++++
T Consensus 106 ~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 334578999999999999999655
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-07 Score=93.21 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=79.4
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH----hhcccchhhccccccCC--CCCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMST--YPRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgl~~~~~~wce~~~~--yp~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||.|.++.+|++++. .|..+|.++.++..+. +.|+ . ++--+..+.. .+..||+|-+..+|..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhh
Confidence 3899999999999999988763 5677788777776653 3455 1 1111122222 2689999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe---CH--------H---HHHHHHHHHhcCCceeEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD---DV--------D---ILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~--------~---~~~~~~~~~~~~~W~~~~~ 602 (637)
. ++-+++.++-+|.|+|+|||++++-. .. . .-..++++.+. |++..+
T Consensus 197 l-~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 L-NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 3 33467899999999999999966531 11 1 23556677766 888755
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=94.44 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=72.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC---
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--- 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp--- 277 (637)
.+...+...++ .+|||+|||+|..+..+++. .++++|+++..+...+.+ +...|. ++.+...|...++
T Consensus 243 l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 243 LVAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhccccc
Confidence 34445544444 49999999999999888875 245555544333222222 223344 4677777877665
Q ss_pred -CCCCCeeEEEec------cccccCCc-------C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 -YPSRAFDMAHCS------RCLIPWGQ-------Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 -fpd~sFDlV~~s------~~L~h~~~-------~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+..++||.|++. .++.+-++ + ....+|.++.++|||||+++.++.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 446789999962 22222111 0 145789999999999999999864
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=79.30 Aligned_cols=106 Identities=11% Similarity=-0.026 Sum_probs=68.6
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH-HcC-CCeEEEEeccccCCCCCCCe
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL-ERG-VPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~-erg-~~~~~~~~d~~~Lpfpd~sF 283 (637)
....|.+.+++ +++|||||+|+.+..++.. ...++.++...-....++... +-+ .++.+..+++...--...+|
T Consensus 26 ~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 34444455555 9999999999999999833 344444422211222222222 223 35677766654331122279
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|.|+..... ..+.+|+.+...|||||.+++..
T Consensus 104 daiFIGGg~------~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 104 DAIFIGGGG------NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CEEEECCCC------CHHHHHHHHHHHcCcCCeEEEEe
Confidence 999998764 67789999999999999999975
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=85.66 Aligned_cols=131 Identities=14% Similarity=0.199 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHH----hhcc--cchhh
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 528 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl--~~~~~ 528 (637)
+.|++.+-.-..++..+. ..+|||+|||+|.++..|+.. +- ..|+.+|.++.++.++. +.|+ +.+++
T Consensus 25 ~~~~~~~~d~i~~~~~~~----~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD----GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHHHhcC----CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe
Confidence 467766643222333332 468999999999888876532 11 34566677766665543 3354 33333
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC-ceeE
Q 006633 529 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME-WEGR 600 (637)
Q Consensus 529 ~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~-W~~~ 600 (637)
.=.+.+ ....+||+|-+++ + ..+++++-++.|+|||||.+++.........+..+.+.++ |...
T Consensus 99 ~d~~~~-~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 99 GRAEDF-QHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred cchhhc-cccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 111222 2347999998855 1 3578889999999999999999877766667766665533 4444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=86.66 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHc----------CCCeEEEEecccc-CCCCCCC
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIR-LPYPSRA 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~er----------g~~~~~~~~d~~~-Lpfpd~s 282 (637)
..++|||||||.|..+..++++ + ++++++++ .+++.|++. ...+.+...|+.. +...+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-----~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-----RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-----HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 3569999999999999999886 3 45665544 444444432 2346677777644 2334678
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|++...- ++... ....+++.+.+.|+|||.+++..
T Consensus 151 yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 151 FDVIIVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ccEEEECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999985432 43321 13567899999999999999863
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.9e-07 Score=97.36 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.7
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccch-hhccccccCCCCCccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGT-YQNWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~-~~~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
....|||+|||.|+++..|++. ++ .|+.+|.++.++..+.+|.- +. +.-.+..+...+.+||+|.+.++|....
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 3568999999999999999865 43 56777777789988887641 10 1111122233367899999988876432
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-+.+.+|-++.|+|+|||++++.+
T Consensus 243 -~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 243 -PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2356789999999999999999963
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-06 Score=85.77 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=65.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
..+|||+|||+|.++..++++ ...++.+ |+++.+++.|+++...+.+...|....++ +++||+|+++.-+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aV---EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCV---ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEE---ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 348999999999999988763 2233333 55667777777665567788888766554 56899999987664
Q ss_pred cCCcCC----------HHHHHHHHHhcccCCeE
Q 006633 294 PWGQYA----------DGLYLIEVDRVLRPGGY 316 (637)
Q Consensus 294 h~~~~d----------~~~~L~ei~RvLKPGG~ 316 (637)
.....+ ...++..+.+++++|+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 322111 34578888897777775
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=84.22 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=67.4
Q ss_pred EEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEeccccc
Q 006633 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP--YPSRAFDMAHCSRCLI 293 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-Lp--fpd~sFDlV~~s~~L~ 293 (637)
.+||||||.|.+...++.. ++.++++...-+..+..+.......++.+..+|+.. +. ++++++|.|+..+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD- 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD- 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence 8999999999999999887 456666644433333333333334578888888765 32 567999999986644
Q ss_pred cCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 294 PWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 294 h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.. -...++.++.++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 66642 23469999999999999999975
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=92.61 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH-Hhhcccc---hhhccc
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIG---TYQNWC 531 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgl~~---~~~~wc 531 (637)
..|+..+. |..++..++. -..++|||+|||.|.++.+|+..+. -.|+.+|.+..++..+ ..|.+++ -.+--.
T Consensus 102 ~e~~s~~~-~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred HHHHHHHH-HHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 35665544 3344444444 4457999999999999988887753 2456666665555432 1111111 111111
Q ss_pred cccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 532 EAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 532 e~~~~y--p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
..+... +.+||+|-|.+++-. +-+...+|.|+-|+|||||.+|+.
T Consensus 178 ~~ie~lp~~~~FD~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLHELYAFDTVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCCCCCCcCEEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 112222 358999999887743 346789999999999999999986
|
Known examples to date are restricted to the proteobacteria. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.30 E-value=6e-07 Score=90.23 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=68.0
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----ccc---chhh-ccccccCCCCCccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
+.|||+|||.|+++..+++. +- .+|..++.+++++..+.++ |+- ..+. |..+ .++|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~--~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK--DPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc--CCCCCCCCEeehHHH
Confidence 36999999999999988764 11 2445555566777766654 442 2222 2211 135689999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
|.... +.+.+|-++.|+|+|||++++.+.
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76554 468999999999999999999864
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-07 Score=93.29 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccc---hhhccccccCCC-CCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMSTY-PRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~---~~~~wce~~~~y-p~t~Dl~H~~~l 549 (637)
-.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+.. +++.-.+.+..+ +++||+|.+.++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 46999999999999999998853 667778887888887765 4422 222111223334 489999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|.... +...+|-++-|+|||||.+++..
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 87543 44789999999999999998863
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.1e-06 Score=91.59 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEE--EEeccccCCC-
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALI--GVMASIRLPY- 278 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~--~~~d~~~Lpf- 278 (637)
..+...+...++ .+|||+|||+|..+..+++. .++++|+++..+..... .+...+....+ ..++....++
T Consensus 228 ~~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAPQNE--ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEecccccccccc
Confidence 345555655554 49999999999999888875 35555554433332222 22233554333 4445444443
Q ss_pred -CCCCeeEEEe----c--cccccCCc-------C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 -PSRAFDMAHC----S--RCLIPWGQ-------Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 -pd~sFDlV~~----s--~~L~h~~~-------~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.++||.|++ + .++.+.++ + ....+|.++.++|||||.|++++.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5678999995 2 22322221 0 135799999999999999999965
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.8e-06 Score=85.07 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc------CCCeEEEEeccccC-CCCCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRL-PYPSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~L-pfpd~sFDlV~ 287 (637)
.++|||||||+|.++..+++. .++++++ +++.++.|++. ...+.+...|.... .-..++||+|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEi-----dp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEI-----NPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEEC-----CHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 458999999999999988875 3556655 44555555543 13466777775432 22236799999
Q ss_pred eccccc--cCCcC-CHHHHHHHHHhcccCCeEEEEE
Q 006633 288 CSRCLI--PWGQY-ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 288 ~s~~L~--h~~~~-d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+.. +. ..+.. ....+++++.++|+|||.+++.
T Consensus 142 ~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 142 VDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 752 21 11110 2368999999999999999995
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=93.48 Aligned_cols=97 Identities=12% Similarity=0.198 Sum_probs=72.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccc---cccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWC---EAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wc---e~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++..|+..+. +|..+|.++.++.++.++. +..-+.-.| +.+...+++||+|=|.+++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999987643 6778888888999888662 211111122 3333234799999997777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +.+.+|-|+-|+|||||.++|.+
T Consensus 209 eHv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6544 56899999999999999999985
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-06 Score=94.57 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=68.7
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCe
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sF 283 (637)
.++...+ +.+|||+|||+|..+..+++. .++++|+++..+..... .+.+.+. ++.+...|...++ ++++|
T Consensus 244 ~~l~~~~--g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~f 319 (445)
T PRK14904 244 LLLNPQP--GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQP 319 (445)
T ss_pred HhcCCCC--CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCC
Confidence 3444334 348999999999988887763 35556554443332222 2223344 3677777776665 56789
Q ss_pred eEEEe----cc--ccc-----cCCc--C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHC----SR--CLI-----PWGQ--Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~----s~--~L~-----h~~~--~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|++ +. .+. .|.. + ....+|.++.++|||||.+++++.
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99995 21 110 1111 0 123689999999999999999874
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.1e-06 Score=88.32 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCC--CCCccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMST--YPRTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~--yp~t~Dl~H~~~lfs~ 552 (637)
....+|||+|||.|.++..|++.. =.-+|+.+|.++.++..+.++-- +.++. ..+.. .+.+||+|+++..|..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEEEEccChhh
Confidence 446899999999999999987641 01356677777788888876621 11221 11112 2379999999887764
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHHHHHHhcCCceeE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD--V--DILVKIKSITDGMEWEGR 600 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~~~~~~~~~W~~~ 600 (637)
.. +...+|-++-|+|||||.+++.-. . .....+++++....|...
T Consensus 106 ~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 106 LP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 43 458899999999999999999631 1 122335556656666544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-06 Score=89.39 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=79.1
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccccccCCC-CCccceeeeccccccC
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTY-PRTYDLIHADSIFSLY 553 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wce~~~~y-p~t~Dl~H~~~lfs~~ 553 (637)
.+|||+|||+|.++.++++.+. -.|+.+|.++.++..+.++. +-..+...+.....+ +..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6899999999999888877653 35677787777887776653 211122222223333 47899999965432
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEe
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 602 (637)
.+..++-++-|+|||||+++++.- .+....+.+.+++. |+....
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 345788999999999999999864 34556677766665 766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-06 Score=81.08 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=83.1
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCCCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||+|.++..|.+..- .|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4699999999999999988753 566677776777766553 22 12222 3322 23579999988755421
Q ss_pred CC------------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCceeEEecc
Q 006633 553 YK------------------DRCEMEDVLLEMDRILRPEGSVIIRDDVDI-LVKIKSITDGMEWEGRIADH 604 (637)
Q Consensus 553 ~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~~ 604 (637)
.. .+..++.+|-++.|+|+|||.+++.+.... ...+.+.++...++.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 11 122367889999999999999999865544 66777777888888876543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=88.88 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=70.0
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHH--Hc----CCCeEEEEecc------ccCCCCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL--ER----GVPALIGVMAS------IRLPYPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~--er----g~~~~~~~~d~------~~Lpfpd~sF 283 (637)
+..+||+|||-|.-+....+. .++++||+...+.+++.+.-. .+ ..++.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 347999999999876666555 356666654444333322111 11 12466777663 2345667779
Q ss_pred eEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|-|-+|+|.-... ....+|.++.+.|||||+|+-+.|
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 999999999543321 456789999999999999999987
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=88.83 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=67.8
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPS 280 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd 280 (637)
.+...++ .+|||+|||+|..+..+++. .++++|+ ++.+++.++ ..+. ++.+...|...++...
T Consensus 66 ~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~-----~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 66 ALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAIVANEF-----SKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEEEEEcC-----CHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc
Confidence 4444444 48999999999999888764 2455555 444443333 2243 4667777776666555
Q ss_pred CCeeEEEecc------cccc-------CCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSR------CLIP-------WGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~------~L~h-------~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.||.|++.. ++.+ +.++ ....+|.++.++|||||+++.++.
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 6799999621 1111 1111 123589999999999999999865
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.1e-06 Score=91.53 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEecccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIR 275 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~ 275 (637)
.+..++.+.+++...++ .+|||+|||+|.++..|++....++.+ |+++.+++.|++ .+. ++.+..+|...
T Consensus 282 ~e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~~~V~gv---D~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQAAEVVGV---EGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 34556666666654443 489999999999999999875444444 445555554443 233 57788877643
Q ss_pred ----CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 276 ----LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 276 ----Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+++.+++||+|++.. +.. .....+..+.+ ++|++.++++..|.
T Consensus 357 ~l~~~~~~~~~fD~Vi~dP---Pr~--g~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDP---PRA--GAAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhhhcCCCCEEEECc---CCc--ChHHHHHHHHh-cCCCeEEEEEeChH
Confidence 345567899999875 333 23445655555 69999999997543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-06 Score=84.94 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=70.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh--cccchhhccccccC--CCC-Cccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGTYQNWCEAMS--TYP-RTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gl~~~~~~wce~~~--~yp-~t~Dl~H~~~lf 550 (637)
....+|||+|||.|.++..+++.--=.-+++.+|.++.++..+.++ +.....+-.+..+. .++ .+||+||+..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3467899999999999998876410012566667777788888877 22111111111111 244 799999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +.+.+|-++-|+|+|||++++.+
T Consensus 98 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 6554 46889999999999999999864
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-06 Score=91.28 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=70.4
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC-CCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPS 280 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp-fpd 280 (637)
+..++...++ .+|||+|||+|..+..+++. .++++|+++..+..... .+.+.+. .+.+...|...++ +.+
T Consensus 229 ~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 229 VPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhh
Confidence 4444444444 49999999999998888764 25555554433332222 2223344 3677777877765 456
Q ss_pred CCeeEEEec-cc--c--ccCCc--------C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCS-RC--L--IPWGQ--------Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s-~~--L--~h~~~--------~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||.|++. .| + ..-.+ + ....+|.++.+.|||||.+++++.
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 789999962 11 1 11111 0 224679999999999999999875
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=86.42 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS 535 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~ 535 (637)
..|++.+-.... ..+.. ..+|||+|||+|-++.+|.+.. --+|+.+|.++++|..+.+++ ..++.-.+.+
T Consensus 35 ~~wr~~~~~~l~--~~~~~---~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l- 104 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR---PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEAL- 104 (226)
T ss_pred HHHHHHHHHHHH--HhcCC---CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhC-
Confidence 568776543221 11122 4689999999999999998772 237888899999999998874 2233333444
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCc
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEG 574 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG 574 (637)
+|| ++||+|-+...+ ++--+++..|-||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l---~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFAL---HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChh---hccCCHHHHHHHHHHHhcCce
Confidence 455 899999985544 234577999999999999954
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.2e-06 Score=81.08 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCc----hHHHHHhhc-------CCEEEEcCccccHHHHHHHHHHc--------C---------------
Q 006633 218 SIRTAIDTGCGVA----SWGAYLMSR-------NILAVSFAPRDTHEAQVQFALER--------G--------------- 263 (637)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~-------~v~~vdisp~Dls~a~i~~A~er--------g--------------- 263 (637)
..-+|+..||++| +++..|.+. .+.+++. |++...++.|++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~at---Di~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILAT---DISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDG 107 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEE---ES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEE---ECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence 4568999999999 566666661 1333333 6666777666531 1
Q ss_pred ----------CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 ----------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ----------~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.|...+....+.+.+.||+|+|..+++++.++....+++.+.+.|+|||+|++..
T Consensus 108 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 108 GGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp CCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1256666666663445678999999999999997677899999999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=81.77 Aligned_cols=99 Identities=16% Similarity=0.268 Sum_probs=75.4
Q ss_pred EEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEecccc
Q 006633 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRCL 292 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp---fpd~sFDlV~~s~~L 292 (637)
.+||||||.|.+...+|++ +++++++...-+ ...++.+.+.++ ++.+...|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 8999999999999999988 566666644322 234455667788 8888888865542 456699999987754
Q ss_pred ccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.. -...+++.+.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 78753 23369999999999999999985
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=77.67 Aligned_cols=119 Identities=8% Similarity=-0.012 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHHHhcc-cCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEec
Q 006633 198 PRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMA 272 (637)
Q Consensus 198 ~~g~~~~i~~L~~lL~~-~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d 272 (637)
....+...+.+.+.+.. .. +.+|||+|||+|.++..++.+ .+++++.++.....+.. .+...+. ++.+...|
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~--~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~-Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIV--DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIK-NLATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcC--CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEEch
Confidence 44456665666666542 23 348999999999999875554 35555554322221111 1222233 46677776
Q ss_pred ccc-CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~-Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
... ++.....||+|++..-+ .......++..+.. +|+|+|.+++..+
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 544 22234579999998743 22134455555554 4899999999865
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-06 Score=88.14 Aligned_cols=103 Identities=8% Similarity=0.113 Sum_probs=69.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeE-EEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLW-VMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~-~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
..+|||+|||.|.+...|+++-.. -.+++.+|.+++++..+.++ +...-++--+..+..+| ..+|++.+..++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 568999999999999888764100 13566777777888888765 22111111123344444 5689988876665
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.... -+...+|-++.|+|+|||.++++|.
T Consensus 134 ~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 134 FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4332 1356899999999999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.1e-06 Score=92.65 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC--C
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--Y 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp--f 278 (637)
.+...+...++ .+|||+|||+|..+..+++. .++++|+++..+.... +.+.+.+. ++.+...|...++ +
T Consensus 241 lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchh
Confidence 44555554444 48999999999999988875 2555555443322222 12223343 3677777776653 3
Q ss_pred CCCCeeEEEeccc------ccc-----CCc--CC-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRC------LIP-----WGQ--YA-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~------L~h-----~~~--~d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ ++||+|++..- +.+ |.. .+ ...++.++.++|||||.++.++.
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 78999997421 111 110 01 23579999999999999998754
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.3e-06 Score=81.64 Aligned_cols=141 Identities=20% Similarity=0.310 Sum_probs=89.7
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccc-cccCCC-C-Cccceeeec
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWC-EAMSTY-P-RTYDLIHAD 547 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wc-e~~~~y-p-~t~Dl~H~~ 547 (637)
|.. .++++++++|||.|-|-+.|+.+ .-.++.+|.++.-+..+.+|=- +.-| .|- ..++.+ | .+|||||+.
T Consensus 39 Lp~-~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 39 LPR-RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA-GLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HTT-SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT-T-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred cCc-cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC-CCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 556 89999999999999999999987 2345555665566777766532 2112 333 233333 5 999999999
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCceeEEeccCCCCCCcceEEEE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRIADHENGPRQREKILFA 617 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 617 (637)
.|+-...+.-++..++-.+...|+|||.+|+-.-.+ --+.|.++++..-=++.-..-..++ ..|.-|++
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLLA 192 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEee
Confidence 999888777678889999999999999999964322 2255666655555555443333233 45666665
Q ss_pred E
Q 006633 618 N 618 (637)
Q Consensus 618 ~ 618 (637)
+
T Consensus 193 ~ 193 (201)
T PF05401_consen 193 R 193 (201)
T ss_dssp E
T ss_pred e
Confidence 3
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.4e-06 Score=79.08 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=87.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----c-----ccchhhccccccCCCC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----G-----LIGTYQNWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----g-----l~~~~~~wce~~~~yp-~t~Dl~H~~ 547 (637)
..+|||+|||.|.++..|++++ -+|..+|.++.++..+.++ | +.-..+|+.+ .++ ..||+|=++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEEC
Confidence 4589999999999999998874 4667777776777776432 2 2222335444 334 589998665
Q ss_pred cccccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccCCCC
Q 006633 548 SIFSLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGP 608 (637)
Q Consensus 548 ~lfs~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~ 608 (637)
.-|.... ....++.++-++.|+|+|||.+++-.. ......+.+.+....|+......+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 5442210 122356789999999999999887533 223567778888888876654333333
Q ss_pred CCcceEEEEEe
Q 006633 609 RQREKILFANK 619 (637)
Q Consensus 609 ~~~~~~l~~~K 619 (637)
+..-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 33334444443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-05 Score=77.85 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeE-EEEeccccC-----CCCCCCeeEEEe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRL-----PYPSRAFDMAHC 288 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~-~~~~d~~~L-----pfpd~sFDlV~~ 288 (637)
.+.++||+|||+|.|+..|++++ ++++|+ +..|+.........+. +...+...+ +..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~-----~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDV-----GYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeC-----CHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 34589999999999999999984 455555 4444443333333321 222233322 212236787777
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCcccc----ccCCCCchhhhHHhHhhHHHHHHHhceeee
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESH----WKGWNRTTEDLKSEQNGIETIARSLCWKKL 359 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~----~~~w~~t~e~l~~~~~~ie~la~~l~w~~v 359 (637)
+..+ .+..+.+.|+| |.+++-.-|.--..+ .++--+.........+.+...+..++|...
T Consensus 150 S~~~----------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 SLIS----------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ehHh----------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 6544 57889999999 777765422211111 112223344444455556666666666543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=82.67 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=83.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-chhhccccccCCCC--CccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-GTYQNWCEAMSTYP--RTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~~~~~wce~~~~yp--~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||+|..+.++.+.+. -.|+.+|.++.++..+.++--. ++ . ..+.... ..||+|.|+-+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~-~---~~~~~~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGV-E---LNVYLPQGDLKADVIVANILA---- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC-C---ceEEEccCCCCcCEEEEcCcH----
Confidence 56899999999999888877643 1366677776777777665211 11 0 1111111 279999885321
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
-.+..++-++.|+|||||++|+++-. +....+.+.++...+.......+ +.-..++++|+
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 12457788999999999999999743 45677788888888887654433 23445566553
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-06 Score=87.54 Aligned_cols=101 Identities=8% Similarity=0.130 Sum_probs=69.9
Q ss_pred ceeEeeecccchhhhhhhcC---CCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||+|..+.+|++ .+- ..|+.+|.++.++..+.++ |+..-+.-.+..+...| ..||+|-++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45799999999999887765 232 3567778887899888776 33211111233444444 46898777655
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+.... .-....++-|+-|+|+|||.+++.|.
T Consensus 135 l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 54433 23457899999999999999999873
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.9e-05 Score=79.34 Aligned_cols=94 Identities=23% Similarity=0.312 Sum_probs=60.6
Q ss_pred EEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 221 TAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
+|||+|||+|..+..++... |+++|++ ..+++.|+ ..+. +..+...+ .-.+.. +.||+|+|+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis-----~~Al~~A~~Na~~~~l~~~~~~~~d-lf~~~~-~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDIS-----PDALALARENAERNGLVRVLVVQSD-LFEPLR-GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECC-----HHHHHHHHHHHHHcCCccEEEEeee-cccccC-CceeEEEeCCC
Confidence 79999999999999999873 4555554 44444443 3343 23333322 111233 48999999875
Q ss_pred cccCC-----cC------------------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 292 LIPWG-----QY------------------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 292 L~h~~-----~~------------------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+-. ++ ....++.++.+.|+|||.+++..
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 43332 00 12257888999999999999974
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=85.75 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH------------cCCCeEEEEecccc-CCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE------------RGVPALIGVMASIR-LPYP 279 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e------------rg~~~~~~~~d~~~-Lpfp 279 (637)
...++||+||||+|..++.+++. .++++++ ++++++.|++ ....+.+...|+.. +.-.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEI-----DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDL-----DGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC-----CHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 34569999999999999888876 2455555 5566666664 12456777777654 3344
Q ss_pred CCCeeEEEeccccccCCc----CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQ----YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~----~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+.||+|++... .+... -....+++.+.+.|+|||.|++..
T Consensus 224 ~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 SSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 578999998632 12110 023568999999999999998863
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-05 Score=78.27 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=75.2
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC-C-eEEEEeccccCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-P-ALIGVMASIRLP 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~-~-~~~~~~d~~~Lp 277 (637)
.|...+.+.+|+ +|||.|.|+|.++++|+.. .-.++.+ +..+...+.|+++ +. + +.+...|....-
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~ty---E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTY---EIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEE---EecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 466666777776 9999999999999999964 1223334 4455555555544 22 2 556666666655
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+++ .||.|+. ..+ ++-.+++.+..+|+|||.+++..|.
T Consensus 160 ~~~-~vDav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 160 DEE-DVDAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccc-ccCEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 554 8999986 455 7888999999999999999998873
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.2e-06 Score=82.37 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=83.9
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-C-CCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-Y-PRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-y-p~t~Dl~H~ 546 (637)
.-.+|||+|||+|.+...|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |+.+.+.. + +.+||+|-+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3578999999999999998764 21 3566777777777777653 33 22233 33233432 5 488999876
Q ss_pred ccccc-----cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCceeEE
Q 006633 547 DSIFS-----LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 547 ~~lfs-----~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
+.... ....+...+.+|-++.|+|+|||.++|. +.......+.+.+..-.|.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 42221 1122334688999999999999999996 6667777888877777787763
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.7e-05 Score=79.36 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcc--cCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHH---HHHHHc----C---------
Q 006633 202 DAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQV---QFALER----G--------- 263 (637)
Q Consensus 202 ~~~i~~L~~lL~~--~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i---~~A~er----g--------- 263 (637)
...++.|.+.++. ......+||--|||.|+++-.++.+|..+-+. +.+--|+ ++.+.. +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gn---E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGN---EFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEE---EchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 4455666666653 22334589999999999999999997655444 4444442 222211 0
Q ss_pred -----------------------------CCeEEEEeccccCCCCC---CCeeEEEeccccccCCcCCHHHHHHHHHhcc
Q 006633 264 -----------------------------VPALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYADGLYLIEVDRVL 311 (637)
Q Consensus 264 -----------------------------~~~~~~~~d~~~Lpfpd---~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvL 311 (637)
.+.....+|......++ ++||.|++.+.+ .-.. +.-.+++.|.++|
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~-Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAE-NIIEYIETIEHLL 192 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echH-HHHHHHHHHHHHh
Confidence 01222233333333233 689999988644 5554 7889999999999
Q ss_pred cCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccC
Q 006633 312 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 363 (637)
Q Consensus 312 KPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~ 363 (637)
||||+++=.+|-........ ......++-.++++..++++++|+.+.+..
T Consensus 193 kpgG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 193 KPGGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ccCCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99999888888443222110 112223566688899999999998876543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=82.40 Aligned_cols=98 Identities=10% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAF 283 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sF 283 (637)
..++||+||||+|.++..++++ .++++++++ ..++.+++. ...+.+...|... +.-..++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~-----~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE-----KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH-----HHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3459999999999999888776 356666654 333333332 1234555555432 12225789
Q ss_pred eEEEeccccccCCcC-C--HHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQY-A--DGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~-d--~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++.... +.... . ...+++.+.+.|+|||.+++..
T Consensus 147 DvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 147 DVIIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred cEEEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 999986542 22220 1 4578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.5e-06 Score=81.72 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=68.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cchhh-ccccccCCCCCccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||.|.+..+|++..- ...+..+|.++.++..+.++.- +-.+. |. +.++..+.+||+|.+..++...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc-
Confidence 36799999999999999987531 1224556666677777766542 11111 21 2333334899999998776533
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+...+|-++.|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 356899999999999999999974
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=82.28 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=68.8
Q ss_pred CEEEEECCCCc----hHHHHHhhc------CCEEEEcCccccHHHHHHHHHHc--------C------------------
Q 006633 220 RTAIDTGCGVA----SWGAYLMSR------NILAVSFAPRDTHEAQVQFALER--------G------------------ 263 (637)
Q Consensus 220 r~VLDIGCGtG----~~a~~La~~------~v~~vdisp~Dls~a~i~~A~er--------g------------------ 263 (637)
-+|+..||.+| +++..|.+. ++.+++. |++...++.|++. +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~at---DIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFAS---DIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEE---ECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence 58999999999 555555553 2223322 5555566555432 0
Q ss_pred ----------CCeEEEEeccccCCCC-CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 ----------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ----------~~~~~~~~d~~~Lpfp-d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.|...+....+++ .+.||+|+|..+++|+.++....++..+.+.|+|||+|++..
T Consensus 194 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 194 GLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0134555555554443 578999999999999987678899999999999999987763
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=9e-06 Score=84.71 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=85.5
Q ss_pred hcchhhHHHHHHHHHHHHHh-hhccCCCCCceeEeeecccchh----hhhhhcCC----CeEEEEeccCCCCcchhHHHH
Q 006633 449 EMFREDTALWKKRVTYYKSV-DYQLAQPGRYRNLLDMNAYLGG----FAAALVDD----PLWVMNTVPVEAKINTLGVIY 519 (637)
Q Consensus 449 ~~f~~d~~~w~~~v~~y~~~-~~~l~~~~~~r~vlD~~~g~gg----faa~l~~~----~v~~mnv~~~~~~~~~l~~~~ 519 (637)
..|-.|...|..-.+..... +..... ++.-+|+|+|||+|- .|-.|.+. .-|...|+.+|.++.+|..+.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~-~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRH-GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCC-CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 34777778888765543322 221122 345789999999994 55555442 124568899999988998887
Q ss_pred hhcccc-----------------------------------hhhccccccCCCC-CccceeeeccccccCCCCcCHHHHH
Q 006633 520 ERGLIG-----------------------------------TYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVL 563 (637)
Q Consensus 520 eRgl~~-----------------------------------~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l 563 (637)
+ |+.+ ..||..+ ..+| +.||+|.|..+|.... .-....++
T Consensus 150 ~-~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l 225 (264)
T smart00138 150 A-GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLL 225 (264)
T ss_pred c-CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHH
Confidence 5 3211 1122222 1233 8999999988876543 23456899
Q ss_pred HHHhhcccCCcEEEEEeCH
Q 006633 564 LEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 564 ~e~dRiLrPgG~~i~~d~~ 582 (637)
-++-|+|+|||++++....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHhCCCeEEEEECcc
Confidence 9999999999999997654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=81.76 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lp 277 (637)
.+++.+.+++.... +.+|||+|||+|.++..|++++..++++ |+++.+++.|+ ..+. ++.+..+|...+.
T Consensus 160 ~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~~V~gv---D~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGMQLTGI---EISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 34444555554223 3489999999999999999885444444 44444544443 3344 4788888876654
Q ss_pred C-CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 278 Y-PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 278 f-pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
. ..+.||+|++..-. . .....+.++...++|++.++++..|.
T Consensus 235 ~~~~~~~D~Vv~dPPr---~--G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 235 TAQGEVPDLVLVNPPR---R--GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred HhcCCCCeEEEECCCC---C--CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 2 34579999987522 2 12223334445578999999886544
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-06 Score=84.91 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=64.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|..+..+++. +- ...|+.+|.++.++..+.++ |+ +-.++ |. +.+ ++| .+||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEcC
Confidence 569999999998765443322 10 01355567666788888765 32 11111 11 222 344 7999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+|.... +.+.+|-|+-|+|||||.+++.|
T Consensus 155 v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 775433 45889999999999999999975
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=79.28 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--c
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--I 524 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~ 524 (637)
|....+.=..++......+..........+|||+|||.|.++..|.+... .++-+|.++.++..+.++ |+ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44444443444555554443221112356899999999999998876543 355666665666666553 32 2
Q ss_pred chhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 525 GTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 525 ~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +..+.....|.+||+|.+.+++... .+.+.+|-++.++|+|||.+++++
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 2222 1111111235789999997776543 356889999999999999999975
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.4e-05 Score=80.63 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=65.2
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC--CCCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L--pfpd~sF 283 (637)
.++||+||||.|..+..++++ .++++++++ ..++.+++. ...+.+...|+... ..+++.|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~-----~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK-----MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence 569999999999999999887 345555544 444444432 23467777775332 1235789
Q ss_pred eEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++-..- ++... ....+++.+.+.|+|||.++...
T Consensus 167 DvIi~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 167 DAIIVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CEEEEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 999985422 33221 13468999999999999998753
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.6e-06 Score=72.39 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=52.3
Q ss_pred eeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccc--hhhccc-cccCCCC-CccceeeeccccccC
Q 006633 482 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG--TYQNWC-EAMSTYP-RTYDLIHADSIFSLY 553 (637)
Q Consensus 482 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~--~~~~wc-e~~~~yp-~t~Dl~H~~~lfs~~ 553 (637)
||+|||+|.+..+|.++- -...++.+|.++.++..+.+| +.-. ...--. +.+...+ ++||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998762 335666777777788444443 2100 111001 2233333 599999999998876
Q ss_pred CCCcCHHHHHHHHhhcccCCcEE
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSV 576 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~ 576 (637)
-+++.+|-.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.7e-05 Score=85.00 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc------------CCCeEEEEecccc-CCCCC
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER------------GVPALIGVMASIR-LPYPS 280 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er------------g~~~~~~~~d~~~-Lpfpd 280 (637)
..++|||||||+|..+..++++. ++++ |+++.+++.+++. ...+.+...|... +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~V-----Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLV-----DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEE-----ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 35689999999999999988762 3444 5556666666652 1346677777654 22335
Q ss_pred CCeeEEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++||+|++.... +..+. ....+++.+.+.|||||.+++..
T Consensus 372 ~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 789999997432 32210 12458899999999999999864
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=75.55 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~ 275 (637)
+..|...+.+.+|+ +|||.|.|+|+++..|+.. .-.+..+ +.++...+.|+++ +. .+.+...|...
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~---E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTY---EFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEcc---ccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 44577777888877 9999999999999999875 2234444 4455555555433 33 46777778765
Q ss_pred CCCC---CCCeeEEEeccccccCCcCCHHHHHHHHHhcc-cCCeEEEEEeC
Q 006633 276 LPYP---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVL-RPGGYWILSGP 322 (637)
Q Consensus 276 Lpfp---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvL-KPGG~Lvls~p 322 (637)
..|+ ++.||.|+. .++ ++-.++..+.++| ||||.+++-.|
T Consensus 104 ~g~~~~~~~~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 104 EGFDEELESDFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp G--STT-TTSEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccccccCcccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECC
Confidence 4443 367999986 444 5666899999999 99999999887
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.8e-05 Score=77.89 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=62.3
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC-C-----CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-----YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L-p-----fpd~sFDl 285 (637)
.++|||+|||+|..+..|+.. .++++++++.....+...+ .+.+. .+.+..+++... + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 348999999999877777653 3566666443222222222 23343 366666665432 1 12468999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+.-. ..+ ....++.++.++|||||.+++..
T Consensus 148 VfiDa----~k~-~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDA----DKP-NYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECC----CHH-HHHHHHHHHHHhcCCCeEEEEEc
Confidence 98743 222 45678999999999999998864
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.8e-05 Score=82.78 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=80.3
Q ss_pred HHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHH----HHhhcccchhhccccccCC
Q 006633 462 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGV----IYERGLIGTYQNWCEAMST 536 (637)
Q Consensus 462 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~eRgl~~~~~~wce~~~~ 536 (637)
...+..++..+.= ...-+|||+|||-|+.+-+++++ +| ||+.++.+++|+.. |.++|+-.-.+.--+....
T Consensus 58 ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 58 RAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 3334444433332 34789999999999999999887 66 55666666677665 4568885433322233344
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++..||=|-+.|+|..... -..++++--+.++|+|||.+++-
T Consensus 134 ~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 134 FEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 5556999999999986554 36789999999999999999884
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.8e-05 Score=77.34 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
...+|||+|||.|.+..++.+..--.-.++.+|.++..+..+.++.- +-.++ |..+ .+ ++ .+||+|++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CC-CCCCcEEEEEEeeee
Confidence 46799999999999999887652100245555655567777776642 12222 2111 12 33 689999987665
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.. -.+...+|.++.++|+|||++++.+
T Consensus 117 ~~---~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN---VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC---cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 3457899999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.4e-05 Score=84.80 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~ 274 (637)
+.+++.+.+++...++ .+|||+|||+|.++..|++.. +++++++ +.+++.|++ .+. ++.+..+|..
T Consensus 278 ~~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~~V~~vE~~-----~~av~~a~~n~~~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 278 EKLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAKSVVGIEVV-----PESVEKAQQNAELNGIANVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCCEEEEEEcC-----HHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence 3344555555544443 489999999999999999874 5555554 444444432 333 5778888765
Q ss_pred cC----CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RL----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~L----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ++.+++||+|+....-.. -...+++.+.+ |+|++.++++..
T Consensus 351 ~~l~~~~~~~~~~D~vi~dPPr~G----~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDPPRKG----CAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred HHHHHHHhcCCCCCEEEECcCCCC----CCHHHHHHHHh-cCCCEEEEEcCC
Confidence 42 344568999997553211 23456666554 899998888743
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.8e-06 Score=77.04 Aligned_cols=99 Identities=22% Similarity=0.355 Sum_probs=72.8
Q ss_pred CceeEeeecccchhhhhhhcC-C--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CCCccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVD-D--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~-~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp~t~Dl~H 545 (637)
+.-+|||+|||+|-+.-.|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ ++. |+..||+|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEE
Confidence 456899999999999999983 2 23 356668888899888884 55 23333 3323 221 458999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+.++| .+-.+.+.+|-+|-|.|+|||.+++++..
T Consensus 79 ~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98888 34456678999999999999999998765
|
... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.8e-05 Score=73.69 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=59.7
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC----CCeEEEEecccc-C---CCCCCCeeE
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR-L---PYPSRAFDM 285 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~~-L---pfpd~sFDl 285 (637)
.+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+.+...+-.. . ....+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4569999999999888888776 466677644 2222222332222 234444443211 1 123468999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+++.+++ ... ..+.++.-+.++|+|+|.+++..+
T Consensus 123 IlasDv~Y-~~~-~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEE-LFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GG-GHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHH-HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999994 444 788999999999999999877754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.2e-05 Score=81.12 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=83.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC----C-CeEE-EEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V-PALI-GVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg----~-~~~~-~~~d~~~Lp 277 (637)
+...+.++.....|. .|||-=||||++.....-.|..+++. |+...|++-|+.+. + +..+ ...|+..+|
T Consensus 185 lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 185 LARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 334455565556655 99999999999988887778888877 88888888776542 2 2323 344899999
Q ss_pred CCCCCeeEEEecccc-----ccCC--cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCL-----IPWG--QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L-----~h~~--~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||.|++-.-. ..-. ++-...+|+.+.++||+||++++..|
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999999983311 0111 01356789999999999999999977
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.5e-05 Score=80.65 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=70.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhh--ccccccCCCCCccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQ--NWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~--~wce~~~~yp~t~Dl~H~~~lf 550 (637)
....|||+|||.|.++..|.+.. .+++-+|.++..+..+.++ ++...++ ++.+.....+..||+|.+..+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999998775 3566677776777776655 3311121 2222211234789999998777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.... +...+|-++.|+|+|||.+++...
T Consensus 125 ~~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 6544 457899999999999999999853
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=77.88 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=70.4
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCC-CccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
...|||+|||+|.+..+|.+. +- .++..+|.++.++..+.++.- +.+.+ ...+.+++ ++||+|-+.+++....
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~--~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQ--GSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEE--eeccCCCCCCCEEEEEECChhhhCC
Confidence 567999999999999999775 32 357777888889999877521 12222 12233555 8999999999987653
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-.+..+|-||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8e-05 Score=73.73 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=67.1
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
...+|||+|||+|.++..++.. +- -.|+.+|.++.++..+.+ .|+ +-+++ |.-+.+...+..+|.++.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3568999999999998877532 11 235555666567666554 244 22221 11111211222356655422
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGME 596 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~ 596 (637)
...++.++-++.|+|+|||++++... .+.+..+.+.++.+.
T Consensus 118 -------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 23578999999999999999999753 345555666665543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.8e-05 Score=76.62 Aligned_cols=98 Identities=20% Similarity=0.338 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC---------C-------------------
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV---------P------------------- 265 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~---------~------------------- 265 (637)
....+|||||-.|.++..+++. .+.++||++ ..++.|++... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~-----~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP-----VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccH-----HHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3558999999999999999886 466776644 45555553210 0
Q ss_pred ------------e-----EEEEeccccCCCCCCCeeEEEeccc----cccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 266 ------------A-----LIGVMASIRLPYPSRAFDMAHCSRC----LIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 266 ------------~-----~~~~~d~~~Lpfpd~sFDlV~~s~~----L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
. .+......-+.+....||+|+|-.+ -..|.++-...+|..+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 0000001112234567999998432 23455545668999999999999999996
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=74.89 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=55.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----h-cccchhhcccccc--CCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----R-GLIGTYQNWCEAM--STYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----R-gl~~~~~~wce~~--~~yp~t~Dl~H~~~lf 550 (637)
...|||+|||+|++..+|.+.-= .-.|...|.++.++..+.+ + ++..+..|-.+.. ...+.+||+|=++
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--- 148 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD--- 148 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC---
Confidence 45899999999999999977510 0134555666666664433 2 2222222322211 1234668875331
Q ss_pred ccCCCCcCH---HHHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEM---EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~---~~~l~e~dRiLrPgG~~i~~ 579 (637)
-.+. ..+|.|+-|+|||||.++|+
T Consensus 149 -----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 149 -----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1221 23577999999999999993
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.8e-05 Score=77.10 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=76.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc--cchhhccccccC--CCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQNWCEAMS--TYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~~wce~~~--~yp-~t~Dl~H~~~ 548 (637)
-..|||+|||.|.|+.+|+.+.- -.||+.+|.+..++..+.+ .|+ +-+.+.=...+. .+| .++|.|+++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46899999999999999987521 1367777777677766654 344 222221011111 245 5899887642
Q ss_pred c---cc--cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCC-cee
Q 006633 549 I---FS--LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGME-WEG 599 (637)
Q Consensus 549 l---fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~-W~~ 599 (637)
- +. ..+.|...+.+|-++-|+|||||.+++. |..+....+.+.+...- |+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 1 11 1224556688999999999999999985 66666666666554432 443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00042 Score=84.26 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=65.0
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc--------------C--CCeEEEEeccccCCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------------G--VPALIGVMASIRLPY 278 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er--------------g--~~~~~~~~d~~~Lpf 278 (637)
+.+|||+|||+|.++..|+++ .++++|+++..+..+..+..+.. . ..+.+...|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 348999999999999999875 36667666544443333322210 0 1367777775443 2
Q ss_pred CC--CCeeEEEeccccccCCc--------------------------------CC----HHHHHHHHHhcccCCeEEEEE
Q 006633 279 PS--RAFDMAHCSRCLIPWGQ--------------------------------YA----DGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 279 pd--~sFDlV~~s~~L~h~~~--------------------------------~d----~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+ ..||+|+++.-.+.-.+ +| ..+++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 36999999654321110 00 146788888999999999997
Q ss_pred e
Q 006633 321 G 321 (637)
Q Consensus 321 ~ 321 (637)
.
T Consensus 278 i 278 (1082)
T PLN02672 278 M 278 (1082)
T ss_pred E
Confidence 5
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=63.08 Aligned_cols=95 Identities=28% Similarity=0.416 Sum_probs=63.0
Q ss_pred EEEECCCCchHH--HHHhhcCCEEEEcCccccHHHHHHHHHHcC----CC-eEEEEecccc--CCCCC-CCeeEEEeccc
Q 006633 222 AIDTGCGVASWG--AYLMSRNILAVSFAPRDTHEAQVQFALERG----VP-ALIGVMASIR--LPYPS-RAFDMAHCSRC 291 (637)
Q Consensus 222 VLDIGCGtG~~a--~~La~~~v~~vdisp~Dls~a~i~~A~erg----~~-~~~~~~d~~~--Lpfpd-~sFDlV~~s~~ 291 (637)
+||+|||+|... ..+...+...+++ |.+..++..+.... .. +.+...+... +++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGV---DLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEE---eCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333322234343 44444444332222 11 4566666555 78877 589999 7666
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++. .....+.++.++|+|+|.+++...
T Consensus 128 ~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLL--PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 65666 378899999999999999999865
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=6e-05 Score=76.52 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhhcc-cc--hhhccccccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYERGL-IG--TYQNWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgl-~~--~~~~wce~~~~yp~t~Dl~H~~~l 549 (637)
.+..+|||+|||+|.++..|.+. .-...+|+.+|.+++++..+.++.- .+ ....=++.+..-+.+||+|-++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45678999999999998887641 1112468888998899999988732 11 111112344443589999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|....+. .+..+|-||-|++| |.+++.|
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 7654432 35679999999999 5666665
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.9e-05 Score=78.36 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPY 278 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpf 278 (637)
..++.+.+.+....+ .+|||||||+|.++..|++++ ++++|+ ++.+++.++++. .++.+..+|...+++
T Consensus 29 ~i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~-----d~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEI-----DRDLAPILAETFAEDNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHhhccCceEEEEChhhcCCH
Confidence 345666666655544 489999999999999999884 455555 445555555432 467888889888877
Q ss_pred CCCCeeEEEeccc
Q 006633 279 PSRAFDMAHCSRC 291 (637)
Q Consensus 279 pd~sFDlV~~s~~ 291 (637)
++-.+|.|+++.-
T Consensus 102 ~~~~~~~vv~NlP 114 (272)
T PRK00274 102 SELQPLKVVANLP 114 (272)
T ss_pred HHcCcceEEEeCC
Confidence 6433588888763
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=77.87 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=61.8
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCC-CCCCCeeEEEeccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCLI 293 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lp-fpd~sFDlV~~s~~L~ 293 (637)
.+|||+|||+|.++..++.++..++.+ |+++.+++.|+ ..+. ++.+...|..... -....||+|+...-.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~v---E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr- 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGI---EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR- 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC-
Confidence 489999999999999999875434333 33444444433 3343 5778877765432 122469999997633
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. -...+++.+. .++|++.++++..
T Consensus 311 --~G-~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 --RG-IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CC-CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 21 2345555554 4799999999865
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=83.73 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=79.0
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc---cchhhccccccCCCC-Cccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|.++..+.+. +- .+|+.+|.+++++..+.++.- +.+.+.-.+.+ +++ .+||+|-+.+++..
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 468999999999988887653 21 356667777788888877631 22222111222 344 79999988777655
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------------HHHHHHHHHhcCCceeE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-----------------ILVKIKSITDGMEWEGR 600 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-----------------~~~~~~~~~~~~~W~~~ 600 (637)
.. +.+.+|-|+-|+|+|||.+++.+... ..+.+.++++...++..
T Consensus 191 ~~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 191 WP---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 44 44789999999999999998864321 13556666777777654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=79.87 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=63.2
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccCC--C--CCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLP--Y--PSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~Lp--f--pd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..++..+ ++++|+++..+..+..+.+ .++. .+.+..+|..... + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~-~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 3589999999999988766553 5666665544433332222 2343 4677777765431 1 3468999999
Q ss_pred ccccccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 289 SRCLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 289 s~~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..-...-... ....++..+.++|+|||.|++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7532111100 23345566789999999999864
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.6e-05 Score=75.73 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=70.4
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhhcccchhhcccccc------CCCC-Cccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM------STYP-RTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~------~~yp-~t~Dl~H 545 (637)
..+|||+|||+|++..++.++ .|+.. |.++ +. ...++--+..|..+.. ..+| .+||+|=
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~v-----Dis~-~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAV-----DLQP-MK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEE-----eccc-cc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 568999999999998877553 14443 3331 11 0112211112333211 1244 6899887
Q ss_pred eccccc--cC------CCCcCHHHHHHHHhhcccCCcEEEEE-eCH----HHHHHHHHHHhcCCceeEEe-ccCCCCCCc
Q 006633 546 ADSIFS--LY------KDRCEMEDVLLEMDRILRPEGSVIIR-DDV----DILVKIKSITDGMEWEGRIA-DHENGPRQR 611 (637)
Q Consensus 546 ~~~lfs--~~------~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~----~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~ 611 (637)
+++... .. ...+.++.+|.++.|+|||||.+++. ... +++..+++ .+ |.+.+. |.-......
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 754311 11 11123478999999999999999994 222 23333333 22 444433 322333357
Q ss_pred ceEEEEE
Q 006633 612 EKILFAN 618 (637)
Q Consensus 612 ~~~l~~~ 618 (637)
|+.+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8999885
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=75.90 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpf 278 (637)
...++.+.+.+...++ .+|||||||+|.++..|++++..++.+ |+++.+++.+.++ ..++.+..+|...+++
T Consensus 15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~v---Eid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAI---ELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 3456667776655544 489999999999999999985433333 4445555555543 2357788888888776
Q ss_pred CCCCeeEEEecccc
Q 006633 279 PSRAFDMAHCSRCL 292 (637)
Q Consensus 279 pd~sFDlV~~s~~L 292 (637)
+ .||.|+++..+
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998765
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.2e-05 Score=81.77 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=76.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH----Hhhcc--cchhh-ccccccCCCC-Cccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI----YERGL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~eRgl--~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
.-..+||+|||.|.|..+|+.+.= -.|++.+|-+..++..+ .++|+ +-+++ |.-+-+..+| .++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln- 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH- 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-
Confidence 346899999999999999986520 12666666665565444 44565 22222 2212233455 899999874
Q ss_pred cccc-C-C--C-CcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC-Ccee
Q 006633 549 IFSL-Y-K--D-RCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM-EWEG 599 (637)
Q Consensus 549 lfs~-~-~--~-~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~-~W~~ 599 (637)
|.. | + + |=..+.+|-|+-|+|+|||.+.| +|..+....+.+.+... +++.
T Consensus 200 -FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 -FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred -CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 432 1 1 1 11236899999999999999988 57777777766665444 4444
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=75.54 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=74.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
...|||+|||.|.++..++..+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+ ..||+|.++--|
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 46899999999999998887643 2566667666677655542 33 11221 3322 234 689999987433
Q ss_pred ccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEe
Q 006633 551 SLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 551 s~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
.... ....++.++-++-|+|+|||.+++-. .......+.+.+++-.|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 2110 11225678888999999999999842 2223344555555555655543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.1e-05 Score=84.10 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEecc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL--PYPSRAFDMAHCSR 290 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~L--pfpd~sFDlV~~s~ 290 (637)
....+||||||.|.++..++.. ++.++++...-+..+. +.+.+.++ ++.+...+...+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999987 5666666443222222 23334444 455555554322 27889999999877
Q ss_pred ccccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 291 CLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 291 ~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-= +|+.. -...++..+.++|||||.+.+.+
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 55 78642 23478999999999999999975
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.2e-05 Score=89.29 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=65.7
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL-PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~L-pfpd~sFDlV~~s~~ 291 (637)
+++|||+|||+|.++..++..+ |+++|+++..+..+..++. .++. .+.+..+|.... .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 3589999999999999999874 4555554443333332222 2333 367777775432 111468999999642
Q ss_pred cccC----------CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPW----------GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~----------~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...- .. +...++..+.++|+|||.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~-~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQR-DHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1110 11 345678889999999999998754
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.5e-05 Score=76.57 Aligned_cols=136 Identities=17% Similarity=0.306 Sum_probs=84.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh---cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.+|++..- ...|+.+|.++.++..+.+. +. +-+++ |+ +...+ ..||+|-++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45799999999999999976520 13566667776777777664 22 22222 33 33344 78999987533
Q ss_pred cccC-------------C-------CC---cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCC
Q 006633 550 FSLY-------------K-------DR---CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHEN 606 (637)
Q Consensus 550 fs~~-------------~-------~~---c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 606 (637)
+... . .. -.+..++-++.++|+|||++++--....-..++++++...+...... .+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC
Confidence 2210 0 00 11246788888999999999996544455667777776666422221 11
Q ss_pred CCCCcceEEEEEe
Q 006633 607 GPRQREKILFANK 619 (637)
Q Consensus 607 ~~~~~~~~l~~~K 619 (637)
-.+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 125678888765
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.3e-05 Score=88.80 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-----cchhhccccccCC-C-CCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMST-Y-PRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~~wce~~~~-y-p~t~Dl~H~~~l 549 (637)
..+|||+|||+|.++.+|++. + ..+|+.+|.+..++..+.++-- +-+++.=+..++. + |.+||+|.++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 458999999999998888653 2 2467778888888888876521 1111111123332 4 489999988665
Q ss_pred cccC-------C---CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLY-------K---DRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~-------~---~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+-.+ . +.-++..+|-|+-|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4311 0 123567899999999999999999874
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=75.81 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCc----hHHHHHhhcCC----EEEEcCccccHHHHHHHHHH---------cCCC---------------
Q 006633 218 SIRTAIDTGCGVA----SWGAYLMSRNI----LAVSFAPRDTHEAQVQFALE---------RGVP--------------- 265 (637)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~~v----~~vdisp~Dls~a~i~~A~e---------rg~~--------------- 265 (637)
..-+|+-.||++| +++..|.+... ..+.|.+.|++...++.|+. ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 56666655421 12333333555566655542 1111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 266 ----------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 266 ----------~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.|...+....++..+.||+|+|-.+++.+..+...+++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 22333333333324567999999999999998677899999999999999999963
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=77.75 Aligned_cols=97 Identities=21% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
....+|+|.|.|..+..+... .+.+++++...+.+++...+ ..+...-+|...- .|.+ |+|+.-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TPKG--DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CCCc--CeEEEEeecccCC
Confidence 458999999999999988876 67888884433332222222 2344444443222 3333 6999999999999
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++..++|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 88899999999999999999999864
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.7e-05 Score=76.67 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H~~ 547 (637)
....+|||+|||+|.+++.|++.-=-.-.|+.+|..+.++..+.++ |+ +-+.+ +..+..++ ..||+|++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCEEEEC
Confidence 3467999999999999987765300001233344444666666554 33 22221 23344443 789999984
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+. .+.+.-++-+.|+|||.+++--
T Consensus 153 ~~---------~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AA---------GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC---------cccchHHHHHhhCCCcEEEEEE
Confidence 43 3444556777899999999853
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=74.22 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lp 277 (637)
..++.+.+.+...++ .+|||||||+|.++..|+++. ++++++ ++.+++.+.++ ..++.+...|+..++
T Consensus 16 ~i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~~iE~-----d~~~~~~l~~~~~~~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 16 SVIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAKKVTAIEI-----DPRLAEILRKLLSLYERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHHhCcCCcEEEEECchhcCC
Confidence 345566666654443 499999999999999999884 455555 44455544433 245778888888877
Q ss_pred CCCCCee---EEEecccc
Q 006633 278 YPSRAFD---MAHCSRCL 292 (637)
Q Consensus 278 fpd~sFD---lV~~s~~L 292 (637)
++ .|| +|+++.-+
T Consensus 89 ~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 89 LP--DFPKQLKVVSNLPY 104 (253)
T ss_pred hh--HcCCcceEEEcCCh
Confidence 65 466 88877543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=72.99 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=85.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----C---CCeEEEEecccc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G---VPALIGVMASIR 275 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g---~~~~~~~~d~~~ 275 (637)
+.+.+.+.-..+...+.+|||...|-|.++...+++|. .++.+ +..+.-++.|.-+ + ..+.+..+|+..
T Consensus 120 ~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 120 LEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred HHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 34444443333344456999999999999999999975 44444 2222333333311 1 135666677655
Q ss_pred C--CCCCCCeeEEEeccc-cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHH
Q 006633 276 L--PYPSRAFDMAHCSRC-LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 352 (637)
Q Consensus 276 L--pfpd~sFDlV~~s~~-L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~ 352 (637)
. .|+|.+||+|+--.- |.+-..-.-+.+.+|++|+|||||.++-...... .++.+ ...+..+.+..+
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg--~ryrG--------~d~~~gVa~RLr 266 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG--KRYRG--------LDLPKGVAERLR 266 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC--ccccc--------CChhHHHHHHHH
Confidence 4 488999999984211 1011110456789999999999999987642111 11111 112344666677
Q ss_pred Hhceeeecc
Q 006633 353 SLCWKKLIQ 361 (637)
Q Consensus 353 ~l~w~~v~~ 361 (637)
+.+|.++..
T Consensus 267 ~vGF~~v~~ 275 (287)
T COG2521 267 RVGFEVVKK 275 (287)
T ss_pred hcCceeeee
Confidence 788886653
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=75.34 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=75.3
Q ss_pred ccCCCCCceeEeeecccchhhhhhhcCCCeEE------EEeccCCCCcchhHHHHhhcccchhh-----cc----ccccC
Q 006633 471 QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWV------MNTVPVEAKINTLGVIYERGLIGTYQ-----NW----CEAMS 535 (637)
Q Consensus 471 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~------mnv~~~~~~~~~l~~~~eRgl~~~~~-----~w----ce~~~ 535 (637)
.|++ +..-++|||+||+|=.|..+.++ |-. -+|.-.|-+++||.+...|-.-+-|. -| .|.++
T Consensus 95 ~L~p-~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGP-GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCC-CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 4666 66799999999999888877653 111 23333455558998887776321111 13 25666
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhc
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDIL-VKIKSITDG 594 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~ 594 (637)
|| .+||+.-.. |+. .+--+++..|-|+-|||+|||.|.+=+=.++- ..|+.+...
T Consensus 173 -Fdd~s~D~yTia--fGI-RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 173 -FDDDSFDAYTIA--FGI-RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred -CCCCcceeEEEe--cce-ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 87 999985531 221 11235689999999999999999987644433 344444443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.3e-05 Score=63.43 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=62.9
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH---hhcc---cchhh-ccccccCCCCCccceeeecccccc
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY---ERGL---IGTYQ-NWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---eRgl---~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
+|+|+|||.|++...+.+.+. ..+...|.+++.+..+. +.+. +-.++ |+.+....-+..||++.+++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999987432 34455555545555444 1121 22232 222211113478999999888775
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. .-....++-.+.+.|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 235578899999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00045 Score=74.03 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccc------CCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCC--eEE
Q 006633 201 ADAYIDDIGKLINLK------DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALI 268 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~------~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~--~~~ 268 (637)
.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...+.. +.+
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 456777777776421 234568999999999888777765 45667776544444443333221232 333
Q ss_pred EE-eccccCC----CCCCCeeEEEeccccc
Q 006633 269 GV-MASIRLP----YPSRAFDMAHCSRCLI 293 (637)
Q Consensus 269 ~~-~d~~~Lp----fpd~sFDlV~~s~~L~ 293 (637)
.. .+...+. .+.+.||+|+|+.-++
T Consensus 171 ~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 171 RLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 32 1222211 2467899999998653
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.8e-05 Score=76.86 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=74.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCC----CC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMST----YP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~----yp-~t~Dl~H~~~lfs 551 (637)
.-.|||+|||-|.++..|+..+ -+|..+|.++..++++..+.+..-+. +|= .+.. -. .+||.|-|..|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHH
Confidence 4579999999999999999999 68999999999999998777633222 111 1111 11 5899888866666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+. +.+.++.+..+.|||||.++++.-
T Consensus 136 Hv~---dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVP---DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEecc
Confidence 444 458899999999999999999853
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00047 Score=71.30 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcccC-CCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CCC--eEEEEe
Q 006633 201 ADAYIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVM 271 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~-g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~~--~~~~~~ 271 (637)
.+++++.+.+.+.... .....+||+|||+|..+..|+.. +.+++.+ |.+++++..|.++ ... +.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai---D~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI---DVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE---eccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 4666777766665322 12337999999999999888875 4444444 6677777766654 121 222211
Q ss_pred ----c-cccCCCCCCCeeEEEeccccccCCc------C------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ----A-SIRLPYPSRAFDMAHCSRCLIPWGQ------Y------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 ----d-~~~Lpfpd~sFDlV~~s~~L~h~~~------~------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ ....+...+.+|+++|+.-.+.-.+ + ....++.-+.|.|+|||.+++...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 1223456789999999764422110 0 111356677899999999999853
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00016 Score=69.76 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=82.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC-----C
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----Y 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp-----f 278 (637)
..+.+...+... ++.-|||+|.|||.++..++++++.-.++...+.+......-.+......+..+|+..+. +
T Consensus 36 lA~~M~s~I~pe--sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPE--SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCcc--cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 334444444433 445899999999999999999965433443345566666665566666667777766554 5
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++..||.|+|..-+..++....-++++.+...|++||.++...
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 6788999999766655654345678999999999999998864
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.4e-05 Score=80.11 Aligned_cols=97 Identities=23% Similarity=0.268 Sum_probs=71.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
+..+||+|||.|-.+..- -....++. |+....+.-++..+.. ....+|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~~~--p~~~~ig~---D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN--PLCLIIGC---DLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC--Ccceeeec---chhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 348999999999642111 12233444 6666666556544432 56667899999999999999999999998753
Q ss_pred -CHHHHHHHHHhcccCCeEEEEEe
Q 006633 299 -ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 299 -d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+++|+.|+|||||...+..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 45679999999999999988864
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=74.01 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=78.8
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccc-cccCCCC-Cccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wc-e~~~~yp-~t~Dl~H~~~lfs 551 (637)
.+|||+|||.|.++.+|++. +- .+++.+|.++.++..+.++ |+- -++-.+ ..+..++ ..||+|-++--|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCCC
Confidence 47999999999999999875 22 2566667666677666543 441 111112 2334454 7899998865544
Q ss_pred cCC------CCc-----------------CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 552 LYK------DRC-----------------EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 552 ~~~------~~c-----------------~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
... ... ....++-++-|+|+|||.+++.........+++++++..+...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 211 000 0236778899999999999998766666778888877777544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=76.68 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..++|||||||+|.++..-++.| |.+++. .++..-..+.++.++.. +.+..+..+.+-+|-...|+|++-+.-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~--S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEA--SSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEec--hHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 35599999999999998888874 455554 35555555566666654 455555555555557789999996544
Q ss_pred ccCC-cCCHHHHHHHHHhcccCCeEEEE
Q 006633 293 IPWG-QYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 293 ~h~~-~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
.-+. +.-...+|..=.+.|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2111 11344556666799999998754
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.4e-05 Score=76.88 Aligned_cols=114 Identities=21% Similarity=0.154 Sum_probs=75.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC--------CCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--------TYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~--------~yp~t~Dl~H~~~ 548 (637)
..|.++|+|||.| +|+..+.-- --+|+.+|-++.||+++.+. -.-+||+=-.+++ -=+++-|||-|.-
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 4669999999999 777765542 35788999998999966544 4344543333333 2368999865410
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCc-EEEE---EeCHHHHHHHHHHHhcCCce
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEG-SVII---RDDVDILVKIKSITDGMEWE 598 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG-~~i~---~d~~~~~~~~~~~~~~~~W~ 598 (637)
- -|=|+++..+-++-|||||.| .+.+ +|+.-...++..+..+++|+
T Consensus 109 a----~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 A----VHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h----HHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 0 123899999999999999988 2222 44444555666666666664
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0002 Score=75.28 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=86.7
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchh-hccccccCCCC-Cccceeeecc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTY-QNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~-~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
.+|||+|||.|.++.+|+.. +- .+|+.+|.+...+.++.+. |+ +-.+ .||.+. .+ ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 57999999999999999864 21 2566777776788777664 43 2233 255543 34 3799987751
Q ss_pred -------------ccccCCCC---------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh-cCCceeEEeccC
Q 006633 549 -------------IFSLYKDR---------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITD-GMEWEGRIADHE 605 (637)
Q Consensus 549 -------------lfs~~~~~---------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~e 605 (637)
++...... -.+..++-+.-++|+|||++++--..+.-..+.++.. ...|..... ..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~ 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GR 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ec
Confidence 11100000 1345788899999999999999766666667777766 456743221 22
Q ss_pred CCCCCcceEEEEEec
Q 006633 606 NGPRQREKILFANKK 620 (637)
Q Consensus 606 ~~~~~~~~~l~~~K~ 620 (637)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2256888888753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=72.41 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=65.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----c---cchhh-ccccccCCC-CCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTY-PRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l---~~~~~-~wce~~~~y-p~t~Dl~H~~~ 548 (637)
...|||+|||.|.++..+.+..--.-.++.+|.+++.+..+.++- + +-+++ |.. .+. + +.+||+|.+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCC-CCCCCccEEEEec
Confidence 467999999999998888654200124555666656777666652 2 22222 211 111 3 37899998865
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++. +..+.+.+|-++.++|+|||.+++.+
T Consensus 130 ~l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 543 34567899999999999999999864
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=73.77 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=71.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccch----hhccccccCCCCCccceeeecccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGT----YQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~----~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
+..+|||+|||.|.++.+|++++. .|..+|.++.++..+.++.-... ..-.+..+...|.+||+|=+..++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 467999999999999999988754 56777888789988887642111 11112333344588999877666544
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+. ..++..++.++.|+++|++++.+...
T Consensus 132 ~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 32 34567899999999999888887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.6e-05 Score=70.06 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=63.2
Q ss_pred EeeecccchhhhhhhcCCC--eEEEEeccCCCCcchhHHHHhhccc-c-hhhccccccCCCC---CccceeeeccccccC
Q 006633 481 LLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYERGLI-G-TYQNWCEAMSTYP---RTYDLIHADSIFSLY 553 (637)
Q Consensus 481 vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eRgl~-~-~~~~wce~~~~yp---~t~Dl~H~~~lfs~~ 553 (637)
|||+|||.|....+|.+.- ---..+..+|.++.+|..+.++.-- + -.+--|..+...| .+||+|=+.+.+-.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999987641 1125777888888999999988831 1 1111123333333 799999997663333
Q ss_pred CCCcCHHHHHHHHhhcccCCc
Q 006633 554 KDRCEMEDVLLEMDRILRPEG 574 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG 574 (637)
-+.-.++.+|-++-++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 555678899999999999998
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=75.81 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=77.8
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~ 547 (637)
..+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ +-.++ |+ +...| ..||+|-++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEEC
Confidence 357999999999999999865 21 2566777777787777654 55 22232 33 23345 589998886
Q ss_pred ccccc------------CC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEecc
Q 006633 548 SIFSL------------YK---------DRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADH 604 (637)
Q Consensus 548 ~lfs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 604 (637)
-=+.. +. +.. ....++-++-++|+|||++++--..+. ..+++++....|....+++
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 21110 00 011 124788899999999999998654433 6788887766554444443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=76.72 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=71.7
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++..+..+.+. |+ +-+++ |+. ...| .+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~---~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF---AALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh---hhCCCCCccEEEECC
Confidence 57999999999999999764 32 4567778777788777654 44 33333 332 3334 6899998862
Q ss_pred cccc------------CC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcC
Q 006633 549 IFSL------------YK---------DRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGM 595 (637)
Q Consensus 549 lfs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~ 595 (637)
=+.. +. +.. ....++-+.-++|+|||.+++--..+ ...+.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1110 00 001 13478889999999999999953332 33566666544
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.1e-05 Score=74.03 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=74.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcc----hhHHHHhhcccchhhccccccCC--CCCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMST--YPRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~----~l~~~~eRgl~~~~~~wce~~~~--yp~t~Dl~H~~~lfs 551 (637)
.-.|||+|||.|--|-+|++++.=| ...|.+.. ...++-++||- ++-++..+.+ +|..||+|.+..+|-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~V---tAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDV---TAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EE---EEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeE---EEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec
Confidence 3489999999999999999998733 33444432 33444556773 3333333433 468999999877775
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE---e--------CHHHH---HHHHHHHhcCCceeEEe
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR---D--------DVDIL---VKIKSITDGMEWEGRIA 602 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d--------~~~~~---~~~~~~~~~~~W~~~~~ 602 (637)
..+ +-.++.++-.|-.-|+|||+++|- + +.+.+ ..+..... .|++..+
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 554 558899999999999999999883 1 12233 34555555 4998754
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=65.43 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hccc--chhh-ccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLI--GTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~--~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.++++. +- .+|+.+|.++.++..+.+ .|+- -+.. |.-+.+...+..||.|=+.+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 459999999999999999775 21 456666766666666532 2331 1111 100111122468998765332
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. ..++.++-++-|+|+|||++++.
T Consensus 98 ~------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 G------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred c------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 2 23468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00016 Score=74.75 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=84.3
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhh-ccccccCC-CCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-NWCEAMST-YPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~-~wce~~~~-yp~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.++-+|++. +- .+|+.+|.++..+..+.+. |+ .+++ |+.+.+.. +...||+|=+|==+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 347999999999999888653 21 2456667766777766543 32 2222 44333221 23579998776433
Q ss_pred cc-------------CCCCcC----------HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCC
Q 006633 551 SL-------------YKDRCE----------MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 607 (637)
Q Consensus 551 s~-------------~~~~c~----------~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 607 (637)
.. +..+.. +..++....++|+|||.+++--..+....+..+++...|+..+..|++-
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 21 111111 3477888889999999999976666778899999989999998888764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=79.65 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=72.8
Q ss_pred EEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.++|+|||.|....+++.. ++++++..+.............. .....+...+....||+++.||.+.+..+..|.+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~ 192 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAP 192 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCC
Confidence 7999999999888887765 45555544333332222211111 1123456678888999999999999999998888
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEE
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+...+++|+.|+++|||+++..
T Consensus 193 --~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 193 --DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --cHHHHHHHHhcccCCCceEEeH
Confidence 7999999999999999999986
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=73.18 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhh-cccchhhccccccCCC---CCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTY---PRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eR-gl~~~~~~wce~~~~y---p~t~Dl~H~~~ 548 (637)
-.+|||+|||.|+|..+|++. .|+.+-+.|.-.. +++.++.+| +++.+..|-+... .| +.++|+|=++-
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeC
Confidence 468999999999999999765 2566554432221 466766665 5555555544321 12 25789876543
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. + .=....+++|+.|+|||||+|+|.
T Consensus 211 a----~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 A----Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C----C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 1 112235667999999999999994
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00047 Score=69.40 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=77.5
Q ss_pred CEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEeccccccC
Q 006633 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP---SRAFDMAHCSRCLIPW 295 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp---d~sFDlV~~s~~L~h~ 295 (637)
-++|||||=+......-... .|+.+|+.+. ...+...|....|.| ++.||+|.++.+|..+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 58999999866543222111 4666666332 112345566666654 6789999999999776
Q ss_pred CcC-CHHHHHHHHHhcccCCeE-----EEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeeccc
Q 006633 296 GQY-ADGLYLIEVDRVLRPGGY-----WILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 362 (637)
Q Consensus 296 ~~~-d~~~~L~ei~RvLKPGG~-----Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~ 362 (637)
+.. ....++..+.+.|+|+|. |+++.|.. +.....+ ...+.+..+.+.+||..+..+
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--Cv~NSRy--------~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--CVTNSRY--------MTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch--Hhhcccc--------cCHHHHHHHHHhCCcEEEEEE
Confidence 632 556899999999999999 99987732 1111111 113457778899999887653
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00028 Score=70.90 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=67.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccccccCCCCCccceeeecccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
...+|||+|||.|.++.+|++... .|..+|.+++++..+.++- +-..++-....+...+.+||+|.+..+|..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 357999999999999999987754 3677787778888887652 211111111223333588999999877754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+. .-.+..++-++-|++++++.+.+..
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 43 2356788889999886666555443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=74.61 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=73.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-chhhccccccCCCCCccceeeeccccccCCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-GTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 555 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~ 555 (637)
+..++||+|||-|+.-+.|+.. .-+|..++.+..|.....+||.- =...+|-+. +..||+|-|-+|. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 6788999999999999999652 33466777887899999999992 122246532 4679999996666 7
Q ss_pred CcCHH-HHHHHHhhcccCCcEEEEE
Q 006633 556 RCEME-DVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 556 ~c~~~-~~l~e~dRiLrPgG~~i~~ 579 (637)
||+-+ .+|-+|-+.|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 89988 7888999999999999996
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.5e-05 Score=74.72 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=56.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
....|||+|||+|.+++.|++..=-.-.|+.+|..+..+..+.++ |+ +-+.+ |..+.+.. ...||+|++++.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCC
Confidence 356899999999999999876410001234445555666655443 54 22222 22222111 268999998432
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.+.+.-++-+.|+|||.+|+-
T Consensus 156 ---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 ---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------cccccHHHHHhcCcCcEEEEE
Confidence 344556678899999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00047 Score=64.73 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=66.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCch-HHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCe
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVAS-WGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAF 283 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~-~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp-d~sF 283 (637)
+.|.+.++.. .+.++||||||+|. ++..|++.|..++.+ |+++..++.+.+.+.. +...|...-.+. -..+
T Consensus 6 ~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~--~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 6 EFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLN--AFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCe--EEECcCCCCCHHHHhcC
Confidence 3344444333 34589999999995 888999888777666 7777788888877654 444454443322 3568
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|+|++.+ +-. +....+.++.+-+ |.-+++.
T Consensus 79 ~liysir---pp~--el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 79 KLIYSIR---PPR--DLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred CEEEEeC---CCH--HHHHHHHHHHHHc--CCCEEEE
Confidence 9999987 333 5666777777655 4555554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00023 Score=71.60 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=70.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccc------cCCC-CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA------MSTY-PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~------~~~y-p~t~Dl~H~~~lf 550 (637)
..+|||+|||+|+|...|+++.--.-.|+.+|..+ +.+. .|+.-+..|..+. ...+ +.+||+|-++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 45899999999999888866410001223333331 1110 1221111122211 0123 3789999886432
Q ss_pred ccCCCC--------cCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEE
Q 006633 551 SLYKDR--------CEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPRQREKILFA 617 (637)
Q Consensus 551 s~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 617 (637)
...... ...+.+|-|+-|+|+|||.|++..- .+.+..+++....... ..+...-....|..+||
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIVA 204 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEEe
Confidence 211111 1135789999999999999999532 2333333333333222 22333333457888888
Q ss_pred Ee
Q 006633 618 NK 619 (637)
Q Consensus 618 ~K 619 (637)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 53
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.4e-05 Score=73.20 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=72.5
Q ss_pred hhccCCCCCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-Cccceeee
Q 006633 469 DYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 469 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~ 546 (637)
..-+.+ .-.|||+|||.|.+-++|.+ ++|-+ ..++.....+....+||+-=+-+|.=+.+..|| .+||.+=.
T Consensus 8 ~~~I~p---gsrVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 8 AEWIEP---GSRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHcCC---CCEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 333555 57899999999999999987 56644 344555567899999999644458889999998 99998765
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+...... -..+.+|.||-|| |...|++
T Consensus 82 sqtLQ~~---~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 82 SQTLQAV---RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HhHHHhH---hHHHHHHHHHHHh---cCeEEEE
Confidence 3333222 2346899999666 6688887
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00058 Score=71.73 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CC-C----CCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-Y----PSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lp-f----pd~sFDl 285 (637)
.++|||||+|+|..+.+++.. .+++++..+.....+.. ...+.|. .+.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~-n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKR-YYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 349999999999999999874 24556664422222222 2223344 36666666533 22 1 2368999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+.-. ... +...+++.+.++|+|||.+++..
T Consensus 198 VFIDa----~K~-~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA----DKR-MYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC----CHH-HHHHHHHHHHHhcCCCcEEEEec
Confidence 99743 333 56778999999999999999873
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00036 Score=76.98 Aligned_cols=138 Identities=10% Similarity=0.141 Sum_probs=88.3
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCCCccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
.+|||+|||+|.++.+|+.. +- .+|..+|.++.+++.+.+. |+ +.+++ ||.+...+-...||+|-+|-=+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 37999999999999888753 32 3566777777888877664 32 23333 54432111125799988854321
Q ss_pred cC---------------------CCCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCCCC
Q 006633 552 LY---------------------KDRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 609 (637)
Q Consensus 552 ~~---------------------~~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 609 (637)
.. .+.- .+..++-+.-+.|+|||++++--..+....+++++++..|.....-.+ -.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l~ 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--LA 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--CC
Confidence 00 0110 123677777899999999998666677788999888888865422211 12
Q ss_pred CcceEEEEEec
Q 006633 610 QREKILFANKK 620 (637)
Q Consensus 610 ~~~~~l~~~K~ 620 (637)
+.++++++++.
T Consensus 409 G~dR~v~~~~~ 419 (423)
T PRK14966 409 GLDRVTLGKYM 419 (423)
T ss_pred CCcEEEEEEEh
Confidence 56889988763
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=72.77 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=61.0
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCCc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRC 557 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c 557 (637)
.+|||+|||.|.+..+|.+..- .++..+|.++.++..+.++|+--+..|..+.+..++ ++||+|-+++.|....
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 4799999999999999975421 134555666678888888876222223333344465 8999999988776443
Q ss_pred CHHHHHHHHhhcccC
Q 006633 558 EMEDVLLEMDRILRP 572 (637)
Q Consensus 558 ~~~~~l~e~dRiLrP 572 (637)
+...+|-||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 457888888777654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00098 Score=65.76 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+++|+|+|||||.++...+-. .|.++++++..+ +...+.+.+.+..+.+...|..+.. ..||.++.+.-+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 4558999999999887766655 477787766322 2333344444457888888877754 55899998875532
Q ss_pred CCcCCHHHHHHHHHhc
Q 006633 295 WGQYADGLYLIEVDRV 310 (637)
Q Consensus 295 ~~~~d~~~~L~ei~Rv 310 (637)
+....+..++....++
T Consensus 121 ~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 121 QRRHADRPFLLKALEI 136 (198)
T ss_pred ccccCCHHHHHHHHHh
Confidence 2221233344444444
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.002 Score=63.89 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=69.9
Q ss_pred eecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC
Q 006633 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 188 ~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
+..|.+....|.. +...+.+..++... -.+.++||++||+|.++..++.++ ++.++.++..+.... +.+...+.
T Consensus 21 l~~p~~~~~rpt~-~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~ 97 (189)
T TIGR00095 21 LKLPPGGSTRPTT-RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKS 97 (189)
T ss_pred cCCCCCCCCCCch-HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCC
Confidence 3344443333332 33334455554311 123489999999999999999985 445555432222111 11222233
Q ss_pred --CeEEEEecccc-CC-C-CC-CCeeEEEeccccccCCcCCHHHHHHHHH--hcccCCeEEEEEeC
Q 006633 265 --PALIGVMASIR-LP-Y-PS-RAFDMAHCSRCLIPWGQYADGLYLIEVD--RVLRPGGYWILSGP 322 (637)
Q Consensus 265 --~~~~~~~d~~~-Lp-f-pd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~--RvLKPGG~Lvls~p 322 (637)
.+.+...|... +. + .. ..||+|+.-.-+ .......++..+. .+|+++|.+++..+
T Consensus 98 ~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy---~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 98 GEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF---FNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cccEEEEehhHHHHHHHhhccCCCceEEEECcCC---CCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 35667777633 22 1 12 247888876633 2213445555553 47999999888754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00063 Score=68.44 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=63.2
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CC-----CCCCCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-----YPSRAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lp-----fpd~sFDlV 286 (637)
++|||||+++|.-+.+|++. .++++++++.... ...+...+.+. .+.+..+++.. ++ .+.+.||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 48999999999999999975 3555555442221 11122223343 46777776543 22 124689999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.-. ... +...++..+.++|+|||.+++..
T Consensus 126 FiDa----~K~-~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDA----DKR-NYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEES----TGG-GHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcc----ccc-chhhHHHHHhhhccCCeEEEEcc
Confidence 9743 333 66778999999999999999984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=65.78 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH----cCCC--eEEEE-eccccC-C-CCCCCee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE----RGVP--ALIGV-MASIRL-P-YPSRAFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~~-~d~~~L-p-fpd~sFD 284 (637)
.++|||||.+.|.-+.+|+.. .++++++++ .+.+.|++ .++. +.+.. +++.+. . ...++||
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~-----e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDE-----ERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH-----HHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 448999999999999999875 255565544 44444443 2432 33444 243221 1 4568999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.- +... +...++..+.++|||||.+++..
T Consensus 135 liFID----adK~-~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 135 LVFID----ADKA-DYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEEEe----CChh-hCHHHHHHHHHHhCCCcEEEEee
Confidence 99863 4444 67789999999999999999973
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00053 Score=68.51 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHhc--ccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------------CCCe
Q 006633 208 IGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------------GVPA 266 (637)
Q Consensus 208 L~~lL~--~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------------g~~~ 266 (637)
+.++|. +.+|. ++||+|.|+|.++..++.. +...+++ +..+..++.+.++ ....
T Consensus 72 ~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI---Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 72 ALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGI---EHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccch---hhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 334444 44544 8999999999988877643 4433444 5555555544432 1235
Q ss_pred EEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 267 ~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+.++|....--+...||.||+... .....+++...|+|||.+++-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 6677777776667788999999753 334557888889999999885
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00052 Score=72.25 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=98.8
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccch
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGT 526 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~ 526 (637)
...||..+...+. ..+ ..... +|||||||+|--|.+|++..- ..+|+.+|-++.-+.++.+ .|+.-+
T Consensus 92 Pr~dTe~Lve~~l---~~~---~~~~~--~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAAL---ALL---LQLDK--RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHH---Hhh---hhcCC--cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 4677888877765 111 12022 999999999999999987622 1577888887766666533 354221
Q ss_pred hhccccccCCCCCccceeeecc----------------------ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH
Q 006633 527 YQNWCEAMSTYPRTYDLIHADS----------------------IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI 584 (637)
Q Consensus 527 ~~~wce~~~~yp~t~Dl~H~~~----------------------lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~ 584 (637)
+.--+.-|+..+..||+|-+|= ||+.....-.+..++-+..++|+|||++++.-..+.
T Consensus 163 ~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 163 LVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred EEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 1111133555555788765421 222211111234788899999999999999888777
Q ss_pred HHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 585 LVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 585 ~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
...|+++.....+ ...+.....-.+.+.+.++++
T Consensus 243 ~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 243 GEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 8889999888885 322222223334666666654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=65.86 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC---Cccceeeeccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP---RTYDLIHADSIFS 551 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp---~t~Dl~H~~~lfs 551 (637)
...-.|=|||||-|-.|+++.+. .|.-.-+++.... ++. |.- ..-| .+.|++-+ .
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-----------Vta-----cdi-a~vPL~~~svDv~Vf----c 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-----------VTA-----CDI-ANVPLEDESVDVAVF----C 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-----------EEE-----S-T-TS-S--TT-EEEEEE----E
T ss_pred CCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-----------EEE-----ecC-ccCcCCCCceeEEEE----E
Confidence 34568999999999999887643 4666666664332 111 211 2233 78887542 2
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEecC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKY 621 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~~ 621 (637)
+.-=.-+..+.+.|..|||||||.++|.+-.. .++...+.++++..+....|..+ +--.++..+|.-
T Consensus 130 LSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~f~F~K~~ 199 (219)
T PF05148_consen 130 LSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVLFEFKKIR 199 (219)
T ss_dssp S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEEEEEEE-S
T ss_pred hhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEEEEEEEcC
Confidence 22223577899999999999999999986544 33445566888888888766543 345667777765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00024 Score=75.22 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=63.5
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHH----hhcccchhhccccccC--CCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMS--TYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl~~~~~~wce~~~--~yp~t~Dl~H~~~ 548 (637)
...+.|||+|||.|.++.++.++ |- .+++..|.+ .++..+. +.|+-.-++-.+..|. .+|. +|++-..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEh
Confidence 45789999999999999988765 32 133333443 5665543 3465332222223332 3554 79865555
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
++-.+.. -....+|-++-|.|||||.++|-|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4433322 1335789999999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00061 Score=76.22 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCEEEEECCCCchHHHHHhhc--------CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
...|||||||+|.+....++. .|.+++-.+......+ +....++ ..+.+...+.+....|. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 358999999999887655543 3455554332221111 2223333 35888888888887664 7999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
-..-.-...+-....|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 443211122244567889999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00049 Score=72.92 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~~Lpfp 279 (637)
..++.+.+.+...++. +|||||||+|.++..|++++ ++++++++..+.....+++... ..++.+...|+...+++
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3556677766655544 89999999999999999874 5666664433332222222111 23577888887666553
Q ss_pred CCCeeEEEeccccccCC
Q 006633 280 SRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~ 296 (637)
.||.|+++.-+ ++.
T Consensus 101 --~~d~VvaNlPY-~Is 114 (294)
T PTZ00338 101 --YFDVCVANVPY-QIS 114 (294)
T ss_pred --ccCEEEecCCc-ccC
Confidence 68999987644 444
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00045 Score=69.33 Aligned_cols=147 Identities=15% Similarity=0.258 Sum_probs=109.3
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-----cchhhccccccCCCCCc
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMSTYPRT 540 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~~wce~~~~yp~t 540 (637)
.++..+.. .+.++|.|+|||.|.--+.|+.+ |. --+..+|++..||..+.+|.. .|.+++||-. +.
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~ 92 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QP 92 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cc
Confidence 34444555 67999999999999988888887 33 336788999999999999987 5778888832 56
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHH--HHHHHHHHHhcCCceeEEeccC--CCCC-----
Q 006633 541 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVD--ILVKIKSITDGMEWEGRIADHE--NGPR----- 609 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~--~~~~~~~~~~~~~W~~~~~~~e--~~~~----- 609 (637)
.|||-++-+|--..+. ..+|-.+=--|+|||.+-+. |+.+ ...-|.+.++..-|...+-+.- -.+.
T Consensus 93 ~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 93 TDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred cchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 8999999999877766 67777777789999999987 4433 6678888999888887654311 0010
Q ss_pred -------CcceEEEEEecCCCC
Q 006633 610 -------QREKILFANKKYWTA 624 (637)
Q Consensus 610 -------~~~~~l~~~K~~w~~ 624 (637)
...+|=||.+.|-..
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHHhCcccceeeeeeeecccc
Confidence 136777888877665
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00029 Score=70.47 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=56.0
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHh----hccc---chhh-ccccccCCCCCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYE----RGLI---GTYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----Rgl~---~~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
...|||+|||+|.+++.|.+. +- .|+.+|..++++..+.+ .|+- -+++ |..+.+. -...||.|.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~ 148 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIV 148 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEE
Confidence 568999999999999887643 11 24444555556555443 3542 2222 2222221 1268999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.+. .+.-|+-|+|+|||.+++-.
T Consensus 149 ~~~~~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAAS---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcc---------hhhHHHHHhcCcCcEEEEEE
Confidence 65432 33347789999999999853
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00038 Score=69.71 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=58.6
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H~~ 547 (637)
....+|||+|||+|.+++.|.+..- .|..+|..++.+..+.++ |+ +-+.+ ...+..+| ..||+|.++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEc
Confidence 3357899999999999987766421 345556555676666554 44 22222 12234444 689999885
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
..+ +.+.-++-+.|+|||.+++.
T Consensus 152 ~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 152 AAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 432 34455677899999999985
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.015 Score=61.43 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=75.3
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH----Hhhcccc--hhhccccccCCCCCccceeeeccccccC
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI----YERGLIG--TYQNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~eRgl~~--~~~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
+|+|+|||+|=.|+.|++..= ...+.-+|.+..-++.+ .+-++-+ +++ .--++.-...||+|=+|==|-..
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~--s~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWA--SNLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEE--ecccccccccccEEEeCCCccCC
Confidence 999999999999999987631 11222233321222221 1123322 232 12334444699998877666643
Q ss_pred CCC--cCHHHHHHHHhhcccCCcEEEEEeC--HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 554 KDR--CEMEDVLLEMDRILRPEGSVIIRDD--VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 554 ~~~--c~~~~~l~e~dRiLrPgG~~i~~d~--~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
+.- --.+.++.+--+-|++||-++|=-+ ..+-.+|+++.. ++...... ++-+||=++|
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k 299 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKK 299 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEec
Confidence 322 1123788888999999999988543 345666666665 44443322 3566776666
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=63.65 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=66.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CC-----------EEEEcCccccHHHHHHHHHHcCC--CeEE
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NI-----------LAVSFAPRDTHEAQVQFALERGV--PALI 268 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v-----------~~vdisp~Dls~a~i~~A~erg~--~~~~ 268 (637)
....+..+....++. .+||--||+|++..+.+.. ++ .+.|+++..+..+..+ +...+. .+.+
T Consensus 16 lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~ 92 (179)
T PF01170_consen 16 LAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEE
T ss_pred HHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEE
Confidence 334455555555544 8999999999998665433 33 3677766554433333 223343 3678
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcC---------CHHHHHHHHHhcccCCeEEEEE
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQY---------ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~---------d~~~~L~ei~RvLKPGG~Lvls 320 (637)
...|+..+++.++++|.|+++. +|... -...+++++.|+|++...+++.
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 8889999998889999999976 33321 1125688999999995555554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.002 Score=68.19 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=77.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc---cc-hhhccccccCCCC--Cccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYP--RTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~-~~~~wce~~~~yp--~t~Dl~H~~~lf 550 (637)
+.++|||+|||.|-+|-|.++.+. --|+.+|..+-.++++.|--. +. +.+.=+-..+..| +.||+|-||=|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 389999999999999988888765 345666766667777766322 11 1111111123344 58999987211
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccC
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
. --+..+.=++-|.|||||++|++-= .+..+.|.+.+.+-.|++.-+...
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 0 0011344455799999999999953 345677888887778877655444
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0026 Score=69.88 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=62.8
Q ss_pred CEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+|||++||+|.++..++.. + |+++|+++..+..... .+..+++. ..+...|+..+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 38999999999999998764 4 5666665433332222 22223333 4466666654322145799999854
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+. ....++..+.+.+++||.+.++.
T Consensus 134 ~G--s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 FG--SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC--CcHHHHHHHHHHhcCCCEEEEEe
Confidence 23 45678888788899999999984
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00071 Score=71.69 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=70.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH----hhcccchhhccccccCCCC-Cccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|-.|-+-++.+- -.|+.+|..+..+..+. .-|+-.-+. . ......+ ..||+|-||=+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v-~~~~~~~~~~~dlvvANI~~~- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-V-SLSEDLVEGKFDLVVANILAD- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-E-SCTSCTCCS-EEEEEEES-HH-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-E-EEecccccccCCEEEECCCHH-
Confidence 45999999999976544444332 12344444434444443 334422111 1 1122344 8899998832222
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
-+..++-++.+.|+|||++|++-- .+....|.+.++. .|++.....+ +.-..|+++|+
T Consensus 237 -----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 -----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp -----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred -----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 122455567899999999999842 2345666666666 7776544433 24567778775
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00033 Score=69.67 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred cCCCCCCCcccHHHHHHHHHHHh-cccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCe
Q 006633 190 FPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPA 266 (637)
Q Consensus 190 Fpg~g~~f~~g~~~~i~~L~~lL-~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~ 266 (637)
|.|.|.||--..+.+.+ +...- +..+....++||+|+|.|..+..++.. .|.+. +++..|...-.+.+-++
T Consensus 84 ~lgrGsMFifSe~QF~k-lL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyAT-----ElS~tMr~rL~kk~ynV 157 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRK-LLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYAT-----ELSWTMRDRLKKKNYNV 157 (288)
T ss_pred ccccCceEEecHHHHHH-HHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHH-----HhhHHHHHHHhhcCCce
Confidence 67778887555544432 22121 122234568999999999999888765 33333 55666766555554332
Q ss_pred EEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccC-CeEEEEE
Q 006633 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRP-GGYWILS 320 (637)
Q Consensus 267 ~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKP-GG~Lvls 320 (637)
. . .....-.+-.||+|.|-..+..-. ++..+|+++..+|+| .|..+++
T Consensus 158 l-~---~~ew~~t~~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 158 L-T---EIEWLQTDVKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred e-e---ehhhhhcCceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 2 1 112211234599999988774444 789999999999999 8888776
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=68.20 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=80.4
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh-cccc------hhh-ccccccCCCCCccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER-GLIG------TYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR-gl~~------~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
...++|||+|||.|.++.+|.+. |- +.+.-+|..+..+.++.+. ++.+ +.+ |.-+-+...|.+||+|=+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999988654 32 3445556655788887765 2221 111 211223445678999977
Q ss_pred ccccccC--CCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 547 DSIFSLY--KDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 547 ~~lfs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
+ .|... ........++.++-++|+|||.+++- .+......++.+.+.+.-.+.+...+. ....|+++.|
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 5 34321 11122368999999999999999983 222222223333333332333333221 1346888876
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00041 Score=67.35 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=69.6
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
-.+|||+|||+|-.|.+|+++ +- ..|..+|.++..+..+.+ .++-.+.-.++..+...+ ..||+|=++-=|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~--~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD--AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC--EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 567999999999999999775 22 125555666667766644 333111112334444454 9999988865543
Q ss_pred cCCC--CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHh
Q 006633 552 LYKD--RCEMEDVLLEMDRILRPEGSVII--RDDVDILVKIKSITD 593 (637)
Q Consensus 552 ~~~~--~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~ 593 (637)
.... ...+..++.+.-++|+|||.+++ +.....-..++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2221 12356888999999999998854 433434444555554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=66.28 Aligned_cols=121 Identities=18% Similarity=0.286 Sum_probs=84.0
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc--------cchhh-ccccccCCCC-Cccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL--------IGTYQ-NWCEAMSTYP-RTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl--------~~~~~-~wce~~~~yp-~t~Dl~H 545 (637)
....|||+|||.|..+-+|+++ += .-++.++-.+.+..++ .|.+ |-++| |.-+-....+ .+||+|=
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A-~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMA-QRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHH-HHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3889999999999988888877 31 1233334442333332 2222 44444 2111112223 4699988
Q ss_pred eccccc---------------cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 546 ADSIFS---------------LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 546 ~~~lfs---------------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
|+==|= .+...|++++++-=.-++|+|||++.+=-+.+.+..|.+++++++|..+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 764432 3445689999999999999999999999999999999999999999987
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=70.06 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAF 283 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sF 283 (637)
..++||.||+|.|..+.++++. .++++++ ++..++.|++. ...+.+...|... +.-.+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEi-----D~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDI-----DQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEEC-----CHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 3568999999999999988875 3455655 44555555543 2346666666543 23345789
Q ss_pred eEEEeccccccCCcC-----CHHHHHH-HHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQY-----ADGLYLI-EVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~-----d~~~~L~-ei~RvLKPGG~Lvls~ 321 (637)
|+|++-. ..++... ....+++ .+.+.|+|||.+++..
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999852 2222100 1345677 8999999999998753
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00069 Score=68.49 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=60.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH-Hhhcccch--------------hhccccccCCCC----
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIGT--------------YQNWCEAMSTYP---- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgl~~~--------------~~~wce~~~~yp---- 538 (637)
-.+|||+|||.|-.|.+|++++. +|+.+|.++..+..+ .+.|+-.. +.-+|..+..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 46999999999999999999865 556666665556553 34454211 111343343333
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.+||+|=..++|-.. .....+.++-.|-|.|||||++++
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 346654433333211 334457899999999999997444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00045 Score=73.31 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=66.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh---ccc-----chhhccccccCCCCCcc----c-ee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLI-----GTYQNWCEAMSTYPRTY----D-LI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl~-----~~~~~wce~~~~yp~t~----D-l~ 544 (637)
..+|||+|||+|.++..|++.-.=..+++++|.+..+|..+.++ ... ++..|.++.+ .+|..+ + ++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEE
Confidence 45799999999999998876611024689999999999998876 221 2222333322 233333 2 34
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.+...|.... .-+...+|-++-+.|+|||.++|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4434444432 334568999999999999999985
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0059 Score=59.92 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=66.4
Q ss_pred CCEEEEECCCCchHHHHHhhc---CC--EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v--~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
...+||||||+|..+..|++. ++ .++|+.|... ++..+-|+.++..+.....|...- +..++.|+++.+.-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 458999999999999999887 33 4455544221 223344555566666665554332 2238999999987654
Q ss_pred cCCcC---------------C----HHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQY---------------A----DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~---------------d----~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+-.++ + .++++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 43322 1 23567777888999999999864
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=62.58 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=56.8
Q ss_pred HHHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhcC-----CEEEEcCccccHHHHHHHHHHcCCCeEEEEec------
Q 006633 205 IDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERGVPALIGVMA------ 272 (637)
Q Consensus 205 i~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~~-----v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d------ 272 (637)
+.++.+..+ ...+...++||+||++|.|+..+++++ +.++|+.+.+.. ..+.+..+|
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhH
Confidence 344555555 444456799999999999999999885 455666443111 111111111
Q ss_pred cccCC--C--CCCCeeEEEeccccccCCcC---C-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLP--Y--PSRAFDMAHCSRCLIPWGQY---A-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lp--f--pd~sFDlV~~s~~L~h~~~~---d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+. + ....||+|+|-.+. ..... + ....+.-+...|||||.|++-..
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred HHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11111 1 12689999995532 11110 1 11234455677999999998754
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00077 Score=68.38 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=65.0
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHH-HHhhcccch--------------hhccccccCCC---C-C
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV-IYERGLIGT--------------YQNWCEAMSTY---P-R 539 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~-~~eRgl~~~--------------~~~wce~~~~y---p-~ 539 (637)
.+|||.|||.|--|.+|++++. +|+.+|.++.-++. +.++|+-.. ++-++..+..+ + .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 5899999999999999999976 56777777666664 356777422 11133433333 2 3
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
+||+|--.++|... .....+.++-.|.++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 67776654544433 233457899999999999996444
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0072 Score=63.43 Aligned_cols=197 Identities=21% Similarity=0.322 Sum_probs=109.8
Q ss_pred CCCCCCCCCcccccccccCCCCchhhhhhh-hcceEeecCCeeecCCCCCCCcccHHHHH----HHHHHHhc-c-cCCCC
Q 006633 147 GYTVPFRWPESRQFAWYANVPHKELTVEKK-NQNWVRFQGDRFSFPGGGTMFPRGADAYI----DDIGKLIN-L-KDGSI 219 (637)
Q Consensus 147 ~Y~~P~pwP~Srd~~wy~n~p~~~L~~~k~-~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i----~~L~~lL~-~-~~g~~ 219 (637)
|+...|--=.+.|++ |.|.|.......+. .++|.+.-| + .|.+... +.|.+.+. + ..+..
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr~yLnaiG----W--------rGIR~Rk~~l~~~i~~ai~~L~~~g~p 136 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDRNYLNAIG----W--------RGIRQRKVHLEELIRQAIARLREQGRP 136 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHHHHHhhhcccc----h--------HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 455555554556655 67888766544432 333333211 1 1111111 12222222 1 23445
Q ss_pred CEEEEECCCCchHHHHHhhc------CCEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccC---CCCCCCeeEEEe
Q 006633 220 RTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRL---PYPSRAFDMAHC 288 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~L---pfpd~sFDlV~~ 288 (637)
-+||||.||.|......+.. .+...|+++..+...+ +.+.++|.. +.|...|+... .--+-..|+++.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 68999999999876665544 3455566554443332 344566654 37877775432 111334699999
Q ss_pred ccccccCCcCC-HHHHHHHHHhcccCCeEEEEEeCCCCccc---------c--ccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 289 SRCLIPWGQYA-DGLYLIEVDRVLRPGGYWILSGPPVNWES---------H--WKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 289 s~~L~h~~~~d-~~~~L~ei~RvLKPGG~Lvls~pp~~w~~---------~--~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
+..++-+++.+ ....+.-+.+.|.|||+++.++-|.+-.. | ..+|--- ...+.++..+.+..+|
T Consensus 216 sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 216 SGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEAAGF 291 (311)
T ss_pred ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHHcCC
Confidence 99887776422 34578899999999999999974322110 0 0123211 1234567778888888
Q ss_pred eeecc
Q 006633 357 KKLIQ 361 (637)
Q Consensus 357 ~~v~~ 361 (637)
+++.+
T Consensus 292 ~K~~q 296 (311)
T PF12147_consen 292 EKIDQ 296 (311)
T ss_pred chhhh
Confidence 76653
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0038 Score=69.38 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=77.1
Q ss_pred EEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
++|-+|||.-.+...+.+- .++.+|+++..+...+...+ .......+...+...+.|++.+||+|+--..+.++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888876 46667666655554444444 2223577888899999999999999999888877765
Q ss_pred CC--------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 298 YA--------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 298 ~d--------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++ ....+.++.|+|+|||.++...-
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 32 22457999999999999887643
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=66.07 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=60.5
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHH----HcCC--CeEEEEecccc-CC-C-----CCC
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIR-LP-Y-----PSR 281 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~----erg~--~~~~~~~d~~~-Lp-f-----pd~ 281 (637)
++|||||+++|.-+.+|+.. .+++++..+ ...+.|+ +.|. .+.+..+++.. |+ + ..+
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~-----~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINR-----ENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH-----HHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 48999999999998888864 355555543 2333332 2342 36666665433 22 1 136
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+||+|+.- +... ....+++.+.+.|+|||.+++.
T Consensus 156 ~fD~iFiD----adK~-~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 156 TFDFIFVD----ADKD-NYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cccEEEec----CCHH-HhHHHHHHHHHhcCCCeEEEEc
Confidence 89999974 3333 5567888889999999999886
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=63.32 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=71.3
Q ss_pred eecCCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhh--cC--CEEEEcCccccHHHHHH
Q 006633 182 RFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RN--ILAVSFAPRDTHEAQVQ 257 (637)
Q Consensus 182 ~~~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~--~~--v~~vdisp~Dls~a~i~ 257 (637)
...|-.|.+.-...+|..+...--.++.+.+ .++ .+|||+.||.|.|+..+++ +. |.++|+.|.... .+.+
T Consensus 69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~-~L~~ 143 (200)
T PF02475_consen 69 KENGIRFKVDLSKVYFSPRLSTERRRIANLV--KPG--EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE-YLKE 143 (200)
T ss_dssp EETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH-HHHH
T ss_pred EeCCEEEEEccceEEEccccHHHHHHHHhcC--Ccc--eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH-HHHH
Confidence 3344445544455666666554445566553 333 4999999999999999998 43 566666553222 3333
Q ss_pred HHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 258 FALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 258 ~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
.++.+++. +....+|...+.- .+.||-|++.. +. ....+|..+.+++|+||.+-
T Consensus 144 Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~-~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 144 NIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PE-SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TS-SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hH-HHHHHHHHHHHHhcCCcEEE
Confidence 34444443 5667788777654 78999888754 22 34468899999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00082 Score=67.06 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=72.9
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcc----hhHHHHhhcccchhhccccccC---C-C-CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMS---T-Y-PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~----~l~~~~eRgl~~~~~~wce~~~---~-y-p~t~Dl~H~~ 547 (637)
-..+||+|||.|.|..+|+.. |= .|++.++...+ .+..+..+||--+.--.|.+.. . + |.+.|.||.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-
Confidence 349999999999999999653 21 25555555433 3445556666222222223322 2 2 489998887
Q ss_pred ccccc------CCCCcCH-HHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC--CceeE
Q 006633 548 SIFSL------YKDRCEM-EDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM--EWEGR 600 (637)
Q Consensus 548 ~lfs~------~~~~c~~-~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~--~W~~~ 600 (637)
.|.. ...|..+ +.+|-++-|+|+|||.+.+ ||..++...+.+.+... .++..
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 5551 1123233 5888999999999999998 57777888888876664 44443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=70.37 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=70.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCC---CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY---PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~y---p~t~Dl~H~~~lf 550 (637)
...|||.+||+|++...+...+ .+|...|....++..+.+. |+-. ++--+..+... +.+||+|-++-=|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 5589999999999965554433 2456667776677654432 4432 11112222222 3789999886433
Q ss_pred cc---CCC---CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCc
Q 006633 551 SL---YKD---RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 597 (637)
Q Consensus 551 s~---~~~---~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W 597 (637)
.. ... ......+|-|+-|+|+|||++++--..+ ..++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 32 111 1335789999999999999988764332 144456677777
|
This family is found exclusively in the Archaea. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0025 Score=67.32 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=70.9
Q ss_pred CCceeEeeecccchhhhhhhcCCCe-EEEEeccCCCCcchhHHHHhhcccchh---hcc--c-cccCCCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVIYERGLIGTY---QNW--C-EAMSTYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~eRgl~~~~---~~w--c-e~~~~yp~t~Dl~H~~~ 548 (637)
=+.|.|||+|||-|-+...|+..+- .|+-+=|.... .+|+-+-+-++|.- |-. . |.++. ..+||+|=|-|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee
Confidence 4578999999999999999988765 55666665443 56666666666521 110 1 33444 58999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|+= + |-+--+.|.++-..|||||-+|+-
T Consensus 191 VLY--H-rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 191 VLY--H-RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ehh--c-cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 875 3 445578899999999999999973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0027 Score=61.85 Aligned_cols=132 Identities=17% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCceeEeeecccchhhhhhhcCCC-----eEEEEeccCCCCcchhHHHHhhcccchhhccc-----cccCCC-C---Ccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-----LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC-----EAMSTY-P---RTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-----v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wc-----e~~~~y-p---~t~ 541 (637)
+...+|||+||+.|||..++.++. |+.+-+.|.+.. +++..+-.|-. +.+... + +.|
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---------QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---------cceeeeecccchhhHHHhhhhhccccccCc
Confidence 678999999999999999999886 344444444211 22211111111 112222 2 589
Q ss_pred ceeeeccccccCCCC---c--CHHHH---HHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCceeEEeccCCCC
Q 006633 542 DLIHADSIFSLYKDR---C--EMEDV---LLEMDRILRPEGSVIIR-----DDVDILVKIKSITDGMEWEGRIADHENGP 608 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~---c--~~~~~---l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~ 608 (637)
|+|-||+-+.....+ . .+..+ |.=+-..|||||.+|+. +..+.+..++...+...+-. -.-.++
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~K---p~~sr~ 169 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVK---PPSSRS 169 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE----TTSBT
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEE---CcCCCC
Confidence 999999966543321 1 11122 22234679999999885 22356666666655543322 223444
Q ss_pred CCcceEEEEEe
Q 006633 609 RQREKILFANK 619 (637)
Q Consensus 609 ~~~~~~l~~~K 619 (637)
...|.-|||++
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 56788888864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0021 Score=66.72 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=65.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHh-hc--CCEEEEcCccccHHHH--------------HHH-HHHcCC-
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLM-SR--NILAVSFAPRDTHEAQ--------------VQF-ALERGV- 264 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La-~~--~v~~vdisp~Dls~a~--------------i~~-A~erg~- 264 (637)
.++.+.+.+......+.++||||||.-..-..-+ +. .++..|+.+....+-+ .+. +.-.|.
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 3444555555444456799999999864432222 22 5777777663332111 111 110110
Q ss_pred -------------CeEEEEeccccC-CCCC-----CCeeEEEeccccccCCcCCHH---HHHHHHHhcccCCeEEEEEe
Q 006633 265 -------------PALIGVMASIRL-PYPS-----RAFDMAHCSRCLIPWGQYADG---LYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 265 -------------~~~~~~~d~~~L-pfpd-----~sFDlV~~s~~L~h~~~~d~~---~~L~ei~RvLKPGG~Lvls~ 321 (637)
--.+...|.... |+.. ..||+|++++|++-... +.+ .+++++.++|||||+|++.+
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~-d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACK-DLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-S-SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 012344454443 3332 35999999999977665 444 67999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0024 Score=67.67 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhh---------c--CCEEEEcCccccHHHHHHHHHHcCC---CeE
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS---------R--NILAVSFAPRDTHEAQVQFALERGV---PAL 267 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~---------~--~v~~vdisp~Dls~a~i~~A~erg~---~~~ 267 (637)
....+.+.+++....+. +|||..||+|.|...+.+ . .+.++++.+....-+.+.... ++. ...
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 55667777777554443 899999999999877765 2 345555543322222222222 222 123
Q ss_pred EEEeccccCCCC--CCCeeEEEeccccccC--CcC-----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 268 IGVMASIRLPYP--SRAFDMAHCSRCLIPW--GQY-----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 268 ~~~~d~~~Lpfp--d~sFDlV~~s~~L~h~--~~~-----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...|....+.. ...||+|+++.-+... ... ..-.++..+.+.|++||.+++..|
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 555565444332 4789999997544222 100 112578889999999999988876
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00034 Score=62.63 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=62.4
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
-+|||+|||.|.|..++.+.. ..++..+|-.+..+.++..+ |+ +.+++ |+-+....++ ..||+|=++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999999998775 45666666664444444331 11 22222 2222222344 88999999888
Q ss_pred cccCC-----CCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYK-----DRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|.... .+-....++.++.|+|||||.+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 87431 1124468889999999999999873
|
... |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.004 Score=62.80 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccc--hhhccccccCCCCCccceeeeccccc--
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIG--TYQNWCEAMSTYPRTYDLIHADSIFS-- 551 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~--~~~~wce~~~~yp~t~Dl~H~~~lfs-- 551 (637)
+.-+-|||+|||+|--|+.|.+.+- -.+.+|.+..||.++.||-+=| ++.|..|.+++=|.|||-+-..+-..
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 5789999999999999999988863 1345677779999999977765 33488899998899999532211110
Q ss_pred -cCCCCcCHH-----HHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCcee-EEeccCCCCCCcceEEEE
Q 006633 552 -LYKDRCEME-----DVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 617 (637)
Q Consensus 552 -~~~~~c~~~-----~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 617 (637)
.-...|..+ .++--+-..|.+|+..++. .+.+.++.|...+..--..- .++|.-.+..++-..||.
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 011223323 4456688999999999998 45555666655543322221 233443233344455555
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0092 Score=58.95 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=87.9
Q ss_pred cCcchhcchhh--HHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhc-CCCeEEEEeccCCCCcchhHHH--
Q 006633 444 DGVTAEMFRED--TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV-DDPLWVMNTVPVEAKINTLGVI-- 518 (637)
Q Consensus 444 ~g~~~~~f~~d--~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~-~~~v~~mnv~~~~~~~~~l~~~-- 518 (637)
+|+..+.|..| ...-|+-|+- -.+..|.. .....++|+|||+|+.+-.++ -.|. .-|..++..+..+..+
T Consensus 2 ~gipD~~F~~~~~~p~TK~EIRa--l~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 2 PGIPDELFERDEGGPMTKEEIRA--LTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIER 76 (187)
T ss_pred CCCCchhhccCCCCCCcHHHHHH--HHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHH
Confidence 34556667666 2223444431 11333444 556799999999999886665 1222 3445555543333322
Q ss_pred -Hhh-cc--cchhhccc-cccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHH
Q 006633 519 -YER-GL--IGTYQNWC-EAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSIT 592 (637)
Q Consensus 519 -~eR-gl--~~~~~~wc-e~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~ 592 (637)
.+| |+ +-++..+. +.++..| +||.|-. .. . -.++.||-....-|||||.+|.. -+.+.+.++-+..
T Consensus 77 N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI-----GG-g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~ 148 (187)
T COG2242 77 NAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI-----GG-G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEAL 148 (187)
T ss_pred HHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE-----CC-C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHH
Confidence 222 22 11222222 4555556 6776554 21 2 67899999999999999999996 5778888888888
Q ss_pred hcCCc-eeE
Q 006633 593 DGMEW-EGR 600 (637)
Q Consensus 593 ~~~~W-~~~ 600 (637)
+.+.+ ++.
T Consensus 149 ~~~g~~ei~ 157 (187)
T COG2242 149 EQLGGREIV 157 (187)
T ss_pred HHcCCceEE
Confidence 99988 554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0019 Score=71.82 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccc-ccc--CC--CCCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAM--ST--YPRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wc-e~~--~~--yp~t~Dl~H~ 546 (637)
...+|||||||.||++.+|++. + .-.|+..|.+..++..+.++ |+--.+.--+ ..+ .. -+.+||.|-+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 3578999999999999888764 2 12355556666677665443 5410010011 121 11 1378999986
Q ss_pred c------cccccCCC------CcC-------HHHHHHHHhhcccCCcEEEEE
Q 006633 547 D------SIFSLYKD------RCE-------MEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 547 ~------~lfs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+ |++..... .-+ -..+|-++-|+|||||.++++
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5 33331110 000 137899999999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0047 Score=67.17 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
.+.+++.+.+++...+ .+|||+|||+|.++..|++. .++++++++..+..+.. .+...++ ++.+...|...+-
T Consensus 183 ~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHH
Confidence 3445555555553222 26999999999999998876 45666665443332222 2223344 4677777754421
Q ss_pred --------C---C-----CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 --------Y---P-----SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 --------f---p-----d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ . ...||+|+.-.--.. -...+++.+. +|++.++++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcC
Confidence 1 0 123799987542211 2334555544 48999999864
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.005 Score=67.15 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccC-C
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL-P 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~L-p 277 (637)
+..++.+.+.+... ..++||++||+|.++..|++. .++++++++..+..+.. .+...++ ++.+...|+... +
T Consensus 193 e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 193 EKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHH
Confidence 33444454444321 236999999999999988876 46666665443332222 2223344 577777776442 1
Q ss_pred -CC--------------CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 -YP--------------SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 -fp--------------d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. ...||+|+.-.-. .. -...+++.+.+ |++.++++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G-~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AG-LDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC---CC-CcHHHHHHHHc---cCCEEEEEeC
Confidence 10 2258999986522 11 23445555543 7888888864
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=62.36 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH---cCCCeE---EEE-eccccCCCCCCCeeEEEec
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE---RGVPAL---IGV-MASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e---rg~~~~---~~~-~d~~~Lpfpd~sFDlV~~s 289 (637)
..++|||+|||.|..+..+.+. + ....+...|.++.+.+++.. ...... +.. .-....++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3568999999999765544442 1 11122222556666665542 121111 100 001122332 23999999
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++|..+..+....+++.+.+.+.+ +|++..|
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 999888864566677777777765 8988877
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.03 Score=55.46 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=59.6
Q ss_pred EEEEECCCCchHHHHHhh--c--CCEEEEcCccccHHHHHHH-HHHcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 221 TAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQF-ALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~--~--~v~~vdisp~Dls~a~i~~-A~erg~~-~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
+++|||+|.|.-+.-|+= - .++.++-... ..+.++. +.+-+.. +.+....++. +.....||+|++-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc--
Confidence 799999999965555543 2 4455544321 2222332 2233443 7777777766 5567889999986544
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
....++.-+...|++||.+++.
T Consensus 126 ----~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 ----PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEE
Confidence 5777999999999999999886
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.004 Score=61.53 Aligned_cols=129 Identities=15% Similarity=0.179 Sum_probs=72.9
Q ss_pred CCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHHH
Q 006633 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALE 261 (637)
Q Consensus 185 g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~e 261 (637)
|..+..|.+... ....+...+.+.+++....-.+.++||+-||+|.++...+++|. +.++. +....+..++
T Consensus 10 gr~l~~p~~~~~-RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~-----~~~a~~~i~~ 83 (183)
T PF03602_consen 10 GRKLKTPKGDNT-RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEK-----NRKAIKIIKK 83 (183)
T ss_dssp T-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES------HHHHHHHHH
T ss_pred CCEecCCCCCCc-CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEEC-----CHHHHHHHHH
Confidence 344555554322 33345566667777764312244999999999999999999963 44444 3333333222
Q ss_pred ----cCC--CeEEEEeccc-cCC---CCCCCeeEEEeccccccCCcCC-HHHHHHHHH--hcccCCeEEEEEeC
Q 006633 262 ----RGV--PALIGVMASI-RLP---YPSRAFDMAHCSRCLIPWGQYA-DGLYLIEVD--RVLRPGGYWILSGP 322 (637)
Q Consensus 262 ----rg~--~~~~~~~d~~-~Lp---fpd~sFDlV~~s~~L~h~~~~d-~~~~L~ei~--RvLKPGG~Lvls~p 322 (637)
-+. .+.+...|.. .++ .....||+|+.-. |+.... ...++..+. .+|+++|.+++...
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 122 2556656632 221 2468899999876 444423 267777776 79999999999864
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0065 Score=60.78 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=61.3
Q ss_pred ceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhhcc------cc-hhhccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGL------IG-TYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl------~~-~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
---||.+|||+|.-=-++-. +.+-|.- .|..++|-+++-.+-- +. .+|.-.|.+.-.+ .+||.|-+.-
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~---lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTC---LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEE---eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 44579999999964444433 3333333 4445567666544321 11 2333346666555 8999766532
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+.- +.-+....|-|+-|||||||.+|+-+.+
T Consensus 154 vLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 154 VLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 221 2234568999999999999999997643
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0093 Score=67.22 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=62.9
Q ss_pred CCEEEEECCCCchHHHHHhhc----C-CEEEEcCccccHHHHHHHH----HHcCC-CeEEEEeccccCC-CCCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFA----LERGV-PALIGVMASIRLP-YPSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~-v~~vdisp~Dls~a~i~~A----~erg~-~~~~~~~d~~~Lp-fpd~sFDlV~ 287 (637)
+.+|||+++|.|.=+..+++. + +.+.|+ +...++.. .+-|+ ++.+...|...+. ...+.||.|+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~-----~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEY-----SASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeC-----CHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 449999999999888887765 2 444555 33333322 22344 3556666665553 3346799999
Q ss_pred ----eccc--c-------ccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 ----CSRC--L-------IPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ----~s~~--L-------~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+.. + ..|..+ -...+|..+.+.|||||+++.++-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 5422 1 122221 124689999999999999999864
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00028 Score=67.27 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=48.0
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCc
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNW 326 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w 326 (637)
....+|.+++.|+|++.++++|+..++...+++++.|+|||||+|-++.|..++
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 456789999999999999999999767778999999999999999999886654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0031 Score=64.29 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=66.9
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCC--C--eEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeec
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDD--P--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
... ...+.|+|+|+|.|.++.++.++ + ++++ |.+ ..++.+.+..=|... =..-|.++|. +|++...
T Consensus 96 ~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp-~v~~~~~~~~rv~~~--~gd~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 96 FDF-SGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLP-EVIEQAKEADRVEFV--PGDFFDPLPV-ADVYLLR 165 (241)
T ss_dssp STT-TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-H-HHHCCHHHTTTEEEE--ES-TTTCCSS-ESEEEEE
T ss_pred ccc-cCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccH-hhhhccccccccccc--cccHHhhhcc-ccceeee
Confidence 455 67899999999999999999754 2 3333 333 344444441111111 1134578899 9999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCC--cEEEEEeC
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPE--GSVIIRDD 581 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPg--G~~i~~d~ 581 (637)
+++-.+.+. +...||-.+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 888877653 4568999999999999 99999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=61.49 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=77.5
Q ss_pred CCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh--cc--------cchhh-ccccccCCCCCccce
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER--GL--------IGTYQ-NWCEAMSTYPRTYDL 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR--gl--------~~~~~-~wce~~~~yp~t~Dl 543 (637)
.+.++||++|||.|+++..+.+++ + .+++-+|..++.+..+.+. .+ +-+.+ |--+-....+++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999998887764 3 3455555555666666543 00 01111 111111223689999
Q ss_pred eeeccccccCCC-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccC--CCCCCcceEE
Q 006633 544 IHADSIFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKIL 615 (637)
Q Consensus 544 ~H~~~lfs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l 615 (637)
|=++........ .--....+-.+-|+|+|||.+++.- ..+.+..+.+.++..=..+..+..- .-+.+.-.++
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~ 228 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFT 228 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEE
Confidence 876543221111 1113567778899999999999852 2334444444333332233322211 1111235688
Q ss_pred EEEe
Q 006633 616 FANK 619 (637)
Q Consensus 616 ~~~K 619 (637)
+|.|
T Consensus 229 ~as~ 232 (270)
T TIGR00417 229 IGSK 232 (270)
T ss_pred EEEC
Confidence 8887
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0046 Score=64.43 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
..+||||+||.|+++.+|++. .- .|+..|.+...+..+.++ |+ +-+++ |. ..+......||.|-+|
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLD 147 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEc
Confidence 467999999999999877553 11 355667776677665443 43 22232 21 1222222569998765
Q ss_pred cccccCC------------CCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYK------------DRCEM-------EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~------------~~c~~-------~~~l~e~dRiLrPgG~~i~~ 579 (637)
-=.|... +.-++ ..+|-++-++|||||+++.+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4433210 00011 25888999999999999997
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0043 Score=69.06 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchh-hccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTY-QNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~-~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
....|||+|||.|+++.+|++..- -..|+..|.++.++..+.++ |+ +.+. +|..+....++ .+||.|=++.=
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 356899999999999988876510 02456667776777666443 33 1111 13222111233 68999875443
Q ss_pred cccCC------------CC-------cCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYK------------DR-------CEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~------------~~-------c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+|... .. .....+|-+.-++|||||.++++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 33210 00 112368889999999999999863
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.015 Score=63.38 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=81.7
Q ss_pred CCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh-ccc------------chhh-ccccccCCCCCc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER-GLI------------GTYQ-NWCEAMSTYPRT 540 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR-gl~------------~~~~-~wce~~~~yp~t 540 (637)
...++||++|||.|+.++.+.+.+ + .+|+-+|..+.+++++.+. .|. -+.+ |--+-+..-++.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 457899999999999988888764 4 4555556665788888752 111 0111 111111223468
Q ss_pred cceeeeccccccC--CCCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCceeEEeccCCCCC-Ccc
Q 006633 541 YDLIHADSIFSLY--KDRCEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPR-QRE 612 (637)
Q Consensus 541 ~Dl~H~~~lfs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~~ 612 (637)
||+|=++--.... ..+---..++-.+-|.|+|||.+++... .+....+.+.++..-..+..+..---+. ..-
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~W 306 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDW 306 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCce
Confidence 9998876211110 1111114678889999999999988643 2232333443333333333222111111 126
Q ss_pred eEEEEEecCCCC
Q 006633 613 KILFANKKYWTA 624 (637)
Q Consensus 613 ~~l~~~K~~w~~ 624 (637)
.+++|.|.....
T Consensus 307 gF~~as~~~~~~ 318 (374)
T PRK01581 307 GFHIAANSAYVL 318 (374)
T ss_pred EEEEEeCCcccc
Confidence 688888766544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=61.78 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=77.3
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc-----cchhh-ccccccCCCCCccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL-----IGTYQ-NWCEAMSTYPRTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl-----~~~~~-~wce~~~~yp~t~D 542 (637)
...++|||+|||.|+.+..++++ ++ .+|+-++..+..+.++.+. |+ +-+++ |--+-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45789999999999999999887 45 3455555555677777653 11 11111 11111122247899
Q ss_pred eeeeccccccCC-C-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcce
Q 006633 543 LIHADSIFSLYK-D-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREK 613 (637)
Q Consensus 543 l~H~~~lfs~~~-~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~ 613 (637)
+|=++. +..+. . .---+.++.++-|+|+|||.+++.- ..+.+..+.+.++..=-.+...-. ..-|.+...
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~ 231 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWS 231 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchhe
Confidence 987642 21111 0 0011466778899999999999852 123333443333333223332211 111222345
Q ss_pred EEEEEec
Q 006633 614 ILFANKK 620 (637)
Q Consensus 614 ~l~~~K~ 620 (637)
+++|.|.
T Consensus 232 f~~as~~ 238 (283)
T PRK00811 232 FTFASKN 238 (283)
T ss_pred eEEeecC
Confidence 6778774
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0089 Score=63.04 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEeccccC-CCCCC
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSR 281 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~L-pfpd~ 281 (637)
.+..++||-||-|.|..++.+++. .++.+++ .++.++.+++.. ..+.+...|.... .-...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEI-----D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEI-----DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEc-----CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 334479999999999999999988 4566655 445666666542 2244555554332 21234
Q ss_pred CeeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 282 AFDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+||+|++-.. .+..+. ....+++.+.|.|+++|.++...
T Consensus 149 ~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 149 KFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 8999997332 121100 23679999999999999999973
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.005 Score=68.71 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCC-CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY-PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~y-p~t~Dl~H~~ 547 (637)
..+||||+||.||.+.+|++. +- -.|+..|.++..+..+.++ |+ +-+.+ |.. .+..+ +..||.|=+|
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVD 314 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEEC
Confidence 568999999999998887653 11 1456667777788777554 44 22222 322 22223 4789998765
Q ss_pred cccccCCC---Cc---------C-------HHHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYKD---RC---------E-------MEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~~---~c---------~-------~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.--|.... += + -..+|-+.-+.|||||.++++
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 44332211 00 1 136688899999999999996
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.027 Score=60.66 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
.+.++||+||++|.|+..|++++..++.+ |..+ ..-.......+.....+..+...+.+.+|+++|-.+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AV---D~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAV---DNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEE---echh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----
Confidence 45699999999999999999998666666 3221 1111223345666666655443236789999996543
Q ss_pred CCHHHHHHHHHhcccCC--eEEEEE
Q 006633 298 YADGLYLIEVDRVLRPG--GYWILS 320 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPG--G~Lvls 320 (637)
.+.++++-+.+.|..| ..+++.
T Consensus 281 -~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 -KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -CHHHHHHHHHHHHhcCcccEEEEE
Confidence 6788888888888776 355554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.012 Score=61.20 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lp 277 (637)
..++.|.+.+...++. .|||||+|.|.++..|++++ ++++.+++ ..+..-.+. ..++.+..+|+...+
T Consensus 17 ~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~-----~l~~~L~~~~~~~~n~~vi~~DaLk~d 89 (259)
T COG0030 17 NVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEIDR-----RLAEVLKERFAPYDNLTVINGDALKFD 89 (259)
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeCH-----HHHHHHHHhcccccceEEEeCchhcCc
Confidence 3567788777766644 99999999999999999984 56666644 333333333 345788888988888
Q ss_pred CCCC-CeeEEEecccc
Q 006633 278 YPSR-AFDMAHCSRCL 292 (637)
Q Consensus 278 fpd~-sFDlV~~s~~L 292 (637)
+++. .++.|+++.-.
T Consensus 90 ~~~l~~~~~vVaNlPY 105 (259)
T COG0030 90 FPSLAQPYKVVANLPY 105 (259)
T ss_pred chhhcCCCEEEEcCCC
Confidence 8754 68999998643
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=58.90 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccCCCCCCCee
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~Lpfpd~sFD 284 (637)
.+..++||=||.|.|..++.+++. .++.+++++ ..++.+++- .+.+.+.. .. ..-..++||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fD 141 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYD 141 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCC
Confidence 345679999999999999999998 466666644 455555442 12333332 11 111236899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.-.. ....+.+.+.|.|+|||.++...
T Consensus 142 VIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 9997532 34567799999999999999964
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0069 Score=64.91 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=62.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc------c-hhhcc-ccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI------G-TYQNW-CEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~------~-~~~~w-ce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||+|.++..|.+++. +|+.+|.+++++.++.+|.-- + ....+ +..+...+.+||+|=|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 46899999999999999998753 678889888999998887320 0 11112 1223334689999888766
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+-.+... .+..++..+.++ .+||. ||+.
T Consensus 222 L~H~p~~-~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred EEecCHH-HHHHHHHHHHhh-cCCEE-EEEe
Confidence 6544332 233455566654 45555 5553
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0015 Score=62.87 Aligned_cols=135 Identities=17% Similarity=0.272 Sum_probs=78.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEE-EcCccccHHHHHHHHHHcCCCe---EEEEe--c--cccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAV-SFAPRDTHEAQVQFALERGVPA---LIGVM--A--SIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~v-disp~Dls~a~i~~A~erg~~~---~~~~~--d--~~~Lpfpd~sFDlV~~ 288 (637)
+++||++|.|--.++..|... ....+ =.+..+.+...++....++... ...++ . ..+.....+.||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 468999999966555554433 22222 2233344444444333332100 11010 0 1112234568999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec-ccCcEEE
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI-QKKDLAI 367 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~-~~~~~aI 367 (637)
+.|+ .+.+ ..+.+++.|.+.|||.|.-++..| +....++ +..+.+...++.... +.-+.+|
T Consensus 110 ADCl-FfdE-~h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~----kF~de~~~~gf~v~l~enyde~i 171 (201)
T KOG3201|consen 110 ADCL-FFDE-HHESLVDTIKSLLRPSGRALLFSP------------RRGQSLQ----KFLDEVGTVGFTVCLEENYDEAI 171 (201)
T ss_pred ccch-hHHH-HHHHHHHHHHHHhCcccceeEecC------------cccchHH----HHHHHHHhceeEEEecccHhHHH
Confidence 9999 5655 778899999999999999888877 2222333 344555666676543 5556788
Q ss_pred Eecc
Q 006633 368 WQKP 371 (637)
Q Consensus 368 WqKP 371 (637)
|||-
T Consensus 172 wqrh 175 (201)
T KOG3201|consen 172 WQRH 175 (201)
T ss_pred HHHH
Confidence 8874
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0056 Score=68.46 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=61.6
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
..+|||||||.|+++.+|++. +- ..|+.+|.+++.+..+.++ |+ +-+.+ |..+....++++||+|=++.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 468999999999999888764 11 2455556666677666543 44 22222 33222223568899986543
Q ss_pred ------ccccC------CCCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006633 549 ------IFSLY------KDRCEM-------EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 ------lfs~~------~~~c~~-------~~~l~e~dRiLrPgG~~i~~ 579 (637)
++... .+..++ ..+|-+.-|+|||||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 33211 011111 25788899999999999975
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.02 Score=65.50 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=41.5
Q ss_pred CCEEEEECCCCchHHHHHhhcC-----C--EEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccC-----CCCCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN-----I--LAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRL-----PYPSR 281 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-----v--~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~L-----pfpd~ 281 (637)
..+|||.|||+|.|...++++. . ...++...|+++..+..+..+ + ....+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999988877541 0 113333346666666655433 1 1222332221111 11125
Q ss_pred CeeEEEecccc
Q 006633 282 AFDMAHCSRCL 292 (637)
Q Consensus 282 sFDlV~~s~~L 292 (637)
.||+|+++.-+
T Consensus 112 ~fD~IIgNPPy 122 (524)
T TIGR02987 112 LFDIVITNPPY 122 (524)
T ss_pred cccEEEeCCCc
Confidence 79999997644
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=61.05 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=60.5
Q ss_pred CEEEEECCCCchHHHHHhhc------CCEEEEcCccccHHHHHHHHHHcC-----CCeEE--EEecccc----CCC--CC
Q 006633 220 RTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERG-----VPALI--GVMASIR----LPY--PS 280 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~v~~vdisp~Dls~a~i~~A~erg-----~~~~~--~~~d~~~----Lpf--pd 280 (637)
..++|+|||.|.=+..|++. .+..+.+ |++.+.++.+.++. +.+.+ ..++... ++- ..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~pl---DIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYAL---DVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEE---ECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 38999999999876665543 2223322 55666665554332 23433 3333322 221 12
Q ss_pred CCeeEEEec-cccccCCcCCHHHHHHHHHh-cccCCeEEEEEe
Q 006633 281 RAFDMAHCS-RCLIPWGQYADGLYLIEVDR-VLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s-~~L~h~~~~d~~~~L~ei~R-vLKPGG~Lvls~ 321 (637)
....+++.- ..+-.+.+++...+|+++.+ .|+|||.|++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 345666653 45656665466789999999 999999999974
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=59.40 Aligned_cols=155 Identities=13% Similarity=0.204 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcccC--CCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHH---HHHHHc----C-C-------
Q 006633 202 DAYIDDIGKLINLKD--GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQV---QFALER----G-V------- 264 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~--g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i---~~A~er----g-~------- 264 (637)
...+++|..+.+... ....+||--|||.|.++..|+..|...-+ .+++--|. .+++.. + .
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qG---NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQG---NEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccc---cHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 446777777776432 23457999999999999999988653222 13343332 222210 0 0
Q ss_pred -------------Ce---------------EE--EEeccccC---CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcc
Q 006633 265 -------------PA---------------LI--GVMASIRL---PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVL 311 (637)
Q Consensus 265 -------------~~---------------~~--~~~d~~~L---pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvL 311 (637)
++ .| ..+|..+. +-..++||+|+..+.+ .-.. +.-.++..|..+|
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~-NileYi~tI~~iL 286 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAH-NILEYIDTIYKIL 286 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echH-HHHHHHHHHHHhc
Confidence 00 00 01111000 0112469999987544 4443 7778999999999
Q ss_pred cCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeeccc
Q 006633 312 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 362 (637)
Q Consensus 312 KPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~ 362 (637)
||||+|+-.+|-.+......+ ......++-..+.+..+++.++|+.+.+.
T Consensus 287 k~GGvWiNlGPLlYHF~d~~g-~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 287 KPGGVWINLGPLLYHFEDTHG-VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred cCCcEEEeccceeeeccCCCC-CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999999885443322211 11233455566788899999999988865
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=60.23 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=66.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-------c--cchhhccccccCCCCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-------L--IGTYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-------l--~~~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
...+|||+|||+|+|.-.|++.++ -.|..+|.+.+++.--+... . |. +.+|-+-. .|++-+|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~------~d~~~~D 145 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIF------PDFATFD 145 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcC------CCceeee
Confidence 467999999999999999998864 44566677756666533321 1 11 11333321 2444443
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~ 600 (637)
-.|. .+..+|-.|.+.|+| |.+|+= |. .+.+.++...+..+.|++.
T Consensus 146 vsfi------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 146 VSFI------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred EEEe------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 3332 223468888899999 777752 32 2356666766777888765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.031 Score=56.17 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+..|+|+|+-.|+|+..++++ .|.++|+.|.+.. ..+.+.++|+..-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 349999999999999988876 2788888775443 23566666654432 33445799
Q ss_pred EEecccc---ccCCcC-----C-HHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCL---IPWGQY-----A-DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L---~h~~~~-----d-~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|-.+- -++..+ . ...++.-+..+|+|||.|++-..
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 9973221 122211 1 22355666789999999999754
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0073 Score=67.63 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCC-C-Cccceeeec--
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY-P-RTYDLIHAD-- 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~y-p-~t~Dl~H~~-- 547 (637)
...|||+|||.|+++.+|++. +- -.|+.+|.+..++..+.++ |+ ..+.-.+.....+ | .+||.|=+|
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 468999999999988777642 11 1455667776777665443 44 1111112222222 3 689988753
Q ss_pred ----cccccCC------CCcCH-------HHHHHHHhhcccCCcEEEEEe
Q 006633 548 ----SIFSLYK------DRCEM-------EDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ----~lfs~~~------~~c~~-------~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|.... ...++ ..+|-++-++|||||.+++..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3332110 11112 258999999999999999973
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0094 Score=60.04 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCcccc--HHHHHHHHHH----cC---C
Q 006633 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDT--HEAQVQFALE----RG---V 264 (637)
Q Consensus 198 ~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dl--s~a~i~~A~e----rg---~ 264 (637)
++-.-..+..+.+.+++.++. ..+|||||.|......+-. + ..++.+.+.-. +..+.+...+ .+ .
T Consensus 24 GEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred eecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344445556666777666555 9999999999876555433 3 45666644211 1111111111 12 2
Q ss_pred CeEEEEeccccCCCCC---CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 265 PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 265 ~~~~~~~d~~~Lpfpd---~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++.+..+|....++.. ..-|+|+++... +.+ +....|.++..-||+|-.++-.
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDP-DLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-TT-EEEES
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCCCCEEEEC
Confidence 3445555543322110 236999997643 333 5666778888899999887643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0047 Score=63.80 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=69.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhc--------cccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQN--------WCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~--------wce~~~~yp~t~Dl~H~~~ 548 (637)
.++|||+|||.|-....|+..+ -+|+.+|....++.++-|.-= -.+.-. -|+...-.-..||.|-|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 5789999999999999998887 588899999889999887721 001100 0111111212399888855
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+...+ -+.+.++--+=+.|+|||.++|++-.
T Consensus 167 vleHV---~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHV---KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHH---hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 54433 45578889999999999999998643
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.025 Score=60.00 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=80.2
Q ss_pred CceeEeeecccchhhhhhhcC----CCeEEEEeccCCCCcchhHHHHh-----hcc---cchh-hccccccCCCC--Ccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKINTLGVIYE-----RGL---IGTY-QNWCEAMSTYP--RTY 541 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~e-----Rgl---~~~~-~~wce~~~~yp--~t~ 541 (637)
.-++|+|+|||-|++-+.+.. .+. -+..+|.++..++.+.+ .|| +... +|..+ ..+ ..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~---~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT---SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCc
Confidence 578999999998877555432 122 23444555555554432 333 1111 12222 232 689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEE
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD---VDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 618 (637)
|+|=+.-+ .|.+.-+.+.+|-.+-|.|||||+++++-- ...+..+-+...-=.|+....-|-.++ +-.-++|++
T Consensus 197 DlVF~~AL--i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r 273 (296)
T PLN03075 197 DVVFLAAL--VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIAR 273 (296)
T ss_pred CEEEEecc--cccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEE
Confidence 99888521 233345668999999999999999999841 222222111111117888765555444 457789999
Q ss_pred ecCC
Q 006633 619 KKYW 622 (637)
Q Consensus 619 K~~w 622 (637)
|.--
T Consensus 274 ~~~~ 277 (296)
T PLN03075 274 KPGG 277 (296)
T ss_pred eecC
Confidence 9663
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=50.33 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=57.0
Q ss_pred Eeeecccchh--hhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc------cc-hhhccccccCCCCC--ccceeeeccc
Q 006633 481 LLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IG-TYQNWCEAMSTYPR--TYDLIHADSI 549 (637)
Q Consensus 481 vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------~~-~~~~wce~~~~yp~--t~Dl~H~~~l 549 (637)
++|+|||.|. +.+.+......+.. .|.+..++.....+.. +. ...+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554323333 4444445555333331 11 12122222233433 89998 6333
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 689999999999999999998654
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.022 Score=63.65 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lpf 278 (637)
+.+++...+.++..++. ++||+=||.|.|+..|+++ .|.++++++..+..++.+ |..++ .++.|..+++++..-
T Consensus 279 ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~N-A~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQEN-AAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHH-HHHcCCCcEEEEeCCHHHHhh
Confidence 33444555555544434 8999999999999999977 677787777655544443 33444 458888888776653
Q ss_pred C---CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 279 P---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 279 p---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
. ...+|.|+.-.--.. -...+++.+.+ ++|-..+++|..|
T Consensus 356 ~~~~~~~~d~VvvDPPR~G----~~~~~lk~l~~-~~p~~IvYVSCNP 398 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAG----ADREVLKQLAK-LKPKRIVYVSCNP 398 (432)
T ss_pred hccccCCCCEEEECCCCCC----CCHHHHHHHHh-cCCCcEEEEeCCH
Confidence 2 357899997542211 22345555544 5788889998653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0072 Score=64.93 Aligned_cols=93 Identities=18% Similarity=0.070 Sum_probs=54.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCC-C--CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMST-Y--PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~-y--p~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.+++.|++.---.-.|+.+|..+.++..+.+ .|+ .-++..+..... . ...||+|.++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~--- 156 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVT--- 156 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEEC---
Confidence 4689999999999999887531000013444555566666554 344 111112222211 1 2579998873
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..++.+.-.+-+.|+|||.+++-.
T Consensus 157 ------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 ------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 223344455678999999998854
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=60.48 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=76.3
Q ss_pred eeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcc--cchhhccc-cccCCCC--Cccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWC-EAMSTYP--RTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~~wc-e~~~~yp--~t~Dl~H~~~l 549 (637)
..+|++|||.|.|=.+|+.+ +++.+-+-..... .-+..|-+.|| +-++..=+ +-+..++ .+.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 58999999999999999865 3444444443332 45667778888 55554223 4444454 49998887 5
Q ss_pred cc-------cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHH-HHHHHhc
Q 006633 550 FS-------LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVK-IKSITDG 594 (637)
Q Consensus 550 fs-------~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~-~~~~~~~ 594 (637)
|. ..+.|=--+..|-++.|+|+|||.+.+. |..+..+. +.+....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 66 2234434458889999999999999994 76666665 5555443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.018 Score=59.49 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC-CCCCC-C
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL-PYPSR-A 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L-pfpd~-s 282 (637)
..++||=||-|.|..+..+++.. ++++++++ ..++.|++- ...+.+...|.... .-..+ .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-----~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-----EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-----HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-----HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 46699999999999999998863 56666644 444444421 24577777775432 11223 8
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|+.-..- +.... ....+++.+.+.|+|||.+++..
T Consensus 151 yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 151 YDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999973322 22210 23578999999999999999975
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.029 Score=57.98 Aligned_cols=107 Identities=16% Similarity=0.232 Sum_probs=71.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcccc-ccCCC-CCccceee-eccccccC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCE-AMSTY-PRTYDLIH-ADSIFSLY 553 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce-~~~~y-p~t~Dl~H-~~~lfs~~ 553 (637)
.--.|-|||||-|-.|. =...+|..|-+++.+.. ++ -|. +-.+. .+|-|++- |-.|.
T Consensus 180 ~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~-----------V~-----~cDm~~vPl~d~svDvaV~CLSLM--- 239 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS-SERHKVHSFDLVAVNER-----------VI-----ACDMRNVPLEDESVDVAVFCLSLM--- 239 (325)
T ss_pred CceEEEecccchhhhhh-ccccceeeeeeecCCCc-----------ee-----eccccCCcCccCcccEEEeeHhhh---
Confidence 45678999999886654 23457899999988765 11 121 11222 38999854 32222
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHHH---HHHHHHHHhcCCceeEEeccC
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRDDVDI---LVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~---~~~~~~~~~~~~W~~~~~~~e 605 (637)
.-++.+.+.|..|||+|||.++|.+-... +....+-+..|..+....|.+
T Consensus 240 --gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 --GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred --cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 24677999999999999999999764432 233445577888888776655
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.02 Score=60.97 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
.++.|||+|||+|.+....+..| |.++.. ....+...+....++.. +.+..+..++..+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA--S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA--SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh--hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 46799999999998887777764 454443 22222222222223332 34444445555555 568999986543
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.-+..+..-...--..|.|||.|.++=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222111112223356999999998765
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.028 Score=61.93 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CC---CeEEEEeccccC-C---CCCCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL-P---YPSRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~---~~~~~~~d~~~L-p---fpd~sFDlV 286 (637)
+++|||+=|=||.|+.+.+..|. .++.+ |.+...++.|+++ ++ ...|.++|+... . -....||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V---D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSV---DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEE---eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 45999999999999999998765 44444 5555555555543 33 356777775332 2 224589999
Q ss_pred Eecc-cc-------ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSR-CL-------IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~-~L-------~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.-. .| ..... +...++..+.++|+|||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~r-dy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQR-DYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHH-HHHHHHHHHHHHcCCCCEEEEEec
Confidence 9721 11 01111 555789999999999999999864
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.027 Score=53.04 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCceeEeeecccchh-hhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCC
Q 006633 476 GRYRNLLDMNAYLGG-FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 476 ~~~r~vlD~~~g~gg-faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
++.+.|+|+|||+|. +|..|.+.+. .|+.+|.++..++-+.++|+-.+..|+-+.-...=+.+|+|-+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys-------- 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS-------- 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE--------
Confidence 344679999999996 9999998876 6667788878888899998855554433211111167888888
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccC
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
||-..+.+..+.++++++.=++.+.-..
T Consensus 84 -----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 -----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6677888899999999999998876544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.024 Score=59.01 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCC----eEEEEeccccC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP----ALIGVMASIRL 276 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~----~~~~~~d~~~L 276 (637)
..++.|.+..+++++. .|||+|.|||.++..|++.+ |.+++++|.++.+-..+. .|.+ ..+..+|....
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccC
Confidence 3456666666666655 99999999999999999985 556666555444322221 2333 56666676665
Q ss_pred CCCCCCeeEEEecccc
Q 006633 277 PYPSRAFDMAHCSRCL 292 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L 292 (637)
++| .||.++++.-.
T Consensus 120 d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLP--RFDGCVSNLPY 133 (315)
T ss_pred CCc--ccceeeccCCc
Confidence 554 59999987533
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.008 Score=57.80 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCCcchhHHHHhhcc---------cchhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006633 508 VEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 577 (637)
Q Consensus 508 ~~~~~~~l~~~~eRgl---------~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i 577 (637)
+|-+++||.++.+|-- +..++.=++.++ ++ .+||+|=+..++... .+....|-|+.|+|||||.++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEE
Confidence 4667789998866521 233332234443 44 799998775444433 356899999999999999999
Q ss_pred EEeC
Q 006633 578 IRDD 581 (637)
Q Consensus 578 ~~d~ 581 (637)
|.|-
T Consensus 79 i~d~ 82 (160)
T PLN02232 79 ILDF 82 (160)
T ss_pred EEEC
Confidence 8764
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=64.89 Aligned_cols=123 Identities=21% Similarity=0.333 Sum_probs=64.4
Q ss_pred cchhcchhhHHHHHH---HHHHHHHhhhccCCCCC----ceeEeeecccchhhhhhh------cCCCeEEEEeccCCCCc
Q 006633 446 VTAEMFREDTALWKK---RVTYYKSVDYQLAQPGR----YRNLLDMNAYLGGFAAAL------VDDPLWVMNTVPVEAKI 512 (637)
Q Consensus 446 ~~~~~f~~d~~~w~~---~v~~y~~~~~~l~~~~~----~r~vlD~~~g~ggfaa~l------~~~~v~~mnv~~~~~~~ 512 (637)
.+-|.|+.|..++.. .|. +.+...+.. .+ .-+|||+|||.|-...+- ....+- |..++.++
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~--~al~D~~~~-~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~---VyAVEkn~ 224 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIE--EALKDRVRK-NSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK---VYAVEKNP 224 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHH--HHHHHHHTT-S-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE---EEEEESST
T ss_pred ccHhhHhcCHHHHHHHHHHHH--HHHHhhhhh-ccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE---EEEEcCCH
Confidence 467899999765553 232 122122233 22 467999999999885211 111222 22223332
Q ss_pred c---hhH-HHHhhcc---cchhhccccccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 513 N---TLG-VIYERGL---IGTYQNWCEAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 513 ~---~l~-~~~eRgl---~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
+ +++ .+.+.|+ |.++| +..... |.-.|+|=. -++..+...-.++..|.-.||.|+|||.+|=
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred hHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 2 332 2244454 44554 444444 678898764 3443334444778899999999999998763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.017 Score=65.96 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-c------------cchhh-ccccccCCCCCcc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L------------IGTYQ-NWCEAMSTYPRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l------------~~~~~-~wce~~~~yp~t~ 541 (637)
.+.++|||+|||.|+.+..+.+++- +..|+-+|..+..++.+.+.- + +-+++ |-=+-+...++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3467899999999999988877642 134444555556888887631 1 11111 1001122346899
Q ss_pred ceeeeccccccCCCC-c-C-HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeE
Q 006633 542 DLIHADSIFSLYKDR-C-E-MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~-c-~-~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~ 600 (637)
|+|-+|--. ..... . . -++++-++-|.|+|||.+++.. ..+....+.+.+++....+.
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 999886221 11100 0 1 1357778899999999999952 34455566666666544443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.019 Score=64.13 Aligned_cols=114 Identities=17% Similarity=0.215 Sum_probs=66.1
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCC-------CCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST-------YPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~-------yp~t~Dl~ 544 (637)
...|||||||.||++.+|++. +- -.|+..|.+..++..+.++ |+ .-+.--|..... .+.+||.|
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEE
Confidence 467999999999999888764 10 1345556666677666543 33 111111222222 23689987
Q ss_pred eec------cccccCCC------CcC-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006633 545 HAD------SIFSLYKD------RCE-------MEDVLLEMDRILRPEGSVIIRD----DVDILVKIKSITDG 594 (637)
Q Consensus 545 H~~------~lfs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 594 (637)
=++ |++....+ ..+ ...+|-++-|+|||||.++.+. ..+....|+.+++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 754 23321110 011 2478999999999999999763 22334445555544
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.029 Score=57.56 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=70.7
Q ss_pred CceeEeeecccchhhhhhh----cCCCeEEEEeccCCCCcchhHHHHh----hcc---cchhh-ccccccCC----C-CC
Q 006633 477 RYRNLLDMNAYLGGFAAAL----VDDPLWVMNTVPVEAKINTLGVIYE----RGL---IGTYQ-NWCEAMST----Y-PR 539 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l----~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---~~~~~-~wce~~~~----y-p~ 539 (637)
.-++|||+|||+|.-+.+| .... .|+-+|..+..+.++.+ -|+ |.+.+ |..+.+.. . ..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3779999999999644433 2222 22333444344444433 344 22222 33333322 2 36
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH--------HHHHHHHHH----HhcCCce
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------DV--------DILVKIKSI----TDGMEWE 598 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~--------~~~~~~~~~----~~~~~W~ 598 (637)
+||+|-+++-= -....++-++-|.|||||.+++-+ .. ....+|+++ ...=+|.
T Consensus 144 ~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 144 EFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 89999874321 233467778889999999998631 10 122344443 4444566
Q ss_pred eEEeccCCCCCCcceEEEEEec
Q 006633 599 GRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 599 ~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
..+.-. .+.+++++|.
T Consensus 218 ~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI------GDGVTLCRRL 233 (234)
T ss_pred EEEEEe------CCccEEEEEe
Confidence 665532 3678888875
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=53.15 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=70.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMAS 273 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~ 273 (637)
+..|..++...+|+ +||+-|.|+|+++.++++. .+... |+++...+.|++ .++ ++.+..-|.
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tf-----efH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTF-----EFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEE-----EecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 55788888888888 9999999999999998876 24444 446555555553 233 456666666
Q ss_pred ccCCC--CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCe-EEEEEeC
Q 006633 274 IRLPY--PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGG-YWILSGP 322 (637)
Q Consensus 274 ~~Lpf--pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG-~Lvls~p 322 (637)
...-| .+..+|.|+.- ++ .+-.++--++.+||.+| +|+-..|
T Consensus 167 c~~GF~~ks~~aDaVFLD-----lP--aPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLD-----LP--APWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred ccCCccccccccceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEeccH
Confidence 65554 46789999863 33 34446666777898877 4444344
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.082 Score=53.89 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-C-
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-L- 276 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-L- 276 (637)
..+..++.....+ +.||||.=||.-+..++.. .+.++++.+...... .++....++ .+.+.++.+.. |
T Consensus 63 ~fl~~li~~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLLNAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHH
Confidence 3444444444433 8999998888666555544 467777754322222 223333343 34555544322 2
Q ss_pred ----CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 ----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 ----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.++||+|+. .||.. +-..+++++.++||+||.+++..
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK~-nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADKD-NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEE----ccchH-HHHHHHHHHHhhcccccEEEEec
Confidence 145789999985 36776 56689999999999999999973
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.019 Score=63.46 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc----chhh-ccccccCCC---CCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTY---PRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~----~~~~-~wce~~~~y---p~t~Dl~H 545 (637)
.++|||++||+|+|+-+++..+- -.|+.+|.++..+..+.+- |+- -+++ |.-+.+..+ .++||+|=
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999866544432 2445556666677655431 331 1111 222222223 25899988
Q ss_pred ecccc-ccCC-----CCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCceeEEe
Q 006633 546 ADSIF-SLYK-----DRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 546 ~~~lf-s~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
+|-=+ +..+ ......+++.-.-++|+|||.++... ..+..+.+.+.+..-..++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 86443 1111 11245566667789999999999842 2345566666676666666654
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.19 Score=51.51 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeE-EEEeccccCC---CCCCCeeEEEecc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRLP---YPSRAFDMAHCSR 290 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~-~~~~d~~~Lp---fpd~sFDlV~~s~ 290 (637)
.++.+||+|+-||.|+-.++++| |.++|+.- .|+.--.+....+. +...++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~-----~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY-----GQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC-----CccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 35699999999999999999984 56666633 33333333333332 2223333332 22 3678999976
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccc----cccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWES----HWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~----~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
.|+ ....+|..+..+|+|+|.++.-.-|.--.. ..++--+.++.......++++.++..+|....
T Consensus 153 SFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 153 SFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred ehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 664 456699999999999999988753321111 12223345556666777899999999997653
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.018 Score=60.51 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=65.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC--CccceeeeccccccCC-
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFSLYK- 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp--~t~Dl~H~~~lfs~~~- 554 (637)
..+|||+|||.|.++..+.++.- ..+|+.+|.++.++..+.++ +.. ..-.+..+..++ ++||+|=++-=|-...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 34799999999999888866410 13567777777888888765 211 111233444443 7899988866665311
Q ss_pred ----C-----------Cc-CHHHHHHHHhhcccCCcEEEEE
Q 006633 555 ----D-----------RC-EMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 555 ----~-----------~c-~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. .+ .+...+...-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 11 2467888899999999988774
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.086 Score=59.05 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=79.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC--CC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST--YP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~--yp-~t~Dl~H~~ 547 (637)
...|||+|||+|.|+.+|++.. ..|+.+|.++.++..+.+. |+ +-.++ |+-+.+.. ++ .+||+|-+|
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4689999999999999998774 4677788888888877653 33 22222 33232322 32 679987652
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeE---EeccCCCCCCcceEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 619 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 619 (637)
- .|..+..++-.+-+ |.|++.++++=+. ..-..+..+.+ -.|++. .+|.-.....=|-|.+.+|
T Consensus 375 P------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 375 P------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred c------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 1 23334556655555 6999999999444 44455555543 236654 4454444434465555543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.064 Score=54.14 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHHHcC----CCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERG----VPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~ 274 (637)
..+...+++.+.. .+++||.||-|-|.....+.++.. ..+.. ++...+.-++.+ .++.+..+--+
T Consensus 88 tpiMha~A~ai~t---kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~-----hp~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAIST---KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEA-----HPDVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHhh---CCceEEEeccchHHHHHHHhhcCCcceEEEec-----CHHHHHHHHhcccccccceEEEecchH
Confidence 4456666666653 355899999999998888877743 33433 333333333333 23333333222
Q ss_pred c-C-CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 275 R-L-PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 275 ~-L-pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+ + .++++.||-|+--..-.+.. |...+.+-+.|+|||+|.|-+-
T Consensus 160 Dvl~~L~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEeechhhHHH--HHHHHHHHHhhhcCCCceEEEe
Confidence 1 2 26788999999743223333 7888899999999999999775
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=55.07 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEE
Q 006633 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (637)
Q Consensus 195 ~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~ 269 (637)
.+|..+...--.++.++.. .|. +|||.=+|.|.|+..++..+ |.++|+.|..+. ...+.++-+++. +...
T Consensus 169 v~Fsprl~~ER~Rva~~v~--~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 169 VYFSPRLSTERARVAELVK--EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVEGRVEPI 243 (341)
T ss_pred eEECCCchHHHHHHHhhhc--CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCccceeeEE
Confidence 3343433333334555543 344 99999999999999999874 555666553222 222233333332 5567
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+|....+...+.||-|+....- ....++..+.+.|++||.+-+-..
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eccHHHhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEec
Confidence 78887777666889999986422 556788999999999999988753
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.024 Score=58.06 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred eEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcc------cchhhccccccCCCC---Cccceeee
Q 006633 480 NLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL------IGTYQNWCEAMSTYP---RTYDLIHA 546 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl------~~~~~~wce~~~~yp---~t~Dl~H~ 546 (637)
.+|.+|||.|.--.=|++. ++-++ .-|-+++-+.++-++-- -..++|.++.=..+| .++|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666543 23333 33444466666655543 346667774434443 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-++|.-.. -.+...+-.+.|+|+|||.+++||
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 888886542 256789999999999999999997
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=55.63 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=66.1
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CC--EEEEcCccccHHHHHHHHHHcCCC-eEEEEeccccCC--C
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NI--LAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP--Y 278 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v--~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~~~Lp--f 278 (637)
...++...+| .+|||+.++.|.=+..|++. +. +++|+++.-+. ...+...+-|+. +.....|...++ .
T Consensus 148 ~a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 148 PALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccc
Confidence 3344555555 49999999999877777765 23 45555332111 112222233443 456666666554 2
Q ss_pred CC-CCeeEEEe------cccc-------ccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PS-RAFDMAHC------SRCL-------IPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd-~sFDlV~~------s~~L-------~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. ..||.|+. ..++ ..+... -...+|..+.++|||||.|+.++-
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 22 35999995 2222 011110 234689999999999999999964
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.1 Score=51.70 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchh--hhhhhcCCCeEEEEeccCCCCcchh-HHHHhhcc--cch
Q 006633 452 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTL-GVIYERGL--IGT 526 (637)
Q Consensus 452 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l-~~~~eRgl--~~~ 526 (637)
.+..+.|.+++-.=..+++.+.. ... +++|+|+|-|= .--|+.....=+.=|-+..-..+.| .++.+=|| +-+
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~-~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPD-FGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-C-CCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhcc-CCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 45568888888654445555554 222 69999999662 2223333332222222222222333 34445566 345
Q ss_pred hhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCceeEE
Q 006633 527 YQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 527 ~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
+|.-.|. ..++..||++=| .+-..+..++--+-+.|+|||.+++- +..+.+...++..+.+.++...
T Consensus 103 ~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 5544455 457899999887 34466777777779999999999985 4456777777778888777664
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.22 Score=49.41 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHH
Q 006633 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE 261 (637)
Q Consensus 185 g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~e 261 (637)
|..+.+|.+... ....+..-+.+.+++....-.+.++||+=+|+|.++...+.+| ++.++.+ ....+..++
T Consensus 11 gr~L~~p~~~~~-RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~-----~~a~~~l~~ 84 (187)
T COG0742 11 GRKLKTPDGPGT-RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD-----RKAVKILKE 84 (187)
T ss_pred CCcccCCCCCCc-CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC-----HHHHHHHHH
Confidence 344555554332 3334556666777775421234599999999999999999995 3444442 222222222
Q ss_pred c----C--CCeEEEEeccccC-CCCCC--CeeEEEeccccccCCcCCHHHHHHH--HHhcccCCeEEEEEeC
Q 006633 262 R----G--VPALIGVMASIRL-PYPSR--AFDMAHCSRCLIPWGQYADGLYLIE--VDRVLRPGGYWILSGP 322 (637)
Q Consensus 262 r----g--~~~~~~~~d~~~L-pfpd~--sFDlV~~s~~L~h~~~~d~~~~L~e--i~RvLKPGG~Lvls~p 322 (637)
+ + ....+...|+... +-... .||+|+.-.-+. ..--+....+.. -..+|+|+|.+++...
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 1 2 3455666665532 22222 499999876442 111022333333 4578999999999854
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.029 Score=53.33 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
.+..++|+|||.|-+.....-. -+.++|++|..+. -..+.|.+-.+.+.+.+++...+-+..+.||.++.+.-|
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALE-If~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALE-IFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHH-HHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3558999999999776433322 4666666553222 222334444566778888888887788999999988754
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.021 Score=61.66 Aligned_cols=130 Identities=20% Similarity=0.342 Sum_probs=71.9
Q ss_pred hhHHHHHHHHH--HHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc--------
Q 006633 453 EDTALWKKRVT--YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-------- 522 (637)
Q Consensus 453 ~d~~~w~~~v~--~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-------- 522 (637)
..-..|.+.+- .|.+. +........||||+||=||=---....+| -.++.+|-+..-+.-+.+|=
T Consensus 39 R~fNNwvKs~LI~~~~~~---~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~ 113 (331)
T PF03291_consen 39 RNFNNWVKSVLIQKYAKK---VKQNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNN 113 (331)
T ss_dssp HHHHHHHHHHHHHHHCHC---CCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHhHHHHHHHHHHHHHh---hhccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccc
Confidence 33455877753 44432 22224689999999999984333333343 34455566656677777765
Q ss_pred -------ccchhhccccccCC-----CC---Cccceeeecccccc---CCCCcCHHHHHHHHhhcccCCcEEEEE--eCH
Q 006633 523 -------LIGTYQNWCEAMST-----YP---RTYDLIHADSIFSL---YKDRCEMEDVLLEMDRILRPEGSVIIR--DDV 582 (637)
Q Consensus 523 -------l~~~~~~wce~~~~-----yp---~t~Dl~H~~~lfs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~ 582 (637)
+....+ .+..|.. |+ +.||+|=| -|++ ..+.-....+|--+-.-|||||+||.+ |..
T Consensus 114 ~~~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 114 SKQYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp -HTSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccccccchhhee-ccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 111111 1112221 32 59999776 4443 234444567999999999999999998 444
Q ss_pred HHHHHHHH
Q 006633 583 DILVKIKS 590 (637)
Q Consensus 583 ~~~~~~~~ 590 (637)
.++.++++
T Consensus 191 ~i~~~l~~ 198 (331)
T PF03291_consen 191 EIVKRLRE 198 (331)
T ss_dssp HHHCCHHC
T ss_pred HHHHHHHh
Confidence 45455555
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.3 Score=49.60 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=59.9
Q ss_pred CCEEEEECCCCchHHHHHh--hc--CCEEEEcCccccHHHHHHHH-HHcCCC-eEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLM--SR--NILAVSFAPRDTHEAQVQFA-LERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La--~~--~v~~vdisp~Dls~a~i~~A-~erg~~-~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..+++|||.|.|.=+.-|+ .. +++.+|-.. =..+.++.+ .+-+.+ +.+....++.+.-...-||+|.|-.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~--Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG--KKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc--hHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4599999999997666655 22 444444322 222333333 344554 777777776665221119999885543
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
....++.-+...||+||.+++.
T Consensus 146 ------~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 ------SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ------chHHHHHHHHHhcccCCcchhh
Confidence 5666888899999999988653
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.092 Score=52.30 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=62.5
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHH-------HHHHHHHHcC-CCe------EEEEecc
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHE-------AQVQFALERG-VPA------LIGVMAS 273 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~-------a~i~~A~erg-~~~------~~~~~d~ 273 (637)
+..++++. +|+|+=.|.|.|++.++.. .-.+..+.|.+... .+...+++.. .+. .+.....
T Consensus 43 FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 43 FAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred EeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 33456655 9999999999999998876 22566776655421 1111221111 011 1111111
Q ss_pred ccCC-CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLP-YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lp-fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+. .+..++|+++...-+ | .. ...++..++++.|||||.+++..+
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~-~~-~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-H-PA-TAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred Ccccccccchhhhhhhcccc-C-cc-hHHHHHHHHHHhcCCCcEEEEEec
Confidence 1111 234455555554433 4 22 678899999999999999999865
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.068 Score=53.26 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+++|||+|.|+|..+..-+.. .+...|+.|. ...+..-.+..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3569999999999777666655 3566677542 2222222344566666666544333 6678999999988844
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-. ...+++. +.+.|+..|.-++.+
T Consensus 155 ~~--~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HT--EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ch--HHHHHHH-HHHHHHhCCCEEEEe
Confidence 43 4666777 666666666655554
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.1 Score=56.36 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc------------C--------CEEEEcCccccHHHHHHHHHH-----cCCCeEEE-
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR------------N--------ILAVSFAPRDTHEAQVQFALE-----RGVPALIG- 269 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~------------~--------v~~vdisp~Dls~a~i~~A~e-----rg~~~~~~- 269 (637)
....-+|+|+||..|..+..+.+. + +.--|+-.+|.+.-....... ...++...
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344568999999999877665432 1 223466556666443322211 12233322
Q ss_pred -EeccccCCCCCCCeeEEEeccccccCCcC------C--------------------------------HHHHHHHHHhc
Q 006633 270 -VMASIRLPYPSRAFDMAHCSRCLIPWGQY------A--------------------------------DGLYLIEVDRV 310 (637)
Q Consensus 270 -~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~------d--------------------------------~~~~L~ei~Rv 310 (637)
-++...--||+++.|+++++.++ ||... + ...+|+-=.+-
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 22344445899999999999999 77542 1 11233444566
Q ss_pred ccCCeEEEEEeC
Q 006633 311 LRPGGYWILSGP 322 (637)
Q Consensus 311 LKPGG~Lvls~p 322 (637)
|+|||.+++...
T Consensus 173 Lv~GG~mvl~~~ 184 (334)
T PF03492_consen 173 LVPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEEE
T ss_pred eccCcEEEEEEe
Confidence 899999999865
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.056 Score=60.21 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=69.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCC---Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYP---RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp---~t~Dl~H~~ 547 (637)
..+|||++||+|.|+..|++.. -.|+.+|.++.++..+.+ .|+ +-+++ |..+.+..++ .+||+|-.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999999998752 245666776677766654 233 22333 3333233332 478887652
Q ss_pred cccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
- .|-. .+.++-++.+ |+|++.++++-+...+.+-.+.+..-.|++.
T Consensus 370 P------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 P------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred c------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 1 1222 3455555555 8999999999666666544444444456654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.17 Score=52.72 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHH---cCCCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~e---rg~~~~~~~~d~~~L 276 (637)
...++.|.+.+....+. .|||||+|.|.++..|++.+ +++++.++ ...+.-.+ ...++.+...|+..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~-----~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEIDP-----DLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESSH-----HHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCcH-----hHHHHHHHHhhhcccceeeecchhcc
Confidence 55677888888766444 99999999999999999874 66666643 34444434 245688888898887
Q ss_pred CCCC---CCeeEEEeccccccCCcCCHHHHHHHHHhcccC
Q 006633 277 PYPS---RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRP 313 (637)
Q Consensus 277 pfpd---~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKP 313 (637)
..+. +.-..|+++. ++. -...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~Nl---Py~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNL---PYN--ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEE---TGT--GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEe---ccc--chHHHHHHHhhcccc
Confidence 7654 4567777765 332 345567776664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.1 Score=55.27 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CC---CeEEEEecccc-CC-C-CCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIR-LP-Y-PSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~---~~~~~~~d~~~-Lp-f-pd~sFDlV~ 287 (637)
+++|||+=|=||.|+.+.+..|. .++.+ |.+...++.++++ +. ...+...|... +. . ..+.||+|+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~V---D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSV---DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEE---ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45999999999999998887763 34444 5555555554433 32 35677777533 11 1 246899999
Q ss_pred ecc-ccc----cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 CSR-CLI----PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ~s~-~L~----h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+-. .+. .... +...++..+.++|+|||.+++...
T Consensus 201 lDPPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 821 110 1111 455788899999999999988753
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.038 Score=56.88 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=59.9
Q ss_pred eeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC--CCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||+|.++.+++++ +. .+|..+|-.+.++..+.+. +.. .+-.+..+..+ +..||+|=+|==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~n-~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKRI-VPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHhh-ccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 48999999999999988653 22 3666777766677776643 322 22223444444 368999887655542
Q ss_pred C-----CC---CcCHH-HHHHHHhhcccCCcEEEE
Q 006633 553 Y-----KD---RCEME-DVLLEMDRILRPEGSVII 578 (637)
Q Consensus 553 ~-----~~---~c~~~-~~l~e~dRiLrPgG~~i~ 578 (637)
. .. ...+. .++-..-|+||||+. |+
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 12 22334 466666788888887 55
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.16 Score=51.79 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=66.0
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--C--CCCCe
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--Y--PSRAF 283 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--f--pd~sF 283 (637)
++.+|+ +||-+|..+|+....+++- -|.++.+++.. -...+..|.+|. ++.-...|+. .| | --..+
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~-~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRS-MRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMV 144 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHH-HHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--E
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchh-HHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccc
Confidence 344555 9999999999888887764 36789998743 345667787774 5544445543 33 1 12479
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++--+ -++ +.+.++.++...||+||+++++.
T Consensus 145 DvI~~DVa---Qp~-Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVA---QPD-QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-S---STT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCC---ChH-HHHHHHHHHHhhccCCcEEEEEE
Confidence 99998432 222 56678888999999999999984
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.062 Score=54.48 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=70.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH-----hhcccchhhccc-cccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-----ERGLIGTYQNWC-EAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-----eRgl~~~~~~wc-e~~~~yp~t~Dl~H~~~l 549 (637)
.....+||.|||.|=....|+-+-.=.+-+|... +..+..+. +.+-++.+..-. |.|.+=+..||+|=+-=+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 4688999999999999988765533222333322 35777777 333444443111 334333479999776333
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCceeEEeccC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------------ILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~~e 605 (637)
.... ..-++..+|...-.-|+|+|.+|+.|+.. ....+++|.+.=...+...+..
T Consensus 132 lghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 2222 22355677888889999999999975431 2356666666666665544433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.046 Score=58.45 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCC-Cccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYP-RTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp-~t~D 542 (637)
...++|||+|+|.|+.+.++++++ |.-+-++..|. ..+.++.+. |+ +-+++ |--+-....| +.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 447899999999999999998874 43333344433 455555442 11 11111 1000112343 7899
Q ss_pred eeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEE
Q 006633 543 LIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 543 l~H~~~lfs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+|-++.-....... ---+.++-.+-|.|+|||.++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98875422111110 01146788899999999999873
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.03 Score=56.04 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=72.7
Q ss_pred chhhHHHHHHHHHHHH-HhhhccCCCCCceeEeeecccch----hhhhhhcC----CCeEEEEeccCCCCcchhHHHHhh
Q 006633 451 FREDTALWKKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLG----GFAAALVD----DPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~-~~~~~l~~~~~~r~vlD~~~g~g----gfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
|-.|...|..-.+... .++..... ++.=+|..+||++| +.|-.|.+ ..-|-+.+..+|-+...|+.| .+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~-~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~ 82 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARP-GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RA 82 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHhhccccCC-CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-Hh
Confidence 5556666665554333 22222233 46788999999999 55555555 123578899999987777664 45
Q ss_pred cccc------------------------------------hhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHH
Q 006633 522 GLIG------------------------------------TYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLE 565 (637)
Q Consensus 522 gl~~------------------------------------~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e 565 (637)
|+++ ..||.++ ..+.+.-||+|=|-+|+-.+. .-....++--
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 5533 2233333 223348899999999987553 3345789999
Q ss_pred HhhcccCCcEEEEEeCH
Q 006633 566 MDRILRPEGSVIIRDDV 582 (637)
Q Consensus 566 ~dRiLrPgG~~i~~d~~ 582 (637)
+-+.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999997544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.06 Score=57.25 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER 262 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er 262 (637)
++.+.+.+...++. .+||.+||.|..+..+++. +..++++ |.++.+++.|.++
T Consensus 8 l~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vigi---D~D~~al~~ak~~ 63 (296)
T PRK00050 8 LDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAI---DRDPDAIAAAKDR 63 (296)
T ss_pred HHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEE---cCCHHHHHHHHHh
Confidence 44555565545443 8999999999999999987 2456666 6667777777655
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.068 Score=58.16 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASI 274 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~ 274 (637)
.++.+.++++..+ ..+||+-||+|.|+..|++. .|+++++.+..+..+.. .|..+++ ++.|..+++.
T Consensus 185 l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~-Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 185 LYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE-NAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH-HHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH-HHHHcCCCcceEEEeecc
Confidence 3444444544332 27999999999999999997 45555554433332222 2233343 5777766544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.093 Score=57.72 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=35.4
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCC-------------------------------------HHHHHHHHHhcccCCeE
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYA-------------------------------------DGLYLIEVDRVLRPGGY 316 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d-------------------------------------~~~~L~ei~RvLKPGG~ 316 (637)
..--||+++.+++|++.++ ||...- ...+|+-=.+-|.|||.
T Consensus 154 Y~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~ 232 (386)
T PLN02668 154 YRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGA 232 (386)
T ss_pred cccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 3334899999999999999 887521 11233334566899999
Q ss_pred EEEEeCCC
Q 006633 317 WILSGPPV 324 (637)
Q Consensus 317 Lvls~pp~ 324 (637)
++++....
T Consensus 233 mvl~~~Gr 240 (386)
T PLN02668 233 MFLVCLGR 240 (386)
T ss_pred EEEEEecC
Confidence 99996543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.088 Score=57.83 Aligned_cols=95 Identities=9% Similarity=0.127 Sum_probs=63.7
Q ss_pred CEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC-CCCCCeeEEEecccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCL 292 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp-fpd~sFDlV~~s~~L 292 (637)
.+|||+.||+|..+..++.+ + |+++|+++....... +.+..++. ++.+...|+..+- .....||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 48999999999999999886 3 566666553332222 22222333 3566666655442 1235799998753
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+. .+..++..+.+.+++||.+.++.
T Consensus 123 --fG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --FG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 33 45679999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.17 Score=52.97 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=53.8
Q ss_pred CCCEEEEECCCCc--hHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCC--CC----CCC
Q 006633 218 SIRTAIDTGCGVA--SWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLP--YP----SRA 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG--~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lp--fp----d~s 282 (637)
.++..||||||.= .....++++ .|..+|.+|.-+..+.. -+..... ..+..+|..+.. +. .+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ra--lL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARA--LLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHH--HHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHh--hhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3678999999943 455666554 57777776633322221 1122334 667777754321 00 112
Q ss_pred ee-----EEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FD-----MAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FD-----lV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+| .|+...+|+++.+ +++..++..+...|.||.+|+++..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 4555677766655 3888999999999999999999964
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.12 Score=55.21 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=77.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCC----CCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST----YPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~----yp~t~Dl~H~~~l 549 (637)
...|||+|||+|.|+..|+++. ..|+.+|.++.++..+.+. |+ .-.+-.+..... .+..||+|-.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3689999999999999999864 3678888887788776543 44 111111222211 22579998875
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhcCCceeE---EeccCCCCCCcceEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDIL-VKIKSITDGMEWEGR---IADHENGPRQREKILFANK 619 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 619 (637)
..|..+...++++=.-++|++.++++-+...+ +.++.+ . .|++. .+|.-.....=|-|.+.+|
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 23444444444554447899999998555433 444444 2 46655 3454444434466666554
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.064 Score=52.92 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=67.1
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHH----HHhhccc---chhh-ccccccCCCCCccceeeeccccc
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV----IYERGLI---GTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~eRgl~---~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
+|||.|||-|.+=..|++.+.-- -++.+|=++..+.. +-.+|+- .... |.-.. ...+.-||+||=-|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 99999999999999998876311 14555555444332 2334542 1111 22222 22467788888666654
Q ss_pred ---cC--CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhc
Q 006633 552 ---LY--KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDG 594 (637)
Q Consensus 552 ---~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~ 594 (637)
+. .....+..++--++++|+|||.|+|+.=.-..+++.+....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 22 11122345677789999999999999755444444444333
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.11 Score=53.12 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=78.4
Q ss_pred CCceeEeeecccchhhhhhhcCCCe-EEEEeccCCCCcchhHHH----Hhhcc----cchhh-ccccccCCCC-Cccce-
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVI----YERGL----IGTYQ-NWCEAMSTYP-RTYDL- 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~----~eRgl----~~~~~-~wce~~~~yp-~t~Dl- 543 (637)
.+.-+|||.-.|+|=+|..-++++- .|..| .+|. |-|+.+ +-|+| |-+++ |--|...+|+ .+||.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITV-EKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEE-eeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 5678999999999999988877754 22222 2221 222222 23444 33444 4447778898 78994
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------eCHHHHHHHHHHHhcCCceeEEec
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------DDVDILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------d~~~~~~~~~~~~~~~~W~~~~~~ 603 (637)
||=--=||.-. .=--+.+--|+-|||||||.+.=- --.+....|.+.+.+.-..+.-..
T Consensus 210 iHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 210 IHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred eeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 78655566433 111157888999999999998753 123466777777777777654443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.035 Score=56.06 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=46.6
Q ss_pred CceeEeeecccchhhhhhhcCC--Ce-EEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PL-WVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v-~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H 545 (637)
..-+|||+|||+|=++|.|... ++ -|.. ++..+.....+.++ |+ +.+.+ ......+| ..||.||
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~---vE~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVS---VERDPELAERARRNLARLGIDNVEVVV--GDGSEGWPEEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEE---EESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGTTGGG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEE---ECccHHHHHHHHHHHHHhccCceeEEE--cchhhccccCCCcCEEE
Confidence 3679999999999887777542 22 2232 23332333333222 33 22232 12344455 4699999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+.+ ..+.+--++-+-|||||.+|+-
T Consensus 147 v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 147 VTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred Eee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 832 2233334444559999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.061 Score=51.92 Aligned_cols=95 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhhccccccCCC--C-Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY--P-RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~~wce~~~~y--p-~t~Dl~H~~~ 548 (637)
....+|||+|||.|.++..|+++. -.|+.+|.++.+++.+.++-- +.+++ ..+..+ + ..||.|=++-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECC
Confidence 345689999999999999999873 356666777677777766521 22333 333333 3 3578765533
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
-|.. ..-.+..+ ++.. -+.++|.+++..
T Consensus 86 Py~~--~~~~i~~~-l~~~-~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNI--STPILFKL-LEEP-PAFRDAVLMVQK 113 (169)
T ss_pred Cccc--HHHHHHHH-HhcC-CCcceEEEEEEH
Confidence 3321 11222233 3322 256899998864
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.13 Score=56.21 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=67.7
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcc
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNW 530 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~w 530 (637)
|.+....|.+ .++|..+...+.+ +. -++|++||+|+...+...-.. -++...+....++...-+--.-..+++-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~-~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFP-GS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcc-cc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4445555654 3445554444555 33 778999999999888764422 3334444442333332222221122222
Q ss_pred cc------ccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 531 CE------AMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 531 ce------~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|. ...+++ .+||.+-+. ....+.-+.+.++.|+-|+|+|||++|.-
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 21 122455 899975541 11123356679999999999999999985
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.1 Score=50.93 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=52.4
Q ss_pred CCceeEeeecccch--hhhhhhcCCCeEEEEeccCCCCc--chhHHHHhhcc------cc-hhhcccccc--CCC-CCcc
Q 006633 476 GRYRNLLDMNAYLG--GFAAALVDDPLWVMNTVPVEAKI--NTLGVIYERGL------IG-TYQNWCEAM--STY-PRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~g--gfaa~l~~~~v~~mnv~~~~~~~--~~l~~~~eRgl------~~-~~~~wce~~--~~y-p~t~ 541 (637)
.+.++||++|||+| |.+++... + ...|+-+|.++ ..+....++.. +- ...+|.+.. ... ++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~--~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-G--AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc-C--CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45789999999998 55555551 1 12233344432 23334444322 11 334898744 112 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|-+.-++=. .-..+.++-=+.++|.|+|.+++..
T Consensus 121 D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99998444321 1234677777899999999988863
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.26 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCchHHHHHhh
Q 006633 218 SIRTAIDTGCGVASWGAYLMS 238 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~ 238 (637)
....|+|+|||.|.++..|+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHH
Confidence 355899999999999999988
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.76 Score=50.38 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=72.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC-------------------------------------------CEE
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-------------------------------------------ILA 243 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~-------------------------------------------v~~ 243 (637)
.|..+....++ ..++|-=||+|++....+-.+ +.+
T Consensus 182 Ail~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 182 AILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444444444 489999999999987765442 346
Q ss_pred EEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc-cCCcC-CHH----HHHHHHHhcccCCe
Q 006633 244 VSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI-PWGQY-ADG----LYLIEVDRVLRPGG 315 (637)
Q Consensus 244 vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~-h~~~~-d~~----~~L~ei~RvLKPGG 315 (637)
+|+++..+..+.. .|++.|+. +.|.++|...++-+-..+|+|+|+.-.- -+..+ ..+ .+...+.+.++--+
T Consensus 260 ~Did~r~i~~Ak~-NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 260 SDIDPRHIEGAKA-NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred ecCCHHHHHHHHH-HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 6776655443332 44555665 7899999988875447899999987320 11110 122 34456667888888
Q ss_pred EEEEEeC
Q 006633 316 YWILSGP 322 (637)
Q Consensus 316 ~Lvls~p 322 (637)
.++++++
T Consensus 339 ~~v~tt~ 345 (381)
T COG0116 339 RYVFTTS 345 (381)
T ss_pred eEEEEcc
Confidence 8888865
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.37 Score=50.89 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=73.6
Q ss_pred CceeEeeecccchhhhhhhcC----CC-eEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCC-----CCccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYD 542 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~y-----p~t~D 542 (637)
+.++||++|+++|..+.+|+. .+ |+++-.-|.... -..+.+-+-|+ |-+.+ +-.+.+..+ +.+||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 478999999999999988865 22 333332221111 11222234455 11111 222222222 45899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------C---HHHHHHHHH----HHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------D---VDILVKIKS----ITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~---~~~~~~~~~----~~~~~~W~~~~~~~e~ 606 (637)
+|=.++ +.-....++-..-+.|||||.+|+-+ . ......|++ +.+.=+++..+.-.
T Consensus 197 ~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi-- 268 (278)
T PLN02476 197 FAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI-- 268 (278)
T ss_pred EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe--
Confidence 987643 22345677777789999999998841 1 011123333 45556677776533
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
.+.+++++|+
T Consensus 269 ----gDGl~i~~K~ 278 (278)
T PLN02476 269 ----GDGMTICRKR 278 (278)
T ss_pred ----CCeeEEEEEC
Confidence 3678888874
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.2 Score=50.54 Aligned_cols=131 Identities=20% Similarity=0.287 Sum_probs=75.8
Q ss_pred CceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCC-----CCccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYD 542 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~y-----p~t~D 542 (637)
+.++||.+|+++|=-+.+|++ . .|+++-.-|.... -..+.+..-|+ |-+.+ |..+.+... +.+||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 478999999999977777753 2 3555555443222 22233344465 33332 344444433 35899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------------HHHHHHHHHHHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------------VDILVKIKSITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------~~~~~~~~~~~~~~~W~~~~~~~e~ 606 (637)
+|=.++ +.-....++-..-+.|||||.+|+-+- ..+.+-.+.+.+.=+.+..+...
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi-- 195 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI-- 195 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS--
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe--
Confidence 987654 233444566666799999999998521 11223334456666777777643
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
.+.|++++|+
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 4678999885
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.17 Score=56.87 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASI 274 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~ 274 (637)
++.+...+.+.+.+..++ .+||+-||||.++..+++. .|+++.++|.++..|.. .|..+|+ ++.|.++.++
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchh
Confidence 344455566666665554 8999999999999999987 67888887766665544 3445554 5778776433
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.21 Score=52.80 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCC-eEEEEeccccC-C-CC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRL-P-YP 279 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~~~L-p-fp 279 (637)
....+...++ ..|||+.+|.|.=+..+++. .+.+.|+.+.-+. .......+-|.. +.....|.... + ..
T Consensus 77 ~~~~L~~~~~--~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 77 VALALDPQPG--ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKP 153 (283)
T ss_dssp HHHHHTTTTT--SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHH
T ss_pred cccccccccc--ccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeecccccccccc
Confidence 3444444444 48999999999888777765 2555666432111 111222233443 44444555444 1 23
Q ss_pred CCCeeEEEe----ccc--cccCC-------cC-------CHHHHHHHHHhcc----cCCeEEEEEeC
Q 006633 280 SRAFDMAHC----SRC--LIPWG-------QY-------ADGLYLIEVDRVL----RPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~----s~~--L~h~~-------~~-------d~~~~L~ei~RvL----KPGG~Lvls~p 322 (637)
...||.|+. +.. +..-+ ++ -...+|..+.+.| ||||+++.++-
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 446999995 222 21111 10 2336899999999 99999999964
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.29 Score=49.85 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=80.3
Q ss_pred CceeEeeecccchhhhhhhcC----CC-eEEEEeccCCCCcchhHHHHhhcc---cchhh--ccccccCC-CCCccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGVIYERGL---IGTYQ--NWCEAMST-YPRTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~--~wce~~~~-yp~t~Dl~H 545 (637)
..++||.+|.+.|=-|..|+. .. +.+.-+-|.-.. ...+...+-|+ |-.+. |+-+.++- ...+||+|-
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-IARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 489999999999866666643 22 333333332221 22333344455 22333 77777774 679999976
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------------eCHHHHHHHHHHHhcCCceeEEeccCCCCCCc
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------------DDVDILVKIKSITDGMEWEGRIADHENGPRQR 611 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 611 (637)
.+. +.-+-+..|-+.=+.|||||.+|+- +......+|++...-+.++-+.. +.--| ..
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~lP-~g 209 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD-TVLLP-LG 209 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce-eEEEe-cC
Confidence 521 4455678888888999999999884 11234555666555555543221 11012 23
Q ss_pred ceEEEEEec
Q 006633 612 EKILFANKK 620 (637)
Q Consensus 612 ~~~l~~~K~ 620 (637)
+.++++.|.
T Consensus 210 DGl~v~~k~ 218 (219)
T COG4122 210 DGLLLSRKR 218 (219)
T ss_pred CceEEEeec
Confidence 789999885
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.3 Score=47.59 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=38.4
Q ss_pred EEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCC--CCCCC-eeEEEec
Q 006633 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLP--YPSRA-FDMAHCS 289 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lp--fpd~s-FDlV~~s 289 (637)
.|||+.||.|..+..+++.. |+++|+ ++..++.|+. -|+ ++.+..+|...+. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidi-----d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDI-----DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES------HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 79999999999999999985 555655 4445444443 343 4788888855432 22222 7999986
Q ss_pred c
Q 006633 290 R 290 (637)
Q Consensus 290 ~ 290 (637)
.
T Consensus 77 P 77 (163)
T PF09445_consen 77 P 77 (163)
T ss_dssp -
T ss_pred C
Confidence 6
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.13 Score=51.62 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=53.8
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCCCccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
.+|||++||+|.++..++.+.. -.|+.++..+..+..+.+ -|+ +-+++ |+.+.+....+.||+|=+|-=|-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 4799999999999975444432 244555555445544432 122 22222 33222221225699887755442
Q ss_pred cCCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006633 552 LYKDRCEMEDVLLEM--DRILRPEGSVIIRDDV 582 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 582 (637)
.. ..+.++--+ ..+|.|+|.+++.-..
T Consensus 133 ---~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 ---KG-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ---CC-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 123333333 3568999999997543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.083 Score=53.29 Aligned_cols=91 Identities=25% Similarity=0.317 Sum_probs=52.9
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cch--hhc-cccccCCCC--Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGT--YQN-WCEAMSTYP--RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~--~~~-wce~~~~yp--~t~Dl~H~~~ 548 (637)
.....||++|||.|=-+|-|.+. +-.|.-++.- .+|.-...+-| .|. ++. ......-|| .-||.|+..+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERI-EELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH---hCeEEEEEEc-HHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 44689999999999555544433 1244444443 44444444433 121 222 224455577 6799988632
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
-+ -.++.-|+| -|+|||.+|+=
T Consensus 147 aa------~~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 147 AA------PEVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred cc------CCCCHHHHH---hcccCCEEEEE
Confidence 22 234555655 69999999984
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.04 E-value=2.3 Score=44.00 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCc-hHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG-~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpf 278 (637)
+..+.++.-+.....-.+++||=+|=+-- +++..|... .++++|++.+-+. ...+.|.+.+.++.....|.. .|+
T Consensus 28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~-fI~~~a~~~gl~i~~~~~DlR-~~L 105 (243)
T PF01861_consen 28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLD-FINRVAEEEGLPIEAVHYDLR-DPL 105 (243)
T ss_dssp HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHH-HHHHHHHHHT--EEEE---TT-S--
T ss_pred HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHH-HHHHHHHHcCCceEEEEeccc-ccC
Confidence 44444554444444445679999996654 444444333 6888988654333 333467777888887777753 344
Q ss_pred C---CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCe-EEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHh
Q 006633 279 P---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 354 (637)
Q Consensus 279 p---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG-~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l 354 (637)
| .++||++++-. ++..+-...++.+....||.-| ..+++-. ..+.....|.++++....+
T Consensus 106 P~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~-------------~~~~s~~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 106 PEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFGFT-------------HKEASPDKWLEVQRFLLEM 169 (243)
T ss_dssp -TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEEE--------------TTT--HHHHHHHHHHHHTS
T ss_pred CHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEEEe-------------cCcCcHHHHHHHHHHHHHC
Confidence 4 48899999987 5554456678999999998766 3333311 0111233455677777777
Q ss_pred ceee
Q 006633 355 CWKK 358 (637)
Q Consensus 355 ~w~~ 358 (637)
++-.
T Consensus 170 gl~i 173 (243)
T PF01861_consen 170 GLVI 173 (243)
T ss_dssp --EE
T ss_pred CcCH
Confidence 7633
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.28 Score=55.45 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=57.1
Q ss_pred CceeEeeecccchhhhhhhcC----CCeEEEEeccCCCCcch---hHHHHhh-ccc--chhh-cccccc-CCCCCcccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKINT---LGVIYER-GLI--GTYQ-NWCEAM-STYPRTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~~---l~~~~eR-gl~--~~~~-~wce~~-~~yp~t~Dl~ 544 (637)
....||||.|+-||=..+|++ .+. |+..|.+..- |.-.++| |+- -+.+ |=. .+ ..+|..||.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~----lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~~fD~I 187 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGA----IVANEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPETFDAI 187 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchhhcCeE
Confidence 356899999999997777654 343 3333443333 3444455 441 1221 111 12 2457889998
Q ss_pred e----eccccccCCCC-----c---CH-------HHHHHHHhhcccCCcEEEEE
Q 006633 545 H----ADSIFSLYKDR-----C---EM-------EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 545 H----~~~lfs~~~~~-----c---~~-------~~~l~e~dRiLrPgG~~i~~ 579 (637)
- |+|.=..-++- - ++ ..||-..-+.|||||.+|.+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8 55442222110 0 11 27888889999999999987
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.26 Score=49.51 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred EEEEECCCCchHHHHHhhc----CCEEEEcCc--cccHHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEec
Q 006633 221 TAIDTGCGVASWGAYLMSR----NILAVSFAP--RDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~~vdisp--~Dls~a~i~~A~erg-----~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.+.|||||.|.+...|+.. -+.++.|-- .|.-++.++..+... .++.+.. ...+-|-.+-|..-..+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr--~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR--TNAMKFLPNFFEKGQLS 140 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee--ccchhhccchhhhcccc
Confidence 6899999999999999887 244444411 133344444433221 1111111 11121222222222222
Q ss_pred cccccCCcC-----------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 RCLIPWGQY-----------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~~L~h~~~~-----------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-.+..+++. --..++.+..-+|++||.++..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 222112210 12257899999999999999874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.33 Score=59.86 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=71.2
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh---h----------------cc---cchhh-cccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE---R----------------GL---IGTYQ-NWCEAM 534 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e---R----------------gl---~~~~~-~wce~~ 534 (637)
..|||+|||+|-.+-+|+++ +- -.|+.+|-++..+.++.+ + ++ +-+++ ||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 47999999999999998764 32 145666777677766622 1 11 23333 666544
Q ss_pred CCCCCccceeeecc--------------------------------ccccC--CCCc-CHHHHHHHHhhcccCCcEEEEE
Q 006633 535 STYPRTYDLIHADS--------------------------------IFSLY--KDRC-EMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 535 ~~yp~t~Dl~H~~~--------------------------------lfs~~--~~~c-~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
......||+|-++= ||..+ .+.- .+..|+-+.-++|+|||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21112578754421 11110 1111 1247888899999999999997
Q ss_pred eCHHHHHHHH-HHHhcCCcee
Q 006633 580 DDVDILVKIK-SITDGMEWEG 599 (637)
Q Consensus 580 d~~~~~~~~~-~~~~~~~W~~ 599 (637)
-..+.-+.|. +++++..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 5555555666 4666555544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.9 Score=49.22 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCEEEEECCC-CchHHHHHhh-cCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+|+=+|+| .|..+..+++ .+..++.+ +.++...+.|++-|....+...+.....--.+.||+|+..-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv------ 237 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV------ 237 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC------
Confidence 3488888887 4477788887 46666666 66777888888877654443222222221122399999754
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
- ...+....+.||+||.+++.+-+
T Consensus 238 --~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 --G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 44678889999999999999754
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.5 Score=48.08 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH-hhcccc------h--------hhccccccCCCC--
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-ERGLIG------T--------YQNWCEAMSTYP-- 538 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-eRgl~~------~--------~~~wce~~~~yp-- 538 (637)
..-..||+-|||.|--+.+|++++. +|+.+|.++.-++-++ ++++-. . +.-+|..|-.++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3456899999999999999999985 6777787766666664 455411 1 112455555553
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE-E-e--------CH--HHHHHHHHHHhcCCceeEEec
Q 006633 539 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII-R-D--------DV--DILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 539 --~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~-d--------~~--~~~~~~~~~~~~~~W~~~~~~ 603 (637)
..||+|-=-+.|-... .-..+.+..-|.++|+|||.+++ + + +. -....|+++.. -.|++....
T Consensus 113 ~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp CHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 3588876444443332 23456999999999999999433 3 1 00 03366777776 777776443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.3 Score=48.03 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCC-eEEEE--eccccCCCC-CCCeeEEEe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGV--MASIRLPYP-SRAFDMAHC 288 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~-~~~~~--~d~~~Lpfp-d~sFDlV~~ 288 (637)
+..+|||+|.|.|.-+..+-.- .+..++.+| .+.+.--..+..-... ..+.. ....+++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 3557999999998754443322 233333322 1111111122111110 01111 112345544 456777776
Q ss_pred ccccccCCcC-CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQY-ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..-|.|-..+ .....++.+..++.|||.|++..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 6555444432 233478889999999999999976
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.54 Score=48.17 Aligned_cols=97 Identities=5% Similarity=0.009 Sum_probs=62.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh-hccc--------------chhhccccccCCCC----
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE-RGLI--------------GTYQNWCEAMSTYP---- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e-Rgl~--------------~~~~~wce~~~~yp---- 538 (637)
...||+.|||-|==+.+|++++. .|+.+|-++.-+...++ .|+- +.+.-+|..|-..+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46899999999999999999876 45666666555555444 2221 11223444444443
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 539 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 539 --~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
..||+|---+.|-... .-....+..-|-++|||||.+++
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 3678755444444332 12345899999999999998877
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.4 Score=47.84 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-------------~wce~~~~yp~t~ 541 (637)
...++||-+|+|.|+.+..+.+. ++- .|+-++..+..++++.+. ++..+ |=-+-+..-++.|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~--~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKH--LTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHh--cccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 35789999999999999988775 453 344444444577766554 12111 0001111124689
Q ss_pred ceeeeccccccCC-CCcC--H-HHHHH-HHhhcccCCcEEEEE
Q 006633 542 DLIHADSIFSLYK-DRCE--M-EDVLL-EMDRILRPEGSVIIR 579 (637)
Q Consensus 542 Dl~H~~~lfs~~~-~~c~--~-~~~l~-e~dRiLrPgG~~i~~ 579 (637)
|+|=++ ++.-.. ..|. . ...+- .+.|.|+|||.+++.
T Consensus 178 DvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 998886 332111 1121 1 23444 688999999999874
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.12 Score=47.00 Aligned_cols=47 Identities=30% Similarity=0.547 Sum_probs=31.1
Q ss_pred CeeEEEecccc--ccC--CcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccc
Q 006633 282 AFDMAHCSRCL--IPW--GQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHW 330 (637)
Q Consensus 282 sFDlV~~s~~L--~h~--~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~ 330 (637)
.||+|+|-.+. +|+ .++-...+++.+.+.|+|||.|++. |..|....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE--pQ~w~sY~ 51 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE--PQPWKSYK 51 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----HHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe--CCCcHHHH
Confidence 48999996654 333 2223457999999999999999998 34455443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.69 Score=48.97 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=83.9
Q ss_pred cCCCCCceeEeeecccchhhhh-hhcCCCeEEEEeccCCCC----cchhHHHHhhcccchhh-ccccccCC--CC---Cc
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAA-ALVDDPLWVMNTVPVEAK----INTLGVIYERGLIGTYQ-NWCEAMST--YP---RT 540 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa-~l~~~~v~~mnv~~~~~~----~~~l~~~~eRgl~~~~~-~wce~~~~--yp---~t 540 (637)
|...++--.||||-||.|-.-- +|.+.+--..+|.=.|-+ +.--..|.+|||-++.. .-..+|.. |- -.
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCC
Confidence 4333677889999999874311 112222111122222222 13456899999955422 11123332 42 45
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhc----CCceeEEe
Q 006633 541 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDG----MEWEGRIA 602 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~----~~W~~~~~ 602 (637)
++|+-.+|||.++.+.-.+..-|-=+-++|.|||++|.+-.. -.++.|...+.+ --|-.+..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 789999999999998877778888999999999999999743 366777777755 35877643
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.4 Score=46.08 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhc----cc-----cccCCCCCccc
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQN----WC-----EAMSTYPRTYD 542 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~----wc-----e~~~~yp~t~D 542 (637)
+.. +..++||=+|.|-||-+.-+.+++- +|+-++-.+..+.+..+ ..+..|. -- .-.....++||
T Consensus 68 ~~h-~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~--~lP~~~~~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 68 CTK-KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFIS--FFPHFHEVKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred hhC-CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHH--HCHHHHHhhcCCCEEEeehhhhccCCcCC
Confidence 344 6789999999999999999999873 44444443334444333 1111210 00 00111247899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+|=.+.+|+ +...-.+.|+|+|||.++..
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 999988776 45556789999999999996
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.26 Score=48.94 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred EEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
.+.|+|+|+|.++...++. .|.++..+| ...+.|.++ ..+..+..+|+....| ...|+|+|-..=.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 7999999999887766665 677776644 233455554 2357788888888777 3479999943222
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEE
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
-+..+.....+..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 23332455678888888998888764
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.13 Score=45.34 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=37.8
Q ss_pred EEECCCCchHHHHHhhc-------CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccC--CCCCCCeeEEEeccc
Q 006633 223 IDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL--PYPSRAFDMAHCSRC 291 (637)
Q Consensus 223 LDIGCGtG~~a~~La~~-------~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~L--pfpd~sFDlV~~s~~ 291 (637)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+...+.... .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999888777763 2455665432 111222222222 2466776665432 133678999997542
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|-.+ .....++.+.+.|+|||.+++.
T Consensus 79 --H~~~-~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYE-AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HH-HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHH-HHHHHHHHHHHHcCCCeEEEEe
Confidence 3232 5667889999999999999885
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.64 Score=49.76 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=38.0
Q ss_pred Cccceeeeccccc-cCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHHHHHHHHHHhcCCceeE
Q 006633 539 RTYDLIHADSIFS-LYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 539 ~t~Dl~H~~~lfs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~~~~~~~~~~~~~W~~~ 600 (637)
..||++-|--.|- .+.+--.....|.-+-+-|||||+||=+ |...++.+++.. ...+|.-.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNd 258 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGND 258 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcce
Confidence 3499987633322 1122223346778889999999999998 444566777765 33455433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.63 E-value=2 Score=44.60 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred ceeEeeecccchhhhhhhc----CC-CeEEEEeccCCCCcchhHHHHh----hcccc-hh---hccccccCCCCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALV----DD-PLWVMNTVPVEAKINTLGVIYE----RGLIG-TY---QNWCEAMSTYPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~----~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~~-~~---~~wce~~~~yp~t~Dl~ 544 (637)
...|||.|.|.|.+.++|+ .. .|++.-. .+..++++.+ -||.- +- .|-++.. .+..||.|
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~-----r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDav 167 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI-----REDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDAV 167 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEe-----cHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCEE
Confidence 7789999999999999998 33 3444433 3344444432 25533 11 1334322 23478877
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCc
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEW 597 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W 597 (637)
-. +--+-..+|--++.+|+|||.+++- -..+++.++-+.++..+|
T Consensus 168 ~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 168 FL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred EE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 76 4444568999999999999999885 456666666666666665
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.39 Score=51.80 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=55.9
Q ss_pred CceeEeeecccchhhhhhhc---CCCeEEEEeccCCCCcchhHHHHhhcc---cchhhccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALV---DDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~---~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
+.++|||+|||+|-....=+ .+.| +-|-..+...-..++|.+-|+ |.+++.--|.. --| .-.|+|-+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V--~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvS--- 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKV--YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVS--- 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceE--EEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEee---
Confidence 37899999999997543333 3334 223222222234556667776 44444333444 345 77787664
Q ss_pred cccCCCCcC-----HHHHHHHHhhcccCCcEEEE
Q 006633 550 FSLYKDRCE-----MEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 550 fs~~~~~c~-----~~~~l~e~dRiLrPgG~~i~ 578 (637)
-|..-|. +..+|.-=||.|.|||.++=
T Consensus 134 --EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 --EWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred --hhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 3333333 34677778999999998763
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.10 E-value=2.5 Score=44.52 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh-------hccc
Q 006633 453 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE-------RGLI 524 (637)
Q Consensus 453 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e-------Rgl~ 524 (637)
-.|+.|.+.|-.=.+ .... .+.-.++|+|||.|.-+-.|... += --|..+|-++..+..+-| .|-|
T Consensus 128 pETEE~V~~Vid~~~---~~~~-~~~~~ildlgtGSGaIslsll~~L~~--~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALN---NSEH-SKHTHILDLGTGSGAISLSLLHGLPQ--CTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ccHHHHHHHHHHHHh---hhhh-cccceEEEecCCccHHHHHHHhcCCC--ceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 457889888763221 1122 22338999999999888887653 21 123344444444444433 3557
Q ss_pred chhhc-cc-cccCCCC---Cccceeeecc--ccc-----------cCCC--------CcCH--HHHHHHHhhcccCCcEE
Q 006633 525 GTYQN-WC-EAMSTYP---RTYDLIHADS--IFS-----------LYKD--------RCEM--EDVLLEMDRILRPEGSV 576 (637)
Q Consensus 525 ~~~~~-wc-e~~~~yp---~t~Dl~H~~~--lfs-----------~~~~--------~c~~--~~~l~e~dRiLrPgG~~ 576 (637)
++.|. .- +.+.++| ..+|+|-+|- +++ .|.. .|.. ..++.=.-|.|+|||++
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 77763 22 5777787 8888876642 222 1111 1111 13445557999999999
Q ss_pred EEEeC-----HHHHHHHHH-HHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 577 IIRDD-----VDILVKIKS-ITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 577 i~~d~-----~~~~~~~~~-~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
++.-. ...+..+.. ..+.--|.+.++..- -+.+++++-.+
T Consensus 282 ~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df---~~~~Rfv~i~r 327 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDF---AGRPRFVIIHR 327 (328)
T ss_pred EEEecccccCcHHHHHHHHhchhhccchhheeecc---cCCcceEEEEe
Confidence 99632 223344333 244444555553211 23556665443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=88.95 E-value=2.8 Score=46.05 Aligned_cols=125 Identities=11% Similarity=0.160 Sum_probs=70.4
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CCCccceeeecccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIHADSIF 550 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp~t~Dl~H~~~lf 550 (637)
++|||++||+|.|+..|+.+. ..|+.+|..+..+..+.+. |+ +-.+. |. +.+.. .-..||+|-+|=
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~DP-- 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVNP-- 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEECC--
Confidence 589999999999999998764 3566777766677666543 22 11111 11 11111 113488877642
Q ss_pred ccCCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCceeE---EeccCCCCCCcceEEEE
Q 006633 551 SLYKDRCEM-EDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEGR---IADHENGPRQREKILFA 617 (637)
Q Consensus 551 s~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~ 617 (637)
.|..+ +.++-.+. -|+|++.++++-+.. ..+-++.+ . .|++. .+|-=.....=|-|.+.
T Consensus 309 ----Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~~~~~~DmFPqT~HvE~v~ll 372 (374)
T TIGR02085 309 ----PRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIERVQLFDMFPHTSHYEVLTLL 372 (374)
T ss_pred ----CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEEEEEEeccCCCCCcEEEEEEE
Confidence 23222 33333333 479999999996655 44555555 2 47665 33433333333544443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.65 Score=46.80 Aligned_cols=134 Identities=17% Similarity=0.253 Sum_probs=82.3
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHH----HHhhcccc----hhhccccc-------cCCCCCccce
Q 006633 480 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGV----IYERGLIG----TYQNWCEA-------MSTYPRTYDL 543 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~eRgl~~----~~~~wce~-------~~~yp~t~Dl 543 (637)
.||.+|+|+|--|++++.. |- +---|+|...+.+.- +.+.|+.- +.-|-++. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999988888764 43 234677766455433 34566622 11222222 2235689998
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE------------------------eC---HHHHHHHHHHHhcCC
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR------------------------DD---VDILVKIKSITDGME 596 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~------------------------d~---~~~~~~~~~~~~~~~ 596 (637)
|-|..++-.-.- ...+-+|.+..|+|+|||.+++- |. ..-++.|.+++..-.
T Consensus 106 i~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 666444432221 22368999999999999999995 11 114466777777766
Q ss_pred ceeEEeccCCCCCCcceEEEEEe
Q 006633 597 WEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 597 W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
+.... .-+-| ...++||++|
T Consensus 185 L~l~~--~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEE--DIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccCc--ccccC-CCCeEEEEeC
Confidence 65432 11223 2478999887
|
The function of this family is unknown. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.51 E-value=1.9 Score=45.94 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHhcccCCC---CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEE
Q 006633 200 GADAYIDDIGKLINLKDGS---IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGV 270 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~---~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~ 270 (637)
+.-.|+..|.+++...... .-++||||+|....-..|..+ .++++|+++..+..++.......+. .+.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 3456787888887643322 358999999988665555433 4566666554444444333322122 244433
Q ss_pred ecccc-----CCCCCCCeeEEEecccc
Q 006633 271 MASIR-----LPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 271 ~d~~~-----Lpfpd~sFDlV~~s~~L 292 (637)
..... +.-++..||+..|+.-|
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 32111 11234689999999855
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.87 Score=42.09 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHhhcC--CEEEEcCc
Q 006633 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAP 248 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--v~~vdisp 248 (637)
++||+|||.|.++..+++.+ ..++.+.|
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~ 30 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEP 30 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEec
Confidence 48999999999999988773 23555533
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.33 Score=50.81 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
..+|||+|||+|.++.+|+++.- .|+.+|..+.+++.+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 56899999999999999988743 567777777888888775
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.4 Score=41.70 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=66.9
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc---C-CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCee
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFD 284 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~---~-v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp----fpd~sFD 284 (637)
++..++ +||=+|+.+|+....++.- | +.++.+++.... ..+..|.+|. ++.-...|+ +.| .-=...|
T Consensus 73 pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-Cceeeeccc-CCcHHhhhhccccc
Confidence 344555 9999999999887777664 4 788999996655 5666777664 332233333 333 1124589
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.--+ -+. +.+.+..++...||+||+++++.
T Consensus 148 viy~DVA---Qp~-Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 148 VIYQDVA---QPN-QAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEEecC---Cch-HHHHHHHHHHHhcccCCeEEEEE
Confidence 9987321 121 45667888999999999988874
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=88.00 E-value=4 Score=43.12 Aligned_cols=97 Identities=9% Similarity=0.165 Sum_probs=52.9
Q ss_pred CCEEEEECCCCchHHHHHhh-c---C--CEEEEcCccccHHHHHHHHHH-------cCCCeEEEEeccccCCCCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMS-R---N--ILAVSFAPRDTHEAQVQFALE-------RGVPALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~---~--v~~vdisp~Dls~a~i~~A~e-------rg~~~~~~~~d~~~Lpfpd~sFDl 285 (637)
..+|+=||+|.=-++..+.. + + +..+|+++ +.++.+++ -+....|..+|....+..-..||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~-----~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP-----EANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSH-----HHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 45999999997766655443 3 3 34555544 33333321 134567887787766655568999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+..... ....++...++..+.+.++||..+++..
T Consensus 196 V~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9986544 4444478899999999999999999974
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.78 E-value=5.9 Score=40.35 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=93.2
Q ss_pred cccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhh--hcCCCeE
Q 006633 424 LTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAA--LVDDPLW 501 (637)
Q Consensus 424 ~~~wp~rl~~~p~~i~~~~~~g~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~--l~~~~v~ 501 (637)
+.+|-++.+-+- ..+..+.|.+++-.=..+.+.+.. . -.+++|+|+|-|-=|-= +...++-
T Consensus 31 L~~wN~~~NLt~---------------~~~~~e~~~rHilDSl~~~~~~~~-~-~~~~~DIGSGaGfPGipLAI~~p~~~ 93 (215)
T COG0357 31 LLKWNKAYNLTA---------------IRDPEELWQRHILDSLVLLPYLDG-K-AKRVLDIGSGAGFPGIPLAIAFPDLK 93 (215)
T ss_pred HHHhhHhcCCCC---------------CCCHHHHHHHHHHHHhhhhhcccc-c-CCEEEEeCCCCCCchhhHHHhccCCc
Confidence 567777775321 345578899887543333332222 1 58999999997733332 3333332
Q ss_pred EEEeccCCC-Ccchh-HHHHhhcc--cchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006633 502 VMNTVPVEA-KINTL-GVIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 577 (637)
Q Consensus 502 ~mnv~~~~~-~~~~l-~~~~eRgl--~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i 577 (637)
.-++.... ..+.| .++.|=|| +.++|.--|.|..=++-||+|=| .+-+++..++-=.-.+|++||.++
T Consensus 94 -vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 94 -VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcch
Confidence 12222222 11223 23445566 44555444444431111999887 222444444444479999999875
Q ss_pred ---EEeCHHHHHHHHHHHhcCCceeEEeccCCCCCC-cceEEEE
Q 006633 578 ---IRDDVDILVKIKSITDGMEWEGRIADHENGPRQ-REKILFA 617 (637)
Q Consensus 578 ---~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~-~~~~l~~ 617 (637)
+.--.+++..+++....+.+.+..+..-.-|.. .++.|+.
T Consensus 166 ~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 166 AYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVI 209 (215)
T ss_pred hhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEE
Confidence 345566888888888888888876543333322 3444443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.33 E-value=3.3 Score=45.23 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=73.1
Q ss_pred ecCCCCCCCcccHHHHHHHHHHHh--cccC--CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH
Q 006633 189 SFPGGGTMFPRGADAYIDDIGKLI--NLKD--GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL 260 (637)
Q Consensus 189 ~Fpg~g~~f~~g~~~~i~~L~~lL--~~~~--g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~ 260 (637)
-+..|+.+|.+. |++ +..+.+ +... ...++||-+|.|.|.-++.|.+. .++-+|++|.+++-+.-..+.
T Consensus 259 LYldG~LQfsTr-De~--RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 259 LYLDGGLQFSTR-DEY--RYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred EEEcCceeeeec-hhh--hhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 367777777554 333 122222 1111 23468999999999999999987 466677766544433211111
Q ss_pred H---cC----CCeEEEEeccccC-CCCCCCeeEEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 261 E---RG----VPALIGVMASIRL-PYPSRAFDMAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 261 e---rg----~~~~~~~~d~~~L-pfpd~sFDlV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. .+ +.+.+...|+... .-..+.||.|+.-. ..+-.+. .-..+..-+.|.|+++|.+++...
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 1 11 2244444443222 22356899998632 1111110 223567778899999999999743
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=86.50 E-value=0.92 Score=47.10 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=66.5
Q ss_pred cCCCCCceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHH----Hhhcc---cchhh-ccc-cccCC-
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVI----YERGL---IGTYQ-NWC-EAMST- 536 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~----~eRgl---~~~~~-~wc-e~~~~- 536 (637)
|.+ ...|++.|.|.|++..+|+. . .|++.-+ ++.....+ .+-|| +.+.| |.| +.|..
T Consensus 38 i~p---G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 38 IRP---GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp --T---T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCC---CCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 555 77999999999999999974 2 3444443 22333333 33455 44555 888 56732
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcc-cCCcEEEE-EeCHHHHHHHHHHHhcCCcee
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRIL-RPEGSVII-RDDVDILVKIKSITDGMEWEG 599 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiL-rPgG~~i~-~d~~~~~~~~~~~~~~~~W~~ 599 (637)
....+|.|-. +-=+--..+--+-++| ||||.+.. +-..+++.+.-+.++...|.-
T Consensus 110 ~~~~~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3477887766 2222236777888999 99999877 456666666666666666754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.59 Score=49.20 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=57.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcccccc-CCCC-CccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM-STYP-RTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~-~~yp-~t~Dl~H~~~lfs~~~~ 555 (637)
--.++|+|||.| .++...|. .-+++-|....-++.+-.-|--.+ -.|.++ .+|+ .+||..-...+-+.+..
T Consensus 46 gsv~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~--~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNV--CRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCcee--ehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 667999999976 45554442 122333433222222222221111 112222 2343 78998666666666778
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEE
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++....+|-|+-|+|||||...|.
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 888999999999999999996664
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=86.27 E-value=2.3 Score=43.49 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=85.0
Q ss_pred CceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCCCcccee--eecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI--HADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp~t~Dl~--H~~~ 548 (637)
....||-.||..|....++.+ . .|+.+.+.|.... +.+.++-.|-- |.++.| .++|..|-++ ..|-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDV 146 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhcccccccE
Confidence 467999999999999998864 3 4689999998776 78888888865 667765 3355444332 2444
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCcee-EEeccCCCCCCcceEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 617 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 617 (637)
+|..-..+-..+.+++-+..-||+||+++|.- ..++...-.+.++.-..+. ...+.| |+.++.++|.
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~dH~~vv 224 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERDHAMVV 224 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTTEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCCcEEEE
Confidence 55544445556688888999999999999962 2233333333344333444 234455 5566666654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=6.6 Score=42.77 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=60.4
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC--CCccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~~~ 554 (637)
...+|||+||..|||.-.|.+++. .|+.+|.. .+-+.+.+-+-+-.+.. ..|..- ++.+|++-||-+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv----- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV----- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc-----
Confidence 467999999999999999999985 56666754 45555555555443321 122223 477999988322
Q ss_pred CCcCHHHHHHHHhhcccCC--cEEEEE
Q 006633 555 DRCEMEDVLLEMDRILRPE--GSVIIR 579 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPg--G~~i~~ 579 (637)
|.-..++-=|-++|.-| ..+|+.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 33446666678888776 578886
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=86.23 E-value=0.96 Score=41.09 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=25.2
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFA 247 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdis 247 (637)
....+|||||+|.+.--|.+.|..+.+++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccc
Confidence 44799999999999999988898888883
|
; GO: 0008168 methyltransferase activity |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=86.10 E-value=5.6 Score=38.78 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=69.7
Q ss_pred ECCCCchHHHHHhhc-----CCEEEEcCccccH-------HHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEe
Q 006633 225 TGCGVASWGAYLMSR-----NILAVSFAPRDTH-------EAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHC 288 (637)
Q Consensus 225 IGCGtG~~a~~La~~-----~v~~vdisp~Dls-------~a~i~~A~erg~~~~~~~~d~~~Lp----fpd~sFDlV~~ 288 (637)
||=|.=+|+..|++. ++++++++..+.- ...++.-++.|+.+.+. .|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566777888888876 4566666432111 11222223445555544 3555553 35688999998
Q ss_pred ccccccCCcC-----------CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhcee
Q 006633 289 SRCLIPWGQY-----------ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 289 s~~L~h~~~~-----------d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
++-......+ -...++..+.++|+++|.+.++..... .+.. |. ++.+|+..++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---py~~-----------W~-i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---PYDS-----------WN-IEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---CCcc-----------cc-HHHHHHhcCCE
Confidence 7643221110 233578899999999999999853111 0111 22 66778877775
Q ss_pred eec
Q 006633 358 KLI 360 (637)
Q Consensus 358 ~v~ 360 (637)
.+.
T Consensus 147 l~~ 149 (166)
T PF10354_consen 147 LVR 149 (166)
T ss_pred EEE
Confidence 543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=85.73 E-value=0.82 Score=47.46 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=32.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
...+|||+|||.|.+...|.++.. .|+.+|..+.+++.+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~ 70 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDD 70 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence 367999999999999999998743 455566666777777664
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=85.68 E-value=4.4 Score=42.40 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=55.5
Q ss_pred CEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEecccc
Q 006633 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSRCL 292 (637)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----pfpd~sFDlV~~s~~L 292 (637)
.+||..|+| .|..+..+++. ++.++.+ +.++...+.+++.+....+...+ ... ....+.+|+|+...
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~---~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~-- 240 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAV---DIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFV-- 240 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECC--
Confidence 478888876 47777777765 6665555 33445555665555433222111 000 12346799988532
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.....+.++.+.|+++|.++..+.
T Consensus 241 ------g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 ------GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEECC
Confidence 123478889999999999998753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=85.21 E-value=0.63 Score=45.21 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCCeeEEEeccccccCCcC---------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQY---------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~---------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++||.+.|..+++|..-. -..+.+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 4679999998888775411 344788999999999999999987
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.80 E-value=4.5 Score=44.90 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=61.0
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHH----HHHHHcCC-CeEEEEeccccCC---CCCC
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQV----QFALERGV-PALIGVMASIRLP---YPSR 281 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i----~~A~erg~-~~~~~~~d~~~Lp---fpd~ 281 (637)
+.+..+.+|||+.+-.|.=+.+++.. |++ +.. |.....+ +.+.+-|+ +......|...+| |+.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I-~An---D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVI-FAN---DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceE-Eec---ccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-
Confidence 34555669999999999544444432 432 222 3232322 23333454 3555666666555 454
Q ss_pred CeeEEE----eccccccCCcC----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAH----CSRCLIPWGQY----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~----~s~~L~h~~~~----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||-|+ |+..-.-+.+. -..++|..+...+++||+|+.++-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 899998 44411011110 244688888999999999999964
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=84.73 E-value=5.8 Score=43.26 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=59.1
Q ss_pred CCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-----C-CC-CCCCeeEEEe
Q 006633 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----L-PY-PSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-----L-pf-pd~sFDlV~~ 288 (637)
+.+||.+|||. |..+..+++. +. .++.+ +.++...+.+++.+ .+.+....... + .+ ....+|+|+.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~---~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAI---DRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 34899999987 7787778776 54 24444 33456666776663 12222111110 1 12 2346899986
Q ss_pred cccc-------ccC-------CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCL-------IPW-------GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L-------~h~-------~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-.- ++. .. +....+.++.+.|+|+|.+++.+.
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLET-DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCccccccccccccccccccc-CchHHHHHHHHHhccCCEEEEEcC
Confidence 4211 011 11 446688999999999999999853
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=84.70 E-value=6.2 Score=39.85 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=66.8
Q ss_pred EEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCC-CeeEEEecccccc
Q 006633 222 AIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSR-AFDMAHCSRCLIP 294 (637)
Q Consensus 222 VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~-sFDlV~~s~~L~h 294 (637)
|.||||--|.+..+|.+++ +.++|+.+.-+..+....+. .+ ..+.+..+|... +++.+ ..|.|+...+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH-
Confidence 6899999999999999985 56677766555544444433 33 236667666433 23333 378888765331
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecc
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
. -...+|++....++..-.|++.-. . ....++......+|..+.+
T Consensus 78 -~--lI~~ILe~~~~~~~~~~~lILqP~------------~-------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 78 -E--LIIEILEAGPEKLSSAKRLILQPN------------T-------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp -H--HHHHHHHHTGGGGTT--EEEEEES------------S--------HHHHHHHHHHTTEEEEEE
T ss_pred -H--HHHHHHHhhHHHhccCCeEEEeCC------------C-------ChHHHHHHHHHCCCEEEEe
Confidence 1 244567777777777677777521 1 1344777888889977764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=84.52 E-value=9.1 Score=40.36 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=71.5
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcc---hhHHHHhhcc-------cchhhccccccCC--------CC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN---TLGVIYERGL-------IGTYQNWCEAMST--------YP 538 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~---~l~~~~eRgl-------~~~~~~wce~~~~--------yp 538 (637)
.--+||==|||+|-.|--++.++..+-. .+-+-- ...+|+.... ..-.|.||...+. +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~g---nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQG---NEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEE---EEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999875421 122211 1234444321 2344555432222 22
Q ss_pred ----C-----ccceeeeccccc-cCCCC------------------cCHHHHHHHHhhcccCCcEEEE--------EeC-
Q 006633 539 ----R-----TYDLIHADSIFS-LYKDR------------------CEMEDVLLEMDRILRPEGSVII--------RDD- 581 (637)
Q Consensus 539 ----~-----t~Dl~H~~~lfs-~~~~~------------------c~~~~~l~e~dRiLrPgG~~i~--------~d~- 581 (637)
. .=+|-.+.|=|. .|... -++-++|-.+-++|||||++|= .+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0 111212223332 22221 1355889999999999997663 233
Q ss_pred ------HH-HHHHHHHHHhcCCceeEE
Q 006633 582 ------VD-ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 582 ------~~-~~~~~~~~~~~~~W~~~~ 601 (637)
++ .++.|+++++.+.|+...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 33 679999999999999875
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=84.39 E-value=4.6 Score=38.40 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHc----CC--CeEEEEeccccCC--CCCCCeeEEEeccccccCCcC-------CHHHHHHHHHhcccCC
Q 006633 250 DTHEAQVQFALER----GV--PALIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQY-------ADGLYLIEVDRVLRPG 314 (637)
Q Consensus 250 Dls~a~i~~A~er----g~--~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~~~-------d~~~~L~ei~RvLKPG 314 (637)
|+.+.+++..+++ +. .+.+...+-+.+. .+.+.+|+|+.+....+-.+. .--.+++.+.++|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 5555555555433 22 3666655555554 233589999998766443321 1236899999999999
Q ss_pred eEEEEEeC
Q 006633 315 GYWILSGP 322 (637)
Q Consensus 315 G~Lvls~p 322 (637)
|.+.+...
T Consensus 86 G~i~iv~Y 93 (140)
T PF06962_consen 86 GIITIVVY 93 (140)
T ss_dssp EEEEEEE-
T ss_pred CEEEEEEe
Confidence 99999864
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.31 E-value=9.3 Score=43.61 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----C--CEEEEcCccccHHHHHHHHHH----cCCC--eEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----N--ILAVSFAPRDTHEAQVQFALE----RGVP--ALI 268 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~--v~~vdisp~Dls~a~i~~A~e----rg~~--~~~ 268 (637)
....++.+.+++...+.. +|.|..||+|++.....+. . +...+. +......+.|+- ++++ +..
T Consensus 171 P~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGq---E~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 171 PREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQ---EINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred hHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEE---eCCHHHHHHHHHHHHHhCCCccccc
Confidence 355677788887654444 8999999999876554332 2 222222 333344444432 2333 455
Q ss_pred EEeccccCCC-----CCCCeeEEEeccccc--cCCcC---------------------CHHHHHHHHHhcccCCeEEEEE
Q 006633 269 GVMASIRLPY-----PSRAFDMAHCSRCLI--PWGQY---------------------ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 269 ~~~d~~~Lpf-----pd~sFDlV~~s~~L~--h~~~~---------------------d~~~~L~ei~RvLKPGG~Lvls 320 (637)
...+...-|. ..+.||.|+++.-+. .|... ....+++.+.+.|+|||...++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 5555444442 336799999865441 12110 2357899999999999977777
Q ss_pred eC
Q 006633 321 GP 322 (637)
Q Consensus 321 ~p 322 (637)
.|
T Consensus 326 l~ 327 (489)
T COG0286 326 LP 327 (489)
T ss_pred ec
Confidence 65
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.29 E-value=7.8 Score=40.36 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHH------HH-HcCCCeEEEEecccc---CCCCCCC-ee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQF------AL-ERGVPALIGVMASIR---LPYPSRA-FD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~------A~-erg~~~~~~~~d~~~---Lpfpd~s-FD 284 (637)
..+||++|.|+|.-+...+.. .+...|.. +.-...... +. +.+..+.+...+-.. ..+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~--~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLP--KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCch--hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457999999999666655553 33333331 222111111 11 112233333222111 1111222 99
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|+++.|+.+-. ..+.++.-+...|-.+|.+++..+
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999995555 678888889999999997777654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.94 E-value=4.4 Score=42.15 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-----------CCeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----------VPALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-----------~~~~~~~~d~~~ 275 (637)
.|.+.+.++.+...+|||.=+|.|..+..++.+|..++-+...-...+.++...++. ..+.+...+...
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 466666666655458999999999999999999866655533333333444443331 123444444322
Q ss_pred C-CCCCCCeeEEEeccccc
Q 006633 276 L-PYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 276 L-pfpd~sFDlV~~s~~L~ 293 (637)
. .-...+||+|+.-..+-
T Consensus 157 ~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred HHhhCCCCCcEEEECCCCC
Confidence 2 21234799999877663
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.9 Score=43.52 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHHHHHHhhcccCCcEEEEEeCH
Q 006633 560 EDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 560 ~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
..+|.|.--+||+||.++..-++
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeH
Confidence 37899999999999999875333
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.02 E-value=8.8 Score=39.68 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=71.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCC----Cccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYP----RTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp----~t~Dl~H~~~lfs 551 (637)
..+++||+|+-+|||--.|.+++. --|..+|-..++|.-=+.... +-++ .-+-...-.| .-.|++-|+--|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~-E~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVL-ERTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEE-ecCChhhCCHHHcccCCCeEEEEeehh
Confidence 579999999999999999988754 122233333344433322222 0011 0000011111 2456777655443
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCceeEEe
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~~~ 602 (637)
.+..+|-.+..+|.|+|-++.- |. ..++.+|.+.++.+.|.+.-.
T Consensus 156 ------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 156 ------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3457899999999999988874 32 357889999999999998743
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.2 Score=45.73 Aligned_cols=97 Identities=14% Similarity=0.283 Sum_probs=67.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh---cccchhhccccccCCCC-Cccceeeeccccc-
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS- 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs- 551 (637)
..-.++|+||+.|-.+..|...+| --+.-.|.+-.|++-..+- +++-.|-.=-|-|..|- +++|||-. -.|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiis--Slsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIIS--SLSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhh--hhhh
Confidence 466899999999999999999987 3333345555677666554 55555544447777775 99998654 111
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.|. -+++--|...--+|+|.|.||-+
T Consensus 148 HW~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhh--ccCchHHHHHHHhcCCCccchhH
Confidence 122 34677788888899999999875
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=82.42 E-value=0.96 Score=46.67 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=31.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
....+|||+|||+|.+.+.|.++.- .|+.+|..+.+++.+.++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 4467999999999999999988742 245555555677766544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.06 E-value=17 Score=39.86 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=57.3
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhcCC------EEEEcCccccHHH---HHHHHHHcCCC--eEEEEeccccCC-----
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSRNI------LAVSFAPRDTHEA---QVQFALERGVP--ALIGVMASIRLP----- 277 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~~v------~~vdisp~Dls~a---~i~~A~erg~~--~~~~~~d~~~Lp----- 277 (637)
.+++. +|||+.+..|+=++.|++.-. .++.- |.... ++.....+-.. ..+...+....|
T Consensus 153 v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaN---D~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVAN---DVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEec---ccCHHHHHHHHHHHhccCCcceeeecccceeccccccc
Confidence 44544 999999999998888877511 22222 33322 33333333222 222222222222
Q ss_pred ----CCCCCeeEEEec-ccc------------cc-CCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 ----YPSRAFDMAHCS-RCL------------IP-WGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 ----fpd~sFDlV~~s-~~L------------~h-~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.....||-|+|- .|- -. |... -.-.+|.+..++||+||.++.++-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 233469999870 000 00 1110 123578899999999999999964
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 637 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-11 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 6e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 2e-06 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 3e-06 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 6e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-05 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-05 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 3e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 7e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 7e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 8e-05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 8e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 2e-04 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 3e-04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 4e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-04 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 81/601 (13%), Positives = 164/601 (27%), Gaps = 166/601 (27%)
Query: 81 HHQAPDPPPTLARVTY---IPPCDPKYVENVPCEDTHRSLK--FDRDRL--IYRERHCPE 133
HH D + Y + + +V+N C+D K ++ + I +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 134 KTELLKCRVPAPHGYTVPFRWPES--RQFAWYANVPHKELTVEKKNQNWV--RFQGDRFS 189
T L + E ++F V + N ++ +
Sbjct: 63 GTLRL---------FWTLLSKQEEMVQKFV---------EEVLRINYKFLMSPIK-TEQR 103
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
P T YI+ +L N D + N+ R
Sbjct: 104 QPSMMT------RMYIEQRDRLYN--DNQV----------------FAKYNV------SR 133
Query: 250 DTHEAQVQFALERGVPA-LIGVMASIRLPYPSRAFDMAHCSR-CLIPWGQYADGLYLIEV 307
+++ AL PA + + + + + D +V
Sbjct: 134 LQPYLKLRQALLELRPAKNVLI------------DGVLGSGKTWVA-----LDVCLSYKV 176
Query: 308 DRVLRPGGYWILSG----PPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 363
+ +W+ P E K + + S + I + + + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELR 235
Query: 364 DLAIWQKPTNHVHC------IANRRVFKKPRF---CK------------AQDPDMAWYTK 402
L + + +C + N + + F CK +
Sbjct: 236 RLLKSKP---YENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 403 METCLTPLPEVSNIKEIAGGQLTKWPE-RLNAIPPRVNRGA--VDGVTAEMFREDTALWK 459
++ L +K + L K+ + R +P V + AE R+ A W
Sbjct: 291 LDHHSMTLTP-DEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 460 --KRVTYYK-------SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD---P------LW 501
K V K S++ +P YR + D L F P +W
Sbjct: 346 NWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDR---LSVF----PPSAHIPTILLSLIW 396
Query: 502 V-MNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEME 560
+ V +N L ++ L+ + E+ + P Y + ++ +
Sbjct: 397 FDVIKSDVMVVVNKL---HKYSLVE--KQPKESTISIPSIYLELKVKL-----ENEYALH 446
Query: 561 DVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620
+++ I + D D++ D + I H E++
Sbjct: 447 RSIVDHYNIPKT------FDSDDLI---PPYLDQY-FYSHIGHHLKNIEHPERMTLFRMV 496
Query: 621 Y 621
+
Sbjct: 497 F 497
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 23/158 (14%)
Query: 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILA 243
+ G D D++ L++++ G +D GCG+ L + +
Sbjct: 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTG 89
Query: 244 VSFAPRDTHEAQVQFALER----GVPALIG--VMASIRLPYPSRAFDMAHCSRCLIPWGQ 297
+ QV A R G+ + ++ LP+ +FD L
Sbjct: 90 I-----SISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD 144
Query: 298 YADGLYLIEVDRVLRPGGY-----WILSGPPVNWESHW 330
L E+ RVLRPGG ++L P +
Sbjct: 145 RGR--ALREMARVLRPGGTVAIADFVLLAPVEGAKKEA 180
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 5/158 (3%)
Query: 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTH 252
M + K N + +D G G + + +
Sbjct: 2 MKTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLK 60
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLR 312
+A+ F+ E I +LP+ + + + + + E+ RVL+
Sbjct: 61 KAE-NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119
Query: 313 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 350
PGG ++ E + KG + + G + I
Sbjct: 120 PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVI 157
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 27/156 (17%)
Query: 193 GGTMFPRGADAY----------IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N 240
G +++ Y ++ I L+NL GS D G G + L ++
Sbjct: 1 GMSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGS--VIADIGAGTGGYSVALANQGLF 58
Query: 241 ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYA 299
+ AV + Q A+ V G L P ++ D + +
Sbjct: 59 VYAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILAIHHFSHLE 111
Query: 300 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR 335
E+ R++R G +L+ + + W
Sbjct: 112 KSF--QEMQRIIRDGTIVLLT---FDIRLAQRIWLY 142
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 26/150 (17%)
Query: 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEA 254
P +A + + L D + D GCG +L I + D
Sbjct: 28 PGSPEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI-----DLFPD 80
Query: 255 QVQFALER----GVPALIG-VMASIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVD 308
++ E + + S+ LP+ + D+ + G + E
Sbjct: 81 FIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG---FERGMNEWS 137
Query: 309 RVLRPGGY-------WILSGPPVNWESHWK 331
+ L+ GG+ W S P E W
Sbjct: 138 KYLKKGGFIAVSEASWFTSERPAEIEDFWM 167
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 27/181 (14%), Positives = 48/181 (26%), Gaps = 29/181 (16%)
Query: 195 TMFPRGADAYIDDIGKLIN-----------LKDGSIRTAIDTGCGVASWGAYLMSR--NI 241
+ +G +I+ G +D G G W +L S I
Sbjct: 7 KAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQI 66
Query: 242 LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI--PWGQYA 299
+ A R A+ V G + L + + LI G+
Sbjct: 67 EGLEPATRLVELARQTHP---SVTFHHGTIT--DLSDSPKRWAGLLAWYSLIHMGPGELP 121
Query: 300 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG-----WNRTTEDLKS--EQNGIETIAR 352
D L+ + + GG ++S + +L E G + +
Sbjct: 122 D--ALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179
Query: 353 S 353
Sbjct: 180 H 180
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 28/173 (16%)
Query: 224 DTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPS 280
+ GCG +++ ++ A D A R G P + +
Sbjct: 49 ELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRPVRTMLFHQLDAI--- 100
Query: 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG---WNRTT 337
A+D CL+ + L + R L+PGG + S E K +N +
Sbjct: 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPS 160
Query: 338 ED-LKS--EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKP 387
E+ L++ + G + Q+ +H +KP
Sbjct: 161 EEWLRARYAEAGTWASVAVESS------EGKGFDQELAQFLHVSV-----RKP 202
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA 254
A+ + G+ ++ GCG+ + L I ++ +P +A
Sbjct: 20 EQAETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 255 QVQFALERGVPALIGVMASI-RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRP 313
+ + + G+ + + A+I LP+ +FD L + L + +VL+P
Sbjct: 78 R-ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALK--SLKKVLKP 134
Query: 314 GG 315
GG
Sbjct: 135 GG 136
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 20/172 (11%)
Query: 174 EKKNQNWVRFQGDRFS--FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVAS 231
+N+ F+ + F P + + + + NL + S D GCG
Sbjct: 2 SNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--LIADIGCGTGG 59
Query: 232 WGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALI-GVMASI-RLPYPSRAFDMA 286
L + + F + A + G+ + G++ S+ LP+ + D+
Sbjct: 60 QTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGLQNRVTGIVGSMDDLPFRNEELDLI 118
Query: 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGY-------WILSGPPVNWESHWK 331
+ G L E + L+ GGY W P W
Sbjct: 119 WSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM 167
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 14/178 (7%)
Query: 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPR 249
T+F ++I + G+ ID G G + L + +I A+ F+
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSKH 77
Query: 250 DTHEAQVQFALERGVPALIG-VMASI-RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEV 307
A + + + I V + +P D+ + W A E+
Sbjct: 78 MNEIAL-KNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFR--EI 134
Query: 308 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC---WKKLIQK 362
R+L+ GG + G N E + ++ ++ +
Sbjct: 135 YRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDE 192
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 224 DTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPS 280
D GCG G YL + ++L D + +A + P V+ +
Sbjct: 52 DAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQD-FPEARWVVGDLSVDQISE 105
Query: 281 RAFDMAHCSRCLIPWGQYAD-GLYLIEVDRVLRPGGYWILS-GPPVNW 326
FD+ + ++ + L + R L G ++ G W
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGW 153
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
Query: 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278
+ G +L S + AV + +A+ Q A E+GV
Sbjct: 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQEKGVKITTVQSNLADFDI 90
Query: 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTE 338
+ A++ C +P +V + L+PGG +IL G + G + +
Sbjct: 91 VADAWEGIVSIFCHLPS--SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLD 148
Query: 339 DLKSE 343
L
Sbjct: 149 LLPKL 153
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 224 DTGCGVASWGAYL--MSRNILAVSFAPRDTHEAQVQFALERGVPALIG-VMASI-RLPYP 279
D GCG L + V + +Q ERG + + + LP+
Sbjct: 59 DVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPFE 113
Query: 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS--GPPVNWESHW 330
+ F+ L + L E+ RVL+ GY ++ GP +
Sbjct: 114 NEQFEAIMAINSLEWTEEPLRALN--EIKRVLKSDGYACIAILGPTAKPRENS 164
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 8e-05
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 12/124 (9%)
Query: 211 LINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGV 270
L D +D GCG + +F D + ++ A +R P +
Sbjct: 78 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRY-PQVTFC 135
Query: 271 MASIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESH 329
+AS LP+ + D E+ RV++PGG+ I + P
Sbjct: 136 VASSHRLPFSDTSMDAIIRIYAPCKAE---------ELARVVKPGGWVITATPGPRHLME 186
Query: 330 WKGW 333
KG
Sbjct: 187 LKGL 190
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 214 LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIG- 269
L D + +T +D GCG Y +L + D E + A + ++
Sbjct: 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCY 94
Query: 270 VMASIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP-PVNWE 327
+I + A+++ S L + D +V L+ G +I S PV
Sbjct: 95 EQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICK--KVYINLKSSGSFIFSVEHPVFTA 152
Query: 328 SHWKGW 333
+ W
Sbjct: 153 DGRQDW 158
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 16/136 (11%)
Query: 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR-- 249
G + G +A I I L + S +D G G G + +
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSG---LGG--GCM-YINEKYGAHTH 82
Query: 250 --DTHEAQVQFALER-GVPALIGVM-ASIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYL 304
D V A ER I I +P FD+ + ++
Sbjct: 83 GIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLF 142
Query: 305 IEVDRVLRPGGYWILS 320
+ + L+P G +++
Sbjct: 143 QKCYKWLKPTGTLLIT 158
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVM-ASI- 274
+D GCG + + +L + + + + A G I A +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLD 99
Query: 275 RLPYPSRAFDMAHCSRCLIPWGQYADGL--YLIEVDRVLRPGGYWILS 320
+L P +FD+A+ S L Y + + V + L PGG+++ S
Sbjct: 100 KLHLPQDSFDLAYSSLAL----HYVEDVARLFRTVHQALSPGGHFVFS 143
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA 259
+ I+ + L+ +D CGV + L ++ V D E ++ A
Sbjct: 22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGV-----DISEDMIRKA 76
Query: 260 LER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGG 315
E V + +L + + FD ++ + EV RVL+P G
Sbjct: 77 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
Query: 316 YWILSGPPVNWESHW 330
+I+ +
Sbjct: 137 KFIMYFTDLRELLPR 151
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHE 253
F AY+ ++ + L ++ G G G + + + + V + E
Sbjct: 26 RWFLVHRFAYLSELQAVKCLLPEG--RGVEIGVGT---GRFAVPLKIKIGV-----EPSE 75
Query: 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYAD--GLYLIEVDRVL 311
+ A +RGV L G LP +FD A + + D L E R+L
Sbjct: 76 RMAEIARKRGVFVLKGTAE--NLPLKDESFDFALMVTTI----CFVDDPERALKEAYRIL 129
Query: 312 RPGGYWILSGPPVNWESHWKGW 333
+ GGY I+ + ES
Sbjct: 130 KKGGYLIVGIV--DRESFLGRE 149
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 25/142 (17%)
Query: 197 FPRGADAYIDDIGKLIN--------------LKDGSIRTAIDTGCGVASWGAYLMSRNIL 242
+ + A A+ID + + +D GCG L R I
Sbjct: 17 WHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE 76
Query: 243 AVSFAPRDTHEAQVQFALERGVPALIGV---MASIRLPYPSRAFDMAHCSRCLIPWGQYA 299
AV D V A G + + + +D+ + L +
Sbjct: 77 AVGV---DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFAL----LHQ 129
Query: 300 DGLYLI-EVDRVLRPGGYWILS 320
D + L+ + +L PGG ++
Sbjct: 130 DIIELLSAMRTLLVPGGALVIQ 151
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 10/140 (7%)
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RG+ + + R +D GCG + I ++ D +E ++F
Sbjct: 22 RGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKF 78
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL--IPWGQYADGLYLIEVDRVLRPGGY 316
E + P + D S + + + + L ++ Y
Sbjct: 79 C-EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFE--LLSLCYSKMKYSSY 135
Query: 317 WILSGPPVNWESHWKGWNRT 336
++ P N S + N
Sbjct: 136 IVIESP--NPTSLYSLINFY 153
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 637 | |||
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.55 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.5 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.5 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.5 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.5 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.5 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.49 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.49 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.48 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.48 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.48 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.47 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.45 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.44 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.44 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.44 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.43 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.43 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.42 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.42 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.42 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.42 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.41 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.41 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.41 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.4 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.4 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.4 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.39 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.39 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.39 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.38 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.38 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.38 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.37 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.37 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.36 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.36 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.34 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.34 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.33 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.33 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.32 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.32 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.32 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.31 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.31 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.31 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.31 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.3 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.3 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.3 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.29 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.29 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.28 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.27 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.27 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.27 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.26 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.25 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.23 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.23 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.23 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.23 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.22 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.22 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.22 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.21 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.2 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.2 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.2 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.2 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.19 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.18 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.18 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.16 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.16 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.15 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.14 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.14 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.13 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.12 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.12 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.12 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.12 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.12 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.11 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.11 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.11 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.1 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.1 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.09 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.09 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.08 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.08 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.08 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.08 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.07 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.07 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.07 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.07 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.07 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.06 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.06 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.06 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.05 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.05 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.04 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.04 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.04 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.04 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.03 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.03 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.02 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.01 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.01 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.01 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.0 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.0 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.0 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.99 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.99 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.99 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.99 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.99 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.99 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.99 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.99 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.99 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.98 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.97 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.97 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.97 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.97 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.97 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.94 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.94 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.93 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.93 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.93 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.92 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.92 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.91 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.91 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.91 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.91 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.89 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.89 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.88 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.87 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.87 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.87 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.87 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.86 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.86 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.86 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.86 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.85 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.85 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.84 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.84 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.83 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.83 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.83 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.83 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.82 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.82 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.81 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.81 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.8 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.79 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.78 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.78 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.78 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.77 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.77 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.77 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.77 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.77 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.76 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.76 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.75 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.75 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.75 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.75 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.75 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.74 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.74 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.73 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.73 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.73 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.72 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.72 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.71 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.71 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.7 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.7 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.7 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.7 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.69 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.68 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.68 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.67 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.67 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.67 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.67 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.66 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.66 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.65 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.65 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.65 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.65 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.65 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.64 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.63 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.63 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.62 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.62 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.61 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.61 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.61 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.61 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.6 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.6 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.6 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.6 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.6 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.6 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.59 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.59 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.59 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.59 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.59 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.59 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.59 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.59 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.59 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.59 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.59 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.58 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.58 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.58 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.58 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.57 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.57 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.57 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.56 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.55 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.55 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.55 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.55 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.54 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.54 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.54 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.53 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.53 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.52 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.52 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.51 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.51 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.51 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.51 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.51 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.51 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.51 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.51 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.5 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.5 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.5 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.5 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.5 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.5 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.49 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.49 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.49 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.49 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.48 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.48 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.47 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.47 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.47 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.47 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.47 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.47 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.46 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.46 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.45 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.45 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.45 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.43 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.42 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.41 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.4 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.4 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.4 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.39 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.39 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.39 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.38 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.37 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.37 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.37 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.37 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.37 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.36 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.36 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.34 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.34 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.34 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.34 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.34 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.33 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.32 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.32 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.32 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.32 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.31 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.3 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.3 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.3 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.29 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.29 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.28 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.28 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.28 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.26 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.24 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.24 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.23 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.23 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.22 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.22 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.21 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.21 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.2 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.2 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.17 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.17 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.16 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.15 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.13 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.11 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.09 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.09 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.09 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.08 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.08 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.07 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.07 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.07 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.07 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.06 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.05 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.05 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.04 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.04 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.03 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.03 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.02 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.02 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.02 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.02 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.02 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.02 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.02 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.01 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.01 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.01 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.01 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.0 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.98 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.97 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.96 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.96 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.95 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.95 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.95 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 97.94 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.94 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.93 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.93 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.92 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.92 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.92 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 97.92 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.92 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.92 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.89 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.89 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.89 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.88 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.88 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.88 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 97.87 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.86 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.86 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.85 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.83 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.83 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.83 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.83 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.82 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.8 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.8 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.8 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.79 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.78 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.78 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.77 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 97.77 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.75 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.75 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.74 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.72 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.71 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.7 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.69 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.69 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.67 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.67 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.67 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.67 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.66 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.65 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.65 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 97.64 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 97.63 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.63 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.61 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.61 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.6 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.59 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.57 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 97.57 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.57 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.56 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.55 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.54 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.54 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.53 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.52 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.51 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.51 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.5 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.5 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.5 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.49 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.48 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.48 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.45 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.45 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.43 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.38 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.35 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 97.35 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.35 |
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=139.90 Aligned_cols=137 Identities=12% Similarity=0.012 Sum_probs=105.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
+.+|||+|||+|.++..|++++..++.+ |+++.+++.++++...+.+...+...+++++++||+|++..+++|+..+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEE---CCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 3489999999999999999986655565 6677888888888778899999999999999999999999999998755
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 299 d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+...+++++.++|||||.+++..+............. .......+.+..+++..+|+.+.
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVA--TAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSS--CEEECCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhh--hhccCCHHHHHHHHHHCCCcEEE
Confidence 8999999999999999999999754332221111000 00111234577888888997765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=148.85 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~ 281 (637)
.+.++.|.+..+ ...+|||||||+|.++..|++++..++++ |+++.|++.|++ ..++.+.+++++.+|++++
T Consensus 27 ~~l~~~l~~~~~----~~~~vLDvGcGtG~~~~~l~~~~~~v~gv---D~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 27 RALFRWLGEVAP----ARGDALDCGCGSGQASLGLAEFFERVHAV---DPGEAQIRQALR-HPRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHHHSS----CSSEEEEESCTTTTTHHHHHTTCSEEEEE---ESCHHHHHTCCC-CTTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHHHhcC----CCCCEEEEcCCCCHHHHHHHHhCCEEEEE---eCcHHhhhhhhh-cCCceeehhhhhhhcccCC
Confidence 445566665543 23489999999999999999987666666 667788877754 4578999999999999999
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|+|..++ ||. +...++.|+.|+|||||.|++...
T Consensus 99 sfD~v~~~~~~-h~~--~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 99 SVDVAIAAQAM-HWF--DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CEEEEEECSCC-TTC--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeeeh-hHh--hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999999999 777 688999999999999999999864
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=140.30 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=81.3
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc-----------------CCCeEEEEeccccCCCCC-
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER-----------------GVPALIGVMASIRLPYPS- 280 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er-----------------g~~~~~~~~d~~~Lpfpd- 280 (637)
+.+|||+|||+|..+..|++++..++++ |+++.+++.|+++ ..++.+.++|...+++++
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gv---D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEE---eCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 3499999999999999999987666666 6777777777654 246789999999998875
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++||+|++..+++|++.++...+++++.|+|||||++++.
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8999999999998887535667999999999999985444
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=133.36 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=104.7
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPY 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lpf 278 (637)
.+.+.+...++ .+|||+|||+|.++..+++.. ..++.+ |+++.+++.++++ + .++.+...+...+++
T Consensus 28 ~~~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 102 (219)
T 3dh0_A 28 KVLKEFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVYAI---DVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL 102 (219)
T ss_dssp HHHHHHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS
T ss_pred HHHHHhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC
Confidence 44455554444 499999999999999998763 333333 3344444444332 3 358899999999999
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceee
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 358 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~ 358 (637)
++++||+|+++.+++|+. +...+++++.|+|||||.+++..+....... ..........+.+..+.++.+|+.
T Consensus 103 ~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~ 175 (219)
T 3dh0_A 103 PDNTVDFIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERDK-----GPPPEEVYSEWEVGLILEDAGIRV 175 (219)
T ss_dssp CSSCEEEEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----SCCGGGSCCHHHHHHHHHHTTCEE
T ss_pred CCCCeeEEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEeccccccc-----CCchhcccCHHHHHHHHHHCCCEE
Confidence 999999999999998886 7999999999999999999998642221110 011111122356778888889986
Q ss_pred ecccC-----cEEEEeccC
Q 006633 359 LIQKK-----DLAIWQKPT 372 (637)
Q Consensus 359 v~~~~-----~~aIWqKP~ 372 (637)
+.... ...+.+|+.
T Consensus 176 ~~~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 176 GRVVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp EEEEEETTTEEEEEEECC-
T ss_pred EEEEeeCCceEEEEEEecc
Confidence 65311 245666664
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=136.25 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=108.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc--CCCeEEEEeccccCCCCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRLPYPSR 281 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er--g~~~~~~~~d~~~Lpfpd~ 281 (637)
.++.+.+.++ + +.+|||||||+|.++..|++++..++.+ |+++.+++.++++ ..++.+...+...++++++
T Consensus 43 ~~~~l~~~~~--~--~~~vLDiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 115 (242)
T 3l8d_A 43 IIPFFEQYVK--K--EAEVLDVGCGDGYGTYKLSRTGYKAVGV---DISEVMIQKGKERGEGPDLSFIKGDLSSLPFENE 115 (242)
T ss_dssp HHHHHHHHSC--T--TCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTT
T ss_pred HHHHHHHHcC--C--CCeEEEEcCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhcccCCceEEEcchhcCCCCCC
Confidence 3444555443 3 3499999999999999999997666666 6677888888776 3568899999999999999
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCC----chhhhHHhHhhHHHHHHHhcee
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR----TTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~----t~e~l~~~~~~ie~la~~l~w~ 357 (637)
+||+|++..+++|+. +...++.++.++|||||++++..+..........|.. ...........++.+++..+|+
T Consensus 116 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 193 (242)
T 3l8d_A 116 QFEAIMAINSLEWTE--EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFK 193 (242)
T ss_dssp CEEEEEEESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEE
T ss_pred CccEEEEcChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCE
Confidence 999999999998886 8999999999999999999998743221111110000 0000001124577888899998
Q ss_pred eecc
Q 006633 358 KLIQ 361 (637)
Q Consensus 358 ~v~~ 361 (637)
.+..
T Consensus 194 ~~~~ 197 (242)
T 3l8d_A 194 VVDG 197 (242)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=141.62 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC--CC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PY 278 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L--pf 278 (637)
.+...+.+...++... .+.+|||||||+|.++..|++++..++++ |+++.+++.+.++ +.+...+...+ ++
T Consensus 25 ~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~---~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 25 RELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKFCEGK---FNVVKSDAIEYLKSL 97 (240)
T ss_dssp HHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTCCEEEE---CSCHHHHHHHHTT---SEEECSCHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCCcEEEE---ECCHHHHHHHHhh---cceeeccHHHHhhhc
Confidence 4445555555554222 23589999999999999999887666666 6778888888776 66777777665 88
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccC-CCCchhhhHHhHhhHHHHHHHhcee
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG-WNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~-w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
++++||+|++..+++|+..++...+++++.|+|||||++++..+.......... |...........+.+..+.++.+|+
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFR 177 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCe
Confidence 899999999999999988545689999999999999999999874332111000 0000111111124567777788887
Q ss_pred ee
Q 006633 358 KL 359 (637)
Q Consensus 358 ~v 359 (637)
.+
T Consensus 178 ~~ 179 (240)
T 3dli_A 178 DV 179 (240)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=140.37 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=86.2
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lpfpd 280 (637)
+.+.+.+...++ .+|||||||+|.++..|++++..++.+ |+++.+++.|+++ + .++.+..+|...+|+++
T Consensus 27 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 27 AKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAF---DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHhCCCCC--CEEEEEeCCCCHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 445556555443 499999999999999999885444444 4455555555433 3 35888999999999999
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|+++.+++|+. +...+|.++.|+|||||+|++..+
T Consensus 102 ~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999999999998887 899999999999999999999753
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=142.69 Aligned_cols=148 Identities=9% Similarity=0.060 Sum_probs=101.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lp 277 (637)
++..+.+.+...+ ..+|||||||+|.++..|++++ ++++ |+++.+++.++++. ..+.+...+...++
T Consensus 81 ~~~~~l~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~~v-----D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 81 GSRNFIASLPGHG--TSRALDCGAGIGRITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHTSTTCC--CSEEEEETCTTTHHHHHTHHHHCSEEEEE-----ESCHHHHHHHHHHTTTSSEEEEEESCGGGCC
T ss_pred HHHHHHHhhcccC--CCEEEEECCCcCHHHHHHHHhhcCEEEEE-----eCCHHHHHHHHHHhccCCceEEEEccHHHCC
Confidence 3444444443333 4599999999999999988773 4455 44566677776654 35788888998999
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhcee
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
+++++||+|++..+++|+..++...++.++.|+|||||++++..+.......... ..........+.+..++++.+|+
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~ 231 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD--KEDSSLTRSDIHYKRLFNESGVR 231 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE--TTTTEEEBCHHHHHHHHHHHTCC
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec--ccCCcccCCHHHHHHHHHHCCCE
Confidence 9999999999999998886436889999999999999999998752211111000 00011111234577788888887
Q ss_pred eec
Q 006633 358 KLI 360 (637)
Q Consensus 358 ~v~ 360 (637)
.+.
T Consensus 232 ~~~ 234 (254)
T 1xtp_A 232 VVK 234 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=138.87 Aligned_cols=118 Identities=16% Similarity=0.243 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC---CCeEEEEecccc
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIR 275 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~ 275 (637)
+.....+.+.+.++..++ .+|||||||+|.++..|+++ +..++.+ |+++.+++.++++. ..+.+...|...
T Consensus 39 ~~~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 113 (266)
T 3ujc_A 39 GGLEATKKILSDIELNEN--SKVLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDILT 113 (266)
T ss_dssp THHHHHHHHTTTCCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHTCCSCTTEEEEECCTTT
T ss_pred chHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHhhcCCCeEEEECcccc
Confidence 344455566666654444 49999999999999999987 6666666 66778888888775 468899999999
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|+++++||+|++..+++|+...+...++.++.|+|||||.+++..+
T Consensus 114 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 114 KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999999999888433899999999999999999999875
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=132.46 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC----C------CeEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG----V------PALI 268 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg----~------~~~~ 268 (637)
.....+.+.+.+...++ .+|||||||+|.++..|++++ ..++.+ |+++.+++.|+++. . .+.+
T Consensus 14 ~~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 14 NQQRLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKSFEQITGV---DVSYSVLERAKDRLKIDRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTTCCEEEEE---ESCHHHHHHHHHHHTGGGSCHHHHTTEEE
T ss_pred hHHHHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHHHhhccccccCcceEE
Confidence 34445566666654443 499999999999999999874 344444 55556666665442 1 6788
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
...|...+++++++||+|+|..+++|+.+++...+++++.++|||||.++.+
T Consensus 89 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 8888888888889999999999998887423378999999999999966555
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=141.61 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHh----cccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----C--CCeEE
Q 006633 200 GADAYIDDIGKLI----NLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G--VPALI 268 (637)
Q Consensus 200 g~~~~i~~L~~lL----~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g--~~~~~ 268 (637)
.....++.+.+.+ ...+ +.+|||||||+|.++..|+++ +..++.+ |+++.+++.|+++ + ..+.+
T Consensus 62 ~~~~~~~~l~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~ 136 (297)
T 2o57_A 62 ASLRTDEWLASELAMTGVLQR--QAKGLDLGAGYGGAARFLVRKFGVSIDCL---NIAPVQNKRNEEYNNQAGLADNITV 136 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred HHHHHHHHHHHHhhhccCCCC--CCEEEEeCCCCCHHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHhcCCCcceEE
Confidence 3445556666666 4444 349999999999999999987 5544444 4455555555432 3 35889
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+|...+|+++++||+|++..+++|+. +...++.++.|+|||||.+++..+
T Consensus 137 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 137 KYGSFLEIPCEDNSYDFIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EECCTTSCSSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCcccCCCCCCCEeEEEecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999998887 799999999999999999999875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=141.55 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEe
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----G--VPALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~ 271 (637)
+..++.+..++......+.+|||||||+|.++..|+++ ++.++++ |+++.|++.|+++ + .++.+..+
T Consensus 54 ~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gv---D~s~~ml~~A~~~~~~~~~~~~v~~~~~ 130 (261)
T 4gek_A 54 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAI---DNSPAMIERCRRHIDAYKAPTPVDVIEG 130 (261)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEE---ESCHHHHHHHHHHHHTSCCSSCEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEE---ECCHHHHHHHHHHHHhhccCceEEEeec
Confidence 33344444444322223449999999999999999875 4455555 5566677666653 2 35788999
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|...+|++ .||+|+++.+++|+.+++...+|+++.|+|||||.|+++.+
T Consensus 131 D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 131 DIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp CTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 98888875 59999999999777753556799999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=137.35 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMAS 273 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~ 273 (637)
....++.+.+.+...++. +|||||||+|.++..|++. +..++.+ |+++.+++.|++ .+. ++.+..+|.
T Consensus 21 ~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 21 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGI---DMSSLFTAQAKRRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence 355667777777655544 9999999999999999876 4444443 444445444433 343 488999999
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+++ +++||+|+|..+++|+. +...+|+++.|+|||||.+++..+
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCc-CCCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecC
Confidence 98888 88999999999997777 789999999999999999999865
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=133.99 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=88.3
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMA 286 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV 286 (637)
+.+.+...+ +.+|||+|||+|.++..|++++..++.+ |+++.+++.++++.. .+.+..+|...++++ ++||+|
T Consensus 37 ~l~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v 110 (220)
T 3hnr_A 37 ILEDVVNKS--FGNVLEFGVGTGNLTNKLLLAGRTVYGI---EPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTI 110 (220)
T ss_dssp HHHHHHHTC--CSEEEEECCTTSHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEE
T ss_pred HHHHhhccC--CCeEEEeCCCCCHHHHHHHhCCCeEEEE---eCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEE
Confidence 334443344 3499999999999999999987766666 777788888877755 678888899999988 999999
Q ss_pred EeccccccCCcCCHHH--HHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWGQYADGL--YLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~--~L~ei~RvLKPGG~Lvls~p 322 (637)
++..+++|+. +... ++.++.|+|||||.+++..+
T Consensus 111 ~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 111 VSTYAFHHLT--DDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp EEESCGGGSC--HHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EECcchhcCC--hHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999998887 4555 99999999999999999975
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=133.69 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=84.3
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
+.+|||||||+|.++..|++++..++++ |+++.+++.|+++.. ++.+...+...+ +++++||+|++..+++|+.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~- 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID- 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEE---ESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEE---eCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-
Confidence 3489999999999999999885444444 556778878877654 688888888777 5788999999999998887
Q ss_pred CCHHHHHHHHH-hcccCCeEEEEEeCCCC
Q 006633 298 YADGLYLIEVD-RVLRPGGYWILSGPPVN 325 (637)
Q Consensus 298 ~d~~~~L~ei~-RvLKPGG~Lvls~pp~~ 325 (637)
++..+|+++. |+|||||++++..|...
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 7899999999 99999999999987543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=134.25 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=89.8
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCe
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sF 283 (637)
.+.+.++.. .+.+|||||||+|.++..|++++. .++.+ |+++.+++.|+++. ..+.+...|...+++++++|
T Consensus 35 ~l~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 35 ELKKMLPDF--NQKTVLDLGCGFGWHCIYAAEHGAKKVLGI---DLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHTTCCCC--TTCEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHhhhcc--CCCEEEEECCCCCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCe
Confidence 344444433 345999999999999999999865 55555 66777887777664 46889999999999999999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|++..+++|+. +...+++++.|+|||||.++++.+
T Consensus 110 D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 110 NVVLSSLALHYIA--SFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999998885 899999999999999999999854
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-13 Score=132.27 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=97.3
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCC------CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV------PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~------~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
.+|||||||+|.++..|++.+..++.+ |+++.+++.|+++.. .+.+..+|...++ ++++||+|+++.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGL---DISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEE---CSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEE---ECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 489999999999999999887655555 666677777765532 3788888888877 556999999999998
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
|+..++...+++++.++|||||+|++...+.........|.. ..+.++.+.+..+|+.+.
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKV-------DVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCC-------CHHHHHHHHGGGTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccC-------CHHHHHHHHHHcCCeEEE
Confidence 887667889999999999999999998754432211111222 234567778888887654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=137.42 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=83.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC----------------------CCeEEEEeccccC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----------------------VPALIGVMASIRL 276 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg----------------------~~~~~~~~d~~~L 276 (637)
+.+|||+|||+|..+..|+++|..++++ |+++.+++.|+++. .++.+.++|...+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGV---EISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEE---CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEE---ECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4499999999999999999998777777 77778887775432 4688999999999
Q ss_pred CCCC-CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 PYPS-RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 pfpd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++++ ++||+|++..++++++.++...+++++.|+|||||.|++.+
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8764 89999999999988876467789999999999999997653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=135.62 Aligned_cols=116 Identities=25% Similarity=0.435 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEec
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMA 272 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d 272 (637)
......+.+.+.++..++ .+|||||||+|.++..++++ +..++.+ |+++.+++.++++ +. .+.+...|
T Consensus 45 ~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d 119 (273)
T 3bus_A 45 ATDRLTDEMIALLDVRSG--DRVLDVGCGIGKPAVRLATARDVRVTGI---SISRPQVNQANARATAAGLANRVTFSYAD 119 (273)
T ss_dssp HHHHHHHHHHHHSCCCTT--CEEEEESCTTSHHHHHHHHHSCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHhcCCCcceEEEECc
Confidence 344555666666655544 49999999999999999875 5444444 4455555555433 33 48888999
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+|+++++||+|++..+++|+. +...+++++.|+|||||.+++..+
T Consensus 120 ~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 120 AMDLPFEDASFDAVWALESLHHMP--DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TTSCCSCTTCEEEEEEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCCCCCCccEEEEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999999999999999998886 789999999999999999999865
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=132.46 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=97.8
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
+.+|||||||+|.++..|++++..++.+ |+++.+++.++++. .+.+...+...++ ++++||+|+++.+++|+..+
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEE---CCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 3499999999999999999987666665 66677777777663 4455667788888 78999999999999998854
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhc-eeeec
Q 006633 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC-WKKLI 360 (637)
Q Consensus 299 d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~-w~~v~ 360 (637)
+...+++++.|+|||||++++..+......... +... ......+.+..++++.+ |+.+.
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-LARY--YNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-TSCE--ECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-cchh--ccCCCHHHHHHHHHhCCCcEEEE
Confidence 678999999999999999999976443221110 0000 00112345777888888 87664
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=129.60 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C--CEEEEcCccccHHHHHHHHHHc----C--CCeEEEEe
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----G--VPALIGVM 271 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~--v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~ 271 (637)
.....+.+.+.++..+ .+|||+|||+|.++..|+++ + ++++|+ ++.+++.|+++ + ..+.+...
T Consensus 29 ~~~~~~~~~~~~~~~~---~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~-----s~~~~~~a~~~~~~~~~~~~~~~~~~ 100 (219)
T 3dlc_A 29 YPIIAENIINRFGITA---GTCIDIGSGPGALSIALAKQSDFSIRALDF-----SKHMNEIALKNIADANLNDRIQIVQG 100 (219)
T ss_dssp HHHHHHHHHHHHCCCE---EEEEEETCTTSHHHHHHHHHSEEEEEEEES-----CHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred cHHHHHHHHHhcCCCC---CEEEEECCCCCHHHHHHHHcCCCeEEEEEC-----CHHHHHHHHHHHHhccccCceEEEEc
Confidence 3445556666655332 28999999999999999986 3 455555 44555544433 3 35889999
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...+++++++||+|+++.+++|+. +...+++++.|+|||||.+++..+
T Consensus 101 d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 101 DVHNIPIEDNYADLIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp BTTBCSSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CHHHCCCCcccccEEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEec
Confidence 9999999999999999999998885 899999999999999999999864
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=126.02 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=84.3
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEec
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
+.++..++ .+|||+|||+|.++..+++.+..++.+ |+++.+++.++++...+.+...+ +++++++||+|+++
T Consensus 11 ~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 11 PNIFEGKK--GVIVDYGCGNGFYCKYLLEFATKLYCI---DINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFA 82 (170)
T ss_dssp HHHHSSCC--EEEEEETCTTCTTHHHHHTTEEEEEEE---CSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEE
T ss_pred HhcCcCCC--CeEEEECCCCCHHHHHHHhhcCeEEEE---eCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEc
Confidence 34444443 489999999999999999885344444 66677888887776678888776 78889999999999
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++|+. +...+++++.|+|||||++++..+
T Consensus 83 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 83 NSFHDMD--DKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp SCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhccc--CHHHHHHHHHHhcCCCCEEEEEEc
Confidence 9998886 799999999999999999999865
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=125.91 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=83.3
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCCCCCCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYPSRA 282 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lpfpd~s 282 (637)
+.+.++..++ .+|||+|||+|.++..|++++..++.+ |+++.+++.+++ .+. ++.+...|...+++ +++
T Consensus 24 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 97 (199)
T 2xvm_A 24 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGYDVDAW---DKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ 97 (199)
T ss_dssp HHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred HHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence 4445544443 499999999999999999886544444 444444444433 233 68888899888888 889
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.+++|+..++...++.++.++|||||.+++..+
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 9999999999888755788999999999999999888653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-13 Score=132.47 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=86.0
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cC-CCeEEEEeccccCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RG-VPALIGVMASIRLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg-~~~~~~~~d~~~Lpfpd 280 (637)
..+.+.+...++. +|||||||+|.++..+++.+..++.+ |+++.+++.+++ .+ .++.+...+...+|+++
T Consensus 11 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 11 GLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGV---DATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred chHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 3455565555544 99999999999999999885444333 444444444433 23 35888899999999999
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|++..+++|+. +...++.++.|+|||||++++..+
T Consensus 86 ~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp TCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999998887 799999999999999999999864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-13 Score=130.18 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC----C------CeEEE
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG----V------PALIG 269 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg----~------~~~~~ 269 (637)
....+.+.+.+...++ .+|||||||+|.++..|++++ ..++.+ |+++.+++.|+++. . .+.+.
T Consensus 15 ~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNA--RRVIDLGCGQGNLLKILLKDSFFEQITGV---DVSYRSLEIAQERLDRLRLPRNQWERLQLI 89 (217)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHHCTTCSEEEEE---ESCHHHHHHHHHHHTTCCCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHhhCCCCEEEEE---ECCHHHHHHHHHHHHHhcCCcccCcceEEE
Confidence 3445566666665544 499999999999999999873 344444 45556666665441 1 58888
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..|...+++++++||+|+++.+++|+..++...+++++.++|||||.++++.
T Consensus 90 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 90 QGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 8888777777789999999999988874334899999999999999777664
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=9e-13 Score=132.04 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=83.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
+.+|||+|||+|.++..|++++..++.+ |+++.+++.++++ ..++.+...+...+++++++||+|++..+++|
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIAL---DADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEE---ESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 4599999999999999999886655555 6667777777665 35688999999999999999999999999976
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+. +...++.++.|+|||||.+++.
T Consensus 117 ~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 VP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred cC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 66 7999999999999999999997
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=133.41 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=89.3
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEE
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMA 286 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV 286 (637)
.+.+.+...+ +.+|||||||+|.++..|++.+..++.+ |+++.+++.++++..++.+..+|...+|+ +++||+|
T Consensus 48 ~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v 121 (279)
T 3ccf_A 48 DLLQLLNPQP--GEFILDLGCGTGQLTEKIAQSGAEVLGT---DNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAV 121 (279)
T ss_dssp HHHHHHCCCT--TCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEE
T ss_pred HHHHHhCCCC--CCEEEEecCCCCHHHHHHHhCCCeEEEE---ECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEE
Confidence 3445554444 3499999999999999999886666666 66778888887776677888889988887 5899999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++..+++|+. +...++.++.|+|||||++++..+
T Consensus 122 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 122 FSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999997766 899999999999999999999875
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-13 Score=135.70 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~ 281 (637)
....+.+.+.++..++ .+|||||||+|.++..|++.+..++++ |+++.+++.++++. ++.+.+.|...+|++++
T Consensus 20 ~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 20 IRIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHP-QVEWFTGYAENLALPDK 93 (261)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEETCTTSHHHHHHHTTTCEEEEE---CSCHHHHHSSCCCT-TEEEECCCTTSCCSCTT
T ss_pred HHHHHHHHHHhCCCCC--CEEEEEcCcccHHHHHHHhCCCEEEEE---eCCHHHHHHHHhcc-CCEEEECchhhCCCCCC
Confidence 3456677777765443 499999999999999999987766776 67778887775554 88999999999999999
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|++..+++|+. +...+++++.|+|| ||++++..+
T Consensus 94 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 94 SVDGVISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp CBSEEEEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CEeEEEEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEc
Confidence 999999999998886 89999999999999 998888764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=128.24 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL 276 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~L 276 (637)
.+...+.+.+++........+|||+|||+|.++..|++.+..++.+ |+++.+++.++++ +..+.+...+...+
T Consensus 20 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 96 (246)
T 1y8c_A 20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAV---DLSQEMLSEAENKFRSQGLKPRLACQDISNL 96 (246)
T ss_dssp HHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEE---CSCHHHHHHHHHHHHHTTCCCEEECCCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEE---ECCHHHHHHHHHHHhhcCCCeEEEecccccC
Confidence 3555666667665442245599999999999999999987555555 5555565555543 34678888898888
Q ss_pred CCCCCCeeEEEecc-ccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSR-CLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~-~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++ ++||+|++.. +++|+.. ++...++.++.++|||||.+++..+
T Consensus 97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 877 8899999998 9988842 2688999999999999999999765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=137.26 Aligned_cols=116 Identities=18% Similarity=0.292 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEec
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMA 272 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d 272 (637)
+.+.+.+.+.++..++ .+|||||||+|.++..|++++..++++ |+++.+++.|+++. ..+.+...+
T Consensus 43 ~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSV---DASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEETTCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhcccCC--CEEEEecCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 5556667777765544 499999999999999999997655555 55666666665421 346778888
Q ss_pred cccCC---CCCCCeeEEEec-cccccCCc-----CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLP---YPSRAFDMAHCS-RCLIPWGQ-----YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lp---fpd~sFDlV~~s-~~L~h~~~-----~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...++ +++++||+|+|. .+++|+.+ ++...+++++.|+|||||+|++..+
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 88887 889999999998 89988872 1289999999999999999999876
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-12 Score=122.03 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=96.4
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEec-cccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCS-RCLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s-~~L~h~~~ 297 (637)
..+|||+|||+|.++..+++.+..++.+ |+++.+++.++++..++.+...+...+++++++||+|+++ .+++|+..
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGHDVLGT---DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred CCeEEEECCCCCHHHHHHHHCCCcEEEE---cCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence 3499999999999999999987666666 6677888888877767888888988888888999999998 67766653
Q ss_pred CCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 298 YADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
++...++.++.++|||||.+++..+.... .....+..+.+..+|+.+.
T Consensus 124 ~~~~~~l~~~~~~l~~~G~l~~~~~~~~~---------------~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 124 DGREPALANIHRALGADGRAVIGFGAGRG---------------WVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEETTSS---------------CCHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCCCC---------------cCHHHHHHHHHHcCCEEee
Confidence 35688999999999999999998653210 1123456667777886553
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=132.59 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=88.4
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~s 282 (637)
...+.+.+...+ +.+|||||||+|.++..++++ +..++.+ |+++.+++.++++..++.+...|...++ ++++
T Consensus 22 ~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~ 95 (259)
T 2p35_A 22 ARDLLAQVPLER--VLNGYDLGCGPGNSTELLTDRYGVNVITGI---DSDDDMLEKAADRLPNTNFGKADLATWK-PAQK 95 (259)
T ss_dssp HHHHHTTCCCSC--CSSEEEETCTTTHHHHHHHHHHCTTSEEEE---ESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSC
T ss_pred HHHHHHhcCCCC--CCEEEEecCcCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCCCcEEEECChhhcC-ccCC
Confidence 334555554433 348999999999999999887 4444444 5566777778777667889999998888 7889
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.+++|+. +...++.++.++|||||.+++..+
T Consensus 96 fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 96 ADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 99999999997765 899999999999999999999875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-13 Score=128.16 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred HHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCe
Q 006633 206 DDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 206 ~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lpfpd~sF 283 (637)
..+.+.+. ..+ +.+|||||||+|.++..|++++..++.+ |+++.+++.+++.+ .++.+...|...+ +++++|
T Consensus 35 ~~~~~~l~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 35 PAALERLRAGNI--RGDVLELASGTGYWTRHLSGLADRVTAL---DGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HHHHHHHTTTTS--CSEEEEESCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCE
T ss_pred HHHHHHHhcCCC--CCeEEEECCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHhcCCCCeEEEecccccC-CCCCce
Confidence 34445544 333 3499999999999999999987666666 66778888887766 5688888898887 788999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+++.+++|+..++...+++++.++|||||.+++..+
T Consensus 109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999999888742248999999999999999999865
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=128.66 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=90.4
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCe
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sF 283 (637)
.+.++++..+ +.+|||||||+|.++..+++++. .++.+ |+++.+++.++++.. .+.+...+...+++++++|
T Consensus 34 ~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVG--GLRIVDLGCGFGWFCRWAHEHGASYVLGL---DLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCT--TCEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccC--CCEEEEEcCcCCHHHHHHHHCCCCeEEEE---cCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence 4555555444 34999999999999999998866 56666 667788888877653 4788888998899889999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|++..+++|+. +...+++++.++|||||.+++..+
T Consensus 109 D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 109 DLAYSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 9999999998876 799999999999999999999864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=131.90 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=89.5
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
.+.+.+++........+|||||||+|.++..|++++..++.+ |+++.+++.|+++...+.+..+|...+++ +++||
T Consensus 37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD 112 (263)
T 3pfg_A 37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGL---ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFS 112 (263)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEE
T ss_pred HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcC
Confidence 334444443222234599999999999999999987666666 66778888888877788899999988887 78999
Q ss_pred EEEecc-ccccCCc-CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSR-CLIPWGQ-YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~-~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+|.. +++|+.. ++...+++++.++|||||.|++..
T Consensus 113 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 113 AVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp EEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999998 8988752 166789999999999999999973
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=134.20 Aligned_cols=99 Identities=18% Similarity=0.081 Sum_probs=82.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCC-CCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP-YPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lp-fpd~sFDlV~~s~~ 291 (637)
+.+|||||||+|.++..|++.+..++.+ |+++.+++.|+++ + ..+.+..++...++ +++++||+|++..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILC---DLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4599999999999999999986655555 5556666666543 3 34788889988887 78899999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++|+. +...+++++.++|||||.+++..+
T Consensus 146 l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWVA--DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhccc--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 98886 789999999999999999999865
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-14 Score=150.84 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEE---EEeccccCC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALI---GVMASIRLP 277 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~---~~~d~~~Lp 277 (637)
...+.+.+.+.+...+ +.+|||||||+|.++..|++++..++++ |+++.+++.|++++.+... ...+...++
T Consensus 92 ~~~~~~~l~~~~~~~~--~~~VLDiGcG~G~~~~~l~~~g~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 92 FAMLARDFLATELTGP--DPFIVEIGCNDGIMLRTIQEAGVRHLGF---EPSSGVAAKAREKGIRVRTDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHHHHTTTCSS--SCEEEEETCTTTTTHHHHHHTTCEEEEE---CCCHHHHHHHHTTTCCEECSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--CCEEEEecCCCCHHHHHHHHcCCcEEEE---CCCHHHHHHHHHcCCCcceeeechhhHhhcc
Confidence 3445555666655444 3499999999999999999998777777 7788899999888665432 223445567
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCC--chhhhHHhHhhHHHHHHHhc
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR--TTEDLKSEQNGIETIARSLC 355 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~--t~e~l~~~~~~ie~la~~l~ 355 (637)
+++++||+|++..+++|+. ++..+++++.|+|||||+|++..|..........|.. ..+......+.++.++++.+
T Consensus 167 ~~~~~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG 244 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCG 244 (416)
T ss_dssp HHHCCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcC
Confidence 7789999999999999887 8999999999999999999998764211100000000 00011112345778888888
Q ss_pred eeeec
Q 006633 356 WKKLI 360 (637)
Q Consensus 356 w~~v~ 360 (637)
|+.+.
T Consensus 245 f~~~~ 249 (416)
T 4e2x_A 245 FELVD 249 (416)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=128.92 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~L 276 (637)
+...+.+.+++.. ...+.+|||||||+|.++..+++. +..++.+ |+++.+++.|+++.. .+.+...|...+
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLV---DMSEKMLEIAKNRFRGNLKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHTCSCTTEEEEESCTTTC
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHhhccCCCEEEEeCchhcc
Confidence 4444556666552 233469999999999999999987 5555555 666777777776532 688899999999
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++ ++||+|++..+++|+.+.+...+++++.|+|||||.+++..+
T Consensus 105 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 105 DFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp CCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 887 899999999999888642223699999999999999999864
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=126.19 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.+.+|||+|||+|.++..+ +. .++.+ |+++.+++.++++...+.+...+...+|+++++||+|++..+++|+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGV---EPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEE---CCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEE---eCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 3459999999999999888 44 44444 56677777887776667888889999999999999999999998876
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+...++.++.|+|||||.++++.+.
T Consensus 110 --~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 110 --DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7999999999999999999999763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=130.99 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=94.6
Q ss_pred CCEEEEECCCCchHHHHHhhcC-CEEEEcCccccHHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-v~~vdisp~Dls~a~i~~A~erg-----~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..+|||||||+|.++..|++++ ..++.+ |+++.+++.|+++. ..+.+...+...+++++++||+|++..++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMV---DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEE---ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 5599999999999999998873 234444 55556666666543 23678888888899888899999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+|+.+++...++.++.++|||||++++..+...... .|...........+++.+++++.+|+.+.
T Consensus 157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV---ILDDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE---EEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc---eecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 888732345899999999999999999865222100 01111111111345577788888886654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=126.90 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=85.7
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRA 282 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd~s 282 (637)
..+...+...+ ..+|||+|||+|.++..|++++..++.+ |+++.+++.++++. .++.+...|...++ ++++
T Consensus 41 ~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~ 114 (216)
T 3ofk_A 41 QLLRLSLSSGA--VSNGLEIGCAAGAFTEKLAPHCKRLTVI---DVMPRAIGRACQRTKRWSHISWAATDILQFS-TAEL 114 (216)
T ss_dssp HHHHHHTTTSS--EEEEEEECCTTSHHHHHHGGGEEEEEEE---ESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCC
T ss_pred HHHHHHcccCC--CCcEEEEcCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCC
Confidence 33444444333 4589999999999999999985444444 55667777776653 35788899988888 6889
Q ss_pred eeEEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 283 FDMAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 283 FDlV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
||+|+++.+++|+.+ ++...++.++.++|||||.++++.+..
T Consensus 115 fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 115 FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp EEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999988873 122577999999999999999987633
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-12 Score=124.54 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=86.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc--CCCCCCCee
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR--LPYPSRAFD 284 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~--Lpfpd~sFD 284 (637)
.+.+.++ ....+|||+|||+|.++..+++.+..++.+ |+++.+++.+.++.. .+...+... +++++++||
T Consensus 24 ~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~---D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 24 NLLKHIK---KEWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp HHHTTCC---TTCSEEEEETCTTSHHHHHHHTTTCEEEEE---ESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHhc---cCCCcEEEeCCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccC
Confidence 3444444 234599999999999999999887666666 667788888876653 566677665 678889999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+|+++.+++|+. +...++.++.++|||||.+++..|.
T Consensus 96 ~v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 96 CVIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EEEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999999998887 7899999999999999999999764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=131.43 Aligned_cols=99 Identities=25% Similarity=0.412 Sum_probs=84.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
..+|||||||+|.++..|++++..++.+ |+++.+++.++++.... +...+...+++++++||+|++..+++|+..
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~- 129 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE- 129 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred CCeEEEeCCCcCHHHHHHHHcCCeEEEE---eCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhccc-
Confidence 4599999999999999999987666666 66778888887775432 777888889999999999999988888876
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 299 ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 299 d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...+++++.++|||||.+++..+
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 799999999999999999999876
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=132.00 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=85.3
Q ss_pred HHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCC
Q 006633 206 DDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLP 277 (637)
Q Consensus 206 ~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lp 277 (637)
+.+.+.+. ..+ +.+|||||||+|.++..|+++ +..++.+ |+++.+++.|++ .+. .+.+..+|...+|
T Consensus 106 ~~l~~~l~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 106 EFLMDHLGQAGP--DDTLVDAGCGRGGSMVMAHRRFGSRVEGV---TLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180 (312)
T ss_dssp HHHHTTSCCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHhccCCC--CCEEEEecCCCCHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC
Confidence 44555554 333 459999999999999999987 6555444 445555555543 343 4889999999999
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|++..+++|+ +...++.++.|+|||||++++..+
T Consensus 181 ~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYV---DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CCTTCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEeEEEECCchhhC---CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999999776 389999999999999999999864
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=131.66 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~ 274 (637)
...++.+.+.++..++ .+|||||||+|.++..+++. +..++.+ |+++.+++.++++ + ..+.+...|..
T Consensus 50 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gv---d~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 50 IAKIDLALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGL---TLSKNQANHVQQLVANSENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHHHHHHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHcCCCCc--CEEEEECCcccHHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 3344555555554444 49999999999999999854 5555555 5556666666544 3 25778888887
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+| ++||+|++..+++|+..++...+++++.|+|||||.+++..+
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 765 789999999999999644889999999999999999999865
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=129.89 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=80.7
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
+.+|||||||+|.++..++++ +..++.+ |+++.+++.++++ + .++.+...|...+++++++||+|+++.+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSI---DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 459999999999999999987 4444444 4444555444432 3 3588889999999999999999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++|+. +...++.++.++|||||++++..+
T Consensus 115 l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 115 LEHLQ--SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 98887 789999999999999999999865
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=125.34 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=78.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
..+|||+|||+|.++..+++++..++.+ |+++.+++.|+++ +..+.+...|...+++++++||+|+++.++++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 4599999999999999999885444333 4444555544433 46788889998888888899999999998533
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...+...++.++.++|||||.+++..+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 3322678999999999999999999875
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=129.64 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecc
Q 006633 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMAS 273 (637)
Q Consensus 202 ~~~i~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~ 273 (637)
......+.+.+. ..+ +.+|||||||+|.++..+++. +..++.+ |+++.+++.|++ .+. .+.+...|.
T Consensus 31 ~~~~~~~l~~l~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTE--KSLIADIGCGTGGQTMVLAGHVTGQVTGL---DFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp HHHHHHHHTTCCCCCT--TCEEEEETCTTCHHHHHHHTTCSSEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhcccCCC--CCEEEEeCCCCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 444555666655 333 459999999999999999987 3244444 444455544443 343 388999999
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+|+++++||+|++..+++|+ +...+++++.++|||||++++..+
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999999999999999777 478999999999999999999875
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=128.52 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHH----cCCC--eEEEEe
Q 006633 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE----RGVP--ALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~~~ 271 (637)
......+.+.+. ..+ +.+|||||||+|.++..++++. ++++|+ ++.+++.+++ .+.. +.+...
T Consensus 31 ~~~~~~~l~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (257)
T 3f4k_A 31 PEATRKAVSFINELTD--DAKIADIGCGTGGQTLFLADYVKGQITGIDL-----FPDFIEIFNENAVKANCADRVKGITG 103 (257)
T ss_dssp HHHHHHHHTTSCCCCT--TCEEEEETCTTSHHHHHHHHHCCSEEEEEES-----CHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHHHhcCCC--CCeEEEeCCCCCHHHHHHHHhCCCeEEEEEC-----CHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 444555555553 333 3499999999999999999873 455555 4444444433 3433 889999
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|...+|+++++||+|++..+++|+ +...+++++.++|||||++++..+
T Consensus 104 d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 104 SMDNLPFQNEELDLIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp CTTSCSSCTTCEEEEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ChhhCCCCCCCEEEEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999999766 478999999999999999999975
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=117.07 Aligned_cols=132 Identities=13% Similarity=0.114 Sum_probs=89.4
Q ss_pred cCCeeec-CCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc
Q 006633 184 QGDRFSF-PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262 (637)
Q Consensus 184 ~g~~~~F-pg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er 262 (637)
.+..+.| .+.+.+.+...+...+.+.+.+...+ +.+|||+|||+|.++..+++.+..++.+ |+++.+++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~~~~~~~~v~~~---D~~~~~~~~a~~~ 93 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK--DDDILDLGCGYGVIGIALADEVKSTTMA---DINRRAIKLAKEN 93 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCT--TCEEEEETCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHH
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHcccCC--CCeEEEeCCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHHH
Confidence 3444444 22333333333345566777776554 4499999999999999999875444444 4444444444432
Q ss_pred ----CCC---eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 263 ----GVP---ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 263 ----g~~---~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.. +.+...+... ++++++||+|+++..+++... +...+++++.++|||||.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 94 IKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKE-VLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHcCCCccceEEEECchhc-ccccCCceEEEECCCcccchh-HHHHHHHHHHHHcCCCCEEEEEEC
Confidence 333 7888877765 455788999999988744233 678999999999999999999975
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-12 Score=122.83 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=84.1
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPS-RA 282 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L---pfpd-~s 282 (637)
.+.+.+....+ .+|||||||+|.++..|++++..++.+ |+++.+++.++++ ....+...+...+ ++.. .+
T Consensus 43 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 43 AILLAILGRQP--ERVLDLGCGEGWLLRALADRGIEAVGV---DGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHHHHHHTCC--SEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCC
T ss_pred HHHHHhhcCCC--CEEEEeCCCCCHHHHHHHHCCCEEEEE---cCCHHHHHHHHHh-cccccchhhHHhhcccccccCCC
Confidence 34455444443 499999999999999999987666666 7778888888877 4556666666655 5554 45
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.+++ .. +...+++++.++|||||++++..+
T Consensus 117 fD~v~~~~~l~--~~-~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 117 YDLICANFALL--HQ-DIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp EEEEEEESCCC--SS-CCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccEEEECchhh--hh-hHHHHHHHHHHHhCCCeEEEEEec
Confidence 99999999995 33 899999999999999999999976
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=124.20 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=84.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC----C------CeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V------PALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg----~------~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..+++++..++.+ |+++.+++.++++. . .+.+...+...+++++++||+|++
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGI---DINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEE---ECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 3489999999999999999987666666 66677777776642 2 367888899999999999999999
Q ss_pred ccccccCCcCCHH---HHHHHHHhcccCCeEEEEEeCCC
Q 006633 289 SRCLIPWGQYADG---LYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 289 s~~L~h~~~~d~~---~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+.+++|+. +.. .+++++.++|||||.+++..+..
T Consensus 108 ~~~l~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 108 QAFLTSVP--DPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp ESCGGGCC--CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cchhhcCC--CHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 99998887 566 89999999999999999987643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.9e-12 Score=121.14 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=79.8
Q ss_pred EEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+|||||||+|.++..|++.+..++.+ |+++.+++.++++ +..+.+...|...+++++++||+|+++. .|+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAV---DQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEE---CSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEE---ECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCC
Confidence 89999999999999999887655555 5556666655543 4578888889888898889999999964 3554
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
.++...++.++.++|||||.+++..+..
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 3378899999999999999999997643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=122.99 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCEEEEECCCCchH-HHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASW-GAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~-a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
..+|||+|||+|.+ ...++..+..++.+ |+++.+++.+++ .+..+.+...|...+++++++||+|++..+++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGI---EISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEE---ECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 34999999999987 45555555444444 444444444433 34567788889989999899999999999998
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+..++...++.++.++|||||.+++..+
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88533788999999999999999999864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=129.68 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhh---cCCEEEEcCccccHHHHHHHHHHc-------CCCeEEEEe
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS---RNILAVSFAPRDTHEAQVQFALER-------GVPALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~---~~v~~vdisp~Dls~a~i~~A~er-------g~~~~~~~~ 271 (637)
..+.+.|..+.. ..+.+|||||||+|.++..|++ .+..++++ |+++.+++.|+++ ..++.+.+.
T Consensus 23 ~~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 96 (299)
T 3g5t_A 23 SDFYKMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGS---DLSATMIKTAEVIKEGSPDTYKNVSFKIS 96 (299)
T ss_dssp HHHHHHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEE---ESCHHHHHHHHHHHHHCC-CCTTEEEEEC
T ss_pred HHHHHHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEE---eCCHHHHHHHHHHHHhccCCCCceEEEEc
Confidence 445555555543 2345999999999999999994 44444444 4555666555543 457899999
Q ss_pred ccccCCCCC------CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 272 ASIRLPYPS------RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 272 d~~~Lpfpd------~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+...+++++ ++||+|+++.+++|+ +...++.++.|+|||||.|++..
T Consensus 97 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 97 SSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp CTTCCGGGCTTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHhCCccccccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 999988877 899999999999666 68999999999999999999953
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=129.34 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~ 274 (637)
...++.+.+.+...++ .+|||||||+|.++..++++ +..++.+ |+++.+++.|+++ +. .+.+...|..
T Consensus 58 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (302)
T 3hem_A 58 YAKRKLALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGL---TLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 132 (302)
T ss_dssp HHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEE---ECCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHHHHHcCCCCc--CEEEEeeccCcHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECCHH
Confidence 3445556666555554 49999999999999999987 6555555 5555666655543 33 4778888877
Q ss_pred cCCCCCCCeeEEEeccccccCCc-------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQ-------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~-------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+ +++||+|++..+++|+++ ++...+++++.|+|||||.+++..+
T Consensus 133 ~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 133 EF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred Hc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 65 789999999999988852 2347999999999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=126.70 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=76.5
Q ss_pred CCEEEEECCCCchHHHHHhh--c-CCEEEEcCccccHHHHHHHHHHc----CCC--eEEEEeccccCCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMS--R-NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~--~-~v~~vdisp~Dls~a~i~~A~er----g~~--~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
+.+|||||||+|.++..|+. . +..++.+ |+++.+++.|+++ +.. +.+..+|...++++ ++||+|+++
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 194 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGI---DYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN 194 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEE---ESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence 45999999999999999852 2 3344444 4555666666544 222 88999999999988 999999999
Q ss_pred cccccCCcCCHHH---HHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQYADGL---YLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~d~~~---~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++|+. +... +++++.++|||||++++...
T Consensus 195 ~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 195 GLNIYEP--DDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp SSGGGCC--CHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred ChhhhcC--CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9998887 4544 79999999999999999863
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=121.48 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=80.2
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
+.+|||||||+|.++..++++ +++|+ ++.+++.++++ .+.+...+...+++++++||+|++..+++|+.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~-----s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEP-----SERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEES-----CHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS--
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCC-----CHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc--
Confidence 448999999999999999887 55544 56677777776 56777888888999889999999999998876
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 299 ADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 299 d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+...++.++.++|||||.+++..+.
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 7999999999999999999998764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-12 Score=130.46 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~ 274 (637)
...++.+.+.+...++ .+|||||||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+.+...|..
T Consensus 76 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 150 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDVNVIGL---TLSKNQHARCEQVLASIDTNRSRQVLLQGWE 150 (318)
T ss_dssp HHHHHHHHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCc--CEEEEEcccchHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECChH
Confidence 3344555555544443 49999999999999999987 6555555 5566666666544 32 3788888887
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+| ++||+|++..+++|+..++...++.++.++|||||.+++..+
T Consensus 151 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 151 DFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 765 789999999999888643789999999999999999999875
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=126.98 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=80.0
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
+.+|||+|||+|.++..|++++..++.+ |+++.+++.++ ..+.++.+...|...+++ +++||+|+++.+++|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSW---DHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 3489999999999999999986544444 44445554443 335578899999988887 789999999999988
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+..++...++.++.++|||||.+++...
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8754677999999999999999888653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=127.28 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=86.4
Q ss_pred HHHHHHHHHh-cccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccc
Q 006633 203 AYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (637)
Q Consensus 203 ~~i~~L~~lL-~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~ 274 (637)
.+++.+.+.+ ...+ ..+|||||||+|.++..|++. +..++.+ |+++.+++.|+++ +.++.+.+.|..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~v~~~~~d~~ 82 (284)
T 3gu3_A 8 DYVSFLVNTVWKITK--PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT 82 (284)
T ss_dssp HHHHHHHHTTSCCCS--CCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHhccCC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence 3444555544 2333 459999999999999999986 3444444 4455555555443 346888999999
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.++++ ++||+|++..+++|+. +...+++++.|+|||||++++..+.
T Consensus 83 ~~~~~-~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 83 EIELN-DKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TCCCS-SCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCcC-CCeeEEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88884 6999999999998886 7999999999999999999999874
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=123.29 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=80.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc-ccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR-CLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~-~L~h~~~ 297 (637)
..+|||+|||+|.++..|++++..++.+ |+++.+++.++++...+.+...|...+++ +++||+|+|.. +++|+..
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGL---ELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEE---ESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEE---eCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 4599999999999999999885444444 56677888888776678888889888887 68899999755 7777642
Q ss_pred -CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 298 -YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 298 -~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++...+++++.++|||||.+++..+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2567899999999999999999854
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-11 Score=140.24 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=94.8
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc---------
Q 006633 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER--------- 262 (637)
Q Consensus 195 ~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er--------- 262 (637)
.+.+.-....++.+.+.+...++ .+|||||||+|.++..|++++ ..++++ |+++.+++.|+++
T Consensus 700 tFsPPL~eqRle~LLelL~~~~g--~rVLDVGCGTG~lai~LAr~g~p~a~VtGV---DIS~emLe~AReRLa~~lnAkr 774 (950)
T 3htx_A 700 FFKPPLSKQRVEYALKHIRESSA--STLVDFGCGSGSLLDSLLDYPTSLQTIIGV---DISPKGLARAAKMLHVKLNKEA 774 (950)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSCC--SEEEEETCSSSHHHHHHTSSCCCCCEEEEE---ESCHHHHHHHHHHHHHHTTTTC
T ss_pred cCCchHHHHHHHHHHHHhcccCC--CEEEEECCCCCHHHHHHHHhCCCCCeEEEE---ECCHHHHHHHHHHhhhccchhh
Confidence 33444455566677777765544 499999999999999999885 455555 5566666666541
Q ss_pred -C-CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 263 -G-VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 263 -g-~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+ .++.+.++|...+++++++||+|++..+++|+.+.....++.++.|+|||| .++++.|..
T Consensus 775 ~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 775 CNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp SSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred cCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 2 358899999999999999999999999999888423446999999999999 888887654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=132.35 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=81.0
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc---------C----CCeEEEEeccccC------
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER---------G----VPALIGVMASIRL------ 276 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er---------g----~~~~~~~~d~~~L------ 276 (637)
+.+|||||||+|.++..|++. +..++.+ |+++.+++.|+++ + .++.+...+...+
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGV---DMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEE---ECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 459999999999999998875 3344444 4555666666554 3 5788999998887
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++++||+|+++.+++|+. +...+|+++.|+|||||+|++..+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 89999999999999997776 799999999999999999999864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=117.48 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=69.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCC-CCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP-YPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lp-fpd~sFDlV~~s~~L 292 (637)
+.+|||+|||+|.++..|++++..++.+ |+++.+++.|+++ + .++.+...+...++ +.+++||+|+++...
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~~v~~v---D~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSKKVYAF---DVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 4599999999999999999885444444 4444555544432 3 35777776666643 557889999987433
Q ss_pred ccC-------CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPW-------GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~-------~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+. ..++...++.++.|+|||||.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 232 111456789999999999999999864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-12 Score=121.69 Aligned_cols=101 Identities=24% Similarity=0.204 Sum_probs=79.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
..+|||+|||+|.++..+++.+. .++.+ |+++.+++.++++. ..+.+...|...+++++++||+|++..++++
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFPNVTSV---DYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCCCEEEE---ESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCCcEEEE---eCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 34899999999999999998753 33333 45566666666553 3578888898888998999999999888755
Q ss_pred CC-------------cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WG-------------QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~-------------~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. .++...++.++.|+|||||.+++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 43 11567899999999999999999976
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=129.98 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCchHHHH----Hhhc--CCE--EEEcCccccHHHHHHHHHHc-----CC-Ce--EEEEeccccCC----
Q 006633 218 SIRTAIDTGCGVASWGAY----LMSR--NIL--AVSFAPRDTHEAQVQFALER-----GV-PA--LIGVMASIRLP---- 277 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~----La~~--~v~--~vdisp~Dls~a~i~~A~er-----g~-~~--~~~~~d~~~Lp---- 277 (637)
.+.+|||||||+|.++.. ++.+ ++. ++.+ |.++.|++.|+++ ++ ++ .+...+...++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~v---D~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV---EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEE---CSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEE---eCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhc
Confidence 345899999999976543 3332 442 1333 4455555555443 22 23 33444444443
Q ss_pred --CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 --YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 --fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|+++.+++|+. |+..+|+++.|+|||||+|++..+
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 6789999999999997777 899999999999999999999854
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=118.26 Aligned_cols=148 Identities=15% Similarity=0.049 Sum_probs=94.0
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHH----cCCC-eEE
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE----RGVP-ALI 268 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~e----rg~~-~~~ 268 (637)
|..+.......+.+.+......+.+|||+|||+|.++..+++.+ ++++|+ ++.+++.|++ .+.. +.+
T Consensus 39 f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~v~~ 113 (205)
T 3grz_A 39 FGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDI-----SDESMTAAEENAALNGIYDIAL 113 (205)
T ss_dssp ---CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHHHHHTTCCCCEE
T ss_pred cCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCCceEE
Confidence 44444444555555554222234599999999999999998873 445555 4445544443 2443 777
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHH
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 348 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie 348 (637)
...|... +.+++||+|+++..++ ....+++++.++|||||++++++.... ..+.+.
T Consensus 114 ~~~d~~~--~~~~~fD~i~~~~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------~~~~~~ 169 (205)
T 3grz_A 114 QKTSLLA--DVDGKFDLIVANILAE-----ILLDLIPQLDSHLNEDGQVIFSGIDYL-----------------QLPKIE 169 (205)
T ss_dssp EESSTTT--TCCSCEEEEEEESCHH-----HHHHHGGGSGGGEEEEEEEEEEEEEGG-----------------GHHHHH
T ss_pred Eeccccc--cCCCCceEEEECCcHH-----HHHHHHHHHHHhcCCCCEEEEEecCcc-----------------cHHHHH
Confidence 7777654 4568999999987663 346789999999999999999754110 133466
Q ss_pred HHHHHhceeeecc--cCc--EEEEeccCC
Q 006633 349 TIARSLCWKKLIQ--KKD--LAIWQKPTN 373 (637)
Q Consensus 349 ~la~~l~w~~v~~--~~~--~aIWqKP~~ 373 (637)
.+.+..+|+.+.. .++ ..+.++|.+
T Consensus 170 ~~~~~~Gf~~~~~~~~~~w~~~~~~~~~~ 198 (205)
T 3grz_A 170 QALAENSFQIDLKMRAGRWIGLAISRKHE 198 (205)
T ss_dssp HHHHHTTEEEEEEEEETTEEEEEEEECC-
T ss_pred HHHHHcCCceEEeeccCCEEEEEEecccc
Confidence 6777788876642 222 345555554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=117.25 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccc
Q 006633 200 GADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASI 274 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~ 274 (637)
..+...+.+.+.+... ...+.+|||+|||+|.++..+++++ ++++|+++..+..+..+.. ..+ .++.+..+|..
T Consensus 25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~ 103 (189)
T 3p9n_A 25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIE-ALGLSGATLRRGAVA 103 (189)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHH-HHTCSCEEEEESCHH
T ss_pred CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH-HcCCCceEEEEccHH
Confidence 3455556666665431 1234599999999999999888763 5666665544433333222 223 36888888877
Q ss_pred cCC--CCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 275 RLP--YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lp--fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
.++ +++++||+|+++..+++..+ +...++.++.+ +|||||.+++..+
T Consensus 104 ~~~~~~~~~~fD~i~~~~p~~~~~~-~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 104 AVVAAGTTSPVDLVLADPPYNVDSA-DVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHHHCCSSCCSEEEECCCTTSCHH-HHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHHhhccCCCccEEEECCCCCcchh-hHHHHHHHHHhcCccCCCeEEEEEec
Confidence 654 45789999999987744433 78899999999 9999999999865
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=118.02 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=91.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
..+|||||||+|.++..++ ..++++|+++. .+.+...+...+|+++++||+|++..++ |+.
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~-- 128 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MGT-- 128 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CSS--
T ss_pred CCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-ccc--
Confidence 3489999999999998884 57888888764 3456677888889999999999999999 553
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccC-----cEEEEeccC
Q 006633 299 ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK-----DLAIWQKPT 372 (637)
Q Consensus 299 d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~-----~~aIWqKP~ 372 (637)
+...++.++.++|||||.+++..+... . . ..+.+..+.+..+|+.+.... .+.+++|..
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~----~----~-------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSR----F----E-------DVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTG 192 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGG----C----S-------CHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECS
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCC----C----C-------CHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecC
Confidence 899999999999999999999865211 0 0 234566778888887765322 246666654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=127.24 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=83.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCC-----
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY----- 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpf----- 278 (637)
.++.+.+.++..++. +|||||||+|.++..|++++..++.+ |+++.+++.|+++.... +...+...++.
T Consensus 33 ~~~~il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~V~gv---D~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 33 DRENDIFLENIVPGS--TVAVIGASTRFLIEKALERGASVTVF---DFSQRMCDDLAEALADR-CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGG
T ss_pred HHHHHHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHhc-cceeeeeecccccccc
Confidence 345566666655544 99999999999999999997666666 67778888887764322 22233333332
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++||+|+++.+++|+..++...++.++.++| |||.++++.+
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 257899999999998887546778999999999 9999999865
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-12 Score=124.13 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CCCeEEEEecccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR 275 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~ 275 (637)
...+++.+...+. . .+.+|||||||+|.++..|++.+. .++.+ |+++.+++.|+++ +.++.+..++...
T Consensus 46 ~~~~~~~l~~~~~-~--~~~~vLDiGcGtG~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 119 (236)
T 1zx0_A 46 ETPYMHALAAAAS-S--KGGRVLEVGFGMAIAASKVQEAPIDEHWII---ECNDGVFQRLRDWAPRQTHKVIPLKGLWED 119 (236)
T ss_dssp GHHHHHHHHHHHT-T--TCEEEEEECCTTSHHHHHHHTSCEEEEEEE---ECCHHHHHHHHHHGGGCSSEEEEEESCHHH
T ss_pred HHHHHHHHHhhcC-C--CCCeEEEEeccCCHHHHHHHhcCCCeEEEE---cCCHHHHHHHHHHHHhcCCCeEEEecCHHH
Confidence 3445555655542 2 244899999999999999987643 33333 5566666666654 3557888888888
Q ss_pred C--CCCCCCeeEEEe-cccc--ccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 276 L--PYPSRAFDMAHC-SRCL--IPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 276 L--pfpd~sFDlV~~-s~~L--~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+ ++++++||+|++ ...+ ..+...+...++.++.|+|||||+|++..
T Consensus 120 ~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 120 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 8 899999999999 5543 11111144578999999999999999874
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=127.76 Aligned_cols=99 Identities=8% Similarity=-0.019 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCC-------eEEEEecc------ccC--
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVP-------ALIGVMAS------IRL-- 276 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~-------~~~~~~d~------~~L-- 276 (637)
+.+|||||||+|..+..++..+ ++++|+ ++.+++.|+++ +.. +.+.+.+. ..+
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~-----S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~ 123 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDP-----DADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE 123 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEES-----CHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEEC-----CHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc
Confidence 4589999999997666555543 455555 44555554433 221 44556555 323
Q ss_pred CCCCCCeeEEEeccccccC-CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPW-GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~-~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++++||+|+|..++++. ..++...+++++.|+|||||+|+++.+
T Consensus 124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4677899999999998553 322678999999999999999999876
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=119.86 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=76.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEeccc-cc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRC-LI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~-L~ 293 (637)
+.+|||+|||+|.++..|++++..++.+ |+++.+++.|++ .+..+.+...|...++++ ++||+|+|... ++
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGYEVVGL---DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 4599999999999999999986555554 555555555543 355788888998888865 68999998744 33
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++..++...++.++.++|||||.+++..+
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 44332677899999999999999999765
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=127.14 Aligned_cols=152 Identities=16% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCC-----------------
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV----------------- 264 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~----------------- 264 (637)
..++.+.+.+......+.+|||||||+|.+...++.. +..++++ |+++.+++.|+++..
T Consensus 56 ~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~ 132 (289)
T 2g72_A 56 WKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMT---DFLEVNRQELGRWLQEEPGAFNWSMYSQHACL 132 (289)
T ss_dssp HHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEE---CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEe---CCCHHHHHHHHHHHhhCcccccchhhhhHHHH
Confidence 3345566665433224569999999999955444432 3344444 445555555443100
Q ss_pred ------------------CeEEEEecccc-CCC-----CCCCeeEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEE
Q 006633 265 ------------------PALIGVMASIR-LPY-----PSRAFDMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 265 ------------------~~~~~~~d~~~-Lpf-----pd~sFDlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lv 318 (637)
...+..+|... +|+ ++++||+|+|+.+++|+..+ +...+|.++.|+|||||+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~ 212 (289)
T 2g72_A 133 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 212 (289)
T ss_dssp HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 03455567766 664 45679999999999774432 68899999999999999999
Q ss_pred EEeCC-CCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 319 LSGPP-VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 319 ls~pp-~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+.... ..|..... ..........+.+..+.+..+|+.+.
T Consensus 213 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 213 LIGALEESWYLAGE---ARLTVVPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp EEEEESCCEEEETT---EEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEEecCcceEEcCC---eeeeeccCCHHHHHHHHHHcCCeEEE
Confidence 98521 11111000 00000011234566777788886654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=126.64 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C----CCeEEEEeccc
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G----VPALIGVMASI 274 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g----~~~~~~~~d~~ 274 (637)
.....+.+.+...+ .+|||||||+|.++..|++++..++.+ |+++.+++.|+++ + .++.+..+|..
T Consensus 70 ~~~~~~~~~~~~~~---~~vLDlGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 70 SEAREFATRTGPVS---GPVLELAAGMGRLTFPFLDLGWEVTAL---ELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHCCCC---SCEEEETCTTTTTHHHHHTTTCCEEEE---ESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHHhhCCCC---CcEEEEeccCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 34455555554332 379999999999999999985444444 4455555555543 2 45889999999
Q ss_pred cCCCCCCCeeEEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.+++ +++||+|+|+..+.|+.+ ++...+|+++.++|||||.|++..+.
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 9887 689999997644445442 24689999999999999999999763
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=124.41 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~ 274 (637)
..+.+.+.+.+.. .+.+|||||||+|..+.+++++. ++++++ ++.+++.|+++ +....+...+..
T Consensus 47 ~~~m~~~a~~~~~---~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~-----~~~~~~~a~~~~~~~~~~~~~~~~~a~ 118 (236)
T 3orh_A 47 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPIDEHWIIEC-----NDGVFQRLRDWAPRQTHKVIPLKGLWE 118 (236)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHTTSCEEEEEEEEC-----CHHHHHHHHHHGGGCSSEEEEEESCHH
T ss_pred HHHHHHHHHhhcc---CCCeEEEECCCccHHHHHHHHhCCcEEEEEeC-----CHHHHHHHHHHHhhCCCceEEEeehHH
Confidence 4455666666542 24589999999999999998873 455555 55566666543 445666666654
Q ss_pred cC--CCCCCCeeEEEe-----ccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 275 RL--PYPSRAFDMAHC-----SRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 275 ~L--pfpd~sFDlV~~-----s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+ ++++++||.|++ ...+.|+. +...++.++.|+|||||.|++.
T Consensus 119 ~~~~~~~~~~FD~i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 119 DVAPTLPDGHFDGILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp HHGGGSCTTCEEEEEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEEC
T ss_pred hhcccccccCCceEEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEE
Confidence 43 578999999985 34444555 7889999999999999999885
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=128.20 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC--------------------------------
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-------------------------------- 263 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg-------------------------------- 263 (637)
.+.+|||||||+|.++..|+++ +..++++ |+++.+++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gv---Dis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGL---DIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEE---ESCHHHHHHHHHTC--------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3559999999999999999987 4444444 55566666665541
Q ss_pred -------------------------------CCeEEEEeccccCC-----CCCCCeeEEEeccccccC----CcCCHHHH
Q 006633 264 -------------------------------VPALIGVMASIRLP-----YPSRAFDMAHCSRCLIPW----GQYADGLY 303 (637)
Q Consensus 264 -------------------------------~~~~~~~~d~~~Lp-----fpd~sFDlV~~s~~L~h~----~~~d~~~~ 303 (637)
.++.+..+|....+ +.+++||+|+|..+++|+ ..++...+
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 24777777765443 678899999999998555 22257789
Q ss_pred HHHHHhcccCCeEEEEEeC
Q 006633 304 LIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 304 L~ei~RvLKPGG~Lvls~p 322 (637)
++++.++|||||+|++...
T Consensus 203 l~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHhCCCcEEEEecC
Confidence 9999999999999999854
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=130.04 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLP 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lp 277 (637)
+..++.+.+.+......+.+|||+|||+|.++..+++++..++.+ |+++.+++.|++ .+..+.+...|....+
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gv---Dis~~al~~A~~n~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGV---EDDLASVLSLQKGLEANALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEE---ESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence 334444444432122234599999999999999999986544444 445555554443 4556888889988887
Q ss_pred CCCCCeeEEEeccccccC---CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPW---GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~---~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++++||+|+++..+++. ..++...++.++.++|||||.++++.+
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 777899999999888551 111677899999999999999999875
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=123.17 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCCC-CCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPY-PSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lpf-pd~sFDlV~~s~ 290 (637)
+.+|||||||+|.++..+++.+. .++.+ |+++.+++.|+++ +. .+.+..+|...+++ ++++||+|++..
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEE---ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCeEEEECCCCCHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 44999999999999998887643 44444 4455555555543 22 46888889888888 688999999999
Q ss_pred ccccC--CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPW--GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~--~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++|. ..++...++.++.++|||||.+++..+
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 98662 222678999999999999999999976
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=122.77 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=93.3
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcC--CC------------------
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG--VP------------------ 265 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg--~~------------------ 265 (637)
.+..++......+.+|||||||+|.++..+++.+. .++.+ |+++.+++.++++. .+
T Consensus 45 ~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
T 2i62_A 45 NLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVS---DYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 121 (265)
T ss_dssp HHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEE---ESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTT
T ss_pred HHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEe---cCCHHHHHHHHHHHhcCCccccchhhhhhhhccccc
Confidence 33344443223456899999999999999888754 34444 55555665554431 11
Q ss_pred --------------e-EEEEeccccCC-CCC---CCeeEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 266 --------------A-LIGVMASIRLP-YPS---RAFDMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 266 --------------~-~~~~~d~~~Lp-fpd---~sFDlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+ .+..+|...++ +++ ++||+|+++.++++.... +...++.++.|+|||||+|++.....
T Consensus 122 ~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 122 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp CSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred ccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 5 77888877654 355 899999999999744332 67899999999999999999987422
Q ss_pred C-ccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 325 N-WESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 325 ~-w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
. +.... ...........+.+..+.+..+|+.+.
T Consensus 202 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~aGf~~~~ 235 (265)
T 2i62_A 202 SSYYMIG---EQKFSSLPLGWETVRDAVEEAGYTIEQ 235 (265)
T ss_dssp CCEEEET---TEEEECCCCCHHHHHHHHHHTTCEEEE
T ss_pred CceEEcC---CccccccccCHHHHHHHHHHCCCEEEE
Confidence 1 10000 000000011123566777788886654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-10 Score=109.00 Aligned_cols=108 Identities=16% Similarity=-0.010 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc----C-CCeEEEEecc
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMAS 273 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~ 273 (637)
.....+.+.+...++. +|||+|||+|.++..+++.+ ++++|++ +.+++.|+++ + ..+.+...+.
T Consensus 27 ~i~~~~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~ 99 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFALERN-----PQYLGFIRDNLKKFVARNVTLVEAFA 99 (204)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCTTSEEEEEECC-----HHHHHHHHHHHHHHTCTTEEEEECCT
T ss_pred HHHHHHHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHHHHHHhCCCcEEEEeCCh
Confidence 3334555666555544 99999999999999999874 4555554 4444444332 3 3577888887
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.......++||+|++...+. +...+++++.++|||||.+++..+
T Consensus 100 ~~~~~~~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 100 PEGLDDLPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp TTTCTTSCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhhhcCCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 55444447899999987662 678899999999999999999865
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=121.51 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=79.2
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCC-----CCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPS-----RAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd-----~sFDlV~~s~~ 291 (637)
+.+|||||||+|.++..|++.+..++.+ |+++.+++.++++. .++.+...|...+++.. ..||+|+++.+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFPRVIGL---DVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSSCEEEE---ESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 4589999999999999999885434444 55666777776654 36788888877765432 34999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++|+..++...++.++.++|||||++++..+
T Consensus 134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 134 FHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp STTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9888765788999999999999999988864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-11 Score=116.92 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLP 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lp 277 (637)
..+.+.+.+.++ ++ .+|||+|||+|.++..+++. ..++.+ |+++.+++.|++ .+..+.+...+...++
T Consensus 21 ~~~~~~~~~~~~--~~--~~vLdiG~G~G~~~~~l~~~-~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 21 PEWVAWVLEQVE--PG--KRIADIGCGTGTATLLLADH-YEVTGV---DLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHSC--TT--CEEEEESCTTCHHHHHHTTT-SEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHcC--CC--CeEEEecCCCCHHHHHHhhC-CeEEEE---ECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 445555665553 22 48999999999999999887 444433 444455554443 3456888888988888
Q ss_pred CCCCCeeEEEecc-ccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSR-CLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~-~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++ ++||+|++.. +++|+.. ++...+++++.++|||||.+++..+
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 76 8899999986 8877732 1677899999999999999999865
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.7e-12 Score=126.39 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=76.4
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc-C------------------
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER-G------------------ 263 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er-g------------------ 263 (637)
+.+.+++......+.+|||||||+|.++..++..+ |+++|+++.++..+......+. .
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~ 122 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 122 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCc
Confidence 34445543233345589999999998877776664 5666665544443322111000 0
Q ss_pred ----------CCeE-EEEecccc-CCC---CCCCeeEEEeccccccCCc--CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 264 ----------VPAL-IGVMASIR-LPY---PSRAFDMAHCSRCLIPWGQ--YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 264 ----------~~~~-~~~~d~~~-Lpf---pd~sFDlV~~s~~L~h~~~--~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+. +..+|... .|+ ..++||+|+++.+++|... ++...++.++.|+|||||+|++++.
T Consensus 123 ~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 123 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 0122 66777666 344 3679999999999977542 1557899999999999999999964
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=123.28 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=78.8
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc------------CCCeEEE
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER------------GVPALIG 269 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er------------g~~~~~~ 269 (637)
++.+.+.+........+|||+|||+|.++..+++. .++++|+++ .+++.|+++ ...+.+.
T Consensus 21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 95 (313)
T 3bgv_A 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIAD-----VSVKQCQQRYEDMKNRRDSEYIFSAEFI 95 (313)
T ss_dssp HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCH-----HHHHHHHHHHHHHHSSSCC-CCCEEEEE
T ss_pred HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCH-----HHHHHHHHHHHHhhhcccccccceEEEE
Confidence 34444444333223459999999999999999875 345555544 444444432 1257888
Q ss_pred EeccccCC----CC--CCCeeEEEeccccccCCc--CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 270 VMASIRLP----YP--SRAFDMAHCSRCLIPWGQ--YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~Lp----fp--d~sFDlV~~s~~L~h~~~--~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+|...++ ++ +++||+|+|+.++++... ++...++.++.++|||||.|+++.+
T Consensus 96 ~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 96 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp ECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 88888876 54 459999999999854412 1457899999999999999999876
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-10 Score=110.17 Aligned_cols=106 Identities=9% Similarity=-0.034 Sum_probs=76.7
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPY 278 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lpf 278 (637)
...+.+.+...++ .+|||+|||+|.++..+++++..++.+ |+++.+++.|+++ +. ++.+...|......
T Consensus 44 ~~~~l~~l~~~~~--~~vLDlGcG~G~~~~~la~~~~~v~~v---D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 118 (204)
T 3njr_A 44 RALTLAALAPRRG--ELLWDIGGGSGSVSVEWCLAGGRAITI---EPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA 118 (204)
T ss_dssp HHHHHHHHCCCTT--CEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred HHHHHHhcCCCCC--CEEEEecCCCCHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence 3345555555554 499999999999999999886544444 4455555555433 44 48888888776333
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....||+|++...+ +.. ++.++.++|||||.+++...
T Consensus 119 ~~~~~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 119 DLPLPEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp TSCCCSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred cCCCCCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 34579999987644 566 99999999999999999865
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=119.12 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=77.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEecc-ccCCCC-CCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLPYP-SRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~-~~Lpfp-d~sFDlV~~s~~L~h~~ 296 (637)
+.+|||||||+|.++..|++.+..++.+ |+++.+++.++++..++.+...|. ..+|++ +++||+|+++.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------ 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAARWAAY---DFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------ 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC------
Confidence 3499999999999999999987666666 777788888888877789999998 678888 89999999972
Q ss_pred cCCHHHHHHHHHhcccCCeEEEE
Q 006633 297 QYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
+...++.++.++|||||.++.
T Consensus 120 --~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 120 --GPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp --CCSGGGGGHHHHEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCcEEEE
Confidence 566789999999999999993
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-11 Score=120.34 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=81.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCcc------ccHHHHHHHHHHcC--CCeEEEE
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPR------DTHEAQVQFALERG--VPALIGV 270 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~------Dls~a~i~~A~erg--~~~~~~~ 270 (637)
....+.+.+...++ .+|||||||+|.++..++++ .++++|+++. .+..++.+ ....+ ..+.+..
T Consensus 31 ~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~-~~~~~~~~~v~~~~ 107 (275)
T 3bkx_A 31 HRLAIAEAWQVKPG--EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH-LLAGPLGDRLTVHF 107 (275)
T ss_dssp HHHHHHHHHTCCTT--CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHH-HHTSTTGGGEEEEC
T ss_pred HHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHH-HHhcCCCCceEEEE
Confidence 34455555555554 49999999999999999876 2455566553 33333222 22233 2477887
Q ss_pred ec---cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 271 MA---SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 271 ~d---~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.| ...+|+++++||+|++..+++|+. +...+++.+.++++|||++++...
T Consensus 108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAHSLWYFA--SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp SCCTTTCCGGGTTCCCSEEEEESCGGGSS--CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CChhhhccCCCCCCCEEEEEEccchhhCC--CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 77 556778889999999999998887 677777777777788999999864
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=119.38 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecccc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR 275 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~ 275 (637)
....+.+.++.......+|||||||+|.++..++++ +..++.+ |++ .+++.|+++ +. .+.+...|...
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGV---DWA-SVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEE---ECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEE---ecH-HHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 344555555440022459999999999999999887 5555555 556 666655543 32 37888888877
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.+++++ ||+|++..+++||.+++...+++++.++|||||++++..+.
T Consensus 227 ~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 227 VDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp SCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 777755 99999999999887435679999999999999999998653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=117.82 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=86.1
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeEE-EEeccccCC---CCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALI-GVMASIRLP---YPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~~-~~~d~~~Lp---fpd~sFDlV~~s~~ 291 (637)
+.+|||||||||.++..|++++ |+++|+++.++. .+.+....+.. ...+...++ ++..+||+|++..+
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~-----~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLV-----WKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSC-----HHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHH-----HHHHhCcccceecccCceecchhhCCCCCCCEEEEEee
Confidence 4599999999999999998874 667777665554 33333333322 222333333 34456999999887
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC-Cccccc---cCCCCchhhhHHhHhhHHHHHHHhceeee
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV-NWESHW---KGWNRTTEDLKSEQNGIETIARSLCWKKL 359 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~-~w~~~~---~~w~~t~e~l~~~~~~ie~la~~l~w~~v 359 (637)
++++ ..+|.++.|+|||||.|++...|. +..... .+.-+.........+++..++...+|...
T Consensus 161 f~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 161 FISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp SSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred HhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 7543 569999999999999999974322 111111 12333445555667778888888999654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=113.80 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=88.3
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
+.+|||||||+|.++..|+++ .++++|+++.++.... +.|+ ..+. ++.+..+|...+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 348999999999999999987 3677777766555322 1222 2233 688999999999998777 877743
Q ss_pred ccc---c--cCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCch-hhhHHhHhhHHHHHHHhceeeec
Q 006633 290 RCL---I--PWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTT-EDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 290 ~~L---~--h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~-e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
... + |.. +...+++++.|+|||||.++++.....|........... .......+.+..+....+|+...
T Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 106 MPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp SCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 322 1 333 568899999999999999999754333322111100000 01111223477778888886543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=117.41 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=78.6
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+|||||||+|.++..+++. +..++.+ |+++.+++.|.++...+.+...+...+|+++++||+|++..+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence 458999999999999999987 5566666 6677888888888877889999998999999999999986542
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
..+.++.|+|||||.+++..+.
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcC
Confidence 1579999999999999999763
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=111.01 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=73.2
Q ss_pred CCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCC--CCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP--YPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lp--fpd~sFDlV~~s~~ 291 (637)
..+|||||||+|.++..+++. + ++++|+++..+..+..+.. ..+ .++.+..+|...++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL-EVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHH-HcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 348999999999999999876 3 5555554433333322222 223 36888888888877 77889999999865
Q ss_pred cccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. +|... ....++.++.++|||||.+++...
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 4 44320 125799999999999999999853
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-10 Score=105.25 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~ 273 (637)
+.....+.+.+...++ .+|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+ +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~-~~~~d~ 84 (178)
T 3hm2_A 11 QHVRALAISALAPKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAVCF---EISEERRERILSNAINLGVSDRI-AVQQGA 84 (178)
T ss_dssp HHHHHHHHHHHCCCTT--EEEEEESTTTTHHHHHHHTTSSSEEEEEE---CSCHHHHHHHHHHHHTTTCTTSE-EEECCT
T ss_pred HHHHHHHHHHhcccCC--CeEEEeCCCCCHHHHHHHHHCCCCeEEEE---eCCHHHHHHHHHHHHHhCCCCCE-EEecch
Confidence 3344555666655444 49999999999999999887 4444444 4555566555543 33 35 555554
Q ss_pred -ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 -IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 -~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++..+++||+|++...+++ ..+++++.++|||||.+++...
T Consensus 85 ~~~~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 85 PRAFDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp TGGGGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred HhhhhccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 333433388999999988854 3489999999999999999864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=111.90 Aligned_cols=108 Identities=14% Similarity=0.045 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lp 277 (637)
.....+.+.+...++ .+|||+|||+|.++..|++.+..++.+ |+++.+++.|+++ + .++.+...|....+
T Consensus 64 ~~~~~~~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 64 YMVARMTELLELTPQ--SRVLEIGTGSGYQTAILAHLVQHVCSV---ERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCC--CEEEEEcCCCCHHHHHHHHhCCEEEEE---ecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 445566666665554 499999999999999999885444444 4444555554432 3 35788888887776
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.++++||+|++..+++|+. + ++.++|||||++++..++
T Consensus 139 ~~~~~~D~i~~~~~~~~~~--~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIP--T------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSBCSSCC--T------HHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEEccchhhhh--H------HHHHhcccCcEEEEEEcC
Confidence 6778999999999886666 2 689999999999999763
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=132.19 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=75.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc----chhh-ccccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~----~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
...|||+|||+|+|+-+++..+- -.|+.+|.++..+..+.+. |+- -+++ |..+.+.....+||+|-++-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46899999999999998876653 2456667777788777664 332 1221 22121222347899998865
Q ss_pred c-cccC-------CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEe
Q 006633 549 I-FSLY-------KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 549 l-fs~~-------~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
- |+.. ...-+...++.++-|+|+|||.++++-.......-.+.+....++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i 679 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEI 679 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeee
Confidence 3 3211 1123456789999999999999999854421111233444455554443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=113.14 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCC--CCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLP--YPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lp--fpd~sFDlV~~s 289 (637)
..+|||||||+|.++..|++. +..++++ |+++.+++.|.+ .+. ++.+..+|+..++ +++++||.|++.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gi---D~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGI---ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEE---EechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 348999999999999999886 4444444 445555555443 343 5888888888776 788999999986
Q ss_pred cccccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
... +|... ....++.++.++|||||.|++...
T Consensus 116 ~~~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 116 FSD-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp SCC-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCC-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 543 44420 136799999999999999999863
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=112.24 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccCCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLPYP 279 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~Lpfp 279 (637)
...+.+.+.+...++. +|||||||+|.++..|++.+..++.+ |+++.+++.++++.. ++.+...|......+
T Consensus 57 ~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSV---EINEKMYNYASKLLSYYNNIKLILGDGTLGYEE 131 (231)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEEE---eCCHHHHHHHHHHHhhcCCeEEEECCccccccc
Confidence 4455666666555444 99999999999999999875444444 555666666665422 678888887663334
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+++||+|++..+++|+. .++.++|||||.+++..++
T Consensus 132 ~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLL--------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcC
Confidence 67899999999987665 4689999999999999763
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-10 Score=108.03 Aligned_cols=115 Identities=11% Similarity=0.025 Sum_probs=84.2
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
+.+|||+|||+|.++..|++++ .++++ |+++.+++. ..++.+..+|... ++++++||+|+++..+++..+.
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~-~v~gv---D~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN-TVVST---DLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS-EEEEE---ESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCC
T ss_pred CCeEEEeccCccHHHHHHHhcC-cEEEE---ECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcc
Confidence 3499999999999999999987 55555 667677665 3456777888766 6677899999999888544321
Q ss_pred -------CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 299 -------ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 299 -------d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+...++.++.+.| |||.+++..+.. ...+.+.++.+..+|+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------GCHHHHHHHHHHTTCEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------CCHHHHHHHHHHCCCcEEE
Confidence 2357889999999 999999986411 0123466677777886543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-10 Score=103.87 Aligned_cols=136 Identities=11% Similarity=0.027 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~L 276 (637)
+...+.+.+.+...++ .+|||+|||+|.++..+++.+..++.+ |+++.+++.++++ + .++.+...|...
T Consensus 21 ~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKD--DVVVDVGCGSGGMTVEIAKRCKFVYAI---DYLDGAIEVTKQNLAKFNIKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEESCCCSHHHHHHHTTSSEEEEE---ECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-
T ss_pred HHHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHHcCCCcEEEEECCccc-
Confidence 4555666777665444 499999999999999999865444444 4444455444433 3 357888888766
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
++++++||+|+++.+ . +...++.++.++ |||.+++..+. ... ..++.+..+..+|
T Consensus 95 ~~~~~~~D~i~~~~~-----~-~~~~~l~~~~~~--~gG~l~~~~~~-------------~~~----~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT-----K-NIEKIIEILDKK--KINHIVANTIV-------------LEN----AAKIINEFESRGY 149 (183)
T ss_dssp HGGGCCCSEEEECSC-----S-CHHHHHHHHHHT--TCCEEEEEESC-------------HHH----HHHHHHHHHHTTC
T ss_pred cccCCCCcEEEECCc-----c-cHHHHHHHHhhC--CCCEEEEEecc-------------ccc----HHHHHHHHHHcCC
Confidence 667789999999876 3 788999999999 99999998751 111 2335556667777
Q ss_pred eeecccCcEEEE
Q 006633 357 KKLIQKKDLAIW 368 (637)
Q Consensus 357 ~~v~~~~~~aIW 368 (637)
..........-+
T Consensus 150 ~~~~~~~~~~~~ 161 (183)
T 2yxd_A 150 NVDAVNVFISYA 161 (183)
T ss_dssp EEEEEEEEEEEE
T ss_pred eEEEEEeeeehh
Confidence 555443333333
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-10 Score=115.51 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=82.7
Q ss_pred CCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+|||+|||+|.++..+++.+ ++++|+++..+..+..+ +..++..+.+...+.... +++++||+|+++...+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n-~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~--- 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-AKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE--- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHH-HHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH---
T ss_pred CCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH---
Confidence 4599999999999999998875 56677766555544433 233454467776665442 4567899999976442
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
....++.++.++|||||++++++... ...+.+...+++.+|+.+.
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~~~-----------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGILK-----------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------GGHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEeecc-----------------CCHHHHHHHHHHCCCEEEE
Confidence 34679999999999999999986411 1134466677777887654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=107.84 Aligned_cols=122 Identities=16% Similarity=0.048 Sum_probs=81.7
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccC-CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRL-PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~L-pfpd~sFDlV~~s~~ 291 (637)
+.+|||+||| +|.++..+++. +..++.+ |+++.+++.|+ ..+.++.+..+|...+ ++++++||+|+++..
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTAT---EVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEE---ECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 4599999999 99999999887 5444333 44444444443 3355788888886433 566789999999876
Q ss_pred cccCCcC-----------------CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHh
Q 006633 292 LIPWGQY-----------------ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 354 (637)
Q Consensus 292 L~h~~~~-----------------d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l 354 (637)
+++.... ....+++++.++|||||.+++..+. .. .....+....++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------~~----~~~~~~~~~l~~~ 196 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD------------KE----KLLNVIKERGIKL 196 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES------------CH----HHHHHHHHHHHHT
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc------------cH----hHHHHHHHHHHHc
Confidence 6443210 1378999999999999999997641 11 1233456667777
Q ss_pred ceeee
Q 006633 355 CWKKL 359 (637)
Q Consensus 355 ~w~~v 359 (637)
+|...
T Consensus 197 g~~~~ 201 (230)
T 3evz_A 197 GYSVK 201 (230)
T ss_dssp TCEEE
T ss_pred CCceE
Confidence 77543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.8e-10 Score=111.89 Aligned_cols=119 Identities=17% Similarity=0.124 Sum_probs=80.5
Q ss_pred CcccHHHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CC--CeEE
Q 006633 197 FPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALI 268 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~--~~~~ 268 (637)
|..+.+.. .+..+++.. ++ .+|||+|||+|.++..+++++. .++.+ |+++.+++.|+++ +. .+.+
T Consensus 31 ~~~~~d~~--ll~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v~gv---Di~~~~~~~a~~n~~~~~~~~~v~~ 103 (259)
T 3lpm_A 31 FSFSIDAV--LLAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKAKIVGV---EIQERLADMAKRSVAYNQLEDQIEI 103 (259)
T ss_dssp BCCCHHHH--HHHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCCEEEEE---CCSHHHHHHHHHHHHHTTCTTTEEE
T ss_pred ccCcHHHH--HHHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCCcEEEE---ECCHHHHHHHHHHHHHCCCcccEEE
Confidence 34455544 355555544 43 4999999999999999998732 33344 4445555544432 33 3788
Q ss_pred EEeccccCC--CCCCCeeEEEeccccccC-----Cc-------------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 269 GVMASIRLP--YPSRAFDMAHCSRCLIPW-----GQ-------------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 269 ~~~d~~~Lp--fpd~sFDlV~~s~~L~h~-----~~-------------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...|...++ +++++||+|+++..+.+. .. .+...++.++.++|||||.|++..+
T Consensus 104 ~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 104 IEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp ECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 888887765 567899999998655332 00 0245799999999999999999865
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.1e-10 Score=118.35 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=79.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cC--CCeEEEEeccccCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RG--VPALIGVMASIRLP 277 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg--~~~~~~~~d~~~Lp 277 (637)
..+.+.++... ..+|||||||+|.++..++++ +..++.+ |+ +.+++.|++ .+ ..+.+...|.. .+
T Consensus 192 ~~l~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~ 264 (369)
T 3gwz_A 192 GQVAAAYDFSG--AATAVDIGGGRGSLMAAVLDAFPGLRGTLL---ER-PPVAEEARELLTGRGLADRCEILPGDFF-ET 264 (369)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TC
T ss_pred HHHHHhCCCcc--CcEEEEeCCCccHHHHHHHHHCCCCeEEEE---cC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CC
Confidence 33444444333 459999999999999999887 4455544 44 445554443 23 35888888876 56
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++. .||+|++..++++|.+++...+|+++.++|||||+|++..+
T Consensus 265 ~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 265 IPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 666 89999999999888842334899999999999999999864
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=111.73 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHH----cCC---CeEEEEe
Q 006633 201 ADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGV---PALIGVM 271 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~e----rg~---~~~~~~~ 271 (637)
.+.+.+.+.+.+... .+ .+|||+|||+|.++..++.++. .++.+ |+++.+++.|++ .+. .+.+..+
T Consensus 37 ~~~~~~~l~~~l~~~~~~--~~vLDlGcGtG~~~~~~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 111 (201)
T 2ift_A 37 GDRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQAKKVTFL---ELDKTVANQLKKNLQTLKCSSEQAEVINQ 111 (201)
T ss_dssp -CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred HHHHHHHHHHHHHHhcCC--CeEEEcCCccCHHHHHHHHccCCEEEEE---ECCHHHHHHHHHHHHHhCCCccceEEEEC
Confidence 344455555555432 33 4899999999999998777642 33333 444455544443 343 6788888
Q ss_pred ccccCCC--CCCC-eeEEEeccccccCCcCCHHHHHHHH--HhcccCCeEEEEEeCCC
Q 006633 272 ASIRLPY--PSRA-FDMAHCSRCLIPWGQYADGLYLIEV--DRVLRPGGYWILSGPPV 324 (637)
Q Consensus 272 d~~~Lpf--pd~s-FDlV~~s~~L~h~~~~d~~~~L~ei--~RvLKPGG~Lvls~pp~ 324 (637)
|...+.. ++++ ||+|++...+ +.. +...++.++ .|+|||||.++++..+.
T Consensus 112 d~~~~~~~~~~~~~fD~I~~~~~~-~~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 112 SSLDFLKQPQNQPHFDVVFLDPPF-HFN--LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CHHHHTTSCCSSCCEEEEEECCCS-SSC--HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CHHHHHHhhccCCCCCEEEECCCC-CCc--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8766432 4678 9999998875 433 677889999 77899999999987543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=119.11 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCC-CC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP-YP 279 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lp-fp 279 (637)
.+.+.++... ...+|||||||+|.++..++++ + ++++|+ +..+..+.. ...+.+. .+.+...|....+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARK-TIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHH-HHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHH-HHHhcCCCCceEEEeCCcccCcccC
Confidence 3444444333 1459999999999999999886 3 445555 433332222 2223333 4788888877765 23
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchh----------hhHHhHhhHHH
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTE----------DLKSEQNGIET 349 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e----------~l~~~~~~ie~ 349 (637)
.+.||+|++..+++||.+++...+++++.++|||||++++..+...-.... .+..... ......+++++
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 324 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVT-PALSADFSLHMMVNTNHGELHPTPWIAG 324 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSS-SHHHHHHHHHHHHHSTTCCCCCHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC-CchHHHhhHHHHhhCCCCCcCCHHHHHH
Confidence 456999999999999985345899999999999999999986422110000 0000000 00112345778
Q ss_pred HHHHhceeeeccc---CcEEEEeccC
Q 006633 350 IARSLCWKKLIQK---KDLAIWQKPT 372 (637)
Q Consensus 350 la~~l~w~~v~~~---~~~aIWqKP~ 372 (637)
+.++.+|+.+... ..+.+-+||.
T Consensus 325 ll~~aGf~~~~~~~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 325 VVRDAGLAVGERSIGRYTLLIGQRSS 350 (352)
T ss_dssp HHHHTTCEEEEEEETTEEEEEEECCC
T ss_pred HHHHCCCceeeeccCceEEEEEecCC
Confidence 8888899877521 1245556663
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=117.21 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=74.0
Q ss_pred CCEEEEECCCCch----HHHHHhhc------CCEEEEcCccccHHHHHHHHHHcC-------------------------
Q 006633 219 IRTAIDTGCGVAS----WGAYLMSR------NILAVSFAPRDTHEAQVQFALERG------------------------- 263 (637)
Q Consensus 219 ~r~VLDIGCGtG~----~a~~La~~------~v~~vdisp~Dls~a~i~~A~erg------------------------- 263 (637)
..+|||+|||+|. ++..|++. +..++.+ |+++.+++.|+++.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~at---Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~ 182 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFAS---DIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 182 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEE---ESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEE---ECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCC
Confidence 3589999999997 56666654 2333333 55666666666531
Q ss_pred -----------CCeEEEEeccccCCCC-CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 264 -----------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 264 -----------~~~~~~~~d~~~Lpfp-d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
..+.|...|....|++ .+.||+|+|..+++|+.++...+++.++.++|||||+|++.
T Consensus 183 ~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 183 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1367788887776665 67899999999998887544589999999999999999985
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.9e-10 Score=110.50 Aligned_cols=92 Identities=9% Similarity=0.069 Sum_probs=69.8
Q ss_pred CCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCCCC---CCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYP---SRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lpfp---d~sFDlV 286 (637)
+.+|||||||+|.++..|+.. + ++++|+++ .+++.|++ .+. ++.+..++...++++ +++||+|
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN-----KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCH-----HHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence 459999999999999998843 3 45555544 44444432 343 588888888887764 6899999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++..+ . +...++.++.++|||||.|++..
T Consensus 146 ~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 146 TARAV----A--RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEECC----S--CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEecc----C--CHHHHHHHHHHhcCCCCEEEEEe
Confidence 99652 2 78899999999999999999873
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-10 Score=115.09 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCC---chHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccc
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGV---ASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASI 274 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGt---G~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~ 274 (637)
.+++.+.+.+.... ..++|||||||+ |.++..+.+. +..++.+ |+++.+++.|+++ ...+.+..+|..
T Consensus 63 ~~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~v---D~sp~~l~~Ar~~~~~~~~v~~~~~D~~ 138 (274)
T 2qe6_A 63 KVLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYV---DIDPMVLTHGRALLAKDPNTAVFTADVR 138 (274)
T ss_dssp HHHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEE---ESSHHHHHHHHHHHTTCTTEEEEECCTT
T ss_pred HHHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEE---ECChHHHHHHHHhcCCCCCeEEEEeeCC
Confidence 34444545543221 235999999999 9887666553 3334333 4445566555543 245788888875
Q ss_pred cCC-----------CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLP-----------YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lp-----------fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+ ++..+||+|+++.+++|+.+++...+|+++.++|||||+|+++..
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 421 333589999999999888754589999999999999999999865
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=115.20 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=72.5
Q ss_pred CCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccC-C--CCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRL-P--YPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~L-p--fpd~sFDlV~~s~ 290 (637)
..+|||||||+|.++..|++. + ++++|+++..+..+..+ +.+.+ .++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~-~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS-AHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 448999999999999999976 3 55555544333332222 22334 3688888887764 3 7889999999976
Q ss_pred ccccCCcC-CH------HHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQY-AD------GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~-d~------~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. +|+.. .. ..++.++.|+|||||.|++.+.
T Consensus 114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 55531 11 2599999999999999999864
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-10 Score=121.02 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=77.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccC--CCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL--PYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~L--pfpd~sFDlV~~ 288 (637)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ +. .+.+...|.... |++ ++||+|++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIV---DL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEE---EC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEE---eC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 459999999999999999885 5555555 55 4555555543 32 478888888775 566 78999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++++|.+++...+|+++.++|||||.+++..+
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 9999999854456899999999999999999864
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=119.25 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=76.0
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lpfpd~sFDlV~~s~ 290 (637)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ + ..+.+...|.. .+++. +||+|++..
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 243 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVL---DL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA 243 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEe---cC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence 459999999999999999875 4444444 44 4555544432 3 35888888876 56665 899999999
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||.+++...+++++.++|||||++++..+
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 99999853358999999999999999999865
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-10 Score=108.35 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCC-CCCCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP-YPSRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lp-fpd~sFDlV 286 (637)
+.+|||+|||+|.++..++++ .++++|+ ++.+++.|+++ +. ++.+...|...++ +.+++||+|
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDI-----QDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECS-----CHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence 349999999999999999886 3455555 44454444433 33 5788888887776 667899999
Q ss_pred EeccccccCCc-------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWGQ-------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~~-------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++..+.+... ++...++.++.++|||||++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 99875522110 0345799999999999999999864
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.3e-10 Score=117.69 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=74.4
Q ss_pred CEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+|||||||+|.++..+++++ ++++|+++ .+.. ..+.+...+.. +.+..++...+++++++||+|++..+.++
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-HHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 489999999999999999883 56666652 3322 22333344543 88999999999999999999999765433
Q ss_pred C--CcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 295 W--GQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 295 ~--~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+ .. +...++.++.|+|||||.++..
T Consensus 146 l~~~~-~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 146 LFYES-MLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTC-CHHHHHHHHHHHEEEEEEEESC
T ss_pred ccCch-hHHHHHHHHHHhCCCCCEEccc
Confidence 2 23 7889999999999999999754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=108.03 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEecccc
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR 275 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~ 275 (637)
..+...+.+.+.+......+.+|||+|||+|.++..+++++..++.+ |+++.+++.|+++ +.++.+...|...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 99 (171)
T 1ws6_A 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLV---EKDPEAVRLLKENVRRTGLGARVVALPVEV 99 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEE---CCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEE---eCCHHHHHHHHHHHHHcCCceEEEeccHHH
Confidence 34556666666665321123489999999999999999886544444 4455555555432 3367788777655
Q ss_pred -CC-C--CCCCeeEEEeccccccCCcCCHHHHHHHHH--hcccCCeEEEEEeCCC
Q 006633 276 -LP-Y--PSRAFDMAHCSRCLIPWGQYADGLYLIEVD--RVLRPGGYWILSGPPV 324 (637)
Q Consensus 276 -Lp-f--pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~--RvLKPGG~Lvls~pp~ 324 (637)
++ + ..++||+|+++..++ . +...+++.+. ++|||||.+++..++.
T Consensus 100 ~~~~~~~~~~~~D~i~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 100 FLPEAKAQGERFTVAFMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred HHHhhhccCCceEEEEECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 22 1 134799999988763 2 5566777777 9999999999987643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=126.46 Aligned_cols=122 Identities=14% Similarity=0.048 Sum_probs=88.1
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHH--H----HHHcC--
Q 006633 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQ--F----ALERG-- 263 (637)
Q Consensus 196 ~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~--~----A~erg-- 263 (637)
.+++.....+..+.+.+.+.++. +|||||||+|.++..++.. + ++++|+++..+..+... . +...+
T Consensus 153 vYGEt~~~~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~ 230 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred ccCCCCHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35555666777788877766655 9999999999999988864 2 66676655333322221 1 11223
Q ss_pred -CCeEEEEeccccCCCCC--CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 264 -VPALIGVMASIRLPYPS--RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 264 -~~~~~~~~d~~~Lpfpd--~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++.+..+|+..+|+++ ..||+|+++..+ ++. +....|.++.|+|||||.|++..+
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~p--dl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGP--EVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCH--HHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccc-cCc--hHHHHHHHHHHcCCCCcEEEEeec
Confidence 35889999998888754 479999998765 444 788899999999999999998743
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=101.83 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIR 275 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~ 275 (637)
......+.+.+...++ .+|||+|||+|.++..+++....++.+ |+++.+++.+++ .+. .+.+...+...
T Consensus 19 ~~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVYAI---DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEESCTTSHHHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHhcCEEEEE---ECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 4445556666655544 499999999999999999875333333 344444444443 233 57777777655
Q ss_pred CCCCC-CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPS-RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++ ++||+|++...++ +...++.++.++|+|||.+++..+
T Consensus 94 -~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp -HHTTSCCEEEEEESCCTT-----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hcccCCCCCEEEECCchH-----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 3333 5899999987653 567899999999999999999865
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-10 Score=106.52 Aligned_cols=121 Identities=12% Similarity=-0.024 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEec
Q 006633 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMA 272 (637)
Q Consensus 198 ~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d 272 (637)
....+.+.+.+.+.+... ..+.+|||+|||+|.++..+++++ ++++|+++..+..+..+.. ..+. .+.+...|
T Consensus 25 rp~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d 102 (187)
T 2fhp_A 25 RPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-ITKEPEKFEVRKMD 102 (187)
T ss_dssp CCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESC
T ss_pred CcCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH-HhCCCcceEEEECc
Confidence 334566677777776421 124499999999999999888764 4555554433332222221 2232 47788887
Q ss_pred cccC----CCCCCCeeEEEeccccccCCcCCHHHHHHHH--HhcccCCeEEEEEeCC
Q 006633 273 SIRL----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEV--DRVLRPGGYWILSGPP 323 (637)
Q Consensus 273 ~~~L----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei--~RvLKPGG~Lvls~pp 323 (637)
.... ++++++||+|++...+ +.. +....+..+ .++|||||.+++..+.
T Consensus 103 ~~~~~~~~~~~~~~fD~i~~~~~~-~~~--~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 103 ANRALEQFYEEKLQFDLVLLDPPY-AKQ--EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCG-GGC--CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HHHHHHHHHhcCCCCCEEEECCCC-Cch--hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 6552 2336789999998775 333 567778888 9999999999998753
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-10 Score=117.10 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~L 276 (637)
..+.+.+.+.+...++ .+|||||||+|.++..+++.+ ++++|+++ ++..+ .+.....+ ..+.+..++...+
T Consensus 50 ~~~~~~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQA-MDIIRLNKLEDTITLIKGKIEEV 125 (340)
T ss_dssp HHHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhhhhcCC--CEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHH-HHHHHHcCCCCcEEEEEeeHHHh
Confidence 3344556655554444 499999999999999999874 56666653 33322 22233334 3588888999999
Q ss_pred CCCCCCeeEEEeccc---cccCCcCCHHHHHHHHHhcccCCeEEEE
Q 006633 277 PYPSRAFDMAHCSRC---LIPWGQYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 277 pfpd~sFDlV~~s~~---L~h~~~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
++++++||+|++..+ +.+ .. +...++.++.|+|||||.++.
T Consensus 126 ~~~~~~~D~Ivs~~~~~~l~~-~~-~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 126 HLPVEKVDVIISEWMGYFLLF-ES-MLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CCSCSCEEEEEECCCBTTBTT-TC-HHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcEEEEEEcCchhhccC-HH-HHHHHHHHHHhhcCCCcEEEc
Confidence 998899999999763 322 22 677899999999999999983
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=110.74 Aligned_cols=121 Identities=15% Similarity=0.017 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEec
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP---SRAFDMAHCS 289 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfp---d~sFDlV~~s 289 (637)
.+.+|||||||+|..+..|+.. + ++++|+++..+..+.... .+.+. ++.+..++...++.. +++||+|++.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAI-EVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 3559999999999999988865 3 555555443333222221 22344 588888888877653 4899999996
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
.+ . +...+++++.++|||||+|++.... .. .++...+....+.++++...
T Consensus 159 a~----~--~~~~ll~~~~~~LkpgG~l~~~~g~-----------~~----~~e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 159 AV----A--PLCVLSELLLPFLEVGGAAVAMKGP-----------RV----EEELAPLPPALERLGGRLGE 208 (249)
T ss_dssp SS----C--CHHHHHHHHGGGEEEEEEEEEEECS-----------CC----HHHHTTHHHHHHHHTEEEEE
T ss_pred Cc----C--CHHHHHHHHHHHcCCCeEEEEEeCC-----------Cc----HHHHHHHHHHHHHcCCeEEE
Confidence 43 2 6788999999999999999886421 11 12344566667777876543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.2e-10 Score=117.04 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=82.6
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpf 278 (637)
.+.+.+.++..+ ..+|||||||+|.++..++++ + ++++|+ +..+..+..+.. +.+. .+.+...|....++
T Consensus 179 ~~~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~ 254 (359)
T 1x19_A 179 IQLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKESY 254 (359)
T ss_dssp HHHHHHHCCCTT--CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTSCC
T ss_pred HHHHHHhcCCCC--CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccCCC
Confidence 344555554433 459999999999999999886 3 466666 544444433332 2233 38888889888777
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++. |+|++..++++|.+++...+++++.++|||||.+++..+
T Consensus 255 ~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 255 PEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 654 999999999999853478899999999999999988763
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=108.41 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-----C-CCeEEEEeccccC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G-VPALIGVMASIRL 276 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-----g-~~~~~~~~d~~~L 276 (637)
..+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ + ..+.+...|....
T Consensus 86 ~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 86 SAMVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVESY---EARPHHLAQAERNVRAFWQVENVRFHLGKLEEA 160 (258)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred HHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 4555666555544 9999999999999999876 3344444 4444454444433 3 4578888888888
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++++||+|++. +. +...++.++.++|||||.+++..+
T Consensus 161 ~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 161 ELEEAAYDGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCCcCEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8888899999983 33 566899999999999999999876
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=106.76 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCC---CCCCeeEEEeccccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY---PSRAFDMAHCSRCLI 293 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpf---pd~sFDlV~~s~~L~ 293 (637)
.+.+|||||||. + . .|+++.+++.|+++.. .+.+..++...+++ ++++||+|+|+.+++
T Consensus 12 ~g~~vL~~~~g~-----------v---~---vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------S---P---VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp TTSEEEEEECTT-----------S---C---HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred CCCEEEEecCCc-----------e---e---eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 355999999996 1 1 3889999998887742 47888889888887 889999999999997
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
|+.. +...+++++.|+|||||+|++..|....... ..|..+ .+++....+..+|
T Consensus 75 ~~~~-~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-~~~~~~-------~~~~~~~l~~aGf 128 (176)
T 2ld4_A 75 STTL-HSAEILAEIARILRPGGCLFLKEPVETAVDN-NSKVKT-------ASKLCSALTLSGL 128 (176)
T ss_dssp CCCC-CCHHHHHHHHHHEEEEEEEEEEEEEESSSCS-SSSSCC-------HHHHHHHHHHTTC
T ss_pred hccc-CHHHHHHHHHHHCCCCEEEEEEccccccccc-ccccCC-------HHHHHHHHHHCCC
Confidence 7734 7899999999999999999997652221110 112222 2345666777777
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=108.50 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEecc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~ 273 (637)
.+..++.+.+.++ . ...+|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ +. ++.+...|.
T Consensus 95 te~l~~~~l~~~~-~--~~~~vLDlG~GsG~~~~~la~~~~~~~v~~v---D~s~~~l~~a~~n~~~~~~~~v~~~~~d~ 168 (276)
T 2b3t_A 95 TECLVEQALARLP-E--QPCRILDLGTGTGAIALALASERPDCEIIAV---DRMPDAVSLAQRNAQHLAIKNIHILQSDW 168 (276)
T ss_dssp HHHHHHHHHHHSC-S--SCCEEEEETCTTSHHHHHHHHHCTTSEEEEE---CSSHHHHHHHHHHHHHHTCCSEEEECCST
T ss_pred HHHHHHHHHHhcc-c--CCCEEEEecCCccHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEEcch
Confidence 4556666666654 2 2348999999999999999865 3334444 4444555544432 43 478887776
Q ss_pred ccCCCCCCCeeEEEeccccccC-------------Cc----------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPW-------------GQ----------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~-------------~~----------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ++++++||+|+++..++.. +. +....++.++.++|||||++++..+
T Consensus 169 ~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 169 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 55 3446789999998544222 10 1346789999999999999999853
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.6e-10 Score=114.52 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=72.2
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHH-Hhhc-CCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCCCCCCC
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAY-LMSR-NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRA 282 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~-La~~-~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lpfpd~s 282 (637)
.++.+.++. +|||||||+|.+++. +++. +..++.+ |+++.+++.|+++ + .++.+..+|+..+| +++
T Consensus 116 ~la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~gI---Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~ 188 (298)
T 3fpf_A 116 ALGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNVV---EIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLE 188 (298)
T ss_dssp HHTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEEE---ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCC
T ss_pred HHcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEEE---ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCC
Confidence 344555544 999999999987654 4442 4444444 4445555555433 4 36888888888875 789
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|++... .+ +...+++++.|+|||||.|++...
T Consensus 189 FDvV~~~a~----~~-d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 189 FDVLMVAAL----AE-PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CSEEEECTT----CS-CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCEEEECCC----cc-CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 999998653 23 889999999999999999999863
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-10 Score=107.82 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHH----cCC-CeEEEEecc
Q 006633 201 ADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGV-PALIGVMAS 273 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~ 273 (637)
.+...+.+.+.+... .+ .+|||+|||+|.++..++.++. .++.+ |+++.+++.|++ .+. ++.+...|.
T Consensus 38 ~~~~~~~l~~~l~~~~~~--~~vLDlgcG~G~~~~~l~~~~~~~V~~v---D~s~~~l~~a~~~~~~~~~~~v~~~~~D~ 112 (202)
T 2fpo_A 38 TDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAAGATLI---EMDRAVSQQLIKNLATLKAGNARVVNSNA 112 (202)
T ss_dssp CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred HHHHHHHHHHHHHhhcCC--CeEEEeCCCcCHHHHHHHhcCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 455556666666532 33 4899999999999998777642 33444 444455554443 333 678888887
Q ss_pred cc-CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 274 IR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~-Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
.. ++..+++||+|++...+ +.. +...++.++.+ +|||||.++++..
T Consensus 113 ~~~~~~~~~~fD~V~~~~p~-~~~--~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 113 MSFLAQKGTPHNIVFVDPPF-RRG--LLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHSSCCCCEEEEEECCSS-STT--THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHhhcCCCCCEEEECCCC-CCC--cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 66 56667899999998765 433 67788888865 6999999999865
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-10 Score=122.11 Aligned_cols=121 Identities=13% Similarity=0.083 Sum_probs=81.3
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cCC----C
Q 006633 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV----P 265 (637)
Q Consensus 196 ~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg~----~ 265 (637)
+...+.+.-.+.+.+.++...+ .+|||+|||+|.++..++++ +..++.+ |+++.+++.+++ .+. .
T Consensus 202 Fs~~~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~p~~~V~gv---D~s~~al~~Ar~n~~~ngl~~~~~ 276 (375)
T 4dcm_A 202 FSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFV---DESPMAVASSRLNVETNMPEALDR 276 (375)
T ss_dssp TTCSSCCHHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHCGGGGGG
T ss_pred ccCCcccHHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHCCCCEEEEE---ECcHHHHHHHHHHHHHcCCCcCce
Confidence 3333445545556666655443 59999999999999999987 3333333 334444444432 232 3
Q ss_pred eEEEEeccccCCCCCCCeeEEEeccccccC---CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPW---GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 266 ~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~---~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+...|... ++++++||+|+++..+++. .......++.++.++|||||.++++.+
T Consensus 277 v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 277 CEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp EEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 6777777765 5678899999999888542 121234689999999999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-10 Score=102.99 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=70.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+.+|||+|||+|.++..+++. .++++|+++ ... ...+.+...|...++ +++++||+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 349999999999999998876 355666655 321 145777888887776 77889999
Q ss_pred EEeccccccCCcCCH-----------HHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQYAD-----------GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~d~-----------~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+++..+++.. +. ..++.++.++|||||.+++..+
T Consensus 92 i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 92 VMSDMAPNMSG--TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEECCCCCCCS--CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCccccC--CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99988874433 33 6899999999999999999865
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=107.55 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhcC-CEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecc
Q 006633 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (637)
Q Consensus 202 ~~~i~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~~-v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~ 273 (637)
+...+.+.+.+. ... +.+|||+|||+|.++..+++++ ..++.+ |+++.+++.|+++ +. .+.+...|.
T Consensus 16 ~~~~~~~~~~l~~~~~--~~~vLDlGcG~G~~~~~l~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 90 (177)
T 2esr_A 16 DKVRGAIFNMIGPYFN--GGRVLDLFAGSGGLAIEAVSRGMSAAVLV---EKNRKAQAIIQDNIIMTKAENRFTLLKMEA 90 (177)
T ss_dssp --CHHHHHHHHCSCCC--SCEEEEETCTTCHHHHHHHHTTCCEEEEE---CCCHHHHHHHHHHHHTTTCGGGEEEECSCH
T ss_pred HHHHHHHHHHHHhhcC--CCeEEEeCCCCCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECcH
Confidence 344555656654 233 3499999999999999999874 244444 4555555555432 33 377877776
Q ss_pred cc-CCCCCCCeeEEEeccccccCCcCCHHHHHHHHH--hcccCCeEEEEEeCC
Q 006633 274 IR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVD--RVLRPGGYWILSGPP 323 (637)
Q Consensus 274 ~~-Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~--RvLKPGG~Lvls~pp 323 (637)
.. ++..++.||+|+++..+ +.. .....+..+. ++|||||.+++..+.
T Consensus 91 ~~~~~~~~~~fD~i~~~~~~-~~~--~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 91 ERAIDCLTGRFDLVFLDPPY-AKE--TIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHHHHHBCSCEEEEEECCSS-HHH--HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HHhHHhhcCCCCEEEECCCC-Ccc--hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 65 34445679999998765 222 4566777777 999999999998753
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=115.32 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=76.4
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH--Hc--CCCeEEEEeccccCCCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL--ER--GVPALIGVMASIRLPYPS 280 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~--er--g~~~~~~~~d~~~Lpfpd 280 (637)
.+.+.++..+ ..+|||||||+|.++..++++ ++.++.+ |+..... .+. +. ...+.+...|.. .++|
T Consensus 175 ~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~-~~~~~~~~~~~~v~~~~~d~~-~~~p- 246 (348)
T 3lst_A 175 ILARAGDFPA--TGTVADVGGGRGGFLLTVLREHPGLQGVLL---DRAEVVA-RHRLDAPDVAGRWKVVEGDFL-REVP- 246 (348)
T ss_dssp HHHHHSCCCS--SEEEEEETCTTSHHHHHHHHHCTTEEEEEE---ECHHHHT-TCCCCCGGGTTSEEEEECCTT-TCCC-
T ss_pred HHHHhCCccC--CceEEEECCccCHHHHHHHHHCCCCEEEEe---cCHHHhh-cccccccCCCCCeEEEecCCC-CCCC-
Confidence 3444444433 459999999999999999885 4555555 5443222 111 01 124788888875 4555
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|++..+++||.+++...+|+++.++|||||+|++...
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 89999999999999852337999999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=107.09 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~----Lpfpd~sFDlV~~s~ 290 (637)
+.+|||+|||+|.++..|++. .++++|+++.++. .+.+.|.++ .++.+...|... .+++ ++||+|+++.
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH-HHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 449999999999999998875 2566666543322 234455444 356677777655 3454 7899999973
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. .+. +...++.++.|+|||||.|+++.
T Consensus 135 -~--~~~-~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 135 -A--QKN-QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp -C--STT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -c--Chh-HHHHHHHHHHHHhCCCCEEEEEE
Confidence 2 122 35566999999999999999985
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.9e-10 Score=116.94 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=78.9
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLPY 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lpf 278 (637)
.+.+.++... ..+|||||||+|.++..++++ ++.++.+ |+ +.+++.|++ .+. .+.+...|... ++
T Consensus 173 ~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 245 (374)
T 1qzz_A 173 APADAYDWSA--VRHVLDVGGGNGGMLAAIALRAPHLRGTLV---EL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL 245 (374)
T ss_dssp HHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHHhCCCCC--CCEEEEECCCcCHHHHHHHHHCCCCEEEEE---eC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC
Confidence 3444444333 459999999999999999887 4555555 55 555555543 233 47888888754 44
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. .||+|++..+++||.+++...+++++.++|||||++++..+
T Consensus 246 ~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 246 PV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp SC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 44 39999999999888842335899999999999999999765
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=105.24 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=74.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----C-CCeEEEEecccc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIR 275 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~ 275 (637)
....+.+.+...++ .+|||||||+|.++..+++.. ..++.+ |+++.+++.++++ + .++.+...+...
T Consensus 65 ~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 139 (215)
T 2yxe_A 65 MVGMMCELLDLKPG--MKVLEIGTGCGYHAAVTAEIVGEDGLVVSI---ERIPELAEKAERTLRKLGYDNVIVIVGDGTL 139 (215)
T ss_dssp HHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHHTCTTEEEEESCGGG
T ss_pred HHHHHHHhhCCCCC--CEEEEECCCccHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 44556666655544 499999999999999998763 344444 4444455444432 3 347777777643
Q ss_pred CCCC-CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYP-SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfp-d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++ +++||+|++..+++|+. .++.++|||||.+++..+
T Consensus 140 -~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 140 -GYEPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp -CCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred -CCCCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 333 67899999999986655 488999999999999876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-09 Score=113.78 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L 276 (637)
..+.+.+.+.+...++ .+|||||||+|.++..+++++ ++++|+++ +.. ...+.....+. .+.+...+...+
T Consensus 36 ~~y~~~i~~~l~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ-HAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHH-HHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCc--CEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHH-HHHHHHHHcCCCCcEEEEEcchhhC
Confidence 4455666666655444 499999999999999998874 56666653 322 22223333443 588888888888
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++ ++||+|++..+++|+..++....+.++.++|||||.+++..
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 766 67999999988888875467788899999999999998653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-09 Score=108.24 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=78.5
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-----C---CCeEEEEecc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G---VPALIGVMAS 273 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-----g---~~~~~~~~d~ 273 (637)
+..+.+.+...++. +|||+|||+|.++..|++. +..++.+ |+++.+++.|+++ + .++.+...|.
T Consensus 88 ~~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 88 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 34555666555544 9999999999999999875 4444444 4444454444432 2 3688888898
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...++++++||+|++. .. ++..++.++.++|||||.+++..+
T Consensus 163 ~~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 163 ADSELPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GGCCCCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred HhcCCCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8888888899999983 23 566799999999999999999876
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=113.07 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=82.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~~Lpfp 279 (637)
...+.+.++..+ .+|||||||+|.++..++++ .++++|+ +..+..+........ ...+.+...|... +++
T Consensus 157 ~~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 157 FHEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp HHHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC
T ss_pred HHHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC
Confidence 344444444333 59999999999999999876 3667777 666655444332221 2357888888766 565
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|++..+++||.+++...+++++.++|||||++++..+
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 679999999999989853445999999999999999999864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.2e-10 Score=110.62 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHH-----HcC-CCeEEEEecccc-CC--CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFAL-----ERG-VPALIGVMASIR-LP--YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~-----erg-~~~~~~~~d~~~-Lp--fpd~sFDl 285 (637)
..+|||||||+|.++..|++. + ++++|+++.++..+..+... ..+ .++.+..+|+.. ++ +++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 348999999999999999986 3 45555544333332222111 022 368888888876 66 78899999
Q ss_pred EEeccccccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|++...- +|... ....+++++.++|||||.|++...
T Consensus 127 v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 127 MFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9876533 44310 014799999999999999999854
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-10 Score=118.26 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=76.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||||||+|.++..|+++ ++.++.+ |+ +.+++.+.+. ..+.+..+|... |++.+ |+|++..++|||.
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 275 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINF---DL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWS 275 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEE---eh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCC
Confidence 469999999999999999886 5666666 55 4566555433 468888888776 77754 9999999999998
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++...+|+++.++|||||++++...
T Consensus 276 ~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 276 DEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 64456899999999999999999864
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=113.52 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHH----cCC-CeEEEEec
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMA 272 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d 272 (637)
...+.+.+.+...++. +|||||||+|.++..+++. . ++++|+++ .+++.|++ .+. ++.+...|
T Consensus 62 ~~~~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~g~~~v~~~~~d 134 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR-----KICEIAKRNVERLGIENVIFVCGD 134 (317)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCH-----HHHHHHHHHHHHcCCCCeEEEECC
Confidence 4455666676655544 9999999999999999876 2 66666654 44444433 243 47888888
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....+.++++||+|++..+++|+. .++.++|||||.+++...
T Consensus 135 ~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 135 GYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred hhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 877655678899999999987665 578899999999999854
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=110.35 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=90.6
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEE
Q 006633 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (637)
Q Consensus 195 ~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~ 269 (637)
.+|..........+.+.+ .+ +.+|||+|||+|.++..+++.+ ++++|+++..+..+..+ +..++.. +.+.
T Consensus 106 ~~f~~~~~~~~~~l~~~~--~~--~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n-~~~n~~~~~v~~~ 180 (278)
T 2frn_A 106 IMFSPANVKERVRMAKVA--KP--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN-IHLNKVEDRMSAY 180 (278)
T ss_dssp SCCCGGGHHHHHHHHHHC--CT--TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHH-HHHTTCTTTEEEE
T ss_pred eeEcCCcHHHHHHHHHhC--CC--CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEE
Confidence 334344334444555543 23 3499999999999999999874 45555544333322222 2223443 7788
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHH
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 349 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~ 349 (637)
.+|...++. +++||+|++.... ....++.++.++|||||.+++...... ........+.+..
T Consensus 181 ~~D~~~~~~-~~~fD~Vi~~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~~~i~~ 242 (278)
T 2frn_A 181 NMDNRDFPG-ENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPE-----------KLMPREPFETFKR 242 (278)
T ss_dssp CSCTTTCCC-CSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEG-----------GGTTTTTHHHHHH
T ss_pred ECCHHHhcc-cCCccEEEECCch------hHHHHHHHHHHHCCCCeEEEEEEeecc-----------ccccccHHHHHHH
Confidence 888888776 7889999986432 456789999999999999999754110 0000122345677
Q ss_pred HHHHhceeeec
Q 006633 350 IARSLCWKKLI 360 (637)
Q Consensus 350 la~~l~w~~v~ 360 (637)
.++..+|+...
T Consensus 243 ~~~~~G~~~~~ 253 (278)
T 2frn_A 243 ITKEYGYDVEK 253 (278)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHcCCeeEE
Confidence 78888886543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-10 Score=117.61 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||||||+|.++..|+++ ++.++.+ |+ +.+++.|++. ..+.+...|... +++. ||+|++..+++||.
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINF---DL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS 281 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEe---Ch-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC
Confidence 459999999999999999987 5666666 66 5666655442 458888888766 6665 99999999999898
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++...+|+++.++|||||.|++..
T Consensus 282 d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4222399999999999999999985
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-10 Score=110.17 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHc----CCCeEEEEec
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALER----GVPALIGVMA 272 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d 272 (637)
.+..++.+.+.+... ..+.+|||+|||+|.++..++++ + ++++|+++. +++.|+++ +.++.+...|
T Consensus 14 ~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~d 87 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMD-----ALAVARRNAERFGAVVDWAAAD 87 (215)
T ss_dssp HHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHH
T ss_pred HHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHHHHhCCceEEEEcc
Confidence 344556666666431 23459999999999999999987 3 555655544 44444332 2245666666
Q ss_pred cccCCCCC-----CCeeEEEeccccccCC------cCC------------------HHHHHHHHHhcccCCeE-EEEEe
Q 006633 273 SIRLPYPS-----RAFDMAHCSRCLIPWG------QYA------------------DGLYLIEVDRVLRPGGY-WILSG 321 (637)
Q Consensus 273 ~~~Lpfpd-----~sFDlV~~s~~L~h~~------~~d------------------~~~~L~ei~RvLKPGG~-Lvls~ 321 (637)
... ++++ ++||+|+++..+++.. .+. ...+++++.++|||||+ +++..
T Consensus 88 ~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 88 GIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred hHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 655 5555 8999999976553222 100 16788999999999999 55553
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.9e-10 Score=117.23 Aligned_cols=96 Identities=21% Similarity=0.152 Sum_probs=77.1
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|++. ..+.+...|... |++.+ |+|++..++|+|.
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNF---DL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWS 273 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEe---cC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCC
Confidence 459999999999999999886 5555555 55 4555555433 468888888876 77754 9999999999998
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++...+|+++.++|||||+|++...
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 64567899999999999999999864
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=114.96 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~L 276 (637)
+.+.+.+.+.+.... +.+|||||||+|.++..+++++ ++++|++ .++..+ .+.+...+.. +.+..++...+
T Consensus 49 ~~~~~~i~~~~~~~~--~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFE--GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHHHTTTTTTT--TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHhccccCC--CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcCCCCeEEEEECchhhc
Confidence 334444544433333 4599999999999999999884 5666665 344333 2333344543 78999999998
Q ss_pred CCCCCCeeEEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++ ++||+|++..+.+.... .+...++.++.++|||||.+++..
T Consensus 125 ~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 125 SLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred CcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 887 88999999765433321 168889999999999999998863
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-10 Score=121.29 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=72.1
Q ss_pred CCEEEEECCC------CchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC------CC
Q 006633 219 IRTAIDTGCG------VASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP------SR 281 (637)
Q Consensus 219 ~r~VLDIGCG------tG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp------d~ 281 (637)
..+||||||| +|..+..++++ .++++|+++.+. ....++.+.++|...+||. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4599999999 66666666543 477788877541 2345789999999998887 78
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|+|.. .+++. +...+|+++.|+|||||+|++.+.
T Consensus 288 sFDlVisdg-sH~~~--d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDG-SHINA--HVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECS-CCCHH--HHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECC-cccch--hHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999975 33443 788999999999999999999864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-09 Score=106.09 Aligned_cols=105 Identities=17% Similarity=0.268 Sum_probs=77.6
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC-C-eEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-P-ALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~-~-~~~~~~d~~~ 275 (637)
...+...+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ +. + +.+...|...
T Consensus 82 ~~~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 82 AALIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVSY---EIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred HHHHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEEE---ecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 34566666555544 9999999999999999887 4555555 4455555555443 43 3 7888888764
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++++||+|++. .+ +...++.++.++|||||.+++..+
T Consensus 157 -~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 157 -GIEEENVDHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp -CCCCCSEEEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred -ccCCCCcCEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 3778899999983 33 567799999999999999999875
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=110.43 Aligned_cols=103 Identities=12% Similarity=0.137 Sum_probs=74.1
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-----C-CCeEEEEeccccCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G-VPALIGVMASIRLP 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-----g-~~~~~~~~d~~~Lp 277 (637)
.+.+.+...++ .+|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ + .++.+...|... +
T Consensus 101 ~~~~~~~~~~~--~~VLD~G~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~ 174 (275)
T 1yb2_A 101 YIIMRCGLRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVV---ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-F 174 (275)
T ss_dssp -----CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEEE---CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-C
T ss_pred HHHHHcCCCCc--CEEEEecCCCCHHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-c
Confidence 34445544444 49999999999999999876 4455555 4555555555443 3 357888888766 6
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|++ +.+ +...+++++.++|||||.+++..+
T Consensus 175 ~~~~~fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 175 ISDQMYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CCSCCEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CcCCCccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 77789999998 344 677899999999999999999976
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.1e-10 Score=117.75 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=81.7
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccc
Q 006633 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274 (637)
Q Consensus 199 ~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~ 274 (637)
...+...+.+.+.+.... ..+|||+|||+|.++..++++ .++++|+++..+..+..+. ...+....+...|..
T Consensus 179 ~~~d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~ 255 (343)
T 2pjd_A 179 DGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVF 255 (343)
T ss_dssp SSCCHHHHHHHHHSCTTC--CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTT
T ss_pred CCCcHHHHHHHHhcCcCC--CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEcccc
Confidence 333444555666664333 348999999999999999876 3667766554333333222 234556667666654
Q ss_pred cCCCCCCCeeEEEeccccccC---CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPW---GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~---~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. +.+++||+|+++..+++. ..++...++.++.|+|||||.+++..+
T Consensus 256 ~--~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 256 S--EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp T--TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred c--cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 4 347899999999988531 221567899999999999999999865
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-09 Score=103.95 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=67.6
Q ss_pred CCEEEEECCCCchHHHHHhhc-C-CEEEEcCccccHHHHHHHHHHc---CCCeEEEEecccc----CCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIR----LPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~-v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~----Lpfpd~sFDlV~~s 289 (637)
+.+|||+|||+|.++..|++. + ..++++ |+++.+++.+.++ ..++.+...|... ++++ ++||+|++
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~- 149 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAI---EYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE- 149 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEE---ESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE-
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEE---ECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE-
Confidence 449999999999999999886 2 344444 4455555555433 2467888888777 7776 78999993
Q ss_pred cccccCCcC-CHHHHHHHHHhcccCCeEEEEE
Q 006633 290 RCLIPWGQY-ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 290 ~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++... ....++.++.++|||||.+++.
T Consensus 150 ----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 ----DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ----CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 33310 2277899999999999999997
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=109.76 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=65.2
Q ss_pred CCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHH---H----HcCC-CeEEEEeccccCCCC-CCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFA---L----ERGV-PALIGVMASIRLPYP-SRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A---~----erg~-~~~~~~~d~~~Lpfp-d~sFDl 285 (637)
+.+|||||||+|.++..|+++ + ++++|+++. .+++.| + +.+. ++.+..++...+|.. .+.+|.
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~----~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKE----NLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADS 100 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCG----GGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHH----HHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEE
Confidence 448999999999999999854 3 556666532 232222 2 2343 588888998888632 256676
Q ss_pred EEeccccc----cCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 286 AHCSRCLI----PWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 286 V~~s~~L~----h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|+++.... ++.. +...++.++.|+|||||.|++.
T Consensus 101 i~~~~~~~~~~~~~~~-~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIK-PNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp EEEESCCHHHHHHHHT-TCHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEeCCCcHHhhhhhc-chHHHHHHHHHhcCCCcEEEEE
Confidence 66654221 1111 3456899999999999999994
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-09 Score=110.86 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L 276 (637)
..+.+.+.+.+...++. +|||||||+|.++..+++++ ++++|+++ .+.. ..+.+.+.+. .+.+...+...+
T Consensus 24 ~~y~~ai~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-AKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-HHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhHhhcCCC--EEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHH-HHHHHHHcCCCCCEEEEECchhhc
Confidence 44555555555444444 99999999999999999874 56666652 3222 2223333443 478888899888
Q ss_pred CCCCCCeeEEEeccccccCC-cCCHHHHHHHHHhcccCCeEEEE
Q 006633 277 PYPSRAFDMAHCSRCLIPWG-QYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~-~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
++++++||+|++....+++. ......++.++.++|||||.++.
T Consensus 100 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88888999999985443322 11678899999999999999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=113.86 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=77.8
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcC-ccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFA-PRDTHEAQVQFALERGV--PALIGVMASIRLPYPSR 281 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdis-p~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~ 281 (637)
.+.+.++... ..+|||||||+|.++..++++ ++.+++++ +..+..+..+. ...+. .+.+...|... +++.
T Consensus 174 ~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~- 248 (360)
T 1tw3_A 174 APAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PLPR- 248 (360)
T ss_dssp HHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSS-
T ss_pred HHHHhCCCcc--CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHH-HhcCCCCceEEEeCCCCC-CCCC-
Confidence 3444444433 459999999999999999886 45555552 43333322222 22333 57888888654 4444
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.||+|++..+++||.+++...+++++.++|||||++++..+.
T Consensus 249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 499999999998888423358999999999999999998753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=104.53 Aligned_cols=107 Identities=13% Similarity=0.003 Sum_probs=74.1
Q ss_pred HHHHHHHHhcccC-CCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHH----cCC-CeEEEEecc
Q 006633 204 YIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMAS 273 (637)
Q Consensus 204 ~i~~L~~lL~~~~-g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~ 273 (637)
+.+.+.+.+.... ..+.+|||+|||+|.++..++.. + ++++|++ +.+++.+++ .+. ++.+...+.
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~ 124 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSL-----GKRVRFLRQVQHELKLENIEPVQSRV 124 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESC-----HHHHHHHHHHHHHTTCSSEEEEECCT
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCC-----HHHHHHHHHHHHHcCCCCeEEEecch
Confidence 3444444443221 12348999999999999999875 3 4555554 444444433 343 478888887
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++ +.++||+|++... . +...++.++.++|+|||.+++...
T Consensus 125 ~~~~-~~~~~D~i~~~~~----~--~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 125 EEFP-SEPPFDGVISRAF----A--SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp TTSC-CCSCEEEEECSCS----S--SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred hhCC-ccCCcCEEEEecc----C--CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7765 5678999998542 2 678899999999999999999843
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-09 Score=104.76 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lp 277 (637)
......+.+.+...++. +|||||||+|.++..|++. .++++|+++..+..+..... ..+ .++.+...|. ..+
T Consensus 77 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~~ 152 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SKG 152 (235)
T ss_dssp HHHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-ccC
Confidence 33455666666555544 8999999999999999886 46666665433332222222 223 2577777776 455
Q ss_pred CCCC-CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSR-AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~-sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++ .||+|++..++.++. .++.++|||||.+++..+
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIP--------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCccEEEECCcHHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 6554 499999998886555 478999999999999876
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.3e-09 Score=106.95 Aligned_cols=117 Identities=14% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEc-CccccHHHHHHHH----HHcCC------Ce
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSF-APRDTHEAQVQFA----LERGV------PA 266 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdi-sp~Dls~a~i~~A----~erg~------~~ 266 (637)
.....+.+.+...... +.+|||+|||+|.++..+++.+ ++++|+ ++..+..+..+.. ...+. .+
T Consensus 64 ~~~l~~~l~~~~~~~~--~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v 141 (281)
T 3bzb_A 64 ARALADTLCWQPELIA--GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP 141 (281)
T ss_dssp HHHHHHHHHHCGGGTT--TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred HHHHHHHHHhcchhcC--CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence 4445555555443333 3499999999999999998874 445555 3433332222210 11111 34
Q ss_pred EEEEeccccCC--C----CCCCeeEEEeccccccCCcCCHHHHHHHHHhccc---C--CeEEEEEe
Q 006633 267 LIGVMASIRLP--Y----PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLR---P--GGYWILSG 321 (637)
Q Consensus 267 ~~~~~d~~~Lp--f----pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLK---P--GG~Lvls~ 321 (637)
.+...+..... + ++++||+|+++.+++|.. +...++.++.++|+ | ||.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred EEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 44433322210 1 357899999999986655 78999999999999 9 99887764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=101.79 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=67.8
Q ss_pred CEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecccc-CCCC--CCCeeEEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LPYP--SRAFDMAH 287 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~-Lpfp--d~sFDlV~ 287 (637)
.+|||||||+|..+..|++. +..++.+ |+++.+++.|+++ +. .+.+..+|+.. ++.. .++||+|+
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTL---EADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 49999999999999999986 4344433 4444444444432 43 47888888755 3432 34899999
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+... .. +...+++++.++|||||++++...
T Consensus 142 ~d~~----~~-~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDAD----KP-NNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECSC----GG-GHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECCc----hH-HHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8542 22 667899999999999999999754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=103.77 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=98.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcccccc---CCCC-CccceeeeccccccC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM---STYP-RTYDLIHADSIFSLY 553 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~---~~yp-~t~Dl~H~~~lfs~~ 553 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.+++.+.....-.+.+ ...+ .+||+|.+..++.
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-- 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-- 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh--
Confidence 48999999999999999998865 6677788888999999996654443111222 2234 5699999987777
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------------------------HHHHHHHHHHhcCCceeEE
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRDDV--------------------------------DILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------------------------~~~~~~~~~~~~~~W~~~~ 601 (637)
..+...+|-++-|+|||||++++.+.. -....+.++++.-.+++..
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 346689999999999999999997531 0457788888888888875
Q ss_pred eccCCCCC---CcceEEEEEec
Q 006633 602 ADHENGPR---QREKILFANKK 620 (637)
Q Consensus 602 ~~~e~~~~---~~~~~l~~~K~ 620 (637)
+.....+. ...-+++++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 206 LQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EECCCCTTCSSCSCEEEEEEEC
T ss_pred EecCCCCCCCCceeEEEEeecC
Confidence 43221111 13567777774
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-09 Score=102.94 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=72.7
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcC------CCeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg------~~~~~~~~d~~~ 275 (637)
.+.+.+......+.+|||+|||+|.++..|++. .++++|+++..+..+..... ..+ .++.+...|...
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR-KDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hhcccccCCCcEEEEECCccc
Confidence 444555412223459999999999999998875 35555554433332222211 212 257888888776
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.+.++++||+|++...+.++. .++.++|||||.++++.++
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 666678899999988775444 6889999999999998753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-10 Score=116.26 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
+.+|||+|||+|.++..|++.+..++.+ |+++.+++.|++ .++ ++.+..+|...++ ++++||+|+++..+
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAI---DIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 3499999999999999999986544444 445555554443 343 6888888887776 66899999999988
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++.. +....+.++.++|+|||.+++.
T Consensus 155 ~~~~--~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGPD--YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSGG--GGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCcc--hhhhHHHHHHhhcCCcceeHHH
Confidence 6655 4555788999999999997765
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-09 Score=106.98 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=75.6
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeEEEE-eccccC---CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGV-MASIRL---PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~~~~-~d~~~L---pfpd~sFDlV~~s~~ 291 (637)
+.+|||||||+|.++..|++++ ++++|+++.++. .|+++........ .+...+ .++...||.+.+..+
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~-----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v 112 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLA-----WKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVS 112 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCC-----HHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHH-----HHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEE
Confidence 4599999999999999999885 455666555444 4544433322211 111111 112222455555444
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccc-----cCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHW-----KGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~-----~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+.++ ..++.++.|+|||||.|++...|. +...+ .+..+.........+++.++++..+|+...
T Consensus 113 ~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~-~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 113 FISL-----DLILPPLYEILEKNGEVAALIKPQ-FEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp SSCG-----GGTHHHHHHHSCTTCEEEEEECHH-HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred hhhH-----HHHHHHHHHhccCCCEEEEEECcc-cccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 4333 459999999999999999974211 11100 111112233334556788888888997543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=107.27 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=76.7
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC-------C--CeEEEEeccccC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-------V--PALIGVMASIRL 276 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg-------~--~~~~~~~d~~~L 276 (637)
|..+++... +.+|||+|||+|.++..|+++ +..++.+ |+++.+++.|+++. . .+.+...|...+
T Consensus 28 L~~~~~~~~--~~~VLDlG~G~G~~~l~la~~~~~~~v~gv---Di~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 28 LASLVADDR--ACRIADLGAGAGAAGMAVAARLEKAEVTLY---ERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp HHHTCCCCS--CEEEEECCSSSSHHHHHHHHHCTTEEEEEE---ESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred HHHHhcccC--CCEEEEeCChHhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 444544433 348999999999999999887 2334444 55566666666542 2 277888887766
Q ss_pred -------CCCCCCeeEEEeccccccC----------------CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 -------PYPSRAFDMAHCSRCLIPW----------------GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 -------pfpd~sFDlV~~s~~L~h~----------------~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++++||+|+++..+... .......+++++.++|||||.|++..+
T Consensus 103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3677899999998544221 111467899999999999999999865
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.8e-10 Score=111.95 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=70.7
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecc---ccCCCCCCCee
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRLPYPSRAFD 284 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~---~~Lpfpd~sFD 284 (637)
.+++|+ +|||+|||+|.++..|++. .|.++|+++.++..+. +.+.+ ..++.....+. ...++..+++|
T Consensus 74 ~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~-~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 74 PVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRD-RRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTT-CTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred CCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHh-hcCeeEEEEeccCccccccccceEE
Confidence 355555 9999999999999999986 2667777554433221 12212 23556655554 33467778999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|++.. +.+. +...++.++.|+|||||.++++.
T Consensus 150 vVf~d~---~~~~-~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 150 GLYADV---AQPE-QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEECC---CCTT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEec---cCCh-hHHHHHHHHHHhccCCCEEEEEE
Confidence 999753 3333 67889999999999999999974
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.4e-10 Score=107.59 Aligned_cols=110 Identities=12% Similarity=0.212 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASI 274 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~ 274 (637)
.+.+.+.+...++. ..+|||+|||+|.++..++.. ++.++.+ |+++.+++++++ .|+...+...+..
T Consensus 36 ld~fY~~~~~~l~~----~~~VLDlGCG~GplAl~l~~~~p~a~~~A~---Di~~~~leiar~~~~~~g~~~~v~~~d~~ 108 (200)
T 3fzg_A 36 LNDFYTYVFGNIKH----VSSILDFGCGFNPLALYQWNENEKIIYHAY---DIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200)
T ss_dssp HHHHHHHHHHHSCC----CSEEEEETCTTHHHHHHHHCSSCCCEEEEE---CSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred HHHHHHHHHhhcCC----CCeEEEecCCCCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence 45555666666532 348999999999999999766 4444444 556666666553 3555344445554
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.. .+.++||+|+...++|++ + +.+..+.++.+.|||||.|+-.
T Consensus 109 ~~-~~~~~~DvVLa~k~LHlL-~-~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 109 SD-VYKGTYDVVFLLKMLPVL-K-QQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HH-HTTSEEEEEEEETCHHHH-H-HTTCCHHHHHHTCEEEEEEEEE
T ss_pred cc-CCCCCcChhhHhhHHHhh-h-hhHHHHHHHHHHhCCCCEEEEe
Confidence 43 466889999999999777 5 7777778999999999988765
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.4e-09 Score=102.67 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=73.1
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecccc
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIR 275 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~ 275 (637)
..+..++...++ .+|||||||+|.++..|++. + ++++|+++ .+++.|++ .+. .+.+...|...
T Consensus 61 ~~l~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (232)
T 3ntv_A 61 DLIKQLIRMNNV--KNILEIGTAIGYSSMQFASISDDIHVTTIERNE-----TMIQYAKQNLATYHFENQVRIIEGNALE 133 (232)
T ss_dssp HHHHHHHHHHTC--CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCH-----HHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHhhcCC--CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence 344444444443 49999999999999999983 3 45555544 44444433 343 58888888755
Q ss_pred C-C-CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 276 L-P-YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 276 L-p-fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. + ..+++||+|++... .. +...+++++.++|||||.|++..
T Consensus 134 ~~~~~~~~~fD~V~~~~~----~~-~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 134 QFENVNDKVYDMIFIDAA----KA-QSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp CHHHHTTSCEEEEEEETT----SS-SHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhhccCCccEEEEcCc----HH-HHHHHHHHHHHhcCCCeEEEEee
Confidence 3 3 34689999997642 22 67789999999999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.9e-09 Score=103.16 Aligned_cols=91 Identities=18% Similarity=0.121 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchHHHHHhhcC---------CEEEEcCccccHHHHHHHHHHc----C------CCeEEEEeccccCC--
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---------ILAVSFAPRDTHEAQVQFALER----G------VPALIGVMASIRLP-- 277 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---------v~~vdisp~Dls~a~i~~A~er----g------~~~~~~~~d~~~Lp-- 277 (637)
+.+|||||||+|.++..|++.. ++++|+ ++.+++.|+++ + .++.+...|.....
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~-----~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLER-----VKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE 155 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEES-----CHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeC-----CHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence 3499999999999999998752 445555 44444444432 2 36788888877765
Q ss_pred --CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 --YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 --fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...++||+|++...++++. .++.++|||||.+++..+
T Consensus 156 ~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 5567899999998775443 788999999999999865
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=106.89 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchHHHHHhhc------CCEEEEcCccccHHHHHHHHHHc-------CC--C------------------
Q 006633 219 IRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALER-------GV--P------------------ 265 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~------~v~~vdisp~Dls~a~i~~A~er-------g~--~------------------ 265 (637)
..+|||+|||+|.++..++++ .++++|+++ .+++.|+++ +. .
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~-----~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDP-----APLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE 126 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCH-----HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCH-----HHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchh
Confidence 458999999999999998875 355665554 444444321 11 0
Q ss_pred -------eE-------------EEEeccccCCC-----CCCCeeEEEeccccccCCc-------CCHHHHHHHHHhcccC
Q 006633 266 -------AL-------------IGVMASIRLPY-----PSRAFDMAHCSRCLIPWGQ-------YADGLYLIEVDRVLRP 313 (637)
Q Consensus 266 -------~~-------------~~~~d~~~Lpf-----pd~sFDlV~~s~~L~h~~~-------~d~~~~L~ei~RvLKP 313 (637)
+. +...|...... ..++||+|+|+..+++... +....++.++.++|||
T Consensus 127 ~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 206 (250)
T 1o9g_A 127 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 206 (250)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred hhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence 23 77777655321 3458999999876654432 1345899999999999
Q ss_pred CeEEEEEeC
Q 006633 314 GGYWILSGP 322 (637)
Q Consensus 314 GG~Lvls~p 322 (637)
||+++++..
T Consensus 207 gG~l~~~~~ 215 (250)
T 1o9g_A 207 HAVIAVTDR 215 (250)
T ss_dssp TCEEEEEES
T ss_pred CcEEEEeCc
Confidence 999999654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-09 Score=101.97 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=72.7
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----------CCEEEEcCccccHHHHHHHHHHc-----CCCeEEE
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALER-----GVPALIG 269 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----------~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~ 269 (637)
...+.+.+......+.+|||||||+|.++..|++. .++++|+++..+..+........ ..++.+.
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 34455555311222449999999999999988874 35566665433333322222111 2357788
Q ss_pred EeccccCCCCC-CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 270 VMASIRLPYPS-RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~Lpfpd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..|... ++++ ++||+|++...++++. .++.++|||||.+++...
T Consensus 151 ~~d~~~-~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 151 EGDGRK-GYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp ESCGGG-CCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred ECCccc-CCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 777765 5554 7899999998885544 689999999999999865
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-09 Score=114.28 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHH--HHHHHHH----cC---CCeEE
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA--QVQFALE----RG---VPALI 268 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a--~i~~A~e----rg---~~~~~ 268 (637)
...+..+.+.+...++. +|||||||+|.++..|++. .++++|+++..+..+ |++.+++ .+ .++.+
T Consensus 228 p~~v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 34455566666555544 9999999999999999885 266677665443333 3222232 34 35677
Q ss_pred EEeccccC--CC--CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 269 GVMASIRL--PY--PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 269 ~~~d~~~L--pf--pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++.... ++ ..++||+|+++..+ +. + +...+|.++.++|||||.+++..+
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~-~-d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL-FD-E-DLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT-CC-H-HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEcCccccccccccccCCCCEEEEeCcc-cc-c-cHHHHHHHHHHhCCCCeEEEEeec
Confidence 66554322 12 24789999997666 33 3 788899999999999999999753
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-08 Score=103.51 Aligned_cols=104 Identities=20% Similarity=0.261 Sum_probs=75.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~L 276 (637)
..+...+...++. +|||+|||+|.++..++++ +..++.+ |+++.+++.|+++ +. .+.+...|....
T Consensus 102 ~~i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 102 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAY---EKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEE---CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 4555566555544 9999999999999999876 3444444 4455555555433 43 577777777665
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|++. .+ ++..++.++.++|||||.+++..+
T Consensus 177 -~~~~~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 177 -FDEKDVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp -CSCCSEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred -ccCCccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 677889999984 23 566799999999999999999875
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-09 Score=103.59 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=70.1
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---LPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~---Lpfpd~sFDlV~~s~ 290 (637)
+.+|||+|||+|.++..|+++ .++++|+++..+ +.+++.|..+ .++.+..+|... +++.+++||+|++..
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 449999999999999999876 245555544222 2344555554 568888888766 455678999999965
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. ... ....++.++.++|||||.++++.+
T Consensus 156 ~---~~~-~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 156 A---QPD-QTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp C---CTT-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---Ccc-HHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3 221 345568899999999999999754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=107.90 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=68.8
Q ss_pred CEEEEECCCCchHHHHHhhc------C--CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR------N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPS-RAFDMAH 287 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L---pfpd-~sFDlV~ 287 (637)
.+|||||||+|..+..|++. + |+++|+++..+. .|+....++.+..+|.... ++.+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~-----~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHH-----HHhccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 48999999999999998874 3 566777665443 3323335688888888764 5433 4799999
Q ss_pred eccccccCCcCCHHHHHHHHHh-cccCCeEEEEEe
Q 006633 288 CSRCLIPWGQYADGLYLIEVDR-VLRPGGYWILSG 321 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~R-vLKPGG~Lvls~ 321 (637)
+... | . +...++.++.| +|||||+|++..
T Consensus 158 ~d~~--~--~-~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 158 IDNA--H--A-NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EESS--C--S-SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ECCc--h--H-hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 8654 3 2 67889999998 999999999974
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-09 Score=103.88 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=71.2
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~ 275 (637)
.+..++....+ .+|||||||+|..+..|++. + ++++|+++ .+++.|++ .+. .+.+..+|...
T Consensus 49 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 49 IMDAVIREYSP--SLVLELGAYCGYSAVRMARLLQPGARLLTMEINP-----DCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp HHHHHHHHHCC--SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCH-----HHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHhcCC--CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCh-----HHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 34444443343 48999999999999999984 3 45555544 44444443 233 37888887643
Q ss_pred -CCCC-----CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 -LPYP-----SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 -Lpfp-----d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++.. .++||+|++....+++. +...++.++ ++|||||.+++...
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCC
Confidence 3322 27899999987665554 455677777 99999999998743
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=99.19 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=66.4
Q ss_pred CEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHH----cCC---CeEEEEeccccC-C-CCCCCeeEEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV---PALIGVMASIRL-P-YPSRAFDMAH 287 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~e----rg~---~~~~~~~d~~~L-p-fpd~sFDlV~ 287 (637)
.+|||||||+|..+..|++. +..++.+ |+++.+++.|++ .+. .+.+..+++... + +++++||+|+
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCI---DPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEE---CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 38999999999999999874 3333344 334444444432 343 377887776543 2 4468999999
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+... .. +...+++++.++|||||.+++..
T Consensus 135 ~d~~----~~-~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 135 GQVS----PM-DLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp ECCC----TT-THHHHHHHHHHHEEEEEEEEETT
T ss_pred EcCc----HH-HHHHHHHHHHHHcCCCcEEEEeC
Confidence 8642 22 56779999999999999999964
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.5e-09 Score=102.03 Aligned_cols=105 Identities=18% Similarity=0.080 Sum_probs=75.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYP 279 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lpfp 279 (637)
..+.+.+...++. +|||+|||+|.++..+++.+..++.+ |+++.+++.|+++ + ..+.+...|.....++
T Consensus 81 ~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 81 FYIALKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWTF---EAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---CSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred HHHHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEEE---ecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence 3555565555544 99999999999999998875444444 4455555555443 3 3577777777665436
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++.||+|++. .. ++..++.++.++|||||.+++..+
T Consensus 156 ~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 156 EGIFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TTCBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCcccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7789999983 22 566789999999999999999976
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-09 Score=101.22 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchHHHHHhhc------CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC---------------
Q 006633 219 IRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------------- 277 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~------~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------------- 277 (637)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+...|...++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence 348999999999999999875 25667776521 1234677788877766
Q ss_pred ----------CCCCCeeEEEeccccccCCcC---CH-------HHHHHHHHhcccCCeEEEEEeC
Q 006633 278 ----------YPSRAFDMAHCSRCLIPWGQY---AD-------GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 ----------fpd~sFDlV~~s~~L~h~~~~---d~-------~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|++..++ |+... +. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 567899999998776 44210 22 2378999999999999999753
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-09 Score=111.76 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=74.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|++. ..+.+...|... ++++ ||+|++..+++||.
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVF---DR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT 260 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEe---eC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCC
Confidence 359999999999999999976 4555555 66 5666666443 347888888755 6663 99999999999998
Q ss_pred cCCHHHHHHHHHhcccC---CeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRP---GGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKP---GG~Lvls~p 322 (637)
+++...+|+++.++||| ||++++..+
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 42223999999999999 999999864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=106.56 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEeccccCCC--CCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRLPY--PSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~Lpf--pd~sF 283 (637)
..+|||||||+|.++..+++. .++++|+ ++.+++.|+++. ..+.+...|...++. ++++|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi-----d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDI-----DGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEES-----CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEEC-----CHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCce
Confidence 459999999999999999976 2455555 445555554432 457888888766553 47899
Q ss_pred eEEEeccccccCCcCC--HHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYA--DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d--~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|++.......+... ...+++++.|+|||||.|++...
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999976552222111 16899999999999999999854
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-08 Score=103.56 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=80.1
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEeccccCCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYP 279 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d~~~Lpfp 279 (637)
.+.+.++... .++|||||||+|.++..++++ ++.++.+ |+ +..++.|+++ ...+.+..+|....|++
T Consensus 170 ~~~~~~~~~~--~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~---dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~ 243 (353)
T 4a6d_A 170 SVLTAFDLSV--FPLMCDLGGGAGALAKECMSLYPGCKITVF---DI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP 243 (353)
T ss_dssp HHHHSSCGGG--CSEEEEETCTTSHHHHHHHHHCSSCEEEEE---EC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC
T ss_pred HHHHhcCccc--CCeEEeeCCCCCHHHHHHHHhCCCceeEec---cC-HHHHHHHHHhhhhcccCceeeecCccccCCCC
Confidence 3444444333 349999999999999999987 5555544 43 3455555543 13478888887666655
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+|+|++..+||+|.+++...+|+++.+.|+|||.+++...
T Consensus 244 --~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 244 --EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp --CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 47999999999999964556889999999999999999864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=98.76 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=66.4
Q ss_pred CEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccC-C-CC----CCCee
Q 006633 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRL-P-YP----SRAFD 284 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~L-p-fp----d~sFD 284 (637)
.+|||||||+|.++..|++. +..++.+ |+++.+++.|++ .+. .+.+..++.... + +. .++||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITC---DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 38999999999999999986 4333333 334444444433 233 378888776432 2 11 17899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|++.. ... +...+++++.++|||||++++...
T Consensus 143 ~v~~~~----~~~-~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 143 LIYIDA----DKA-NTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEECS----CGG-GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEECC----CHH-HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999654 233 678899999999999999999754
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=106.09 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=76.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhhccccccCC-CC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMST-YP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~~wce~~~~-yp-~t~Dl~H~~~l 549 (637)
...+|||+|||+|.++.+|++.+. .|+.+|.++.++..+.++ |+ +-+++ +..+.. .+ .+||+|-++..
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~--~D~~~~~~~~~~fD~Ii~npp 307 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALH--SDVDEALTEEARFDIIVTNPP 307 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEE--CSTTTTSCTTCCEEEEEECCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEE--cchhhccccCCCeEEEEECCc
Confidence 356899999999999999998864 667777777777776654 22 22222 111221 23 79999999888
Q ss_pred cccCCC--CcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHh
Q 006633 550 FSLYKD--RCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITD 593 (637)
Q Consensus 550 fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~ 593 (637)
|..... .-....++-++-|+|||||.++|..+. .....+++...
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 764322 234568999999999999999997543 23444555444
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.1e-09 Score=114.49 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC-CEEEEcCccccHHHHHHHHH----HcCC--CeEEEEecccc
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIR 275 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~-v~~vdisp~Dls~a~i~~A~----erg~--~~~~~~~d~~~ 275 (637)
.+.+.+.+.+.... +.+|||||||+|.++..+++.+ ..++.+ |+++ +++.|+ +.+. .+.+..++...
T Consensus 145 ~~~~~il~~l~~~~--~~~VLDiGcGtG~la~~la~~~~~~V~gv---D~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 145 TYQRAILQNHTDFK--DKIVLDVGCGSGILSFFAAQAGARKIYAV---EAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHTGGGTT--TCEEEEESCSTTHHHHHHHHTTCSEEEEE---ECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhhhcC--CCEEEEecCcccHHHHHHHHcCCCEEEEE---EcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 34444555544333 3499999999999999998874 244444 4444 444443 3343 48888888888
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++++ ++||+|+++..++|+..++....+.++.++|||||.+++.
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7765 5899999988877776435567788999999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-08 Score=96.16 Aligned_cols=93 Identities=12% Similarity=-0.026 Sum_probs=66.7
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
+.+|||+|||+|.++..+++.+. .++.+ |+++.+++.|+++..++.+...|...++ ++||+|+++..++++..
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAF---DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEE---ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 45999999999999999998743 34444 5566777777766546788888888765 68999999999877764
Q ss_pred CCHHHHHHHHHhcccCCeEEEEE
Q 006633 298 YADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.....++.++.++| |+ +++.
T Consensus 126 ~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp --CHHHHHHHHHHE--EE-EEEE
T ss_pred chhHHHHHHHHHhc--Cc-EEEE
Confidence 23457899999998 55 4444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=102.30 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=73.1
Q ss_pred HHHHHHhc---ccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC
Q 006633 206 DDIGKLIN---LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (637)
Q Consensus 206 ~~L~~lL~---~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp 277 (637)
..+.+.+. +.+ +.+|||+|||+|.++..+++. .|+++|+++.++. ..++.+.++ .++.+...|+....
T Consensus 63 ~~ll~~l~~~~l~~--g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~-~l~~~a~~r-~nv~~i~~Da~~~~ 138 (232)
T 3id6_C 63 GAILKGLKTNPIRK--GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR-ELLLVAQRR-PNIFPLLADARFPQ 138 (232)
T ss_dssp HHHHTTCSCCSCCT--TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHH-HHHHHHHHC-TTEEEEECCTTCGG
T ss_pred HHHHhhhhhcCCCC--CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhc-CCeEEEEcccccch
Confidence 34444443 344 449999999999999998875 3677777664432 234455554 47788888876532
Q ss_pred ---CCCCCeeEEEeccccccCCcCCHHH-HHHHHHhcccCCeEEEEEeC
Q 006633 278 ---YPSRAFDMAHCSRCLIPWGQYADGL-YLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 ---fpd~sFDlV~~s~~L~h~~~~d~~~-~L~ei~RvLKPGG~Lvls~p 322 (637)
...++||+|++.... + +... ++..+.++|||||.|+++..
T Consensus 139 ~~~~~~~~~D~I~~d~a~---~--~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 139 SYKSVVENVDVLYVDIAQ---P--DQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp GTTTTCCCEEEEEECCCC---T--THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhccccceEEEEecCCC---h--hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 124689999997543 3 4444 44566669999999999853
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=101.44 Aligned_cols=107 Identities=13% Similarity=0.198 Sum_probs=75.4
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~L 276 (637)
...+..++...++. +|||+|||+|.++..|++. +..++.+ |+++.+++.|+++ +. .+.+...+....
T Consensus 43 ~~~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 43 MESLLHLLKMAAPA--RILEIGTAIGYSAIRMAQALPEATIVSI---ERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp HHHHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHCTTCEEEEE---CCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred HHHHHHHHhccCCC--EEEEecCCCcHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 33444555444443 9999999999999999887 4444444 4455555555443 43 477887776653
Q ss_pred -CCC--CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 -PYP--SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 -pfp--d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.. +++||+|++.... . +...++.++.++|||||.+++..
T Consensus 118 ~~~~~~~~~fD~I~~~~~~----~-~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 118 GEKLELYPLFDVLFIDAAK----G-QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp HHHHTTSCCEEEEEEEGGG----S-CHHHHHHHHGGGEEEEEEEEEET
T ss_pred HHhcccCCCccEEEECCCH----H-HHHHHHHHHHHHcCCCeEEEEEc
Confidence 432 5789999987643 2 67889999999999999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=97.00 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=66.3
Q ss_pred CEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccC-C-CC---CCCeeE
Q 006633 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRL-P-YP---SRAFDM 285 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~L-p-fp---d~sFDl 285 (637)
.+|||||||+|.++..|++. +..++.+ |+++.+++.|++ .+. .+.+..+|.... + ++ .++||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTL---EASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 48999999999999999987 4344433 334444444432 233 378888776442 1 11 267999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|++... .. ....++.++.++|||||.+++...
T Consensus 137 v~~d~~----~~-~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDAD----KQ-NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSC----GG-GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCC----cH-HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998653 22 567899999999999999998754
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=105.83 Aligned_cols=116 Identities=16% Similarity=0.027 Sum_probs=81.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
....+..++...++ .+|||+|||+|.++..++.. .++++|+++..+..+..+ +...++ .+.+...|...++
T Consensus 191 la~~l~~~~~~~~~--~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~~~~ 267 (354)
T 3tma_A 191 LAQALLRLADARPG--MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHTTCCTT--CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGGGGG
T ss_pred HHHHHHHHhCCCCC--CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChhhCc
Confidence 44455555554444 48999999999999988874 466676665444433332 223344 5889999999988
Q ss_pred CCCCCeeEEEeccccccCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.+.||+|+++..+.....+ ....++.++.++|||||.+++..+
T Consensus 268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 877889999997654221110 126789999999999999999875
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=99.66 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=73.7
Q ss_pred ceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh----cccc---hhhccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR----gl~~---~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||+|.++.+|++.. - ..|+.+|.++.++..+.++ |+-. +--.+...+..+| .+||+|-++.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~--~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC--CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 3789999999999999998762 1 2455666666677666543 4321 1002233444555 7999999988
Q ss_pred ccccC--CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHh
Q 006633 549 IFSLY--KDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITD 593 (637)
Q Consensus 549 lfs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~ 593 (637)
.|... ..+-....+|-++-|+|||||.++|..+. .....++++..
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 87532 22333457899999999999999996432 34455555554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=101.31 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=69.1
Q ss_pred CCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc-------C-CCeEEEEecccc-CC--CCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER-------G-VPALIGVMASIR-LP--YPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er-------g-~~~~~~~~d~~~-Lp--fpd~sF 283 (637)
+.+|||||||+|.++..|++.+ ++++|+++..+..+..+....+ + .++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 3489999999999999998862 5566655443333222222110 3 368888888775 66 778999
Q ss_pred eEEEeccccccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|.|+....- +|... -...++.++.++|||||.|++...
T Consensus 130 d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 130 SKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 999864321 22210 014799999999999999999753
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=106.39 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=69.8
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C----CEEEEcCccccHHHHHHHHHHc----------------C
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALER----------------G 263 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~----v~~vdisp~Dls~a~i~~A~er----------------g 263 (637)
...+.+.+...++. +|||+|||+|.++..|++. + ++++|++ +.+++.|+++ .
T Consensus 94 ~~~~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~-----~~~~~~a~~~~~~~~~~~~ln~~~~~~ 166 (336)
T 2b25_A 94 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR-----KDHHDLAKKNYKHWRDSWKLSHVEEWP 166 (336)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESS-----HHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEEEeCC-----HHHHHHHHHHHHHhhcccccccccccC
Confidence 34455565555544 9999999999999999876 3 4555554 4444444332 1
Q ss_pred CCeEEEEeccccC--CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 264 VPALIGVMASIRL--PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 264 ~~~~~~~~d~~~L--pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++.+...|...+ ++++++||+|++... ++..++.++.++|||||.|++..+
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CceEEEECChHHcccccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3578888888776 567788999998532 233488999999999999999865
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-08 Score=103.59 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=72.9
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLP 277 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lp 277 (637)
+..++...++. +|||+|||+|..+..|++. + ++++|+ ++.+++.+++ .+. ++.+...|...++
T Consensus 110 ~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~-----s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~ 182 (315)
T 1ixk_A 110 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDV-----DENRLRETRLNLSRLGVLNVILFHSSSLHIG 182 (315)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECS-----CHHHHHHHHHHHHHHTCCSEEEESSCGGGGG
T ss_pred HHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcC-----CHHHHHHHHHHHHHhCCCeEEEEECChhhcc
Confidence 44555555544 9999999999999999874 2 455555 4444444433 244 6788888887776
Q ss_pred CCCCCeeEEEecc------ccccCC-------cC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSR------CLIPWG-------QY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~------~L~h~~-------~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+++||+|++.. ++.+.+ .+ ....+|.++.++|||||.+++++.
T Consensus 183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 5567899999832 221111 10 115889999999999999999864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.8e-09 Score=99.57 Aligned_cols=118 Identities=15% Similarity=0.225 Sum_probs=83.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +-.++ |.. .+.. +.+||+|.+.++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCCEEEEEEESCG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCCceEEEEcchh
Confidence 45999999999999999988754 667777776777777654 33 22222 222 2222 7899999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------HHHHHHHHHHhcCCceeEEec
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--------------DILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~~~~~~~~~~~~~~W~~~~~~ 603 (637)
.... .-+...+|-++.|+|+|||.+++.+.. -....++++++. |++....
T Consensus 108 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 108 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 7543 235689999999999999998875311 033566777776 8776543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.2e-09 Score=101.01 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=93.3
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cchhhccccccCC--CCCccceeeecccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMST--YPRTYDLIHADSIFSL 552 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~~wce~~~~--yp~t~Dl~H~~~lfs~ 552 (637)
...+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++-- +..+. ..+.. ++.+||+|.+.++|..
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITE---GDFLSFEVPTSIDTIVSTYAFHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEES---CCSSSCCCCSCCSEEEEESCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEe---CChhhcCCCCCeEEEEECcchhc
Confidence 467899999999999999988854 67777887788888888732 22222 22222 3389999999888875
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCH----H---------------------------HHHHHHHHHhcCCceeEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDDV----D---------------------------ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~---------------------------~~~~~~~~~~~~~W~~~~ 601 (637)
..+. ....+|.|+-|+|||||.+++.+.. . ....++++++.-.+++..
T Consensus 119 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 119 LTDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred CChH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 5432 1234999999999999999998521 1 125677788888887765
Q ss_pred eccCCCCCCcceEEEEEec
Q 006633 602 ADHENGPRQREKILFANKK 620 (637)
Q Consensus 602 ~~~e~~~~~~~~~l~~~K~ 620 (637)
.... .-.-++.++|+
T Consensus 198 ~~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 198 TRLN----HFVWVMEATKQ 212 (220)
T ss_dssp EECS----SSEEEEEEEEC
T ss_pred eecc----ceEEEEeehhh
Confidence 5433 23456666664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=98.35 Aligned_cols=136 Identities=11% Similarity=0.066 Sum_probs=99.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCCCccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~~ 555 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- +..+. |. +.++.-+.+||+|.+.++|....
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~- 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMG- 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCC-
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCC-
Confidence 45899999999999999988854 56667777789999988732 22222 22 22322238999999988777543
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
.-+...+|-++-|+|||||.+++.+.. -....++++++...|++.......+ .+...|...|
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~ 194 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA 194 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence 336789999999999999999998521 1357888899999999887665544 4556665555
Q ss_pred c
Q 006633 620 K 620 (637)
Q Consensus 620 ~ 620 (637)
+
T Consensus 195 ~ 195 (203)
T 3h2b_A 195 S 195 (203)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=104.07 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCCCccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
....+|||+|||.|+++.+|++ .+. +|+.+|.++.++..+.++ |+..-+.-.+..+..+|.+||+|.+.++|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l 139 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAF 139 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCG
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCch
Confidence 3467899999999999999984 454 667777777888888776 44222221223344567999999998888
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..... -+...+|-|+-|+|||||.+++.+
T Consensus 140 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 140 EHFGH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp GGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76532 356899999999999999999975
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=100.05 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=72.4
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC-CCC-----CCCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-PYP-----SRAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L-pfp-----d~sFDlV 286 (637)
.+|||||||+|..+..|++. .++++|+++..+..+...+. ..+. .+.+..+|+... +.. +++||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR-EAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH-HTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 48999999999999999874 47788888866655444333 3343 578888887543 221 4789999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++... .. +...+++++.++|||||.+++...
T Consensus 141 ~~d~~----~~-~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDAD----KT-NYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESC----GG-GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCC----hH-HhHHHHHHHHHhcCCCeEEEEECC
Confidence 98643 22 677899999999999999999753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=101.28 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=99.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCCCccceeeecc-ccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYPRTYDLIHADS-IFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp~t~Dl~H~~~-lfs~~~ 554 (637)
..+|||+|||.|.++..|++... +|+.+|.++.++..+.++.- +..+. |.. .+. ++.+||+|.+.+ +|....
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-DFS-LGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TCC-CSCCEEEEEECTTGGGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-HCC-ccCCcCEEEEcCchhhhcC
Confidence 47899999999999999998854 67777888789999888732 12222 221 222 268999999987 777665
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC----------------------------------------------H------
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDD----------------------------------------------V------ 582 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------------------------------------~------ 582 (637)
+.-++..+|-++.|+|||||.++|.+- .
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 545667899999999999999999520 0
Q ss_pred ---------HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 583 ---------DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 583 ---------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
-....++++++.-.+++..+... .....+++++|+
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~---~~~~~~~va~K~ 249 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGG---PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC---CCCceeEEEecC
Confidence 02578889988888887765333 235678999997
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=98.28 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=66.2
Q ss_pred CEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccC-CCCCCCeeEEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-PYPSRAFDMAH 287 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~L-pfpd~sFDlV~ 287 (637)
.+|||||||+|..+..|++. + ++++|+ ++.+++.|+++ +. .+.+..++.... +..++ ||+|+
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~-----~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDP-----DRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEES-----CHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEEC-----CHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEE
Confidence 48999999999999999876 3 445555 44444444432 32 377887776543 55456 99999
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+... . . +...+++++.++|||||.+++..
T Consensus 132 ~~~~---~-~-~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 132 MDCD---V-F-NGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EETT---T-S-CHHHHHHHHGGGEEEEEEEEEES
T ss_pred EcCC---h-h-hhHHHHHHHHHhcCCCeEEEEEC
Confidence 8632 2 2 67889999999999999999864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-09 Score=106.59 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC---CCC---CCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL---PYP---SRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L---pfp---d~sFDlV 286 (637)
+.+|||+|||+|.++..|+++ .++++|+++.++..+..+. ...+. .+.+..+|.... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 459999999999999888875 3555655544333332222 22343 278888876542 454 3689999
Q ss_pred EeccccccCCc-------------CCHHHHHHHHHhcccCCeEEEEE
Q 006633 287 HCSRCLIPWGQ-------------YADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 287 ~~s~~L~h~~~-------------~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+++..+++... +....++.++.|+|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99876644320 01224567888999999887664
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-08 Score=97.28 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=93.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----c-------cchhh-ccccccCCCCCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L-------IGTYQ-NWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l-------~~~~~-~wce~~~~yp~t~Dl~H 545 (637)
..+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++- + +..+. |. +....-+.+||+|.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAAT 107 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEEE
Confidence 56899999999999999987631 135667777778888887762 1 22222 22 11111237999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH----------------------HHHHH----HHHhcCCcee
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI----------------------LVKIK----SITDGMEWEG 599 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~----------------------~~~~~----~~~~~~~W~~ 599 (637)
+..++.... .-++..+|-++-|+|||||.+++....+. ...++ ++++.-.+++
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 988887653 22346899999999999998887643321 12333 7777777888
Q ss_pred EEeccC---CCCCCcceEEEEEec
Q 006633 600 RIADHE---NGPRQREKILFANKK 620 (637)
Q Consensus 600 ~~~~~e---~~~~~~~~~l~~~K~ 620 (637)
.....- ..--.+.+|.|++|.
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEecCCccccCCCCeEEEEEecc
Confidence 765322 122247899999995
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=98.38 Aligned_cols=94 Identities=9% Similarity=0.074 Sum_probs=64.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH---cCCCeEEEEeccccCC---CCCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRLP---YPSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e---rg~~~~~~~~d~~~Lp---fpd~sFDlV~ 287 (637)
+.+|||+|||+|.++..|+++ .++++|+ ++.+++.+.+ ...++.+...|..... ...++||+|+
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~-----s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF-----SPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEES-----CHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEEC-----CHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEE
Confidence 449999999999999999875 2445554 4444433322 1246788888876521 1245899999
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+... ... ....++.++.++|||||.+++..
T Consensus 149 ~~~~---~~~-~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 149 EDVA---QPT-QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ECCC---STT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC---CHh-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 8653 221 23455999999999999999983
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=94.09 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=70.4
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecccc-C
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-L 276 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~-L 276 (637)
.+..++...++ .+|||||||+|.++..|++. +..++.+ |+++.+++.|+++ +. .+.+..++... +
T Consensus 51 ~l~~l~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 125 (239)
T 2hnk_A 51 FLNILTKISGA--KRIIEIGTFTGYSSLCFASALPEDGKILCC---DVSEEWTNVARKYWKENGLENKIFLKLGSALETL 125 (239)
T ss_dssp HHHHHHHHHTC--SEEEEECCTTCHHHHHHHHHSCTTCEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHhhCc--CEEEEEeCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHH
Confidence 34444444443 38999999999999999876 3333333 3344444444432 33 26777776543 1
Q ss_pred C--------------CCC--CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 P--------------YPS--RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 p--------------fpd--~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+ |++ ++||+|++.... . +...++.++.++|||||.+++..
T Consensus 126 ~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~----~-~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDADK----E-NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG----G-GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhhcccccccccccCCCCCcCEEEEeCCH----H-HHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 333 789999987532 2 56689999999999999999975
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=105.07 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCCCccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
....+|||+|||.|+++.+|++. + .+|+.+|.++.++..+.++ |+-+-++-.+..+..++.+||+|.+.++|
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~ 147 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAF 147 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCG
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchH
Confidence 44678999999999999999887 6 3577778777888888776 44221221222223348999999999888
Q ss_pred ccCCCC------cCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDR------CEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~------c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
....+. -+.+.+|-++.|+|||||.++|.+
T Consensus 148 ~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 148 EHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp GGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred HhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 766432 456899999999999999999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-08 Score=107.58 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=73.8
Q ss_pred CEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
.+|||||||+|.++..++++ ++.++.+ |+ ..+++.+++ ...+.+...|... +++ .||+|++..+++||.+
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVF---DQ-PQVVGNLTG-NENLNFVGGDMFK-SIP--SADAVLLKWVLHDWND 266 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEE---EC-HHHHSSCCC-CSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEe---cc-HHHHhhccc-CCCcEEEeCccCC-CCC--CceEEEEcccccCCCH
Confidence 49999999999999999987 5556655 55 355555543 2347888888766 666 4999999999988984
Q ss_pred CCHHHHHHHHHhcccC---CeEEEEEeC
Q 006633 298 YADGLYLIEVDRVLRP---GGYWILSGP 322 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKP---GG~Lvls~p 322 (637)
++...+|+++.++||| ||++++..+
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 2233999999999999 999999764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-08 Score=98.65 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=70.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..++++ .++++|+++..+..+..+ +..++. ++.+..+|...++. .++||+|++....
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n-~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCEN-IKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHH-HHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 349999999999999999986 355666655433333222 223343 57788888877744 6789999987643
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...++.++.++|||||.++++..
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 456689999999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-09 Score=120.79 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcC-CCeEEEEeccccC--CCCCCCeeEEEecc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERG-VPALIGVMASIRL--PYPSRAFDMAHCSR 290 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg-~~~~~~~~d~~~L--pfpd~sFDlV~~s~ 290 (637)
.+.+|||||||.|.++..|+++|..++++ |.++.+++.|+ +.+ .++.+.+.+++.+ ++++++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~gi---D~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGI---DFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEE---CCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 34589999999999999999998766666 55666665554 344 5788999988887 56788999999999
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++|+.+.+....+..+.+.|+++|..++..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 9999983211233556777788887666653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=98.11 Aligned_cols=99 Identities=18% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhhccccccCCC--CCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY--PRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~~wce~~~~y--p~t~Dl~H~~~l 549 (637)
....+|||+|||.|.++.+|++.. .+|+.+|.++.++..+.++.- +..++ ..+..+ +.+||+|.+.++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAA---TDILQFSTAELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEE---CCTTTCCCSCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEE---cchhhCCCCCCccEEEEccH
Confidence 567899999999999999999884 478888888889988888742 22222 222223 489999999988
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|....+.-.+..+|-++-|+|||||.+++.+
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8766655555688999999999999999975
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=96.04 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=89.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCC-CCccceeeec-cc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTY-PRTYDLIHAD-SI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~y-p~t~Dl~H~~-~l 549 (637)
..+|||+|||+|.++.+|++.. -.|+.+|.++.++..+.++ |+ +-..++-.+.+..+ +.+||+|.++ +.
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 5689999999999999999883 4667778887888887665 44 33444333444445 4889999765 32
Q ss_pred cccC-----CCCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCC---ceeEEeccCCCCCCcceEE
Q 006633 550 FSLY-----KDRCEMEDVLLEMDRILRPEGSVIIRDD------VDILVKIKSITDGME---WEGRIADHENGPRQREKIL 615 (637)
Q Consensus 550 fs~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~~~---W~~~~~~~e~~~~~~~~~l 615 (637)
+... ...-.....|-|+-|+|||||.+++..- .+....+.+.++.+. |.+.....-+....+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 2210 0112234778999999999999999642 234455666666555 7766554444333445566
Q ss_pred EEEe
Q 006633 616 FANK 619 (637)
Q Consensus 616 ~~~K 619 (637)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6555
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.8e-08 Score=93.20 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=97.9
Q ss_pred hcchhhHHHHHHHHHHHHH------------hhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhH
Q 006633 449 EMFREDTALWKKRVTYYKS------------VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 516 (637)
Q Consensus 449 ~~f~~d~~~w~~~v~~y~~------------~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~ 516 (637)
+.|.++...|......|.. ++..+.......+|||+|||.|.++..|. ..|..+-+.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------- 97 (215)
T 2zfu_A 27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL-------- 97 (215)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS--------
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC--------
Confidence 4566777777765555543 22222211345789999999999999885 44544444332
Q ss_pred HHHhhcccchhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHH
Q 006633 517 VIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSIT 592 (637)
Q Consensus 517 ~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~ 592 (637)
. +.+...-.+.+ ++| .+||+|.+..++. . -+...+|.|+.|+|+|||.+++.+... ....+.+++
T Consensus 98 -----~-~~~~~~d~~~~-~~~~~~fD~v~~~~~l~-~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l 166 (215)
T 2zfu_A 98 -----D-PRVTVCDMAQV-PLEDESVDVAVFCLSLM-G---TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV 166 (215)
T ss_dssp -----S-TTEEESCTTSC-SCCTTCEEEEEEESCCC-S---SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred -----C-ceEEEeccccC-CCCCCCEeEEEEehhcc-c---cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 1 11111111222 344 7999999987773 1 467899999999999999999987554 457788888
Q ss_pred hcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 593 DGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 593 ~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
+...++....+...+ .-.+++++|.
T Consensus 167 ~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 167 TKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp HHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred HHCCCEEEEEecCCC---eEEEEEEEec
Confidence 888888776544322 3478888886
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-08 Score=93.18 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=94.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
....+|||+|||.|.++.+|.+.. . +|..+|.++.++..+.++ . .-+.-.+.. .++| .+||+|.+..++....
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~-~-~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEK-F-DSVITLSDP-KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHH-C-TTSEEESSG-GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHh-C-CCcEEEeCC-CCCCCCceEEEEEccchhccc
Confidence 346899999999999999999885 2 788888888899999888 2 212111222 4555 7999999988887654
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHH-------------HHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEecC
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDVD-------------ILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKY 621 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-------------~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~~ 621 (637)
+...+|-|+-|+|||||.+++.+... ....++++++ .|+......- + .....+++.|+-
T Consensus 90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-~--~~~~~l~~~~~~ 161 (170)
T 3i9f_A 90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-T--PYHFGLVLKRKT 161 (170)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-S--TTEEEEEEEECC
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-C--CceEEEEEecCC
Confidence 56899999999999999999985211 2356666666 6655433221 1 246778887753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.2e-09 Score=102.55 Aligned_cols=97 Identities=11% Similarity=0.191 Sum_probs=75.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCCCC-CccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~~~~ 555 (637)
..+|||+|||.|.++.+|.+.+. +|+.+|.++.++..+.++ +..+. |..+-..++| .+||+|.+.++|....
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~- 115 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD- 115 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC-
Confidence 57899999999999999988754 456778777899998888 33332 2222233566 8999999988887654
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-++..+|-++.|+|||||++++..
T Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 116 PERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp GGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2356899999999999999999974
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-08 Score=95.70 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=73.4
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----c-cchhh-ccccccCCCCCccceeeecc-c
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L-IGTYQ-NWCEAMSTYPRTYDLIHADS-I 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l-~~~~~-~wce~~~~yp~t~Dl~H~~~-l 549 (637)
...+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++- + +..++ |.. .+ +++.+||+|.+.+ +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~-~~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NL-NINRKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GC-CCSCCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cC-CccCCceEEEEcCcc
Confidence 356899999999999999988854 5777788778888887762 2 22222 221 11 2458999999987 8
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|....+.-+...+|-++-|+|+|||.+++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 876644446789999999999999999984
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-08 Score=103.97 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCC--chHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcC-----CCeEEEEe
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGV--ASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-----VPALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGt--G~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg-----~~~~~~~~ 271 (637)
+.+..+..+++.... ..++|||||||+ +.++..++++ +..++.+ |.++.++..|+++. ..+.+..+
T Consensus 63 r~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~V---D~sp~mLa~Ar~~l~~~~~~~~~~v~a 138 (277)
T 3giw_A 63 RDWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYV---DNDPIVLTLSQGLLASTPEGRTAYVEA 138 (277)
T ss_dssp HHHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEE---ECCHHHHHTTHHHHCCCSSSEEEEEEC
T ss_pred HHHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEE---eCChHHHHHHHHHhccCCCCcEEEEEe
Confidence 344455555554222 246899999997 3344554442 3344444 44555665555432 13788888
Q ss_pred ccccCC----CC--CCCee-----EEEeccccccCCcCC-HHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLP----YP--SRAFD-----MAHCSRCLIPWGQYA-DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lp----fp--d~sFD-----lV~~s~~L~h~~~~d-~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|...++ .+ .+.|| .|+++.+|||+.+++ +..++.++.+.|+|||+|+++..
T Consensus 139 D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 139 DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 877642 11 34565 588888886666422 57899999999999999999864
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=102.14 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L 276 (637)
.....+..+. ..+ +.+|||+|||+|.++..++..+ ++++|+++.++..+..+ +...++ .+.+...|...+
T Consensus 205 ~la~~l~~~~-~~~--~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-ELD--GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-TCC--SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-cCC--CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhC
Confidence 3444455555 333 3489999999999999998873 56666655444433322 223354 678999999999
Q ss_pred CCCCCCeeEEEeccccccCCcC--C----HHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHH
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQY--A----DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 350 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~--d----~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~l 350 (637)
++++++||+|+++..+...... . ...++.++.|+| ||.+++..+ . .+.+++.
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------~-------~~~~~~~ 338 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------E-------KKAIEEA 338 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------C-------HHHHHHH
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------C-------HHHHHHH
Confidence 9888999999998654322110 1 256888999999 455555433 1 1234556
Q ss_pred HHHhceeeec
Q 006633 351 ARSLCWKKLI 360 (637)
Q Consensus 351 a~~l~w~~v~ 360 (637)
..+.+|+...
T Consensus 339 ~~~~G~~~~~ 348 (373)
T 3tm4_A 339 IAENGFEIIH 348 (373)
T ss_dssp HHHTTEEEEE
T ss_pred HHHcCCEEEE
Confidence 7777887654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=104.20 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=95.9
Q ss_pred ceeEeeecccchhhhhhhc--CCCeEEEEeccCCCCcchhHHHHhhc----c---cchhh-ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALV--DDPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~eRg----l---~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
..+|||+|||.|.++.+|+ ..+- .+|+.+|.++.++..+.++. + +-+++ |..+ .+++.+||+|.++
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK--LDTREGYDLLTSN 194 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG--CCCCSCEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc--CCccCCeEEEEEC
Confidence 5689999999999999995 3322 35667777778888877653 2 22222 2222 1245999999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------------------------------HHHHHH
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV---------------------------------------DILVKI 588 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------------------------------~~~~~~ 588 (637)
+++....+.-....+|-|+-|+|||||.+++.+-. .....+
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 88876655544456899999999999999998611 135677
Q ss_pred HHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 589 KSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 589 ~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
.++++.-.++....... ....-.+++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 88888888887655432 2234568888885
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.2e-08 Score=93.15 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=63.2
Q ss_pred CCEEEEECCCCchHHHHHhhc-C------------CEEEEcCccccHHHHHHHHHHcCCCeEEE-EeccccCC-------
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-N------------ILAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP------- 277 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~------------v~~vdisp~Dls~a~i~~A~erg~~~~~~-~~d~~~Lp------- 277 (637)
+.+|||+|||+|.++..|+++ + ++++|+++.. ....+.+. ..|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHHH
Confidence 349999999999999999876 2 4555554421 11235666 66654432
Q ss_pred -CCCCCeeEEEeccccc---cCCcCCH-------HHHHHHHHhcccCCeEEEEEeC
Q 006633 278 -YPSRAFDMAHCSRCLI---PWGQYAD-------GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 -fpd~sFDlV~~s~~L~---h~~~~d~-------~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|+|..+++ ++.. +. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDL-DHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcCCCCCcEEEeCCCCCCCCCccc-CHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3456899999976542 1211 22 4789999999999999999864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=97.69 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCCC--eEEEEec
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGVP--ALIGVMA 272 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~~~d 272 (637)
..+.+++.+.+.++...+ .+|||+|||+|.++..|++. +..++.+ |+++.+++.|++ .+.. +.+...|
T Consensus 107 ~te~lv~~~l~~~~~~~~--~~vLDlG~GsG~~~~~la~~~~~~v~~v---Dis~~al~~A~~n~~~~~l~~~v~~~~~D 181 (284)
T 1nv8_A 107 ETEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAKFSDAIVFAT---DVSSKAVEIARKNAERHGVSDRFFVRKGE 181 (284)
T ss_dssp THHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHHHSSCEEEEE---ESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred hHHHHHHHHHHHhcccCC--CEEEEEeCchhHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence 345566666666654333 38999999999999999887 4444433 444455554443 3442 7888888
Q ss_pred cccCCCCCCCe---eEEEecccccc-----------CCc------CCHHHHHHHHH-hcccCCeEEEEEeC
Q 006633 273 SIRLPYPSRAF---DMAHCSRCLIP-----------WGQ------YADGLYLIEVD-RVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lpfpd~sF---DlV~~s~~L~h-----------~~~------~d~~~~L~ei~-RvLKPGG~Lvls~p 322 (637)
... +++ ++| |+|+++.-++. .+. .+...+++++. +.|+|||.|++..+
T Consensus 182 ~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 182 FLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp TTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred chh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 655 222 478 99999743221 110 02236899999 99999999999754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.70 E-value=8.7e-09 Score=102.52 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=89.9
Q ss_pred hhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhh-ccccccCCCC-Ccc
Q 006633 468 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQ-NWCEAMSTYP-RTY 541 (637)
Q Consensus 468 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~-~wce~~~~yp-~t~ 541 (637)
++..+.. ....+|||+|||.|.++.+|++.. ..+|..+|.++.++..+.++- -+-.++ |+. .+ ++| .+|
T Consensus 85 ~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-~~~~~~f 159 (254)
T 1xtp_A 85 FIASLPG-HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TA-TLPPNTY 159 (254)
T ss_dssp HHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GC-CCCSSCE
T ss_pred HHHhhcc-cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HC-CCCCCCe
Confidence 3333433 457799999999999999998764 234666677778888888773 233332 322 23 344 899
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCceeEEe
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~ 602 (637)
|+|.+..++..... -+...+|.++.|+|||||+++|.+.. .....++++++...++....
T Consensus 160 D~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 160 DLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp EEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 99999888775532 24679999999999999999998731 02366777777777776544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=100.22 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=69.4
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC--CCCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L--pfpd~sF 283 (637)
.++|||||||+|.++..|+++ .++++|+ ++.+++.|+++ ...+.+..+|.... .+++++|
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDi-----s~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~f 195 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEI-----DKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 195 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEES-----CHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEEC-----CHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCc
Confidence 469999999999999999987 2455555 44555555432 23578888886553 2456789
Q ss_pred eEEEeccccccCCcCC---HHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQYA---DGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d---~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++.... ++...+ ...+++++.++|||||.|++..
T Consensus 196 DlIi~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 196 DAVIVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEEEECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999996532 332111 4689999999999999999974
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-08 Score=100.96 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=72.6
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cchhhccccccCCCCCccceeeeccccccCCCC
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDR 556 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~ 556 (637)
.+|||+|||.|.++..|++... +|+.+|.++.++..+.++-- +..++.-.+.+ ..+.+||+|++.+++....
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-- 117 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID-- 117 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS--
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc--
Confidence 4699999999999999988753 56777887788888888732 22222111222 2348999999988887654
Q ss_pred cCHHHHHHHHh-hcccCCcEEEEEe
Q 006633 557 CEMEDVLLEMD-RILRPEGSVIIRD 580 (637)
Q Consensus 557 c~~~~~l~e~d-RiLrPgG~~i~~d 580 (637)
+.+.+|-|+- |+|||||++++.+
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 4589999999 9999999999986
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.8e-09 Score=105.88 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC-------CCeEEE--EeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG-------VPALIG--VMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg-------~~~~~~--~~d~~~Lpfpd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..++++ .|+++|+++ +.. .+.++. .++.+. .+|+..+| +++||+|+|
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~-----~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGT-----SGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCC-----TTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhh-----hhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 459999999999999999987 678888876 321 111111 146777 77877765 689999999
Q ss_pred ccccccCCcC--CHH---HHHHHHHhcccCCe--EEEEEeC
Q 006633 289 SRCLIPWGQY--ADG---LYLIEVDRVLRPGG--YWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~--d~~---~~L~ei~RvLKPGG--~Lvls~p 322 (637)
..+ .+.... +.. .+|.++.|+||||| .|++...
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 866 222110 111 37899999999999 9998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=94.85 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=66.3
Q ss_pred CEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccc----cCCCCC--CC
Q 006633 220 RTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI----RLPYPS--RA 282 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~----~Lpfpd--~s 282 (637)
.+|||||||+|..+..|++. + ++++|+ ++.+++.|+++ +. .+.+...+.. .++..+ ++
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~-----~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQ-----DPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEES-----CHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 38999999999999999875 3 445555 44444444432 33 3677777753 233334 78
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|++... .. +...+++++.++|||||.+++...
T Consensus 149 fD~V~~d~~----~~-~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 149 FDLIFIDAD----KR-NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEEEECSC----GG-GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred cCEEEECCC----HH-HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999998643 22 677899999999999999999753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-08 Score=103.46 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=75.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC---CeEEEEeccccCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRLP 277 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~---~~~~~~~d~~~Lp 277 (637)
.+.+.+.+.. .+.+.+|||+|||+|.++..+++.+..++.+ |+++.+++.|+++ +. .+.+...|...+.
T Consensus 141 ~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga~V~~V---D~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l 216 (332)
T 2igt_A 141 WEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHV---DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 216 (332)
T ss_dssp HHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred HHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH
Confidence 3445555531 1223489999999999999999886555554 5555555555432 33 2788888865543
Q ss_pred C----CCCCeeEEEeccccc---------cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 Y----PSRAFDMAHCSRCLI---------PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 f----pd~sFDlV~~s~~L~---------h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. .+++||+|++..-.. ++.. +...++.++.++|||||.|++...
T Consensus 217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~-~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFD-HLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHH-HHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HHHHhcCCCceEEEECCccccCCchHHHHHHHH-HHHHHHHHHHHhcCcCcEEEEEEC
Confidence 1 156899999954311 1222 467899999999999999888753
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=104.23 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=67.0
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc-------CCCeEEE--EeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER-------GVPALIG--VMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er-------g~~~~~~--~~d~~~Lpfpd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..++++ .|+++|+++ +.. .+.+. +.++.+. .+|+..++ +++||+|+|
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~-----~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGV-----GGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC 146 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCC-----SSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhh-----hhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence 449999999999999999886 678888876 321 11111 1146777 77877765 689999999
Q ss_pred ccccccCCcC--CHH---HHHHHHHhcccCCe--EEEEEeC
Q 006633 289 SRCLIPWGQY--ADG---LYLIEVDRVLRPGG--YWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~--d~~---~~L~ei~RvLKPGG--~Lvls~p 322 (637)
..+ ++.... +.. .+|.++.++||||| .|++...
T Consensus 147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 766 222210 111 37899999999999 9999754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=95.36 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=72.3
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
+|||+|||.|.++.+|++.+ -.+|+.+|.++.++..+.++ |+ +..++ |. +.++ +| .+||+|.+.+++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV-HNIP-IEDNYADLIVSRGSV 121 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT-TBCS-SCTTCEEEEEEESCG
T ss_pred EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH-HHCC-CCcccccEEEECchH
Confidence 99999999999999998873 24677778777888888777 44 22222 22 2222 44 899999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
... -+...+|-|+-|+|||||.+++.+
T Consensus 122 ~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 122 FFW---EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhc---cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 765 356899999999999999999975
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=94.04 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhc--CCCeEEEEeccCCCCcchhHHHHhh----cc--c
Q 006633 453 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV--DDPLWVMNTVPVEAKINTLGVIYER----GL--I 524 (637)
Q Consensus 453 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~ 524 (637)
.....|.+++-....++..+.. ....+|||+|||.|.++..|+ ..+. .|+.+|.++.++.++.++ |+ +
T Consensus 47 ~~~~~~~~~~~d~l~~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v 122 (240)
T 1xdz_A 47 EKKEVYLKHFYDSITAAFYVDF-NQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENT 122 (240)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCG-GGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CHHHHHHHHHHHHHhHHHhccc-CCCCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCE
Confidence 3445666655443333322221 235689999999999988887 3332 466667776777777653 54 3
Q ss_pred chhhccccccCC---CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCce
Q 006633 525 GTYQNWCEAMST---YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD---VDILVKIKSITDGMEWE 598 (637)
Q Consensus 525 ~~~~~wce~~~~---yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~~~W~ 598 (637)
-+++.=.+.+.. .+.+||+|.+..+ .+++.++-++-|+|||||.+++.+. .+.+..+.+.++...+.
T Consensus 123 ~~~~~d~~~~~~~~~~~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 123 TFCHDRAETFGQRKDVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGE 195 (240)
T ss_dssp EEEESCHHHHTTCTTTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEE
T ss_pred EEEeccHHHhcccccccCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCe
Confidence 344321223332 2578999998653 4578999999999999999999753 44566677777788887
Q ss_pred eEEecc--CCCCCCcceEEEEEecCCCC
Q 006633 599 GRIADH--ENGPRQREKILFANKKYWTA 624 (637)
Q Consensus 599 ~~~~~~--e~~~~~~~~~l~~~K~~w~~ 624 (637)
...... -......-.+++.+|.=.++
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~k~~~~~ 223 (240)
T 1xdz_A 196 LENIHSFKLPIEESDRNIMVIRKIKNTP 223 (240)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EeEEEEEecCCCCCceEEEEEEecCCCC
Confidence 653221 11112345677778765444
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-08 Score=109.53 Aligned_cols=144 Identities=11% Similarity=0.158 Sum_probs=105.6
Q ss_pred chhhHHHHHHHHHHHHH-hhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhc
Q 006633 451 FREDTALWKKRVTYYKS-VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQN 529 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~-~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~ 529 (637)
+......|.+....+.. ++..+.. ....+|||+|||.|.++.+|.+.+. +|+.+|.+.+++..+.++|+-.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~ 156 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELT-GPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDF 156 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTC-SSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceee
Confidence 44556678877776554 3343443 4567999999999999999998866 77788888899999999987332211
Q ss_pred c----ccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H----------H
Q 006633 530 W----CEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D----------I 584 (637)
Q Consensus 530 w----ce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~----------~ 584 (637)
+ .+.+ +++ .+||+|.+.++|.... +...+|-|+-|+|||||.+++.... + .
T Consensus 157 ~~~~~~~~l-~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (416)
T 4e2x_A 157 FEKATADDV-RRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS 232 (416)
T ss_dssp CSHHHHHHH-HHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred echhhHhhc-ccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence 1 1122 243 8999999999988765 6799999999999999999997431 0 2
Q ss_pred HHHHHHHHhcCCceeEEe
Q 006633 585 LVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 585 ~~~~~~~~~~~~W~~~~~ 602 (637)
...++++++.-.++....
T Consensus 233 ~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 256778888877776543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-08 Score=102.42 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCCCccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
....+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+-..+.-.+..+..+|.+||+|.+.++|
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l 165 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAF 165 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCG
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChH
Confidence 34668999999999999999876 54 667777777888888876 44221221223344557999999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..... -+...+|-|+-|+|||||.+++.+
T Consensus 166 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 166 EHFGH-ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp GGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HhcCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75432 356899999999999999999975
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-08 Score=104.00 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=71.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDR 556 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~ 556 (637)
-.+|||+|||+|.++..|+++.- +|+.+|.++.++..+.++.-+...+.=.|.++ +| .+||+|.|..+|. -
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h----~ 111 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAMH----W 111 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCCT----T
T ss_pred CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeehh----H
Confidence 35799999999999999998853 66777888788887766543443332224443 54 8999999977773 2
Q ss_pred cCHHHHHHHHhhcccCCcEEEEE
Q 006633 557 CEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 557 c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.+.+..|.|+.|||||||.+++-
T Consensus 112 ~~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 112 FDLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHcCCCCEEEEE
Confidence 46789999999999999999875
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=101.65 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L 276 (637)
+.|.+.|.+-.....+ ++|||||||+|.++...++.| |++++.++ +...+.+.+..++. .+.+...+...+
T Consensus 69 ~aY~~Ai~~~~~~~~~--k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~--~~~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 69 DAYRLGILRNWAALRG--KTVLDVGAGTGILSIFCAQAGARRVYAVEASA--IWQQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp HHHHHHHHTTHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECST--THHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhCHHhcCC--CEEEEeCCCccHHHHHHHHhCCCEEEEEeChH--HHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence 4444445432222233 489999999999998888874 67777764 33334445555654 478888888888
Q ss_pred CCCCCCeeEEEeccccccCCcC-CHHHHHHHHHhcccCCeEEEEE
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQY-ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.++ ..||+|+|...-..+..+ ....++....|+|||||.++-.
T Consensus 145 ~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 145 ELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 777 679999984332222211 6788899999999999998754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=97.68 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=74.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDR 556 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~ 556 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++|+..+-..-+.....+| .+||+|.+.+++....+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~- 122 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPD- 122 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCH-
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCH-
Confidence 45999999999999999988744 56677777789999998775221111111222244 89999999887776543
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 557 CEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 557 c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
-.+..+|-++-|+|||||.+++.+.
T Consensus 123 ~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2357899999999999999999853
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=93.16 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=67.2
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC-C-CCC----CCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-YPS----RAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L-p-fpd----~sFDlV 286 (637)
.+|||||||+|.++..|++. .++++|+++..+..+...+ ...+. .+.+...+.... + +++ ++||+|
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 49999999999999999875 3566666554433333222 22343 577877775432 1 211 689999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++... .. +...+++++.++|||||.+++...
T Consensus 150 ~~d~~----~~-~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 150 VVDAD----KE-NCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EECSC----ST-THHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCC----HH-HHHHHHHHHHHHcCCCeEEEEECC
Confidence 98643 22 677899999999999999999753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-08 Score=100.35 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp-~t~Dl~H~~ 547 (637)
....+|||+|||.|.++..|.+..- .|+.+|.++.++..+.++ |+ +.... |. +.+ ++| .+||+|.+.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l-~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQM-PFTDERFHIVTCR 110 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC-CSCTTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhC-CCCCCCEEEEEEh
Confidence 4467999999999999999988742 777888887898887765 43 22222 22 222 355 899999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.++.... +.+.+|-|+-|+|||||++++.+
T Consensus 111 ~~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 111 IAAHHFP---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp SCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 7776554 56899999999999999999974
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-08 Score=99.29 Aligned_cols=110 Identities=15% Similarity=0.026 Sum_probs=72.9
Q ss_pred HHHhcccCCCCCEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCC----
Q 006633 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY---- 278 (637)
Q Consensus 209 ~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpf---- 278 (637)
..++...++ .+|||+|||+|..+..|++. + ++++|+++..+..... .+...+. ++.+...|...++.
T Consensus 76 ~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~ 152 (274)
T 3ajd_A 76 PIVLNPRED--DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS-NINRMGVLNTIIINADMRKYKDYLLK 152 (274)
T ss_dssp HHHHCCCTT--CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred HHHhCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH-HHHHhCCCcEEEEeCChHhcchhhhh
Confidence 344444444 49999999999999999873 2 5556554433332221 1222344 67888888776654
Q ss_pred CCCCeeEEEecccccc-----------------CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIP-----------------WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h-----------------~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++||+|++..-... +.. ....++.++.++|||||.+++++.
T Consensus 153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSL-RQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp TTCCEEEEEEEECCC------------HHHHTGGGT-CHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHH-HHHHHHHHHHHhCCCCCEEEEEEC
Confidence 3678999998521111 112 567899999999999999999875
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.1e-08 Score=101.91 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=71.5
Q ss_pred CEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC-----CCeEEEEeccccC--CCCCCCeeEEEecc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRL--PYPSRAFDMAHCSR 290 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg-----~~~~~~~~d~~~L--pfpd~sFDlV~~s~ 290 (637)
.+|||||||+|.++.+|+++ ++.++.+ |+++.+++.|++.. ..+.+...|.... .+++++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~V---Eidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVV---ELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEE---ESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEE---ECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 48999999999999999983 4443333 55667777777653 3478888886654 35578999999864
Q ss_pred ccccCC-cC--CHHHHHHHHHhcccCCeEEEEEe
Q 006633 291 CLIPWG-QY--ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 291 ~L~h~~-~~--d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.. ++. .. ....+++++.++|||||.|++..
T Consensus 168 ~~-~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 168 FA-GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp ST-TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 33 322 10 23689999999999999999875
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.64 E-value=9.1e-07 Score=85.44 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..+++.+. .++.+ |+++.+++.++++ +.++.+...|...++ ++||+|+++..++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAKEVICV---EVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 45999999999999999998742 23333 4455555555543 336888888887764 4899999998876
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++.......++.++.++| ||.+++.
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEE
Confidence 555335567899999999 6655443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.63 E-value=7e-08 Score=93.74 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=65.2
Q ss_pred CCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC-----------CCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-----------SRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp-----------d~sFDl 285 (637)
+.+|||+|||+|.++..+++++ |+++|+++.. ....+.+..+|....+.. .++||+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 4599999999999999999874 5666765531 123577888887765421 148999
Q ss_pred EEeccccc---cCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLI---PWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~---h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|..... ++..+ ....++.++.++|||||.|++...
T Consensus 95 Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 95 VVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99965321 11100 134678999999999999998753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-08 Score=99.05 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~ 546 (637)
....+|||+|||.|.++..|++.+- .+|+.+|.++.++..+.++ |+ +-+.. |+ +.++ +| .+||+|.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~-~~~~~fD~i~~ 120 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLP-FRNEELDLIWS 120 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCC-CCTTCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCC-CCCCCEEEEEE
Confidence 3467999999999999999998743 3566677777888887766 43 22222 32 2332 43 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.++|... +.+.+|-++.|+|||||++++.+
T Consensus 121 ~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 121 EGAIYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp SSCGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 8888654 57899999999999999999985
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=100.97 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=75.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-----cchh-hccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----IGTY-QNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~-~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
....|||+|||.|.++.+|++... -+|+.+|.++.++..+.++.- +-++ .+|-+-...+| .+||.|..+.+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 357899999999999999998754 456677777789998887643 1122 24544455676 88999988777
Q ss_pred cccCC--CCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYK--DRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.+.+. +.-+.+.++-|+-|+|||||.|++-
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 66543 3345678999999999999999985
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-08 Score=95.05 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=86.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh-cccchhhccccccCCCCCccceeeeccccccCCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDR 556 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-gl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~ 556 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ ++--...|. +.+. .+.+||+|.+.+++.... .
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVP-R 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSC-H
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcC-H
Confidence 56899999999999999998854 567778777889888888 432111122 2233 448999999988776543 2
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeCH---------------HHHHHHHHHHhcCC-ceeEEe
Q 006633 557 CEMEDVLLEMDRILRPEGSVIIRDDV---------------DILVKIKSITDGME-WEGRIA 602 (637)
Q Consensus 557 c~~~~~l~e~dRiLrPgG~~i~~d~~---------------~~~~~~~~~~~~~~-W~~~~~ 602 (637)
-+...+|-|+-|+|||||++++.... -....+.++++.-. ++....
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 35678999999999999999997321 13567777777777 776543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.5e-08 Score=92.81 Aligned_cols=142 Identities=10% Similarity=0.018 Sum_probs=95.9
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccC-CCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMS-TYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~-~yp~t~Dl~H~~ 547 (637)
..+|||+|||.|.++.+|++. +- -+|+.+|.++.++..+.++ |+ +-+++.=.+.+. ..+.+||+|-++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 458999999999999998775 22 1566778777888887766 33 333331123344 335899999987
Q ss_pred ccc-ccC-----CCCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCC---ceeEEeccCCCCCCcc
Q 006633 548 SIF-SLY-----KDRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGME---WEGRIADHENGPRQRE 612 (637)
Q Consensus 548 ~lf-s~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~---W~~~~~~~e~~~~~~~ 612 (637)
..| ... ...-+...+|.++-|+|||||.+++.+ ..+....+.+.++.+. |.+..+..-+.+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp 180 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP 180 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence 544 110 111133479999999999999999975 1224556666666554 8888777666666778
Q ss_pred eEEEEEecC
Q 006633 613 KILFANKKY 621 (637)
Q Consensus 613 ~~l~~~K~~ 621 (637)
.++|.+|..
T Consensus 181 ~~~~~~~~~ 189 (197)
T 3eey_A 181 ILVCIEKIS 189 (197)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcc
Confidence 888888864
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-07 Score=97.73 Aligned_cols=96 Identities=15% Similarity=-0.017 Sum_probs=69.4
Q ss_pred CCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc----CC-CeEEEEecccc-CCC-CCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR-LPY-PSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~~~-Lpf-pd~sFDlV~~s 289 (637)
+.+|||+| |+|.++..++..+ ..++.+ |+++.+++.|+++ +. ++.+..+|... +|. .+++||+|+++
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~v---Di~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVL---DIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEE---CSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 45999999 9999999998763 344444 4455555555433 44 68888888877 664 45789999998
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeE-EEEEe
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGY-WILSG 321 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~-Lvls~ 321 (637)
..+.+ . ....++.++.++|||||. ++++.
T Consensus 249 ~p~~~-~--~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 249 PPETL-E--AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CCSSH-H--HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCCch-H--HHHHHHHHHHHHcccCCeEEEEEE
Confidence 76532 2 357899999999999994 45554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-08 Score=92.33 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=95.9
Q ss_pred cCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh--
Q 006633 444 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-- 521 (637)
Q Consensus 444 ~g~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-- 521 (637)
+|+..+.|..+...-++.+.. .++..+.. ....+|||+|||.|.++..|++..- ..+|+.+|.++.++..+.++
T Consensus 10 ~g~~d~~f~~~g~~~~~~i~~--~~l~~l~~-~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~ 85 (204)
T 3e05_A 10 GIDDDEFATAKKLITKQEVRA--VTLSKLRL-QDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLK 85 (204)
T ss_dssp CCCGGGSCCCTTTSCCHHHHH--HHHHHTTC-CTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCCcHHhccCCcCChHHHHH--HHHHHcCC-CCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 455566676644443333322 12222333 4467999999999999999987630 02456667776788887765
Q ss_pred --cc--cchhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcC
Q 006633 522 --GL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGM 595 (637)
Q Consensus 522 --gl--~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~ 595 (637)
|+ +-+++ |..+.+. ....||+|-+++.+. +++.+|-++-|+|||||.+++.. ..+....+.++++..
T Consensus 86 ~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~ 158 (204)
T 3e05_A 86 KFVARNVTLVEAFAPEGLD-DLPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH 158 (204)
T ss_dssp HHTCTTEEEEECCTTTTCT-TSCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred HhCCCcEEEEeCChhhhhh-cCCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence 44 22222 2222221 126799998866553 67899999999999999999985 446777888888888
Q ss_pred CceeEE
Q 006633 596 EWEGRI 601 (637)
Q Consensus 596 ~W~~~~ 601 (637)
.|+..+
T Consensus 159 g~~~~~ 164 (204)
T 3e05_A 159 GYMVEV 164 (204)
T ss_dssp TCEEEE
T ss_pred CCceeE
Confidence 886543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-08 Score=93.09 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=85.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc----cchhh-ccccccCCCCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL----IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl----~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
...+|||+|||.|.++.+|++.+ -+|..+|.++.++..+.++ |+ +-+++ |+.+.+. +.+||+|.++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 46789999999999999998873 3666777776788777766 43 22222 3333211 4789999997
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
..|.. ..-.+..+|-++-|+|+|||.+++.+.. +....+.+.++..-+++.+....+ .-.++.++|
T Consensus 127 ~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~k 193 (194)
T 1dus_A 127 PPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKG----GYRVLKSKK 193 (194)
T ss_dssp CCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEET----TEEEEEEEC
T ss_pred CCccc--chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCC----cEEEEEEee
Confidence 66542 1234578999999999999999998643 333435554444433444443331 345555554
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-08 Score=102.13 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=74.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccch------hh-ccccccC--CCC-Cccce
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGT------YQ-NWCEAMS--TYP-RTYDL 543 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~------~~-~wce~~~--~yp-~t~Dl 543 (637)
..+|||+|||+|.++..|++.+. +|+.+|.++.++..+.++. .-.. .. |+. .+. -++ .+||+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFDA 133 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeEE
Confidence 56899999999999999998865 7888898888999887753 1110 11 111 111 044 89999
Q ss_pred eeec-cccccCCC----CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 544 IHAD-SIFSLYKD----RCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 544 ~H~~-~lfs~~~~----~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
|+|. .+|....+ .-....+|-++-|+|||||++++...
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9997 57765544 44578999999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-08 Score=101.42 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=75.2
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc----cchhh-ccccccCCCC-Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
....+|||+|||.|.++.+|++. + .+|+.+|.++.++..+.++.- +-.++ |..+ + ++| .+||+|++.+
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYG---AHTHGIDICSNIVNMANERVSGNNKIIFEANDILT-K-EFPENNFDLIYSRD 128 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-C-CCCTTCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-C-CCCCCcEEEEeHHH
Confidence 45679999999999999999886 4 366777777789999888752 22222 3222 2 354 8999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+|.... .-+...+|-|+-|+|||||.+++.+
T Consensus 129 ~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 129 AILALS-LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 877552 1356799999999999999999985
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.8e-08 Score=100.28 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----------CCCeEEEEecccc-CCCCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIR-LPYPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----------g~~~~~~~~d~~~-Lpfpd~sF 283 (637)
..+|||||||+|.++..++++ .++++|+++ .+++.|+++ ...+.+...|... ++..+++|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-----ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-----HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH-----HHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCc
Confidence 459999999999999999987 255666654 444444332 2457888888765 34456889
Q ss_pred eEEEeccccccC---Cc-C--CHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPW---GQ-Y--ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~---~~-~--d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++.... |+ .+ . ....+++++.++|||||.|++..
T Consensus 153 D~Ii~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 153 DVVIIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999997654 54 11 0 13689999999999999999974
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-08 Score=98.55 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=71.2
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
...+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++ |+ +.+.+ |+. .+.. +.+||+|.+.
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~V~~~ 110 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVA-NEKCDVAACV 110 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCC-SSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCCc-CCCCCEEEEC
Confidence 3568999999999999999765 32 456677777888887665 44 22222 222 2222 6899999997
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+++-... +...+|-|+-|+|||||.+++.+
T Consensus 111 ~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 111 GATWIAG---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp SCGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CChHhcC---CHHHHHHHHHHHcCCCeEEEEec
Confidence 7775444 46899999999999999999985
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-08 Score=103.05 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEc----CccccHHHHHHHHHHcC-CCeEEEEe-ccccCCCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSF----APRDTHEAQVQFALERG-VPALIGVM-ASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdi----sp~Dls~a~i~~A~erg-~~~~~~~~-d~~~Lpfpd~sFDlV~~s~~ 291 (637)
+.+|||+|||+|.++..++++ .|+++|+ ++..+.. .. ....+ ..+.+... |...++ .++||+|+|..+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~--~~-~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~ 157 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP--IP-MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIG 157 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC--CC-CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHH--HH-hhhcCCCCeEEEeccccccCC--cCCCCEEEECCc
Confidence 459999999999999999987 4777877 3322210 00 00111 23666666 665554 568999999766
Q ss_pred cc--cCCcCCHH---HHHHHHHhcccCCeEEEEEeC
Q 006633 292 LI--PWGQYADG---LYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~--h~~~~d~~---~~L~ei~RvLKPGG~Lvls~p 322 (637)
++ ++.. +.. .+|.++.++|||||.|++..+
T Consensus 158 ~~~g~~~~-d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 158 ESSPNPTV-EAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCSSHHH-HHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cccCcchh-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 52 2221 222 478999999999999998754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.3e-08 Score=91.24 Aligned_cols=110 Identities=7% Similarity=0.084 Sum_probs=84.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.+|++.. .+|+.+|.++.++..+.++ |+ +-+++ |+.+ .+| .+||+|.++++
T Consensus 36 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGGT 109 (183)
T ss_dssp TCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECSC
T ss_pred CCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECCc
Confidence 5689999999999999998843 3566667776788877766 43 22222 3333 344 68999999766
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
..++.+|-++.|+ |||.+++.+ ..+....+.+.++...|++...
T Consensus 110 -------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 5678999999999 999999987 5677788888888888988765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=97.02 Aligned_cols=97 Identities=9% Similarity=0.139 Sum_probs=69.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sFD 284 (637)
.++|||||||+|.++..++++ + +++++++ +.+++.|+++ ...+.+...|... ++..+++||
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid-----~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDID-----GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC-----HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECC-----HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee
Confidence 469999999999999999987 3 4555554 4455555432 2357888888654 344467899
Q ss_pred EEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|++.... ++... ....+++++.++|||||.+++..
T Consensus 151 ~Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 151 VIMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EEEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99996543 33211 13679999999999999999974
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-08 Score=97.34 Aligned_cols=118 Identities=16% Similarity=0.072 Sum_probs=85.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC--CC-CCccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--TY-PRTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~--~y-p~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.+++...-++-.+..+. .+ +.+||+|.+.++|....
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 45899999999999999998865 56777877789999998853221111122222 24 38999999988877553
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH----------------------HHHHHHHHHHhcCCceeEE
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDV----------------------DILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------------~~~~~~~~~~~~~~W~~~~ 601 (637)
+...+|.++-|+|||||.++|.+.. -....++++++...+++..
T Consensus 131 ---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 131 ---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 5579999999999999999998511 0124577777777777653
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.2e-08 Score=99.09 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEecccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR 275 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~ 275 (637)
...++.+.+.+...++ .+|||||||+|.++..|++++..++.+ |+++.+++.++++ + .++.+..+|...
T Consensus 14 ~~i~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~L~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAALRPT--DVVLEVGPGTGNMTVKLLEKAKKVVAC---ELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTCCCTT--CEEEEECCTTSTTHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCC--CEEEEEcCcccHHHHHHHhhCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 3456677777765544 499999999999999999885444444 4455555555543 2 257888888888
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHH--------------HHH--HhcccCCeEEE
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYL--------------IEV--DRVLRPGGYWI 318 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L--------------~ei--~RvLKPGG~Lv 318 (637)
++++ +||+|+++..+ +|..+....++ +|+ .++|||||.++
T Consensus 89 ~~~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 89 TDLP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SCCC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ccch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7766 79999997655 44421111222 233 36899999873
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=93.41 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=69.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCCCC-CccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~~~~ 555 (637)
..+|||+|||.|.++..|.+. +.+|.++.++..+.++++ .++. |. +.+ +++ .+||+|.+.+++....
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~-~~~~~d~-~~~-~~~~~~fD~v~~~~~l~~~~- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTA-ENL-PLKDESFDFALMVTTICFVD- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBT-TBC-CSCTTCEEEEEEESCGGGSS-
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCC-EEEEccc-ccC-CCCCCCeeEEEEcchHhhcc-
Confidence 568999999999999999887 445666688999988854 2222 21 222 244 7999999988876543
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+...+|-++-|+|+|||.+++.+
T Consensus 117 --~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 117 --DPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEE
Confidence 45899999999999999999974
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-08 Score=97.00 Aligned_cols=98 Identities=20% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC-Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
....+|||+|||.|.++.+|++..- +|+.+|.++.++..+.++ |+ +-+.+.=.+.++ ++ .+||+|.+..
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRY 95 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEES
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECC
Confidence 4467999999999999999988743 677778877888877665 43 222221123333 44 8999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.... +.+.+|.|+.|+|||||++++.+
T Consensus 96 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 96 AAHHFS---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 776554 56899999999999999999975
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=98.60 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~-Lpfpd~sFDlV 286 (637)
..+|||||||+|.++..++++ ...++.+ |+++.+++.|+++. ..+.+...|... ++..+++||+|
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Dis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDIC---EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 459999999999999999987 2233333 44556666665542 347788777654 23346789999
Q ss_pred EeccccccCCcC-C--HHHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQY-A--DGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~-d--~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++... .++... . ...+++++.++|||||.+++..
T Consensus 194 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 98653 233211 1 2689999999999999999975
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-08 Score=96.87 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=78.3
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCCC-Ccc
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTYP-RTY 541 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~yp-~t~ 541 (637)
.++..+.. ....+|||+|||.|.++.+|++.+.- +|+.+|.++.++..+.++.- +.... |. +.++ +| .+|
T Consensus 35 ~l~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~-~~~~~f 109 (253)
T 3g5l_A 35 ELKKMLPD-FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIA-IEPDAY 109 (253)
T ss_dssp HHHTTCCC-CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCC-CCTTCE
T ss_pred HHHHhhhc-cCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCC-CCCCCe
Confidence 33333443 45789999999999999999887542 66777887789998888753 22222 22 2232 44 899
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|.+.++|... -+...+|-++-|+|||||.+++..
T Consensus 110 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 110 NVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998887765 356899999999999999999973
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=97.96 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=66.7
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~-Lpfpd~sFDlV 286 (637)
..+|||||||+|.++..++++ ...++.+ |+++.+++.|+++. ..+.+...|... ++..+++||+|
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~v---Did~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMC---EIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEE---CSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 459999999999999999987 2333333 55566666666542 346777777654 33356789999
Q ss_pred EeccccccCCcC-CH--HHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQY-AD--GLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~-d~--~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++... .|+.+. .. ..+++++.++|||||.+++..
T Consensus 186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98653 344321 11 678999999999999999975
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-08 Score=94.81 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-cccccc
Q 006633 457 LWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAM 534 (637)
Q Consensus 457 ~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~ 534 (637)
.|......+..++..... ...+|||+|||.|.++..|++... +|+.+|.++.++..+.++.- +..++ |.. .+
T Consensus 22 ~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~ 95 (239)
T 3bxo_A 22 DYAAEASDIADLVRSRTP--EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-DF 95 (239)
T ss_dssp CHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-TC
T ss_pred hHHHHHHHHHHHHHHhcC--CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-Hc
Confidence 344444444444433222 256899999999999999987643 56777887789988888731 22222 221 22
Q ss_pred CCCCCccceeee-ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 535 STYPRTYDLIHA-DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 535 ~~yp~t~Dl~H~-~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+ ++.+||+|.| .++|....+.-+...+|-++-|+|||||.+++.+
T Consensus 96 ~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 96 R-LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp C-CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred c-cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 2689999995 4466655444566799999999999999999963
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=93.84 Aligned_cols=142 Identities=9% Similarity=0.032 Sum_probs=93.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--------------------------------
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-------------------------------- 523 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-------------------------------- 523 (637)
....+|||+|||.|.++..|++... -+|+.+|.++.++..+.++--
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4468999999999999999988765 577888888788888765421
Q ss_pred ---c-chhh-ccccccCC-CC---CccceeeeccccccCC-CCcCHHHHHHHHhhcccCCcEEEEEeCHH----------
Q 006633 524 ---I-GTYQ-NWCEAMST-YP---RTYDLIHADSIFSLYK-DRCEMEDVLLEMDRILRPEGSVIIRDDVD---------- 583 (637)
Q Consensus 524 ---~-~~~~-~wce~~~~-yp---~t~Dl~H~~~lfs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------- 583 (637)
+ ..++ |..+ ... -+ .+||+|.+..++.... +.-+...+|-++-|+|||||++|+.+...
T Consensus 133 ~~~v~~~~~~d~~~-~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 133 RRAIKQVLKCDVTQ-SQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HHHEEEEEECCTTS-SSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhhheeEEEeeecc-CCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 2 2221 2222 222 23 7999999977766322 22245789999999999999999976211
Q ss_pred ------HHHHHHHHHhcCCceeEEeccCCC-------CCCcceEEEEEec
Q 006633 584 ------ILVKIKSITDGMEWEGRIADHENG-------PRQREKILFANKK 620 (637)
Q Consensus 584 ------~~~~~~~~~~~~~W~~~~~~~e~~-------~~~~~~~l~~~K~ 620 (637)
....+.++++...++......... .....-+++++|+
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 234677777777777654332211 1113446777774
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.7e-08 Score=99.64 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCee
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sFD 284 (637)
..+|||||||+|.++..++++. ++++|++ +.+++.|+++ ...+.+...|... ++..+++||
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid-----~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD 170 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEID-----EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 170 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC-----HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECC-----HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCce
Confidence 4699999999999999999872 4555554 4455555432 3457888887654 444568899
Q ss_pred EEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|++.... ++... ....+++++.++|||||.|++..
T Consensus 171 ~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 171 VIITDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 99986533 33210 23468999999999999999975
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=97.46 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=71.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|.++..|++..- -.|+.+|.++.++..+.++ |+ +-+++ |+ +.++ +| .+||+|++.+
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLP-FQNEELDLIWSEG 122 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCS-SCTTCEEEEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCC-CCCCCEEEEEecC
Confidence 56899999999999999987631 1667777777788877665 44 22222 32 2332 33 8999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++... +.+.+|-++-|+|||||++++.+
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87654 57899999999999999999986
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-08 Score=99.50 Aligned_cols=96 Identities=27% Similarity=0.306 Sum_probs=72.8
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~ 546 (637)
...+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +...+ |. +.+ ++| .+||+|.+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~ 156 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEI-PCEDNSYDFIWS 156 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSC-SSCTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc-ccC-CCCCCCEeEEEe
Confidence 3679999999999999999876 54 667777777888877665 44 22222 22 122 344 79999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+++....+ ...+|-|+-|+|||||.+++.+
T Consensus 157 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 157 QDAFLHSPD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp ESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhcCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 888876654 6899999999999999999985
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=98.09 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=91.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh--cccch----hhccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGT----YQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gl~~~----~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..++|||+|||+|+|+..|++.+. -.|+.+|.+++||...+.+ .++.. ..... ...+| .+||++-++-.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCS
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEee
Confidence 467999999999999999988753 3566778888899886542 11111 11111 12245 45999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------------------HHHHHHHHHHHhcCCceeEEec--cC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------------------VDILVKIKSITDGMEWEGRIAD--HE 605 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------------~~~~~~~~~~~~~~~W~~~~~~--~e 605 (637)
|. .++.+|-|+.|+|||||.+++-.. ...+.++.+.+....|.+.-.. .-
T Consensus 161 f~------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 161 FI------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp SS------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred Hh------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 75 358899999999999999988611 1256778888888899877443 22
Q ss_pred CCCC-CcceEEEEEec
Q 006633 606 NGPR-QREKILFANKK 620 (637)
Q Consensus 606 ~~~~-~~~~~l~~~K~ 620 (637)
.|+. +.|-++.++|.
T Consensus 235 ~g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 235 QGGHGNIEFLAHLEKT 250 (291)
T ss_dssp CCGGGCCCEEEEEEEC
T ss_pred CCCCcCHHHHHHhhhc
Confidence 3333 35677777663
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-08 Score=97.20 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=67.5
Q ss_pred CEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC-C-C-----CCCCeeE
Q 006633 220 RTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-Y-----PSRAFDM 285 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L-p-f-----pd~sFDl 285 (637)
.+|||||||+|..+..|++. + ++++|+++..+..+...+ .+.+. .+.+..++.... + + ++++||+
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 48999999999999999875 3 556666554333332222 22343 477777776542 3 2 2578999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|++... .. +...+++++.++|||||.+++..
T Consensus 160 V~~d~~----~~-~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 160 IFVDAD----KD-NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEECSC----ST-THHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEcCc----hH-HHHHHHHHHHHhCCCCeEEEEec
Confidence 998642 23 67889999999999999999874
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.9e-08 Score=93.92 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=93.3
Q ss_pred CceeEeeecccchhhhhhhcCCC--eEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCC-Cccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp-~t~Dl~H~ 546 (637)
...+|||+|||.|.++.+|++.. - ..|+.+|.++.++..+.++ |+ +-.+. |. +.+. ++ .+||+|.+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~ 112 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEK--GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIP-LPDNTVDFIFM 112 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCS-SCSSCEEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCC-CCCCCeeEEEe
Confidence 36689999999999999997652 1 1456667666788777666 33 22222 22 2222 44 78999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-------------HHHHHHHHHHhcCCceeEEeccCCCCCCcce
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-------------DILVKIKSITDGMEWEGRIADHENGPRQREK 613 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~ 613 (637)
.+++.... +...+|-|+-|+|||||.+++.+.. -....+.++++...++......- + ....
T Consensus 113 ~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~--~~~~ 186 (219)
T 3dh0_A 113 AFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-G--KYCF 186 (219)
T ss_dssp ESCGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-T--TTEE
T ss_pred ehhhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-C--CceE
Confidence 88887654 4589999999999999999998521 13577888888888886543222 1 2467
Q ss_pred EEEEEec
Q 006633 614 ILFANKK 620 (637)
Q Consensus 614 ~l~~~K~ 620 (637)
+++++|+
T Consensus 187 ~~~~~k~ 193 (219)
T 3dh0_A 187 GVYAMIV 193 (219)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 7888885
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.3e-08 Score=98.62 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=78.8
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccCCC-C
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTY-P 538 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~~y-p 538 (637)
.++..+.. . ..+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +..++.=.+.+..+ +
T Consensus 60 ~~l~~~~~-~-~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMGP-Q-KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTCS-S-CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcCC-C-CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 44444443 2 46899999999999999988854 567777777888888776 44 22333112334434 4
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+||+|.+.+++.... +.+.+|-|+-|+|||||.+++.+.
T Consensus 135 ~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 135 TPVDLILFHAVLEWVA---DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp SCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEECchhhccc---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8999999988887654 458999999999999999999753
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=95.58 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=66.9
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sFD 284 (637)
..+|||||||+|.++..++++ .++++|+++ .+++.|+++ ...+.+...|... ++..+++||
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG-----LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH-----HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH-----HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCce
Confidence 459999999999999999987 245565544 444444432 2457888887654 344567899
Q ss_pred EEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|++... .++... ....+++++.++|||||.|++..
T Consensus 166 ~Ii~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 166 VIIIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9998532 231110 23679999999999999999974
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-08 Score=98.18 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=87.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc------cchhh-ccccccCCCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
...+|||+|||.|.++.+|++.. ..+|+.+|.++.++..+.++.- +-.+. |+ +.+..-+.+||+|.+..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcch
Confidence 46799999999999999998875 2356777777788888877642 11222 21 222222368999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------------HHHHHHHHHhcCCceeEEec
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---------------ILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------------~~~~~~~~~~~~~W~~~~~~ 603 (637)
+....+. .+..+|.++-|+|||||.+++.+... ....+.++++...++.....
T Consensus 156 l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 156 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 7654431 24689999999999999999976311 35677888888888776543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.4e-08 Score=97.93 Aligned_cols=97 Identities=9% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCCCccceeeeccccccC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
....+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- +.... |. +.++ ++.+||+|++..+|...
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~ 130 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLHWV 130 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGGGC
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhhhC
Confidence 3467999999999999999988543 56677777789988887731 12221 22 2232 47899999998877654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
. +.+.+|-|+-|+|||||++++..
T Consensus 131 ~---d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 131 K---EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 56899999999999999999974
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-08 Score=93.33 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=85.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCC-CCCccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST-YPRTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~-yp~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||.|.++.+|++.+. .+|+.+|.++.++..+.++ |+-. +.-.+..+.. .+.+||+|.++.++.
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~- 136 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAE- 136 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHH-
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHH-
Confidence 46899999999999999988764 3667777777888888776 5422 2212222233 359999999976653
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEec
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 603 (637)
.+..+|-++-|+|||||++++.+ ..+....+.++++...++.....
T Consensus 137 -----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 137 -----ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 25788999999999999999975 34456777888887778776543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=87.63 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=82.3
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----ccc-c-hhh-ccccccCCCCCccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLI-G-TYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~-~-~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
....+|||+|||.|.++.+|++. +- ..|+.+|.++.++..+.++ |+- . .++ |..+.+...+.+||+|.+.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence 34679999999999999998876 22 4566777777788888765 442 1 222 3334444434789999986
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~ 600 (637)
+.+.. ..+|-++-|+|||||.+++.+. .+....+.++.+...+++.
T Consensus 102 ~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 102 GGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp C-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred CcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 66643 6799999999999999999864 4556666666666666554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=97.18 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEeccccC-CCCCCCe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSRAF 283 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~L-pfpd~sF 283 (637)
...+|||||||+|.++..+++. .+++++ +++.+++.|+++. ..+.+...|.... +..+++|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vD-----id~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICE-----IDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 152 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEE-----SCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEE-----CCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence 3469999999999999999876 244454 4556666666542 3577887776542 2236789
Q ss_pred eEEEeccccccCCcC-CH--HHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQY-AD--GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~-d~--~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|++.... ++... .. ..+++++.++|||||.+++...
T Consensus 153 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 153 DVIIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEEECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred eEEEEcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 999985433 44321 11 6899999999999999999853
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-08 Score=100.98 Aligned_cols=103 Identities=8% Similarity=0.112 Sum_probs=73.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
..+|||+|||+|.++.+|++. +---.+|+.+|.++.+++.+.+| |+..-+.-.|..+..+| ..||+|.+..++.
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 468999999999999888754 10112567788888999998876 44322222345566676 7799998876655
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
... .-+...+|-|+-|+|||||.+|++|.
T Consensus 151 ~~~-~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLE-PSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecC-chhHhHHHHHHHHHcCCCcEEEEEec
Confidence 432 22346799999999999999999863
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-07 Score=94.27 Aligned_cols=95 Identities=19% Similarity=0.300 Sum_probs=72.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc--c---cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG--L---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg--l---~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
...+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++- . +-..+ |+ +.++ +| .+||+|++..+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIP-LPDESVHGVIVVHL 113 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCC-SCTTCEEEEEEESC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCC-CCCCCeeEEEECCc
Confidence 467899999999999999998853 6777788878999888872 1 22222 22 2232 44 79999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|.... +.+.+|-|+-|+|||||.+++.
T Consensus 114 l~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 76554 5689999999999999999986
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=92.10 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=79.7
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc---chhh-ccccccCCCCCccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
....+|||+|||+|.++.+|++.+ ..|+.+|.++.++..+.++ |+- .+++ |..+.+.. ...||+|-++
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~~~D~v~~~ 129 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-LPLPEAVFIG 129 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-SCCCSEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-CCCCCEEEEC
Confidence 346789999999999999998773 3567777777888887765 443 2222 21121211 2479998875
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~ 600 (637)
+.+ +.+ +|-++-|+|||||.+++.. ..+....+.+.++...+++.
T Consensus 130 ~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 130 GGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp SCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred Ccc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 522 456 9999999999999999975 45677777777777666655
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-08 Score=98.68 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc---chhh-ccccccCCCC-Cccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~-~wce~~~~yp-~t~Dl~H~ 546 (637)
....+|||+|||.|.++..|++.. ..+|+.+|.++.++..+.++ |+- .+.+ |.. .+ ++| .+||+|.+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~ 135 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM-DL-PFEDASFDAVWA 135 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SC-CSCTTCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc-cC-CCCCCCccEEEE
Confidence 346799999999999999997641 13666777777788877765 542 2222 221 22 344 79999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.++|.... +.+.+|-|+-|+|||||.+++.+
T Consensus 136 ~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 136 LESLHHMP---DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp ESCTTTSS---CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred echhhhCC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 88887554 35899999999999999999985
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.3e-08 Score=99.21 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=83.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCCCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ |+ +-+++ |.. .+.. +.+||+|.+..+|.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCC-CSCEEEEEECSSGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccc-cCCccEEEEccchh
Confidence 56899999999999999998865 677778877788777665 43 22222 221 1222 68999999998887
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------HHHHHHHHHHhcCCceeEEec
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--------------DILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~~~~~~~~~~~~~~W~~~~~~ 603 (637)
.. +.-.+..+|-++-|+|||||.++|.... -....++++... |++..++
T Consensus 196 ~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 196 FL-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 54 3346779999999999999998774211 013466676666 8876553
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=97.28 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=72.6
Q ss_pred CCceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCCCccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
....+|||+|||+|.++..|++. +. +|+.+|.++.++..+.++ ++ +-.+. |.. . .+++.+||+||+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~-~~~~~~fD~v~~ 95 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-E-IELNDKYDIAIC 95 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-T-CCCSSCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-h-cCcCCCeeEEEE
Confidence 34679999999999999999876 22 455667666777777665 11 22222 322 2 234789999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
..++.... +.+.+|.++-|+|||||++++.+..
T Consensus 96 ~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 96 HAFLLHMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ESCGGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CChhhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88877554 4589999999999999999988654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-07 Score=100.60 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C-CEEEEcCccccHHHHHHHHHHc----CC-CeEEEEeccccCC--
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N-ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-- 277 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~-v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~~~Lp-- 277 (637)
+..++...++. +|||+|||+|..+..|++. + ..++.+ |+++.+++.+.++ +. ++.+...|...++
T Consensus 251 ~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~---D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~ 325 (450)
T 2yxl_A 251 ASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAF---DVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI 325 (450)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred HHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---cCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence 44455555544 9999999999999999874 2 334444 4444454444332 54 5788888887776
Q ss_pred CCCCCeeEEEe------ccccccCC-------cCCH-------HHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHC------SRCLIPWG-------QYAD-------GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~------s~~L~h~~-------~~d~-------~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|++ ..++.+.+ +++. ..++.++.++|||||.+++++.
T Consensus 326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 56688999996 22222211 1011 5789999999999999999875
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-08 Score=98.54 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
....+|||+|||.|.++..|.+. +. .|+.+|.++.++..+.++ |+ +-... |. +.++.-+.+||+|++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANI-FSLPFEDSSFDHIFV 111 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG-GGCCSCTTCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc-ccCCCCCCCeeEEEE
Confidence 34679999999999999999876 33 556667776788877766 44 22222 22 222222489999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..++.... +.+.+|-++.|+|||||++++.+
T Consensus 112 ~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 112 CFVLEHLQ---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred echhhhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88877554 45799999999999999999975
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=90.61 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=88.1
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccccccCCC--CCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTY--PRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++. +..-+.-.+..+..+ +.+||+|.+.++|..
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 4999999999999999988754 5677788778888887764 212122222333333 379999999888875
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------HHHHHHHHHHhcCCceeEEec
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDDV-----------DILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------~~~~~~~~~~~~~~W~~~~~~ 603 (637)
.. .-+...+|-++-|+|||||++++.+-. -....+.++++...|+....+
T Consensus 145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 53 346689999999999999999986421 134678888888888876443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=91.93 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=95.2
Q ss_pred ceeEeeeccc-chhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAY-LGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g-~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+||| .|.++.+|++.. ..+|+.+|.++.++..+.++ |+ +.+++ |+ +.+..+| .+||+|-++-.
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECCC
Confidence 5789999999 999999988762 23567777777788777654 43 23333 21 2355565 89999998755
Q ss_pred cccCC----------------CCcCHHHHHHHHhhcccCCcEEEEE--eCHHHHHHHHHHHhcCCceeEEeccCCCCCCc
Q 006633 550 FSLYK----------------DRCEMEDVLLEMDRILRPEGSVIIR--DDVDILVKIKSITDGMEWEGRIADHENGPRQR 611 (637)
Q Consensus 550 fs~~~----------------~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 611 (637)
|.... ....+..+|-++-|+|||||.+++. ...+....+.+.++...|++.......|. ..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~ 211 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RW 211 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--C
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eE
Confidence 53211 1122478999999999999999984 34467788888889999988876555443 34
Q ss_pred ceEEEEEe
Q 006633 612 EKILFANK 619 (637)
Q Consensus 612 ~~~l~~~K 619 (637)
-.+|+.+|
T Consensus 212 ~~~l~f~~ 219 (230)
T 3evz_A 212 RHSLIFFK 219 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 55666665
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=92.33 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=73.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cch-------hhccccccCC--C-CCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGT-------YQNWCEAMST--Y-PRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~-------~~~wce~~~~--y-p~t~Dl~H~ 546 (637)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- .+. +.-.+..+.. + +.+||+|.+
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 56899999999999999988854 67777877788888877432 010 1111222222 3 389999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..++....+.-....+|-++-|+|||||.+++.+
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8888766655444589999999999999999975
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-08 Score=98.13 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCceeEeeecccchhhhhhhcC---CCeEEEEeccCCCCcchhHHHHhh-----cccc---hhh-ccccccCCCC-----
Q 006633 476 GRYRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYER-----GLIG---TYQ-NWCEAMSTYP----- 538 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eR-----gl~~---~~~-~wce~~~~yp----- 538 (637)
....+|||+|||.|.++..|++ .. .+|+.+|.++.++..+.++ |... .++ |. +.++.-.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~ 110 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS-DDFKFLGADSVD 110 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-TCCGGGCTTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-HhCCcccccccc
Confidence 3478999999999999999984 43 3667778887888888876 3322 222 22 2222112
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 539 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 539 -~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.+||+|++..++... +...+|-++.|+|||||.+++
T Consensus 111 ~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 699999998777654 789999999999999999998
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=96.29 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc---------------CCCeEEEEecccc-CCCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER---------------GVPALIGVMASIR-LPYP 279 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er---------------g~~~~~~~~d~~~-Lpfp 279 (637)
..+|||||||+|.++..+++++ ++++|++ +.+++.|+++ ...+.+...|... ++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid-----~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEID-----EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESC-----HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECC-----HHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 4599999999999999999873 4555554 4555555433 2346777777543 222
Q ss_pred CCCeeEEEeccccccCCcC-C--HHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQY-A--DGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~-d--~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++||+|++.... ++... . ...+++++.++|||||.+++..
T Consensus 150 ~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 NRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5789999986543 33210 1 3678999999999999999974
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=94.43 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccc
Q 006633 460 KRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEA 533 (637)
Q Consensus 460 ~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~ 533 (637)
..+.....++..+.. ....+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +..++ |..+
T Consensus 25 ~~~~~~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~- 99 (252)
T 1wzn_A 25 AEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE- 99 (252)
T ss_dssp HHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-
T ss_pred HHHHHHHHHHHHhcc-cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-
Confidence 334444444444333 3457999999999999999998865 677788887888888765 33 22222 2222
Q ss_pred cCCCCCccceeeecc-ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 534 MSTYPRTYDLIHADS-IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 534 ~~~yp~t~Dl~H~~~-lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+ .++.+||+|.+.. .+. +.+.-+...+|-++-|+|+|||.+++.-
T Consensus 100 ~-~~~~~fD~v~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 100 I-AFKNEFDAVTMFFSTIM-YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp C-CCCSCEEEEEECSSGGG-GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-ccCCCccEEEEcCCchh-cCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 1 2458899998742 222 2233356789999999999999999863
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-08 Score=96.80 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=72.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-----cchhh-ccccccCCCC-Cccceeeec-c
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----IGTYQ-NWCEAMSTYP-RTYDLIHAD-S 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~-~wce~~~~yp-~t~Dl~H~~-~ 548 (637)
...+|||+|||+|.++.+|.+.+. -+|+.+|.++.++..+.++.- +-+++ |+.+-..++| .+||+|.++ .
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 357899999999999999988654 377788888899999888652 22222 3333233565 899999883 1
Q ss_pred ccc-cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 549 IFS-LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.++ ...+.-..+.+|-|+-|+|||||.+++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 111 111233345789999999999999998753
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-08 Score=96.43 Aligned_cols=97 Identities=21% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
....+|||+|||+|.++..|++.+. +|+.+|.++.++..+.++.-+..++.=.+.++ +| .+||+||+.+++...
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~- 107 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHF- 107 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGC-
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhc-
Confidence 3467999999999999999998654 66777777677776666643333332223333 54 899999998887655
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
-+.+.+|-|+-|+|| ||++++.+
T Consensus 108 --~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 108 --SHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp --SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred --cCHHHHHHHHHHHhC-CcEEEEEE
Confidence 456899999999999 99888764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.9e-08 Score=99.66 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=69.8
Q ss_pred CCceeEeeecccchhhhhh----hcC--CCeEEEEeccCCCCcchhHHHHhh-----cccchhhccc----cccC-----
Q 006633 476 GRYRNLLDMNAYLGGFAAA----LVD--DPLWVMNTVPVEAKINTLGVIYER-----GLIGTYQNWC----EAMS----- 535 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~----l~~--~~v~~mnv~~~~~~~~~l~~~~eR-----gl~~~~~~wc----e~~~----- 535 (637)
....+|||+|||+|.++.. |.. ..+ ...++.+|.+..++..+.++ |+-.+--.|. +.+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 3466899999999986643 322 233 23457778888999988876 3311111121 2232
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.++ .+||+|++..++-... +.+..|-||-|+|||||++++..
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 243 8999999977776554 46899999999999999999963
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.3e-07 Score=97.75 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=71.9
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCC---CeEEEEecccc-CCC---CCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LPY---PSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~-Lpf---pd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..+++. .|+++|+++..+..+..+. ..++. ++.+..+|+.. ++. ...+||+|++
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~-~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 348999999999999999986 3677888776665554433 33444 57888888654 221 2458999998
Q ss_pred ccccc-----cCCc--CCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 289 SRCLI-----PWGQ--YADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 289 s~~L~-----h~~~--~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
..-.. .... .+...++.++.++|+|||.++++..+
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 54331 1111 03345778889999999999998753
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.5e-08 Score=94.50 Aligned_cols=99 Identities=12% Similarity=0.217 Sum_probs=74.3
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
....+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++.- +...+ |. +.++ +| .+||+|.+..++
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l 117 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADL-DKLH-LPQDSFDLAYSSLAL 117 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCG-GGCC-CCTTCEEEEEEESCG
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcCh-hhcc-CCCCCceEEEEeccc
Confidence 3467899999999999999988754 156666777788888888753 22222 22 2232 44 899999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.... +...+|-++-|+|||||.+++.+.
T Consensus 118 ~~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 118 HYVE---DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 6553 568999999999999999999753
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=93.17 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCC--CCccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTY--PRTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~y--p~t~Dl~H~~~lf 550 (637)
....+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++-- .+-+.-.+..+..+ +.+||+|.+..++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l 119 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSI 119 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcc
Confidence 44689999999999999999876 32 56667777788888887721 11111122333333 3899999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
....+ -....+|-|+-|+|||||.+++.+
T Consensus 120 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 120 HHLED-EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75532 123469999999999999999986
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=92.89 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=65.7
Q ss_pred CEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHH----HcCC--CeEEEEeccccC-C-C-----CCC
Q 006633 220 RTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIRL-P-Y-----PSR 281 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~----erg~--~~~~~~~d~~~L-p-f-----pd~ 281 (637)
++|||||||+|..+..|++. + ++++|++ +.+++.|+ +.+. .+.+..++.... + + +++
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~-----~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFD-----REAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESC-----HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 48999999999999999875 3 4555554 44444443 2344 367777776442 2 2 257
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+||+|++.. ... +...+++++.++|||||.+++..
T Consensus 147 ~fD~I~~d~----~~~-~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 147 SYDFGFVDA----DKP-NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CEEEEEECS----CGG-GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcCEEEECC----chH-HHHHHHHHHHHhcCCCeEEEEec
Confidence 899999853 233 67789999999999999999874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=89.84 Aligned_cols=129 Identities=9% Similarity=0.082 Sum_probs=85.2
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCC--CCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTY--PRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~y--p~t~Dl~H~~~ 548 (637)
..+|||+|||.|.++.+|+.. +- .+|+.+|.++.++..+.++ |+ +-+++ ..+..+ +.+||+|.+++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ---SRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE---CCTTTSCCCSCEEEEECSC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEe---cchhhCCccCCcCEEEEec
Confidence 358999999999999998764 22 2556667666777777654 54 23332 222233 27899999854
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEec--cCCCCCCcceEEEEEec
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD--HENGPRQREKILFANKK 620 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~--~e~~~~~~~~~l~~~K~ 620 (637)
+ ..++.++-++-|+|+|||++++......-..++++.+ .|+..... .-........+++++|+
T Consensus 141 ~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 141 F-------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp S-------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3 4568999999999999999999866555566666665 67654311 11112235677777764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=98.79 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=85.7
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
....+|||+|||.|++++.++.+ + .-.|+.+|.++.++..+.++ |+ .-+.-.+.....+| .+||+|.+.++
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCC
Confidence 34789999999999988665432 1 13566667777888888776 66 32222233334455 89999987443
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH---H-HHH-HHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI---L-VKI-KSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~---~-~~~-~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
.-+.+.++-|+-|+|||||.+++++.... + ..+ ....+ .|+.....+-.+. ....|.+++|
T Consensus 198 ------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 198 ------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp ------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTT-CCCEEEEEEE
T ss_pred ------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCC-cCcEEEEEEc
Confidence 24668999999999999999999974321 0 001 11223 5666654444332 3467888888
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-07 Score=90.03 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=72.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccc----hhhccccccC--CCC-Cccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG----TYQNWCEAMS--TYP-RTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~----~~~~wce~~~--~yp-~t~Dl~H~ 546 (637)
..+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++ |+-. -+.-.+..+. ..+ .+||+|.+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 56999999999999999987521 02566677777888888776 2210 1111112222 222 79999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD 583 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~ 583 (637)
..+|.... .-++..+|-++-|+|||||.+++.+..+
T Consensus 109 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 109 IEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp ESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 88887552 2345789999999999999999886543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-07 Score=90.37 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=71.8
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-----cchhh-ccccccCCCCCccceeeecc-ccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----IGTYQ-NWCEAMSTYPRTYDLIHADS-IFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~-~wce~~~~yp~t~Dl~H~~~-lfs 551 (637)
.+|||+|||.|.++..|++. .+|+.+|.++.++..+.++.- +...+ |..+ + ++|.+||+|.+.. ++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-L-ELPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-C-CCSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-c-CCCCCcCEEEEeCCchh
Confidence 78999999999999999887 477788888788888877631 22222 2211 1 2458999999865 666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
...+.-+...+|-++-|+|||||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5555556778999999999999999984
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-08 Score=93.74 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=88.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhh-ccccccCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
..+|||+|||.|.++..|++.+.- +|+.+|.++.++..+.++.- +-+.+ |.. .+ +++ .+||+|.+.++|.
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~-~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KL-DFPSASFDVVLEKGTLD 118 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SC-CSCSSCEEEEEEESHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cC-CCCCCcccEEEECcchh
Confidence 568999999999999999877532 56666777778888877631 22222 222 22 344 7999999988875
Q ss_pred cCC------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHH--HhcCCceeEEeccCCCCCCcceEEEE
Q 006633 552 LYK------------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSI--TDGMEWEGRIADHENGPRQREKILFA 617 (637)
Q Consensus 552 ~~~------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~--~~~~~W~~~~~~~e~~~~~~~~~l~~ 617 (637)
... +.-+...+|-|+-|+|||||.+++.+....-. ...+ .....|.......+++. .-.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 195 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF-RTRHYAQAYYGWSLRHATYGSGF--HFHLYLM 195 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH-HHHHHCCGGGCEEEEEEEESGGG--CEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH-HHHHHhccccCcEEEEEEecCcc--eEEEEEE
Confidence 332 12245789999999999999999987543211 1222 34456876654443332 3456666
Q ss_pred Ee
Q 006633 618 NK 619 (637)
Q Consensus 618 ~K 619 (637)
+|
T Consensus 196 ~~ 197 (215)
T 2pxx_A 196 HK 197 (215)
T ss_dssp EE
T ss_pred Ee
Confidence 66
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-07 Score=90.94 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=88.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lp 277 (637)
.++.+.++++ ++ .+|||||||+|.++..|++.+ ++++|+++..+..+..+. ...+. .+.+..+|.....
T Consensus 11 RL~~i~~~v~--~g--~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~-~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 11 RLQKVANYVP--KG--ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNV-SEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHTTSC--TT--EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCC--CC--CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhhcc
Confidence 3445555553 33 489999999999999999874 566766554444333332 23344 4788888877766
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhcee
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
.++..||+|+.....-. -...++.+..+.|+++|+|+++.. .. ...+.+.....+|.
T Consensus 86 ~~~~~~D~IviaGmGg~----lI~~IL~~~~~~l~~~~~lIlqp~------------~~-------~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 86 EEADNIDTITICGMGGR----LIADILNNDIDKLQHVKTLVLQPN------------NR-------EDDLRKWLAANDFE 142 (230)
T ss_dssp CGGGCCCEEEEEEECHH----HHHHHHHHTGGGGTTCCEEEEEES------------SC-------HHHHHHHHHHTTEE
T ss_pred ccccccCEEEEeCCchH----HHHHHHHHHHHHhCcCCEEEEECC------------CC-------hHHHHHHHHHCCCE
Confidence 55557999886554311 355688899999999999999853 11 23466777778887
Q ss_pred eecc
Q 006633 358 KLIQ 361 (637)
Q Consensus 358 ~v~~ 361 (637)
.+.+
T Consensus 143 i~~E 146 (230)
T 3lec_A 143 IVAE 146 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-07 Score=91.78 Aligned_cols=121 Identities=10% Similarity=0.065 Sum_probs=83.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-c--------------cchhhccccccCCCC----
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L--------------IGTYQNWCEAMSTYP---- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l--------------~~~~~~wce~~~~yp---- 538 (637)
..+|||+|||.|.++.+|++++. .|+.+|.++.++..+.+|- + ..-+.-.|..+...|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 56899999999999999998764 6888898889999998872 1 011112233444444
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcE-EEEE-eCH----------HHHHHHHHHHhcCCceeEEec
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGS-VIIR-DDV----------DILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~-~i~~-d~~----------~~~~~~~~~~~~~~W~~~~~~ 603 (637)
.+||+|-+.++|.... ..+.+.++-||-|+|||||. +++. +-. -..+.+++++.. .|++....
T Consensus 100 ~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp HSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred CCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEec
Confidence 6899999877775443 23456789999999999998 3333 210 024667777776 77766443
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-07 Score=94.00 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=66.3
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccCCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.++|||||||+|.++..+++++..++.+ |+++.+++.|++. ...+.+...|..... ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~v---eid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDTHIDFV---QADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSCEEEEE---CSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 4699999999999999998764222233 5566666666543 234677777776554 789999986
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. . ++..+++++.++|||||.+++..
T Consensus 147 ~-----~--dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 Q-----E--PDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp S-----C--CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred C-----C--ChHHHHHHHHHhcCCCcEEEEEc
Confidence 2 2 45569999999999999999964
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=98.03 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=75.5
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccC--CCC-
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMS--TYP- 538 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~--~yp- 538 (637)
.++..+..-....+|||+|||.|.++..|+++ + ..|+.+|.++.++..+.++ |+-.-+.-.+..+. ++|
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34444441145779999999999999999876 4 3566677777788877764 44211111122222 254
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+||+|.+..+|... +.+.+|-|+.|+|||||.+++.+
T Consensus 184 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 184 GAVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp TCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999998887755 28999999999999999999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-07 Score=87.22 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=91.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCC-Cccceeeec-cccccC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHAD-SIFSLY 553 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp-~t~Dl~H~~-~lfs~~ 553 (637)
..+|||+|||.|.++..|.+.+. +|+.+|.++.++..+.++.- +.+++ |..+ + .+| .+||+|.++ .++...
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~-~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-D-QISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-S-CCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-C-CCCCCceeEEEECCcHHhhc
Confidence 56899999999999999988754 66777777678888777632 22222 2221 1 244 799999997 455543
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCceeEEeccC--CCC---CCcceEEEEEec
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSITDGMEWEGRIADHE--NGP---RQREKILFANKK 620 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e--~~~---~~~~~~l~~~K~ 620 (637)
..-+...+|-++-|+|+|||.+++..... ....+.++++...+++...... ..+ ..+.-+++++|+
T Consensus 122 -~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 -AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp -CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred -ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 22245789999999999999999975432 4566777777777776643221 111 234557777774
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-07 Score=92.67 Aligned_cols=163 Identities=12% Similarity=0.013 Sum_probs=103.4
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--c
Q 006633 452 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--I 524 (637)
Q Consensus 452 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~ 524 (637)
....+.|.+++-.-..++..+.. ....+|||+|||.|..+..|+.. +- ..|+.+|.++.++.++.+. |+ +
T Consensus 56 ~~~~~~~~~~~~ds~~~l~~~~~-~~~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v 132 (249)
T 3g89_A 56 RGEEEVVVKHFLDSLTLLRLPLW-QGPLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGA 132 (249)
T ss_dssp -CHHHHHHHHHHHHHGGGGSSCC-CSSCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CCHHHHhhceeeechhhhccccc-CCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCce
Confidence 34456777766543344433332 34678999999999998887643 22 2456667776777777654 55 3
Q ss_pred chhhccccccCC---CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---CHHHHHHHHHHHhcCCce
Q 006633 525 GTYQNWCEAMST---YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---DVDILVKIKSITDGMEWE 598 (637)
Q Consensus 525 ~~~~~wce~~~~---yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~~~~~~~~~~~~~~~W~ 598 (637)
-+++.-.+.+.. ++.+||+|-+..+ .+++.++-++-|+|||||.+++-. ..+.+..+++.++.+.|+
T Consensus 133 ~~~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 133 RALWGRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGR 205 (249)
T ss_dssp EEEECCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEE
T ss_pred EEEECcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCe
Confidence 444422233332 3479999988443 467899999999999999998854 356777777778888887
Q ss_pred eEEec-c-CCCCCCcceEEEEEecCCCC
Q 006633 599 GRIAD-H-ENGPRQREKILFANKKYWTA 624 (637)
Q Consensus 599 ~~~~~-~-e~~~~~~~~~l~~~K~~w~~ 624 (637)
..... - -.+....-.+++.+|.-.++
T Consensus 206 ~~~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 206 LGEVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 65322 1 11222234566677755544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-07 Score=89.92 Aligned_cols=96 Identities=28% Similarity=0.436 Sum_probs=70.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-ccchhhccccccCCCC-CccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-LIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
...+|||+|||.|.++..| +. -+|+.+|.++.++..+.++. -+..++.-.+.+ ++| .+||+|.+.+++....
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEAL-PFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSC-CSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccC-CCCCCcEEEEEEcChhhhcC
Confidence 3568999999999999998 22 15566677778888888873 122222111222 244 7999999988776554
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+...+|.|+-|+|||||.+++.+.
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEec
Confidence 568999999999999999999853
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.9e-07 Score=95.69 Aligned_cols=101 Identities=13% Similarity=-0.006 Sum_probs=66.7
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccC-CCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRL-PYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~L-pfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..++..+..++.+ |+++.+++.|+ .++....+...|.... +...+.||+|++..-..
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~av---Dis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAV---DKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEE---ECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4499999999999999999876444333 44445544443 3355555667776553 22233499999864321
Q ss_pred cCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-... +...++.++.++|||||.|++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11100 345789999999999999997754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-07 Score=91.87 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=89.3
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~ 547 (637)
...+|||+|||.|.++..|+++.-. +|+.+|.++.++..+.++ |+ +-+++ |..+....++ .+||+|-++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 3578999999999999999887442 677888887788777664 44 33343 4433333354 899999997
Q ss_pred ccccc-----------------CCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSL-----------------YKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~-----------------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
--|.. +...+.++.++.++-|+|||||.+++--..+.+..+.+.++...|...
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 55422 122356778999999999999999998777778888888888888765
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-07 Score=96.11 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~L 276 (637)
...++.+.+.+...++ .+|||||||+|.++..|++++..++.+ |+++.+++.++++ + .++.+..+|...+
T Consensus 28 ~~i~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~La~~~~~v~~v---Di~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSS--DIVLEIGCGTGNLTVKLLPLAKKVITI---DIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEECCTTSTTHHHHTTTSSEEEEE---CSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred HHHHHHHHHhcCCCCc--CEEEEEcCcCcHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence 3456667777665544 499999999999999999885444444 4444555544432 3 3577888888777
Q ss_pred CCCCCCeeEEEeccccccCC
Q 006633 277 PYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~ 296 (637)
+++ +||+|+++..+ ++.
T Consensus 103 ~~~--~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 103 VFP--KFDVCTANIPY-KIS 119 (299)
T ss_dssp CCC--CCSEEEEECCG-GGH
T ss_pred Ccc--cCCEEEEcCCc-ccc
Confidence 654 79999998655 454
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.1e-07 Score=90.93 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=85.9
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpf 278 (637)
++.+.++++ ++ .+|||||||+|.++..|++.+ ++++|+++..+..+..+. ...++ .+.+..+|......
T Consensus 12 L~~i~~~v~--~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~-~~~gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 12 LEKVASYIT--KN--ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV-RSSGLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHHTTCC--SS--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCC--CC--CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEEecchhhccC
Confidence 445555553 33 489999999999999999874 566666554444333322 23354 37888888766655
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceee
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 358 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~ 358 (637)
++..||+|+.....-. -...++.+..+.|+++|+|+++.. .. ...+++.....+|..
T Consensus 87 ~~~~~D~IviagmGg~----lI~~IL~~~~~~L~~~~~lIlq~~------------~~-------~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGGT----LIRTILEEGAAKLAGVTKLILQPN------------IA-------AWQLREWSEQNNWLI 143 (244)
T ss_dssp GGGCCCEEEEEEECHH----HHHHHHHHTGGGGTTCCEEEEEES------------SC-------HHHHHHHHHHHTEEE
T ss_pred ccccccEEEEeCCchH----HHHHHHHHHHHHhCCCCEEEEEcC------------CC-------hHHHHHHHHHCCCEE
Confidence 4446999987554311 355688999999999999999853 11 234666777778876
Q ss_pred ecc
Q 006633 359 LIQ 361 (637)
Q Consensus 359 v~~ 361 (637)
+.+
T Consensus 144 ~~E 146 (244)
T 3gnl_A 144 TSE 146 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-07 Score=91.94 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=75.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCCCC-CccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
...+|||+|||.|.++.+|.+.+ .+++.+|.++.++..+.++.. ..++ |..+...+++ .+||+|.+.+++....
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 46799999999999999999886 467777887788888877753 2222 3332224455 8999999988887554
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+.+.+|-++-|+|+|||++++..
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 45899999999999999999975
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=88.14 Aligned_cols=115 Identities=14% Similarity=0.222 Sum_probs=82.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
...+|||+|||.|.++..|++.. .+|+.+|.++..+..+.++ |+ +-+++ |+.+.+.. ...||+|-+++
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~ 108 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-IPDIDIAVVGG 108 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-SCCEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-CCCCCEEEECC
Confidence 35799999999999999998876 4677777776778777663 33 22222 22221211 14899999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~ 601 (637)
.+. .+..+|-++-|+|+|||.+++.+. .+....+.++++...|++..
T Consensus 109 ~~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 109 SGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp CTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred chH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 652 468999999999999999999764 56777788887777776554
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=93.16 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCCCccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
....+|||+|||.|.++.+|.+. +. +|+.+|.++.++..+.++.- +-..+.=.+.++ .+.+||+|++..+|..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhh
Confidence 44678999999999999998765 32 34555666688888888721 122221112333 3489999999887775
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.. +.+.+|-|+-|+|||||++++..
T Consensus 108 ~~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 VP---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ST---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CC---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 53 56899999999999999999985
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-07 Score=89.14 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=78.8
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccccc
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ |+ +.++. |. +.+ .+| .+||+|.+. |..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADF-DIVADAWEGIVSI--FCH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTB-SCCTTTCSEEEEE--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhc-CCCcCCccEEEEE--hhc
Confidence 899999999999999998864 777788887888888776 33 22222 21 222 244 799999883 332
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------------HHHHHHHHHHhcCCceeEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDDV-----------------DILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~ 601 (637)
+ ..-+...+|-++-|+|||||.+++.+.. -....++++++ .|++..
T Consensus 105 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 105 L-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp C-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 2 3335678999999999999999998421 13356666666 666653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-07 Score=93.73 Aligned_cols=96 Identities=22% Similarity=0.353 Sum_probs=72.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh--ccccccCCCC-CccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ--NWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~--~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||.|.++..|.+.+. +|+.+|.++.++..+.++.. +.+. |. +.++ +| .+||+|-+.+++-.+.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~-~~~~~~d~-~~~~-~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGV-KNVVEAKA-EDLP-FPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTC-SCEEECCT-TSCC-SCTTCEEEEEECSSHHHHC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcC-CCEEECcH-HHCC-CCCCCEEEEEEcchhhhcc
Confidence 56899999999999999998864 67777888889999988865 2111 11 2222 44 7999999876443332
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
. +...+|-|+-|+|||||.+++...
T Consensus 129 ~--~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 129 E--NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2 278999999999999999999753
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8.2e-07 Score=96.73 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=77.8
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--CCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPS 280 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--fpd 280 (637)
.+..++...++ .+|||+|||+|..+..+++. .++++|+++..+..... .+...+.++.+...|...++ +++
T Consensus 237 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~-~~~~~g~~~~~~~~D~~~~~~~~~~ 313 (429)
T 1sqg_A 237 GCMTWLAPQNG--EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD-NLKRLGMKATVKQGDGRYPSQWCGE 313 (429)
T ss_dssp THHHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHH-HHHHTTCCCEEEECCTTCTHHHHTT
T ss_pred HHHHHcCCCCc--CeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-HHHHcCCCeEEEeCchhhchhhccc
Confidence 44555555554 49999999999999999875 36777777655544333 23344666788888877765 566
Q ss_pred CCeeEEEec------cccccCC-------cCC-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCS------RCLIPWG-------QYA-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s------~~L~h~~-------~~d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|++. .++.+.+ .++ ...++.++.++|||||++++++.
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 889999962 1222211 101 14789999999999999999874
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-07 Score=96.36 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCchHHHHHhhc---------CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---------~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
...+|||+|||+|.++..+++. .+.++++++..+..+..... ..+..+.+..+|... +.+.+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCC-ccccCCccEEEE
Confidence 3458999999999999888754 24555554433332222222 235567788777655 335678999999
Q ss_pred ccccccCCcCC---------------H-HHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYA---------------D-GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d---------------~-~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+..+.++..++ . ..++.++.+.|||||.+++..|
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 98765443211 1 2589999999999999999986
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.5e-07 Score=89.75 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=86.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cc-----hhhccc-cccCCCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IG-----TYQNWC-EAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~-----~~~~wc-e~~~~yp~t~Dl~H~~~l 549 (637)
...+|||+|||+|+|+..|++.+. -.|+.+|.+++++..+..+.- +. -+...+ +.+.. .-||.+-++.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 356899999999999999988864 267778888889988766432 11 111111 22221 12455555555
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------------------H---HHHHHHHHHHhcCCceeEEeccC--
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------------------V---DILVKIKSITDGMEWEGRIADHE-- 605 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------------------~---~~~~~~~~~~~~~~W~~~~~~~e-- 605 (637)
|+. +..+|-|+-|+|||||.+++... . .....+.++++...|++...+..
T Consensus 113 ~~~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 113 FIS------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp SSC------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred hhh------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 543 37899999999999999998611 1 14456777788888887755432
Q ss_pred CCCC-CcceEEEEEec
Q 006633 606 NGPR-QREKILFANKK 620 (637)
Q Consensus 606 ~~~~-~~~~~l~~~K~ 620 (637)
.|+. +.|.++.++|.
T Consensus 187 ~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 187 KGGAGNVEFLVHLLKD 202 (232)
T ss_dssp CBTTTBCCEEEEEEES
T ss_pred CCCCCCHHHHHHHhhc
Confidence 2222 35677777773
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=93.36 Aligned_cols=103 Identities=8% Similarity=0.003 Sum_probs=72.9
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-----c---------------------------
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-----L--------------------------- 523 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-----l--------------------------- 523 (637)
....+|||+|||+|.+...++..+. -+|+.+|.++.++..+.++- -
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3467899999999999888887765 47888899888888776531 0
Q ss_pred ---cc-hhh-cccc--ccCCC-CCccceeeeccccccC-CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 524 ---IG-TYQ-NWCE--AMSTY-PRTYDLIHADSIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 524 ---~~-~~~-~wce--~~~~y-p~t~Dl~H~~~lfs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|. +++ |..+ .+... ..+||+|-+..++... .+.-++..+|-+|-|+|||||+||+++
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 00 111 2222 11112 2689999998777642 333456789999999999999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-07 Score=101.33 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=71.8
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCC-
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLP- 277 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lp- 277 (637)
+..++...++. +|||+|||+|..+..|+++ .++++|+ ++.+++.++ ..+..+.+...|...++
T Consensus 93 ~a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDi-----s~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~ 165 (464)
T 3m6w_A 93 VGVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLANEV-----DGKRVRGLLENVERWGAPLAVTQAPPRALAE 165 (464)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECS-----CHHHHHHHHHHHHHHCCCCEEECSCHHHHHH
T ss_pred HHHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCeEEEEECCHHHhhh
Confidence 34455545544 9999999999999999865 2455555 444444443 23555777777776665
Q ss_pred CCCCCeeEEEe----c--cccc-------cCCcCC-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHC----S--RCLI-------PWGQYA-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~----s--~~L~-------h~~~~d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+++||+|++ + .++. +|..++ ...+|.++.++|||||.|++++.
T Consensus 166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 34678999995 1 1111 122111 26789999999999999999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=95.50 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCeeecCCCCCCCccc---HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHH
Q 006633 185 GDRFSFPGGGTMFPRG---ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFA 259 (637)
Q Consensus 185 g~~~~Fpg~g~~f~~g---~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A 259 (637)
+-.|.++ .+.+|... .+.+++.+.+.+....+ .+|||+|||+|.++..|++.. ++++|+++..+..+..+ +
T Consensus 253 g~~~~~~-~~~f~q~n~~~~e~l~~~~~~~l~~~~~--~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n-~ 328 (433)
T 1uwv_A 253 GLRLTFS-PRDFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN-A 328 (433)
T ss_dssp TEEEECC-SSSCCCSBHHHHHHHHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHH-H
T ss_pred CEEEEEC-cccccccCHHHHHHHHHHHHHhhcCCCC--CEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-H
Confidence 3334443 33455432 44455666666654443 489999999999999999875 45555544333322222 2
Q ss_pred HHcCC-CeEEEEecccc----CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 260 LERGV-PALIGVMASIR----LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 260 ~erg~-~~~~~~~d~~~----Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+. ++.+..+|... +++++++||+|++..-. . ....+++.+. .++|++.++++..
T Consensus 329 ~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr---~--g~~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR---A--GAAGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp HHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT---T--CCHHHHHHHH-HHCCSEEEEEESC
T ss_pred HHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCC---c--cHHHHHHHHH-hcCCCeEEEEECC
Confidence 23343 58888888766 44667889999997532 2 1234555554 3799999998853
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-07 Score=90.05 Aligned_cols=141 Identities=10% Similarity=0.061 Sum_probs=79.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCC---CCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMST---YPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~---yp~t~Dl~H~~ 547 (637)
...+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++ |+ +-+++ |+.+.+.. .+.+||+|-++
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 367999999999999999987610 13556666666666666554 22 22222 44442222 23799999986
Q ss_pred cccccCC-------------CCcC----------HHHHHHHHhhcccCCcE-EEEEeCHHHHHHHHHHHh--cCCceeEE
Q 006633 548 SIFSLYK-------------DRCE----------MEDVLLEMDRILRPEGS-VIIRDDVDILVKIKSITD--GMEWEGRI 601 (637)
Q Consensus 548 ~lfs~~~-------------~~c~----------~~~~l~e~dRiLrPgG~-~i~~d~~~~~~~~~~~~~--~~~W~~~~ 601 (637)
--|.... .... +..++-++-|+|||||+ +++.-.......+.+++. ...|....
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEE
Confidence 5543211 0111 16788999999999999 777655555666777776 55554322
Q ss_pred eccCCCCCCcceEEEEEec
Q 006633 602 ADHENGPRQREKILFANKK 620 (637)
Q Consensus 602 ~~~e~~~~~~~~~l~~~K~ 620 (637)
.-.+ ..+.+++++++|.
T Consensus 189 ~~~~--~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 189 KVKD--LRGIDRVIAVTRE 205 (215)
T ss_dssp EEEC--TTSCEEEEEEEEC
T ss_pred EEEe--cCCCEEEEEEEEc
Confidence 1111 1245789998874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=89.12 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=87.3
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeE
Q 006633 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PAL 267 (637)
Q Consensus 193 ~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~ 267 (637)
...+|-.+...-..++.+++ .++ .+|||+|||+|.++..+++++ |+++|++|..+... .+.+..+++ .+.
T Consensus 104 ~k~~f~~~~~~er~ri~~~~--~~g--~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~-~~N~~~N~v~~~v~ 178 (278)
T 3k6r_A 104 AKIMFSPANVKERVRMAKVA--KPD--ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL-VENIHLNKVEDRMS 178 (278)
T ss_dssp TTSCCCGGGHHHHHHHHHHC--CTT--CEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHH-HHHHHHTTCTTTEE
T ss_pred cceEEcCCcHHHHHHHHHhc--CCC--CEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHH-HHHHHHcCCCCcEE
Confidence 34455455544445566554 343 499999999999999988774 45555544322222 122333444 367
Q ss_pred EEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhH
Q 006633 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGI 347 (637)
Q Consensus 268 ~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~i 347 (637)
+..+|...++ +.+.||.|+.+.- . ....++..+.++|||||.+.+...... ........+.+
T Consensus 179 ~~~~D~~~~~-~~~~~D~Vi~~~p-----~-~~~~~l~~a~~~lk~gG~ih~~~~~~e-----------~~~~~~~~e~i 240 (278)
T 3k6r_A 179 AYNMDNRDFP-GENIADRILMGYV-----V-RTHEFIPKALSIAKDGAIIHYHNTVPE-----------KLMPREPFETF 240 (278)
T ss_dssp EECSCTTTCC-CCSCEEEEEECCC-----S-SGGGGHHHHHHHEEEEEEEEEEEEEEG-----------GGTTTTTHHHH
T ss_pred EEeCcHHHhc-cccCCCEEEECCC-----C-cHHHHHHHHHHHcCCCCEEEEEeeecc-----------cccchhHHHHH
Confidence 7778877765 4578999997642 1 345688889999999999877532100 00011123456
Q ss_pred HHHHHHhceee
Q 006633 348 ETIARSLCWKK 358 (637)
Q Consensus 348 e~la~~l~w~~ 358 (637)
+++++..+++.
T Consensus 241 ~~~~~~~g~~v 251 (278)
T 3k6r_A 241 KRITKEYGYDV 251 (278)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHcCCcE
Confidence 67777887764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.1e-07 Score=95.71 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=69.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCC----CCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY----PSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpf----pd~sFDlV~~s~~ 291 (637)
+.+|||+|||+|.++..+++. .++++|+++..+..+..+ +..++. ++.+..+|...... .+++||+|++..-
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n-~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEEN-ARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 458999999999999999886 456666655443333322 223343 47888888655421 2578999998643
Q ss_pred cccCCc-------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQ-------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~-------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...... .....++.++.++|+|||.++++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 212111 0456789999999999999999875
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-07 Score=92.03 Aligned_cols=126 Identities=15% Similarity=0.105 Sum_probs=89.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++.++++.+. +|+.+|.++..+..+.++ |+ +.+++ |+.+ .+| ..||+|.++.++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~---~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVANLYA 194 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEECCH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh---cCcCCCCCEEEECCcH
Confidence 46899999999999999988765 677778877888887775 43 22222 2222 243 789999986544
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
. .+..++-++-|+|||||++++++. ......+.+.++...++......+ +.-..++++|
T Consensus 195 ~------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~l~~~k 254 (254)
T 2nxc_A 195 E------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp H------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred H------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc----CCeEEEEEEC
Confidence 3 257899999999999999999853 345677888888877877644333 1234555554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=86.92 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=83.0
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpf 278 (637)
++.+.++++ ++ .+|||||||+|.++..+++.+ ++++|+++..+..+..+ +...++ .+.+...|... ++
T Consensus 6 L~~l~~~v~--~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N-~~~~gl~~~i~~~~~d~l~-~l 79 (225)
T 3kr9_A 6 LELVASFVS--QG--AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKN-VEAHGLKEKIQVRLANGLA-AF 79 (225)
T ss_dssp HHHHHTTSC--TT--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGG-GC
T ss_pred HHHHHHhCC--CC--CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEEECchhh-hc
Confidence 344555543 33 489999999999999999874 56676655444433332 223454 37787777532 23
Q ss_pred CCC-CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhcee
Q 006633 279 PSR-AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 279 pd~-sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
+.+ .||+|+.....- . -...++.+....|+|+|+|++... . ....+.......+|.
T Consensus 80 ~~~~~~D~IviaG~Gg--~--~i~~Il~~~~~~L~~~~~lVlq~~------------~-------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 80 EETDQVSVITIAGMGG--R--LIARILEEGLGKLANVERLILQPN------------N-------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp CGGGCCCEEEEEEECH--H--HHHHHHHHTGGGCTTCCEEEEEES------------S-------CHHHHHHHHHHTTEE
T ss_pred ccCcCCCEEEEcCCCh--H--HHHHHHHHHHHHhCCCCEEEEECC------------C-------CHHHHHHHHHHCCCE
Confidence 333 699998755321 1 246789999999999999999743 0 123466677778887
Q ss_pred eecc
Q 006633 358 KLIQ 361 (637)
Q Consensus 358 ~v~~ 361 (637)
.+.+
T Consensus 137 i~~e 140 (225)
T 3kr9_A 137 IVAE 140 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=92.95 Aligned_cols=103 Identities=9% Similarity=-0.015 Sum_probs=70.5
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccCCC----CCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLPY----PSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~Lpf----pd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..+++.+ ++++|+++..+..+..+ +..++. ++.+..+|...... .+.+||+|++
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 3499999999999999999874 45555544333322222 223455 57888888655421 1468999999
Q ss_pred ccccc--------cCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 289 SRCLI--------PWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 289 s~~L~--------h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
..-.. .... ....++.++.++|+|||.++++..+
T Consensus 300 dpP~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACR-GYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp CCSSTTTCSSSSSCCCT-HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCCChhHHHHHHH-HHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 64221 1112 5678899999999999999998753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.3e-07 Score=90.15 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~ 295 (637)
+...+|||||||+|.++..+... .+.++|+++..+...... +...+.+..+.+.|....+++. +||+|++.-+++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~-~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPF-AREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHH-HHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHH-HHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHh
Confidence 34569999999999999987732 566666655433322222 2234677888888888777664 89999999888777
Q ss_pred CcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 296 GQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 296 ~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
..+.....+ ++...|+++|.++-.
T Consensus 182 E~q~~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQAGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred hhhchhhHH-HHHHHhcCCCEEEEc
Confidence 653444444 889999999877654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-07 Score=98.58 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=72.1
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCCC-
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPY- 278 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lpf- 278 (637)
+..++......+.+|||+|||+|..+..|++. +..++.+ |+++.+++.+++ .+. ++.+...|...++.
T Consensus 107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~av---Dis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~ 183 (479)
T 2frx_A 107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILAN---EFSASRVKVLHANISRCGISNVALTHFDGRVFGAA 183 (479)
T ss_dssp HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEE---CSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH
T ss_pred HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh
Confidence 34445444113449999999999999999875 2333333 444444444433 244 57788888777653
Q ss_pred CCCCeeEEEec------cccc-------cCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCS------RCLI-------PWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s------~~L~-------h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++||.|++. .++. +|..+ ....+|.++.++|||||.|++++.
T Consensus 184 ~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 46789999972 1111 12210 134689999999999999999865
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.9e-07 Score=88.75 Aligned_cols=99 Identities=20% Similarity=0.315 Sum_probs=71.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-----ccchhh-ccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-----LIGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-----l~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++..|.+..- +|+.+|.++.++..+.++- -+..++ |..+ + ++| .+||+|.++.++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-L-SFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-C-CSCTTCEEEEEEESCG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-C-CCCCCcEEEEEEcCch
Confidence 56899999999999999988754 6777777777888877652 122222 2221 2 244 799999998774
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
..+. .-+...+|-++-|+|||||.+++.+..
T Consensus 114 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4332 234578999999999999999998653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-07 Score=93.95 Aligned_cols=122 Identities=9% Similarity=0.053 Sum_probs=78.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc------------------ccc-------------
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG------------------LIG------------- 525 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg------------------l~~------------- 525 (637)
...+|||+|||+|.++..+...+. -+|+.+|.++.++..+.++- +-|
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 357899999999996544444322 26777888888888766520 111
Q ss_pred -----hhh-ccccccC----CCC-CccceeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEEeCH-----------
Q 006633 526 -----TYQ-NWCEAMS----TYP-RTYDLIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIRDDV----------- 582 (637)
Q Consensus 526 -----~~~-~wce~~~----~yp-~t~Dl~H~~~lfs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d~~----------- 582 (637)
+.+ |..+..+ .+| .+||+|-+..+|...... -+...+|-|+-|+|||||++++.+..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 000 3222121 243 679999998877653322 35679999999999999999996311
Q ss_pred -----HHHHHHHHHHhcCCceeE
Q 006633 583 -----DILVKIKSITDGMEWEGR 600 (637)
Q Consensus 583 -----~~~~~~~~~~~~~~W~~~ 600 (637)
-....+.++++.-.++..
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEE
Confidence 134567777776666654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=89.05 Aligned_cols=124 Identities=17% Similarity=0.111 Sum_probs=80.9
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~ 290 (637)
..+|||||||+|-++..++.. .+.++|+++ .++++++ ..+++..+.+.|...-+ +.+.||+|++.-
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~-----~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lk 206 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDA-----RLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLK 206 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBH-----HHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETT
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCH-----HHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHH
Confidence 559999999999999888766 456666644 4444443 34777888877765554 567899999999
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
+++++.++.....+ ++...|+|+|.++-... ..--. +++.....-...++..+...+|
T Consensus 207 ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~-ksl~G------rs~gm~~~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 207 TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT-KSLGQ------RSKGMFQNYSQSFESQARERSC 264 (281)
T ss_dssp CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC-C-------------CHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc-hhhcC------CCcchhhHHHHHHHHHHHhcCC
Confidence 99777653344555 99999999998876521 00001 1222222223456777777777
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-07 Score=88.34 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=68.3
Q ss_pred ceeEeeecccchhhh-hhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFA-AALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfa-a~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||.|.+. ..+...+. +|+.+|.++.++..+.++ |. +...+ |. +.+ ++| .+||+|.+.++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDI-RKL-PFKDESMSFVYSYGT 98 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT-TSC-CSCTTCEEEEEECSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECch-hhC-CCCCCceeEEEEcCh
Confidence 568999999999984 44555543 667778877888887765 22 22222 22 222 244 89999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+.... .-+...+|-++-|+|||||.+++.+
T Consensus 99 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 99 IFHMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 2456799999999999999999975
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-06 Score=96.37 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhh-----------------cCCEEEEcCccccHHHHHHHHHHcCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----------------RNILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~-----------------~~v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
+..++.+.+++.... +.+|||.|||+|.++..+++ ..+.++++++.....+..+.. ..+.
T Consensus 157 ~~v~~~mv~~l~~~~--~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~-l~g~ 233 (445)
T 2okc_A 157 RPLIQAMVDCINPQM--GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY-LHGI 233 (445)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHhCCCC--CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH-HhCC
Confidence 456667777775444 34899999999999887764 257777776544433333222 2344
Q ss_pred ---CeEEEEeccccCCCCCCCeeEEEeccccccCCcCC---------------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 265 ---PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYA---------------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 265 ---~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d---------------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+..+|+...+.. ..||+|+++.-+.+....+ ...+++.+.++|||||.+++..|
T Consensus 234 ~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 234 GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 566777787666644 4899999987664432101 13789999999999999999876
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-07 Score=93.81 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=84.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-c-------------------cchhhccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L-------------------IGTYQNWCEAMSTY 537 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l-------------------~~~~~~wce~~~~y 537 (637)
..+|||+|||.|.++.+|++++. +|+.+|.++.++..+.++- + -.-+.-.|..+...
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 46899999999999999999875 6888899989999987653 1 01111123333333
Q ss_pred C----CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE-EeC-----------HHHHHHHHHHHhcCCceeEE
Q 006633 538 P----RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII-RDD-----------VDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 538 p----~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~-----------~~~~~~~~~~~~~~~W~~~~ 601 (637)
| .+||+|-+.++|.... ..+.+.++-||-|+|||||.+++ +-. .-..+.+.+++.. .|++..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 2 7899999888776553 34567899999999999999964 311 0123567777765 377764
Q ss_pred ec
Q 006633 602 AD 603 (637)
Q Consensus 602 ~~ 603 (637)
..
T Consensus 224 ~~ 225 (252)
T 2gb4_A 224 LE 225 (252)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-07 Score=96.01 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=69.4
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc---------cchhh-ccccccCCCCCccceeeec-c
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---------IGTYQ-NWCEAMSTYPRTYDLIHAD-S 548 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---------~~~~~-~wce~~~~yp~t~Dl~H~~-~ 548 (637)
+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++-- +-++. |.. .++ ++.+||+|.+. .
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFA-LDKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCC-CSCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCC-cCCCcCEEEECCc
Confidence 899999999999999998863 56777877788888877621 22222 222 222 36999998863 4
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.. .+.-++..+|-++-|+|||||.++|..
T Consensus 160 ~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 160 SINE-LDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-CCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4432 233346899999999999999999974
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=94.62 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=70.3
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCC----CCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY----PSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpf----pd~sFDlV~~s 289 (637)
+.+|||+|||+|.++..+++.+ ++++|+++..+..+..+ +..++. ++.+..+|...+.. .+++||+|++.
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n-~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 4599999999999999999873 55566655433333222 223344 57888888655421 25789999996
Q ss_pred cccccCCc-------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQ-------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~-------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-...... .+...++.++.++|+|||.++++..
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 43211110 1456789999999999999999865
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.4e-07 Score=97.26 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=71.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccCCCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~~yp~t~Dl~H~~~ 548 (637)
....+|||+|||+|.++..|++.+. -.|+.+|.+ +++..+.++ |+ |-+++.=.+.+ .+|..||+|.++.
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Iv~~~ 137 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-SLPEKVDVIISEW 137 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-CCSSCEEEEEECC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-CcCCcceEEEEcC
Confidence 3467899999999999999988754 256677777 777776554 43 33333111222 2458999999966
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+.......-.++.++-+++|+|+|||.+|+.
T Consensus 138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 5544444456788999999999999999885
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-07 Score=97.18 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=70.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cc----------hh-hccc------cccC-CCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IG----------TY-QNWC------EAMS-TYP 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~----------~~-~~wc------e~~~-~yp 538 (637)
..+|||+|||.|+....++..+. -+|+.+|.++.++..+.+|-- .+ .| ...+ +.+. .+|
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 56899999999987766665554 367888999999999988731 11 01 1111 2222 355
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 539 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 539 -~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
.+||+|-|..++-..-+.-....+|-|+-|+|||||++|++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999988654421111124689999999999999999998643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.3e-07 Score=89.39 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpf 278 (637)
...++.+.+.+...++ .+|||||||+|.++..|++++..++.+ |+++.+++.++++. .++.+..+|...+++
T Consensus 16 ~~~~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~ 90 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEH--DNIFEIGSGKGHFTLELVQRCNFVTAI---EIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 90 (244)
T ss_dssp HHHHHHHHTTCCCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEE---CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhCCCCCC--CEEEEEeCCchHHHHHHHHcCCeEEEE---ECCHHHHHHHHHhhccCCCeEEEEChHHhCCc
Confidence 4456667776655444 499999999999999999986555555 56667777776553 368889999999988
Q ss_pred CC-CCeeEEEeccc
Q 006633 279 PS-RAFDMAHCSRC 291 (637)
Q Consensus 279 pd-~sFDlV~~s~~ 291 (637)
++ ..| .|+++.-
T Consensus 91 ~~~~~~-~vv~nlP 103 (244)
T 1qam_A 91 PKNQSY-KIFGNIP 103 (244)
T ss_dssp CSSCCC-EEEEECC
T ss_pred ccCCCe-EEEEeCC
Confidence 74 456 4666543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=95.78 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=70.5
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC-CCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPS 280 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp-fpd 280 (637)
+..++...++. +|||+|||+|..+..|++. .++++|+++..+.....+ +...+. ++.+...|...++ +.+
T Consensus 97 ~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n-~~r~g~~nv~v~~~Da~~l~~~~~ 173 (456)
T 3m4x_A 97 VGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSEN-IERWGVSNAIVTNHAPAELVPHFS 173 (456)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH-HHHHTCSSEEEECCCHHHHHHHHT
T ss_pred HHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEeCCHHHhhhhcc
Confidence 44455555544 9999999999999998875 245555544332222222 222344 4777777776654 345
Q ss_pred CCeeEEEeccc------cc-------cCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRC------LI-------PWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~------L~-------h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|++..- +. .|..+ ....+|.++.++|||||.|++++-
T Consensus 174 ~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 78999997321 10 11110 122689999999999999999864
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.5e-07 Score=91.19 Aligned_cols=136 Identities=12% Similarity=0.204 Sum_probs=89.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.+|++. +- .+|+.+|.++.++.++.++ |+ +-+++ |+.+.+. +.+||+|-++--
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CCEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 458999999999999998743 32 2567778877888887765 44 33333 4443321 478999998733
Q ss_pred cccC------------CCC----------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCC
Q 006633 550 FSLY------------KDR----------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 607 (637)
Q Consensus 550 fs~~------------~~~----------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 607 (637)
+... ..+ -.+..++-++-|+|+|||++++.........++++++...|+......+
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d-- 263 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD-- 263 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC--
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec--
Confidence 3211 111 1346788999999999999999866656667777777666653321111
Q ss_pred CCCcceEEEEEe
Q 006633 608 PRQREKILFANK 619 (637)
Q Consensus 608 ~~~~~~~l~~~K 619 (637)
-.+.+++++++|
T Consensus 264 ~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 YGDNERVTLGRY 275 (276)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCCcEEEEEE
Confidence 124678888875
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.1e-07 Score=93.12 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=82.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-cccccc----CCCCCccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAM----STYPRTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~----~~yp~t~Dl~H~~~lf 550 (637)
....+|||+|||+|.++..|++++- .|+.+|.++.++..+.++---..++ +|.+.- ...+.+||+|-++.++
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l 120 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLI 120 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCG
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhh
Confidence 3467899999999999999998754 6777888889999998874211122 333211 1234789999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----HHHHHHHHHHhcCCceeEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----DILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~~~~~~~~~~~~~~W~~~~ 601 (637)
..+.. -+...+|.+|-|+| |||.++++-.. .-...++.....-.|....
T Consensus 121 ~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~ 173 (261)
T 3iv6_A 121 NRFTT-EEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFF 173 (261)
T ss_dssp GGSCH-HHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHE
T ss_pred HhCCH-HHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeee
Confidence 65432 24568999999999 99999998432 1233444445555554433
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-07 Score=91.91 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=71.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCC------CC--Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMST------YP--RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~------yp--~t~Dl~H~~~l 549 (637)
..+|||+|||+|.++..|++..- +|+.+|.++.++..+.++--..-+.-.+..+.. ++ ..||+|.+..+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 56799999999999999987643 667778887888888877421111111122222 22 24999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+.... .-+...+|-++-|+|||||+++|.+
T Consensus 134 ~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 134 FHHIP-VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp STTSC-GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 77653 2356899999999999999998875
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=91.69 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+|||+|||+|.++..|++.+ ++++|+++..+..+..+ +..++..+.+..+|...+... +||+|++......
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n-~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g-- 365 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRN-VEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAG-- 365 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTC--
T ss_pred CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccc--
Confidence 3489999999999999999875 55555554433333322 223344578888888776432 8999999653211
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....+++.+ +.|+|||.++++..
T Consensus 366 --~~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 366 --LHPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp --SCHHHHHHH-HHHCCSEEEEEESC
T ss_pred --hHHHHHHHH-HhcCCCcEEEEECC
Confidence 223455555 45999999999853
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-07 Score=99.26 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=73.7
Q ss_pred CceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh---------c-c----cchhhccccccC-----
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER---------G-L----IGTYQNWCEAMS----- 535 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR---------g-l----~~~~~~wce~~~----- 535 (637)
...+|||+|||.|.++..|++. +- ..|+.+|.++.++..+.++ | + +-.++.-.+.+.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3578999999999999888764 21 2566677777899988887 5 2 223321112221
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++| .+||+|+++.+|.... +.+.+|-|+-|+|||||++++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 555 7999999999888655 36899999999999999999975
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-07 Score=95.68 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L 276 (637)
+..++.+.+++.... ..+|||+|||+|.++..++++ .+.++|+++..+. .| ..+.+...|....
T Consensus 25 ~~l~~~~~~~~~~~~--~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~-----~a----~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----LP----PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHHCCCCT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----CC----TTEEEEESCGGGC
T ss_pred HHHHHHHHHhhccCC--CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH-----hC----CCCcEEeCChhhc
Confidence 456667777765422 349999999999999999874 4677777665443 22 3567778887765
Q ss_pred CCCCCCeeEEEeccccccCCc---------CC------------------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQ---------YA------------------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~---------~d------------------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ +.+.||+|+++.-+..... ++ ...+++.+.++|+|||.+++..|
T Consensus 94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 4 3578999999754422111 01 12568899999999999999987
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-06 Score=89.49 Aligned_cols=93 Identities=9% Similarity=-0.001 Sum_probs=65.9
Q ss_pred CCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
+.+|||+|||+|.++.. ++.. ++++|+++..+..+..+ +..++. ++.+..+|..... ++||+|++....
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n-~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKN-IKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence 34999999999999999 8753 45555544333332222 223343 5888888887765 789999986421
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....++.++.++|+|||.+++...
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 234689999999999999999753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=85.90 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=60.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchh----HHHHhhcccc-hhhccccc--cCCCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTL----GVIYERGLIG-TYQNWCEA--MSTYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l----~~~~eRgl~~-~~~~wce~--~~~yp~t~Dl~H~~~l 549 (637)
...+|||+|||+|.++..|++.-= .-.|..+|.++.++ ..+.++.-+- +..|..+. +..++.+||+|.++.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 134 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI- 134 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence 356899999999999988876410 01455667665543 3333332122 22232221 133458999998862
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. ..-....+|.|+.|+|||||.+++.
T Consensus 135 -~---~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 -A---QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -C---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -c---ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1112345689999999999999997
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.9e-07 Score=86.96 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=80.6
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp-~t~Dl~H~~ 547 (637)
-..|||+|||.|.++.+|++. +- .+|+.+|.+..++..+.++ |+ +-+++ |..+ +.. +| .+||.|++.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred CceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence 457999999999999999764 22 3677888888888887765 55 33333 3322 322 44 789988763
Q ss_pred ccccc-------CCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSL-------YKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~ 600 (637)
|+. .+.+-..+.+|-++-|+|+|||.+++. |..+....+.+++....|...
T Consensus 116 --~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 --FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp --SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred --CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 321 112223478999999999999999986 566666666666655566543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=81.38 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=88.6
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCC--
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKD-- 555 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~-- 555 (637)
.+|||+|||+|.++.+|+++. +|+.+|.++.++.. ... +.+++ +..+..++ .+||+|-++..|-....
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~--~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVR--ADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEE--CSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEE--CChhhhcccCCCCEEEECCCCccCCccc
Confidence 489999999999999999986 88888888777776 222 22222 12223444 89999999766653221
Q ss_pred ----CcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEE
Q 006633 556 ----RCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618 (637)
Q Consensus 556 ----~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 618 (637)
..+...++.++-|.| |||.+++.. .......+.++++...|+.......... .|++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 123346788888888 999999975 3456778888888888988755444333 45665554
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.6e-08 Score=98.48 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=72.2
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc---------------------------------
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG--------------------------------- 522 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg--------------------------------- 522 (637)
...+|||+|||.|.++..|++. +- ..|+.+|.++.++..+.++-
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 3578999999999999999875 22 26677787777888887651
Q ss_pred -------------------------------ccchhh-ccccc---cCC-CCCccceeeeccccccCC---CCcCHHHHH
Q 006633 523 -------------------------------LIGTYQ-NWCEA---MST-YPRTYDLIHADSIFSLYK---DRCEMEDVL 563 (637)
Q Consensus 523 -------------------------------l~~~~~-~wce~---~~~-yp~t~Dl~H~~~lfs~~~---~~c~~~~~l 563 (637)
-+..++ |+... +.. .+.+||+|.|.+++...+ ....+..+|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 111111 32211 112 348999999988764322 445678999
Q ss_pred HHHhhcccCCcEEEEEe
Q 006633 564 LEMDRILRPEGSVIIRD 580 (637)
Q Consensus 564 ~e~dRiLrPgG~~i~~d 580 (637)
-++-|+|||||++||..
T Consensus 204 ~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 99999999999999963
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=86.23 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=86.5
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----ccc---chhh-ccccccCCCC--Ccccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYP--RTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~-~wce~~~~yp--~t~Dl~ 544 (637)
.++|||+|||.|.++.+|++. .. .|+.+|.++.++..+.++ |+- -++. |..+.+...+ .+||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 579999999999999999875 22 455667666788877766 552 2222 3333344444 499999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCceeEEeccCCCC
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKS----ITDGMEWEGRIADHENGP 608 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~~~ 608 (637)
.+++- .-..+.+|-++-|+|||||++++.+-. .....+++ +...-+|...+...- |.
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~ 213 (248)
T 3tfw_A 141 FIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GT 213 (248)
T ss_dssp EECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-ST
T ss_pred EECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CC
Confidence 88542 224567899999999999999986421 12223333 344556776654211 21
Q ss_pred CCcceEEEEEec
Q 006633 609 RQREKILFANKK 620 (637)
Q Consensus 609 ~~~~~~l~~~K~ 620 (637)
...+.+.+++|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 235889999986
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-06 Score=100.55 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=71.8
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEecccc-CCCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LPYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~-Lpfpd~sFDlV~~s~~ 291 (637)
+.+|||+|||+|.++..++..+ |+++|+++..+..+..+.+ .+++ .+.+..+|... ++...++||+|++..-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~-~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR-LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 3499999999999999998764 5666665544443333322 3343 47888888765 4445688999998642
Q ss_pred cc----------cCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 292 LI----------PWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 292 L~----------h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.. +... +...++.++.++|+|||+|+++...
T Consensus 619 ~f~~~~~~~~~~~~~~-~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQR-DHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHH-HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHH-HHHHHHHHHHHhcCCCcEEEEEECC
Confidence 11 1111 4567899999999999999998753
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.7e-08 Score=98.97 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=71.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPS 280 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpfpd 280 (637)
.++.+.+.+...++ .+|||+|||+|.++..|++++..++++ |+++.+++.++++ ..++.+..+|...+++++
T Consensus 17 ~~~~i~~~~~~~~~--~~VLDiG~G~G~~~~~l~~~~~~v~~i---d~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 17 VLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKISKQVTSI---ELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEEES---SSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHhcCCCCC--CEEEEEeCCCCHHHHHHHHhCCeEEEE---ECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 34566666655444 489999999999999999886544444 4444444444333 235778888888888774
Q ss_pred -CCeeEEEeccccccCCc----------CCHHHHH----HHHHhcccCCeEEEEEe
Q 006633 281 -RAFDMAHCSRCLIPWGQ----------YADGLYL----IEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 -~sFDlV~~s~~L~h~~~----------~d~~~~L----~ei~RvLKPGG~Lvls~ 321 (637)
++| .|+++.-+ +... .....++ +.+.|+|+|||.+.+..
T Consensus 92 ~~~f-~vv~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 92 KQRY-KIVGNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSEE-EEEEECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCCc-EEEEeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 67776432 1110 0222333 66888899988876653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=88.15 Aligned_cols=110 Identities=11% Similarity=0.149 Sum_probs=68.3
Q ss_pred HHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-C--eEEEEeccCCCCcc------hhHHHHhh----cc---cchh
Q 006633 464 YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-P--LWVMNTVPVEAKIN------TLGVIYER----GL---IGTY 527 (637)
Q Consensus 464 ~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~--v~~mnv~~~~~~~~------~l~~~~eR----gl---~~~~ 527 (637)
.+..++..+.. ....+|||+|||.|.++..|++. + . +|+.+|.++. ++..+.++ |+ +.+.
T Consensus 31 ~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~g~~~---~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~ 106 (275)
T 3bkx_A 31 HRLAIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSG---HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH 106 (275)
T ss_dssp HHHHHHHHHTC-CTTCEEEEESCTTSHHHHHHHHHHCTTC---EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE
T ss_pred HHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE
Confidence 34444443333 34678999999999999999865 1 3 3444444433 67766554 33 2222
Q ss_pred h-c-cccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 528 Q-N-WCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 528 ~-~-wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+ | ....-.++| .+||+|++.+++....+ .+.++-.+.++|+|||++++.+
T Consensus 107 ~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 107 FNTNLSDDLGPIADQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CSCCTTTCCGGGTTCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred ECChhhhccCCCCCCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 2 2 211222344 89999999888865543 3555555566777799999974
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.9e-07 Score=94.95 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=67.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccCCCC-Cccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
...+|||+|||+|.++..|++.+. -.|+.+|.+ .++..+.++ |+ +-+++.=.+.+ .+| ..||+|-+..
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEW 139 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECC
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChH-HHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcC
Confidence 356899999999999999987753 245566666 366666543 43 33333111222 355 8999999877
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVI 577 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i 577 (637)
+.......-.++.+|-++.|+|||||.++
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 53333344467789999999999999998
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=89.69 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=82.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCC--CCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY--PRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~y--p~t~Dl~H~~~lfs 551 (637)
..+|||+|||+|+|+.+|++..-- .|+.+|.++.++..+.++ |+-..+.-.+.....+ +.+||+|.++..+
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence 568999999999999999875431 466678777788777664 5532122222222223 5799999885443
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------HHHHHHHHHHHhcCCceeEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------VDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------~~~~~~~~~~~~~~~W~~~~ 601 (637)
....++-++-|+|||||.+++.+. .+....+.+.++...|++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 235788899999999999999643 24678888899999998876
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-07 Score=92.92 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=72.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCC--CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY--PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~y--p~t~Dl~H~~ 547 (637)
..+|||+|||.|.++.+|++.+. .+|+.+|.++.++..+.++ |+ +.+.+ |. +.+ ++ +.+||+|.+.
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGR-HMDLGKEFDVISSQ 140 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTS-CCCCSSCEEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc-ccc-ccCCCCCcCEEEEC
Confidence 56899999999999999887653 2566777777888887776 22 22222 22 222 23 4799999998
Q ss_pred cccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 548 SIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 548 ~lfs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+++... .+.-+...+|-++-|+|||||.+++....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 776431 33445678999999999999999998643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-06 Score=84.02 Aligned_cols=122 Identities=12% Similarity=0.150 Sum_probs=81.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp-~t~Dl~H~~~ 548 (637)
...|||+|||.|.++.+|++..- -.+|+.+|.++.++..+.++ |+ +-+++ |+.+ +.. +| .+||+|.++.
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 45799999999999999876510 13567777777788877664 44 23333 3332 332 44 7899999863
Q ss_pred ccccC-----CCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCceeEE
Q 006633 549 IFSLY-----KDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 549 lfs~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
..... +.+-..+.+|-++-|+|+|||.+++. |..+....+.+++....|....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 21111 11123468999999999999999996 4556667777776666676653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.8e-07 Score=95.91 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=71.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc---cchhhccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL---IGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++..|++.+. ..|+.+|.+ .++..+.+ .|+ +.+++.=.+.+ .+| .+||+|.++.+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWM 142 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCC
T ss_pred CCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccc
Confidence 57899999999999999988754 355566666 46666554 354 23333111222 456 89999999777
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.......-.++.+|.+++|+|||||.+|..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 665555667889999999999999999753
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=85.57 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=83.1
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC----Cccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP----RTYD 542 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp----~t~D 542 (637)
..+|||+|||+|.++.+|++. +. .|+.+|.++.++..+.++ |+ +.+++ |..+.+..++ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 568999999999999999876 32 456667666777776654 55 22222 3223222232 5799
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKS----ITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~ 606 (637)
+|.+++..+ ..+.+|-++-|+|||||.+++.+.. .....+++ +...-+|...+...-
T Consensus 136 ~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~- 208 (223)
T 3duw_A 136 FIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV- 208 (223)
T ss_dssp EEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE-
T ss_pred EEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc-
Confidence 998865422 4468899999999999999986321 11222333 334456666654331
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
+..+.+.+++++|+
T Consensus 209 ~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 209 GSKGYDGFIMAVVK 222 (223)
T ss_dssp ETTEEEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 11235678888764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-06 Score=91.47 Aligned_cols=99 Identities=14% Similarity=0.288 Sum_probs=69.2
Q ss_pred CceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhcccc-ccC---CCCCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCE-AMS---TYPRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce-~~~---~yp~t~Dl~H~ 546 (637)
..++|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.--+. .+. ++|.+||+|.+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence 4689999999999999999763 33 3444455 3677777665 44221111112 233 47889999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..++..+.+. +...+|-++-|+|||||.++|.|
T Consensus 255 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 255 SQFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp ESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred echhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 8887655432 34578999999999999999975
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.9e-07 Score=89.84 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=76.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCC-CCccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTY-PRTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~y-p~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||.|.++.+|++.+. .|+.+|.++.++..+.++.- +.+++ |+.+.++.- +.+||+|.+.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence 46899999999999999998853 67777888889999988832 22222 443333322 4799999984
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCcee
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEG 599 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~ 599 (637)
-+...+|-++.|+|||||.++..........+.+.+....+..
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 2456889999999999999994432222334445444444443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-06 Score=84.17 Aligned_cols=130 Identities=12% Similarity=0.224 Sum_probs=84.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccC-CCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMS-TYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~-~yp~t~Dl~H~~~ 548 (637)
..+|||+|||.|.++.+|++..- ...|+.+|.++.++..+.++ |+ +-+++ |..+.+. ..+.+||+|.++.
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 56899999999999999988310 23566667776777777654 43 33333 3333333 3468999998753
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------------HHHHHHHHH----HHhcCCceeEEeccCCC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-----------------VDILVKIKS----ITDGMEWEGRIADHENG 607 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------------~~~~~~~~~----~~~~~~W~~~~~~~e~~ 607 (637)
- .-..+.+|-++-|+|||||.+++.+- ......+++ +.+.-++...+...
T Consensus 151 ~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 221 (232)
T 3ntv_A 151 A------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI--- 221 (232)
T ss_dssp T------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS---
T ss_pred c------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc---
Confidence 2 33467899999999999999999321 112233333 34455677666532
Q ss_pred CCCcceEEEEEec
Q 006633 608 PRQREKILFANKK 620 (637)
Q Consensus 608 ~~~~~~~l~~~K~ 620 (637)
.+.+.+++|+
T Consensus 222 ---~dG~~i~~k~ 231 (232)
T 3ntv_A 222 ---DDGLAISIKG 231 (232)
T ss_dssp ---TTCEEEEEEC
T ss_pred ---CCceEEEEEC
Confidence 3678888874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=9.6e-07 Score=88.44 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred eeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccc--cCCCCC-ccceeee
Q 006633 479 RNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEA--MSTYPR-TYDLIHA 546 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~--~~~yp~-t~Dl~H~ 546 (637)
.+|||+|||+|..++.|++. +- -.|+.+|.++.++..+. ++ +-+++ |..+. +...+. .||+|++
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~--~~V~gvD~s~~~l~~a~--~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGID--CQVIGIDRDLSRCQIPA--SDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCC--CEEEEEESCCTTCCCCG--GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCC--CEEEEEeCChHHHHHHh--ccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 58999999999999998763 11 13344444444544443 33 22222 32221 222233 7999998
Q ss_pred ccccccCCCCcCHHHHHHHHhh-cccCCcEEEEEeCH-----HHHHHHHHHHhcC--CceeE
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDR-ILRPEGSVIIRDDV-----DILVKIKSITDGM--EWEGR 600 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dR-iLrPgG~~i~~d~~-----~~~~~~~~~~~~~--~W~~~ 600 (637)
++. + -+.+.+|.|+.| +|||||++++.|.. .....+.++++.. .++..
T Consensus 159 d~~----~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 159 DNA----H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp ESS----C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred CCc----h--HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 654 1 267889999998 99999999997631 1123667777766 45543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.5e-07 Score=87.81 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=75.7
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CC-Cccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YP-RTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp-~t~Dl~H~ 546 (637)
.-..|||+|||.|.++.+|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |-.+-+.. +| .+||+|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 3568999999999999999754 21 2566778777888776654 54 22222 22222221 44 89999987
Q ss_pred ccccccCCCC-----cCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006633 547 DSIFSLYKDR-----CEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDG 594 (637)
Q Consensus 547 ~~lfs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 594 (637)
+......+.+ -.-+.+|-++-|+|||||.+++. |.......+.+++..
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 4222112222 22246999999999999999995 556666777766544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6e-06 Score=85.89 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp 279 (637)
...++.+.+.+...++. +|||||||+|.++..|+++ .++++++++..+..+...+. ...++.+..+|+..++++
T Consensus 36 ~~i~~~Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTKDD--VVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc
Confidence 34567777777665544 9999999999999999987 46777777755554443332 235788999999999988
Q ss_pred CCCeeEEEecccc
Q 006633 280 SRAFDMAHCSRCL 292 (637)
Q Consensus 280 d~sFDlV~~s~~L 292 (637)
+.+||.|+++..+
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 8889999988654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-06 Score=89.42 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchHHHHHhhc-------------------CCEEEEcCccccHHHHHHHHHH------------c--CCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-------------------NILAVSFAPRDTHEAQVQFALE------------R--GVP 265 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------------~v~~vdisp~Dls~a~i~~A~e------------r--g~~ 265 (637)
..+|+|+|||+|..+..+... .+..-|+...|.+.-....... . +..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999888776221 2445577777765443322210 0 011
Q ss_pred eEEEEe-ccccCCCCCCCeeEEEeccccccCCcC-------------------------------------CHHHHHHHH
Q 006633 266 ALIGVM-ASIRLPYPSRAFDMAHCSRCLIPWGQY-------------------------------------ADGLYLIEV 307 (637)
Q Consensus 266 ~~~~~~-d~~~Lpfpd~sFDlV~~s~~L~h~~~~-------------------------------------d~~~~L~ei 307 (637)
....+. ....-.||+++||+|+++.+| ||... |...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 233445899999999999999 88652 223468888
Q ss_pred HhcccCCeEEEEEeC
Q 006633 308 DRVLRPGGYWILSGP 322 (637)
Q Consensus 308 ~RvLKPGG~Lvls~p 322 (637)
.|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999865
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=85.07 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred ceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-----Cccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTYD 542 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-----~t~D 542 (637)
..+|||+|||.|.++.+|++. + - ..|+.+|.++.++..+.++ |+ +-+++ |..+.+..++ .+||
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 458999999999999999875 1 1 2455666666777777665 54 22222 3333333333 7899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKS----ITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~ 606 (637)
+|.+++. .-....++-++-|+|||||++++.|-. .....+++ +...-+|+..+...
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 214 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI-- 214 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc--
Confidence 9987542 234678899999999999999997432 11223333 34444676666522
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
.+.+++++|+
T Consensus 215 ----~dG~~~~~k~ 224 (225)
T 3tr6_A 215 ----GDGLTLARKK 224 (225)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCccEEEEEC
Confidence 4568888874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-07 Score=84.66 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=69.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.+|++++. -+|+.+|.++.++..+.++ |+ +-+++ |+.+.+...+..||+|.++..
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 56899999999999999988754 4677778877788877654 33 22222 333333334578999999766
Q ss_pred cccCCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006633 550 FSLYKDRCEMEDVLLEMD--RILRPEGSVIIRDDV 582 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 582 (637)
|.. ...+.++.++. |+|+|||.+++....
T Consensus 110 ~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 110 YAK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 531 23466677776 999999999997543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-06 Score=87.05 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=76.5
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----------cc--cchhh-ccccccCC-CC-Cc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----------GL--IGTYQ-NWCEAMST-YP-RT 540 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----------gl--~~~~~-~wce~~~~-yp-~t 540 (637)
.-..|||+|||+|.++.+|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |.-+.+.. +| .+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~--~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD--TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT--SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3568999999999999999865 22 3677778887888877543 33 22332 22121221 44 89
Q ss_pred cceeeecccccc-------CCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCC
Q 006633 541 YDLIHADSIFSL-------YKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGME 596 (637)
Q Consensus 541 ~Dl~H~~~lfs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~ 596 (637)
||.|.+. |.. .+.|...+.+|-++-|+|||||.+++. |..+....+.+.+....
T Consensus 124 ~D~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 124 LTKMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp EEEEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred eeEEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 9998752 321 122333468999999999999999985 76677777777655543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=81.48 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=83.3
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cchhhccccccCC--CC-Cccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMST--YP-RTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~~wce~~~~--yp-~t~Dl~H~~~lf 550 (637)
+....|||++||. | .+|.++.++..+.+|-- +...+.=.+.+.. +| .+||+|.+..++
T Consensus 11 ~~g~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS----------------S-PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT----------------S-CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc----------------e-eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 4478999999985 1 26777789998888731 2222211123333 44 899999997666
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCceeEEeccCCCCCC----------
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRIADHENGPRQ---------- 610 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~~~~e~~~~~---------- 610 (637)
... ..+.+.+|-|+-|+|||||++++.+... ....+.+.++.-.+ +.+.+....+..
T Consensus 74 ~~~--~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~ 150 (176)
T 2ld4_A 74 GST--TLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREH 150 (176)
T ss_dssp TCC--CCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHH
T ss_pred hhc--ccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHH
Confidence 543 1345899999999999999999975321 14556666555444 433332211111
Q ss_pred --------cceEEEEEecCCCCCC
Q 006633 611 --------REKILFANKKYWTAPA 626 (637)
Q Consensus 611 --------~~~~l~~~K~~w~~~~ 626 (637)
.-.+++++|+-|..++
T Consensus 151 ~g~~~~~~~~~~~~a~Kp~~~~gs 174 (176)
T 2ld4_A 151 LGHESDNLLFVQITGKKPNFEVGS 174 (176)
T ss_dssp TCCCCSSEEEEEEEEECCCSSCCS
T ss_pred hcccCCceEEEEEeccCCcccccC
Confidence 1458899999887654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-06 Score=86.97 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=60.2
Q ss_pred CCEEEEECCCC------chHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEE-EEeccccCCCCCCCeeEE
Q 006633 219 IRTAIDTGCGV------ASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALI-GVMASIRLPYPSRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGt------G~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~-~~~d~~~Lpfpd~sFDlV 286 (637)
+.+|||+|||+ |+ ..++++ .++++|+++. + ..+.+ .++|...++++ ++||+|
T Consensus 64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~~fD~V 127 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-NKWDLI 127 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-SCEEEE
T ss_pred CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-CcccEE
Confidence 44999999954 65 223322 3677888764 1 24566 78888887765 689999
Q ss_pred EeccccccCC----------cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWG----------QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~----------~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|+... ++. .+....+++++.|+|||||.|++...
T Consensus 128 vsn~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 128 ISDMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp EECCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEcCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 997532 211 00235789999999999999999764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.6e-07 Score=92.12 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=72.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-------------cchhhccccccC---CC---C
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-------------IGTYQNWCEAMS---TY---P 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-------------~~~~~~wce~~~---~y---p 538 (637)
..+|||+|||.|.++..|.+.+. -+|+.+|.++.++..+.++-- +..++.=++.+. .+ +
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 56899999999999999987653 366777887788888877621 122221122222 24 2
Q ss_pred CccceeeeccccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 539 RTYDLIHADSIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
.+||+|-+..++... .+.-+...+|-++-|+|||||.++++...
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999987665432 33344578999999999999999998543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=88.93 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=68.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++..+++.+. -.|+.+|.+ .++..+.++ |+ |-+++.-.+.+ .+| ..||+|.+..+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWM 114 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCC
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCc
Confidence 46899999999999999887753 245566666 566665554 54 33333111222 355 89999999776
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
+......-.++.+|.+++|+|+|||.+++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55444556778999999999999999983
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-06 Score=83.71 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--c
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--I 524 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~ 524 (637)
+...++...+.+-.+.... .. ....+|||+|||+|.++.++++.+. -.|+.+|.++.++..+.++ |+ +
T Consensus 22 ~rp~~~~~~~~l~~~l~~~---~~-~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v 95 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTAR---RD-LTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGA 95 (189)
T ss_dssp C---CHHHHHHHHHHHHHH---SC-CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCE
T ss_pred CccCcHHHHHHHHHHHHhc---cC-CCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 4444455555554333211 11 2346899999999999997777653 2466677777788777664 43 2
Q ss_pred chhh-ccccccCCC-CCccceeeeccccccCCCCcCHHHHHHHHhh--cccCCcEEEEEeC
Q 006633 525 GTYQ-NWCEAMSTY-PRTYDLIHADSIFSLYKDRCEMEDVLLEMDR--ILRPEGSVIIRDD 581 (637)
Q Consensus 525 ~~~~-~wce~~~~y-p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dR--iLrPgG~~i~~d~ 581 (637)
-+++ |+.+....+ +.+||+|-++..|... .-+++.++.++-| +|+|||.+++...
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVD--SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 2333 322222224 4899999987665432 1456789999998 9999999999754
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.15 E-value=8.6e-07 Score=87.07 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=84.1
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-----Ccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTY 541 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-----~t~ 541 (637)
.++|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ +-+++ |..+.+..++ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 578999999999999999873 22 455667666788777663 54 33333 4334444454 689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCceeEEecc-CCCCCCcceEE
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADH-ENGPRQREKIL 615 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~-e~~~~~~~~~l 615 (637)
|+|.+++....+. ....++.++ |+|||||.+++.|- .+.+..++ ..=.++...+.. .......+.+.
T Consensus 136 D~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dG~~ 208 (221)
T 3u81_A 136 DMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMKVVDGLE 208 (221)
T ss_dssp SEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCCCCCceE
Confidence 9999876554432 123566677 99999999999753 23433333 334566655431 11122457888
Q ss_pred EEEec
Q 006633 616 FANKK 620 (637)
Q Consensus 616 ~~~K~ 620 (637)
+++++
T Consensus 209 ~~~~~ 213 (221)
T 3u81_A 209 KAIYQ 213 (221)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88775
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.5e-06 Score=88.26 Aligned_cols=141 Identities=19% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccc-cccCCCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wc-e~~~~yp~t~Dl~H~~~ 548 (637)
....+|||+|||.|.++.+|.+. ++ .++.+|. +.++..+.++ |+-+-+.-.+ ..+...|..||+|.+.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEec
Confidence 45689999999999999999765 23 3444555 4677776653 4421111111 22334676699999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--H-----------------------HHHHHHHHHhcCCceeEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD--V--D-----------------------ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~-----------------------~~~~~~~~~~~~~W~~~~ 601 (637)
++-.+.+. ....+|-++-|+|||||+++|.|. . + ....++++++.-.++...
T Consensus 257 vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 257 VLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred cccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 87654322 224899999999999999999876 2 1 234556677777777653
Q ss_pred eccCCCCC--CcceEEEEEecC
Q 006633 602 ADHENGPR--QREKILFANKKY 621 (637)
Q Consensus 602 ~~~e~~~~--~~~~~l~~~K~~ 621 (637)
...-.+.. -...++.++|+=
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 336 ERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEECCSSCSSCEEEEEEEECC
T ss_pred EEECCCCcccCCcEEEEEEECc
Confidence 32222221 012788888853
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-06 Score=76.47 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=75.6
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccC------C-CC-Cccce
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMS------T-YP-RTYDL 543 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~------~-yp-~t~Dl 543 (637)
..+|||+|||.|.++.+|++. .|+.+-+.+ ++.. .. +...+ |+.+ +. . ++ .+||+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~------~~~~---~~-~~~~~~d~~~-~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP------MDPI---VG-VDFLQGDFRD-ELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC------CCCC---TT-EEEEESCTTS-HHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc------cccc---Cc-EEEEEccccc-chhhhhhhccCCCCceeE
Confidence 569999999999999998764 233433333 2211 11 12222 2221 11 0 44 78999
Q ss_pred eeeccccccCCCC--c------CHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeEE-e-ccCCCCCCcc
Q 006633 544 IHADSIFSLYKDR--C------EMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRI-A-DHENGPRQRE 612 (637)
Q Consensus 544 ~H~~~lfs~~~~~--c------~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~-~-~~e~~~~~~~ 612 (637)
|.++..+...... - ....+|.++-|+|||||.+++.... .....+.+..+. .|+... . .........|
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSRE 170 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCE
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCce
Confidence 9998776543221 0 0158899999999999999997432 223334443333 255432 2 2222333568
Q ss_pred eEEEEEe
Q 006633 613 KILFANK 619 (637)
Q Consensus 613 ~~l~~~K 619 (637)
..+++++
T Consensus 171 ~~~~~~~ 177 (180)
T 1ej0_A 171 VYIVATG 177 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 8888876
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-06 Score=84.76 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=69.7
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc----cchhh-ccccccCCC-CCc-cceeeec
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL----IGTYQ-NWCEAMSTY-PRT-YDLIHAD 547 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl----~~~~~-~wce~~~~y-p~t-~Dl~H~~ 547 (637)
.+|||+|||+|.++.+++.++. -.|+.+|.++.++..+.++ |+ +-+++ |..+..... +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 5899999999999998766653 3567778887888887764 33 22232 222222223 478 9999987
Q ss_pred cccccCCCCcCHHHHHHHH--hhcccCCcEEEEEeCHH
Q 006633 548 SIFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRDDVD 583 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~~ 583 (637)
..|. .-..+.++-++ -|+|||||.+++.....
T Consensus 133 ~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7754 23567888888 78999999999976543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.09 E-value=4.5e-06 Score=85.00 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=76.8
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh-----cc--cchhh-ccccccCCCC-Ccccee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER-----GL--IGTYQ-NWCEAMSTYP-RTYDLI 544 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR-----gl--~~~~~-~wce~~~~yp-~t~Dl~ 544 (637)
....+|||+|||.|+++.+|++. +- ..|+.+|.++..+..+.++ |+ +-+++ |..+ .+| .+||+|
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD~V 183 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYDAV 183 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCccEE
Confidence 44679999999999999999765 21 2456667776788877766 53 22222 3322 344 789998
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCcee
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEG 599 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~ 599 (637)
-+ +--+...+|-++-|+|||||.+++.+... ....+.+.++...|..
T Consensus 184 i~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 184 IA--------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp EE--------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred EE--------cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 77 22344689999999999999999987643 5566666666555544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=79.07 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=75.0
Q ss_pred CceeEeeecccchhhhhhhcCC--C-eEEEEeccCCCCcchhHHHHhhc----ccchhh-cccc--ccCCCCCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--P-LWVMNTVPVEAKINTLGVIYERG----LIGTYQ-NWCE--AMSTYPRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~-v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~-~wce--~~~~yp~t~Dl~H~ 546 (637)
...+|||+|||.|.++.+|++. + - .|+.+|.++.++..+.++- -+-.++ |..+ .+...+.+||+|-+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 4568999999999999998754 1 2 3344455555555443321 122222 3222 11234578999887
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------H--HHHHHHHHHhcCCceeEE-eccCCCCC-Ccce
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV---------D--ILVKIKSITDGMEWEGRI-ADHENGPR-QREK 613 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------~--~~~~~~~~~~~~~W~~~~-~~~e~~~~-~~~~ 613 (637)
+.. ..-....+|.++-|+|||||++++.-.. . ....++++ ..- ++... .+.+ +. ...-
T Consensus 150 ~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~--~~~~~~~ 220 (227)
T 1g8a_A 150 DVA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLE--PYEKDHA 220 (227)
T ss_dssp CCC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECT--TTSSSEE
T ss_pred CCC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccC--cccCCCE
Confidence 543 1112235599999999999999995211 1 11455555 333 66543 2322 22 2345
Q ss_pred EEEEEec
Q 006633 614 ILFANKK 620 (637)
Q Consensus 614 ~l~~~K~ 620 (637)
+++++|+
T Consensus 221 ~~~~~~~ 227 (227)
T 1g8a_A 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7777763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-06 Score=85.66 Aligned_cols=99 Identities=14% Similarity=0.037 Sum_probs=59.0
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCC-cchhHHH---H----hhcccchhhccccccCCCC----Cccce
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAK-INTLGVI---Y----ERGLIGTYQNWCEAMSTYP----RTYDL 543 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~-~~~l~~~---~----eRgl~~~~~~wce~~~~yp----~t~Dl 543 (637)
....|||+|||.|.++.+|++. +- .+|+.+|.+ +.+++.+ . ++|+..+. --+.....+| ..+|.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~-~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN--TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV-FVIAAAESLPFELKNIADS 100 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT--EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEE-EECCBTTBCCGGGTTCEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEcCHHHhhhhccCeEEE
Confidence 3678999999999999999832 22 356777777 5666665 3 33552211 0112223334 33444
Q ss_pred eeecccccc--CCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 544 IHADSIFSL--YKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 544 ~H~~~lfs~--~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
++++--+.. ...+-+.+.+|.|+-|+|||||.++|
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 444211110 01112335789999999999999999
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.08 E-value=7.6e-07 Score=82.64 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=66.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC---Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP---RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp---~t~Dl~H~~~ 548 (637)
..+|||+|||+|.++.+|++... +|+.+|.++.++..+.++ |+ +-+++ |+.+.....+ .+||+|.++.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 46899999999999999988754 277778877788777654 32 22222 3322222222 3899999988
Q ss_pred ccccCCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMD--RILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 582 (637)
.|. . ..+.++.++- |+|+|||.+++....
T Consensus 119 ~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA--M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 776 2 3456666666 999999999997543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=80.32 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=75.9
Q ss_pred CceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh-----cc--cchhh-ccccccCCCC-Ccccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER-----GL--IGTYQ-NWCEAMSTYP-RTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR-----gl--~~~~~-~wce~~~~yp-~t~Dl~ 544 (637)
...+|||+|||.|.++.+|++. .. +|+.+|.++.++..+.++ |. +-+.+ |..+. ++| .+||+|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEE
Confidence 3669999999999999998765 22 455556666788887776 52 22222 33322 255 789998
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCcee
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEG 599 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~ 599 (637)
-++ --+...+|-++.|+|+|||.+++.... +.+.++.+.++...|..
T Consensus 171 ~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 171 ALD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 872 234458899999999999999998764 35666666666665543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-06 Score=87.07 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=89.1
Q ss_pred ccCCCCCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccc-cccCCCCCccce
Q 006633 471 QLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYPRTYDL 543 (637)
Q Consensus 471 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wc-e~~~~yp~t~Dl 543 (637)
.+.. ....+|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.-.+ ..+.++|..||+
T Consensus 164 ~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~ 238 (332)
T 3i53_A 164 KYDW-AALGHVVDVGGGSGGLLSALLTAHEDL---SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGG 238 (332)
T ss_dssp SSCC-GGGSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSE
T ss_pred hCCC-CCCCEEEEeCCChhHHHHHHHHHCCCC---eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcE
Confidence 3444 56789999999999999999763 33 2233355 4677766654 5522111111 223556778999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H------------HHHHHHHHHhcCCceeEE
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D------------ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~------------~~~~~~~~~~~~~W~~~~ 601 (637)
|.+.+++-.+.+. ....+|-++-|+|||||+++|.|.. + ....++++++.-.++..-
T Consensus 239 v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 239 YVLSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317 (332)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEEehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 9998887655432 3468999999999999999997641 0 134566666666666653
Q ss_pred eccCCCCCCcceEEEEEe
Q 006633 602 ADHENGPRQREKILFANK 619 (637)
Q Consensus 602 ~~~e~~~~~~~~~l~~~K 619 (637)
...-. + ..|+.++|
T Consensus 318 ~~~~~-~---~~vie~r~ 331 (332)
T 3i53_A 318 AHPIS-Y---VSIVEMTA 331 (332)
T ss_dssp EEECS-S---SEEEEEEE
T ss_pred EEECC-C---cEEEEEee
Confidence 33221 1 56777765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.07 E-value=6e-06 Score=80.14 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred ceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
..+|||+|||.|.++.+|++. + - -.|+.+|.++.++..+.++ |+ +-+++ |..+.+...+. ||+|.++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISIS--SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 468999999999999999765 1 1 2445556666677776643 44 22222 33233344457 9999875
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
. .....+.+|-++-|+|||||.+++.+
T Consensus 134 ~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 C------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 23466889999999999999999854
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-06 Score=86.59 Aligned_cols=104 Identities=15% Similarity=0.232 Sum_probs=71.2
Q ss_pred hhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchh-hccccccCCCC
Q 006633 468 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTY-QNWCEAMSTYP 538 (637)
Q Consensus 468 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~-~~wce~~~~yp 538 (637)
++..+.. .. .+|||+|||.|.++.+|++. |- ..++..|. +.++..+.++ |+ +... +|. +..+|
T Consensus 160 ~~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~ 231 (334)
T 2ip2_A 160 IPRLLDF-RG-RSFVDVGGGSGELTKAILQAEPS--ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM---LQEVP 231 (334)
T ss_dssp HHHHSCC-TT-CEEEEETCTTCHHHHHHHHHCTT--CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT---TTCCC
T ss_pred HHHhCCC-CC-CEEEEeCCCchHHHHHHHHHCCC--CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC---CCCCC
Confidence 3333444 44 89999999999999999764 21 13444455 4677776654 33 2222 232 33567
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..||+|.+..++..+.+. ....+|-++-|+|+|||+++|.|
T Consensus 232 ~~~D~v~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp SSCSEEEEESCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEEchhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 889999998888655422 33589999999999999999985
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.5e-06 Score=85.50 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=90.2
Q ss_pred HhhhccCCCCC-ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccc---hh-hccccccC
Q 006633 467 SVDYQLAQPGR-YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIG---TY-QNWCEAMS 535 (637)
Q Consensus 467 ~~~~~l~~~~~-~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~---~~-~~wce~~~ 535 (637)
.++..+.. .. ..+|||+|||.|.++.+|++. ++ .++-.|.+ .++..+.++ |+-. .. +|..+.-.
T Consensus 169 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGV-FARARTVIDLAGGHGTYLAQVLRRHPQL---TGQIWDLP-TTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp HHHHTCGG-GTTCCEEEEETCTTCHHHHHHHHHCTTC---EEEEEECG-GGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred HHHHhCCC-cCCCCEEEEeCCCcCHHHHHHHHhCCCC---eEEEEECH-HHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 44444444 34 789999999999999999764 33 22333443 566665543 5422 11 12222111
Q ss_pred CCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H-----------------HHHHH
Q 006633 536 TYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D-----------------ILVKI 588 (637)
Q Consensus 536 ~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~-----------------~~~~~ 588 (637)
..|..||+|.+.+++..+.+ -....+|-++-|+|||||.++|.|.. . ....+
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred cCCCCccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHH
Confidence 15678999999888875532 23468999999999999999997520 0 12345
Q ss_pred HHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 589 KSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 589 ~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
+++++.-.++..... .+...+++++|+
T Consensus 323 ~~ll~~aGf~~~~~~-----~g~~~l~~a~kp 349 (352)
T 3mcz_A 323 AGVVRDAGLAVGERS-----IGRYTLLIGQRS 349 (352)
T ss_dssp HHHHHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred HHHHHHCCCceeeec-----cCceEEEEEecC
Confidence 566666666655421 235778999986
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-06 Score=83.27 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=66.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
....+|||+|||.|.++..|++.. -+|+.+|.++..+..+.++ |+ +.+.+ |..+.. .-+.+||+|.+++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~ 151 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTA 151 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEcc
Confidence 346789999999999999998773 3566667777788887765 43 22222 222211 1137899999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
.+..... ++-|+|||||.+++.-..
T Consensus 152 ~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 152 APPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp BCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred chhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 7754443 688999999999997544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.6e-06 Score=85.97 Aligned_cols=137 Identities=20% Similarity=0.276 Sum_probs=88.6
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccC--CCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMS--TYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~--~yp~t~Dl~H~~~l 549 (637)
...+|||+|||.|.++.+|.+. +- ..++.+|.+ .++..+.++ |+-.-+.-.+..+. .+|..||+|.+.++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPN--AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTT--CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCC--CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcch
Confidence 3579999999999999999765 21 255666777 777777665 44221111112221 45666999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------------------------HHHHHHHHHhcCCceeEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---------------------------ILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------------------------~~~~~~~~~~~~~W~~~~~ 602 (637)
+..+.+ -+...+|-++-|+|+|||+++|.|... ....++++++.-.++....
T Consensus 242 l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 242 LHHFDV-ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hccCCH-HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 765532 234689999999999999999975310 1455666777777765543
Q ss_pred ccCCCCCCcceEEEEEec
Q 006633 603 DHENGPRQREKILFANKK 620 (637)
Q Consensus 603 ~~e~~~~~~~~~l~~~K~ 620 (637)
..-.+ ...+++++++
T Consensus 321 ~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 321 HSLPT---TQQQVIVAYK 335 (335)
T ss_dssp ECCTT---SSSEEEEEEC
T ss_pred EECCC---CceeEEEecC
Confidence 22222 3467777664
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=80.45 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=81.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh-------cc---cchhh-ccccccC-----CC-CC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-------GL---IGTYQ-NWCEAMS-----TY-PR 539 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-------gl---~~~~~-~wce~~~-----~y-p~ 539 (637)
...+|||+|||.|.++..|+++.- ..+|+.+|.++.++..+.++ |+ +-+++ |..+... .+ +.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 457899999999999998876520 14667777777777777653 33 22333 2222111 24 37
Q ss_pred ccceeeecccccc---------------CCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 540 TYDLIHADSIFSL---------------YKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 540 t~Dl~H~~~lfs~---------------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
+||+|-++--|.. +...+.++.++-++-|+|+|||.+++--..+.+..+.+.++.- |...
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~~ 189 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGGL 189 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCce
Confidence 8999999744321 2334678899999999999999999987777777777777664 6543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-06 Score=85.15 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh------------cc--cchhh-ccccccCC-CC-Cc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER------------GL--IGTYQ-NWCEAMST-YP-RT 540 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR------------gl--~~~~~-~wce~~~~-yp-~t 540 (637)
...|||+|||+|+|+.+|++..- -.+|+.+|.++.++..+.++ |+ +-+++ |..+.+.. ++ .+
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 57899999999999999876521 13566777776788777654 55 22222 22222222 44 77
Q ss_pred cceeeeccccccC-------CCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCc
Q 006633 541 YDLIHADSIFSLY-------KDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGMEW 597 (637)
Q Consensus 541 ~Dl~H~~~lfs~~-------~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~~W 597 (637)
+|.|.. .|+.- +.|-..+.+|.++.|+|+|||.+++ +|..+..+.+.+.+....+
T Consensus 129 ~d~v~~--~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 129 LSKMFF--CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEE--ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred cCEEEE--ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 887653 12210 1122236899999999999999998 5776666666665554443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-06 Score=80.73 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=67.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCC---CCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY---PRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~y---p~t~Dl~H~ 546 (637)
..+|||+|||.|.++.++++++. .+|+.+|.++.++..+.++ |+ +-+++ |+.+..... +..||+|-+
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 56899999999999998877653 3566667766777766543 33 23333 443322222 478999998
Q ss_pred ccccccCCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006633 547 DSIFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRDDV 582 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 582 (637)
+..|.. -..+.++.++ .|+|+|||.+++....
T Consensus 123 ~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 123 DPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 777541 2456666666 9999999999997543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=84.67 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC--
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-- 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp-- 277 (637)
..++.+.+.+... +.+|||+|||+|.++..|++.. |+++|+++..+..+..+ +..+++ ++.+..+|+..+.
T Consensus 201 ~l~~~~~~~~~~~---~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n-~~~ng~~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 201 QMLEWALDVTKGS---KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYN-IAANHIDNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHTTTC---CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHH-HHHTTCCSEEEECCCSHHHHHH
T ss_pred HHHHHHHHHhhcC---CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEECCHHHHHHH
Confidence 3444455444332 3489999999999999999863 55565554443333322 223444 5788887765531
Q ss_pred CCC--------------CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPS--------------RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd--------------~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.. .+||+|+...-. . .+..++.+.|+++|.+++..
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr---~-----g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPR---S-----GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCT---T-----CCCHHHHHHHTTSSEEEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCc---c-----ccHHHHHHHHhCCCEEEEEE
Confidence 121 379999975422 1 13356777788888888875
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.02 E-value=9.6e-06 Score=81.51 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=58.5
Q ss_pred CCceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcch----hHHHHhhc-ccchhhcccccc--CCCCCccceee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINT----LGVIYERG-LIGTYQNWCEAM--STYPRTYDLIH 545 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~----l~~~~eRg-l~~~~~~wce~~--~~yp~t~Dl~H 545 (637)
....+|||+|||+|+++.+|++. .- .|+.+|.++.+ +..+.+|. +..+..|-.... ...+..||+|.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence 44688999999999999888753 11 23444555444 34444543 222222322211 12247899998
Q ss_pred eccccccCCCCcCHHHHHHH-HhhcccCCcEEEEE
Q 006633 546 ADSIFSLYKDRCEMEDVLLE-MDRILRPEGSVIIR 579 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e-~dRiLrPgG~~i~~ 579 (637)
++..+ .+...+|.+ +.|+|||||.+++.
T Consensus 152 ~d~a~------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 152 VDIAQ------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp ECCCC------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecCCC------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 86432 455666655 56699999999986
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-06 Score=84.00 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=70.8
Q ss_pred CceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh-------cc-------------------------
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER-------GL------------------------- 523 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR-------gl------------------------- 523 (637)
...+|||+|||+|.++..|++.- .-..+|+.+|.++.++..+.++ |+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 45789999999999999987650 0124778888887888777643 33
Q ss_pred ---cc-------------hhh-ccccccCC--C-C-CccceeeeccccccCCC------CcCHHHHHHHHhhcccCCcEE
Q 006633 524 ---IG-------------TYQ-NWCEAMST--Y-P-RTYDLIHADSIFSLYKD------RCEMEDVLLEMDRILRPEGSV 576 (637)
Q Consensus 524 ---~~-------------~~~-~wce~~~~--y-p-~t~Dl~H~~~lfs~~~~------~c~~~~~l~e~dRiLrPgG~~ 576 (637)
+. ..+ |+.+.+.. . + ..||+|-++-.|..... .-....++-++-|+|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 11 221 32221110 0 3 48999999866543322 123458899999999999999
Q ss_pred EEEeCH
Q 006633 577 IIRDDV 582 (637)
Q Consensus 577 i~~d~~ 582 (637)
++.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 997654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-06 Score=84.05 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=66.1
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhh-ccccccCCCCCccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.++..|.+.. -+|+.+|.++.++..+.++.- +-+.+ |..+.+ +-+.+||+|.+++++.
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAP 145 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBS
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHH
Confidence 35689999999999999998765 366677777788888877731 22222 322211 1237899999987775
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
... -++-|+|||||.+++....
T Consensus 146 ~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 146 TLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp SCC---------HHHHHTEEEEEEEEEEECS
T ss_pred HHH---------HHHHHHcCCCcEEEEEEcC
Confidence 322 3789999999999998653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-06 Score=87.96 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=71.2
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc--------cchhhccccccCCC-CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL--------IGTYQNWCEAMSTY-PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl--------~~~~~~wce~~~~y-p~t~Dl~H~~ 547 (637)
..+|||+|||.|+|+.+|+++ .|+.+-+.|. +..+.++.+ +-.+++ +..+..+ +.+||+|-|+
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m------~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd 147 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYTL------GVGGHEVPRITESYGWNIVKFKS-RVDIHTLPVERTDVIMCD 147 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECC------CCSSCCCCCCCCBTTGGGEEEEC-SCCTTTSCCCCCSEEEEC
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECchh------hhhhhhhhhhhhccCCCeEEEec-ccCHhHCCCCCCcEEEEe
Confidence 578999999999999998875 4555555553 100111111 111100 1222334 4899999997
Q ss_pred cccccCCCCcCHH---HHHHHHhhcccCCc--EEEEEe----CHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEE
Q 006633 548 SIFSLYKDRCEME---DVLLEMDRILRPEG--SVIIRD----DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618 (637)
Q Consensus 548 ~lfs~~~~~c~~~---~~l~e~dRiLrPgG--~~i~~d----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 618 (637)
..+......-+.. .+|-++.|+||||| .|++.. ..+++..++.+.+.+. .+.+...-+-....|..+||.
T Consensus 148 ~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~ 226 (265)
T 2oxt_A 148 VGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSR 226 (265)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESS
T ss_pred CcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEec
Confidence 5522111000001 27788999999999 999963 2322233333332221 222322222233467777774
Q ss_pred e
Q 006633 619 K 619 (637)
Q Consensus 619 K 619 (637)
+
T Consensus 227 ~ 227 (265)
T 2oxt_A 227 A 227 (265)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=77.31 Aligned_cols=132 Identities=12% Similarity=0.178 Sum_probs=71.6
Q ss_pred ceeEeeecccchhhhhhhcCC-C-----eEEEEeccCCCCcchhHHHHhhcccchhhccccccC----------------
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-----LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS---------------- 535 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-----v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~---------------- 535 (637)
..+|||+|||.|+++.+|+++ + |+.+-+.|... ..++.-+..|+.+ ..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---------~~~v~~~~~d~~~-~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---------IPNVYFIQGEIGK-DNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---------CTTCEEEECCTTT-TSSCCC-----------C
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---------CCCceEEEccccc-hhhhhhccccccccccch
Confidence 478999999999999999754 2 44444444211 0121111112221 11
Q ss_pred --------CCC-CccceeeeccccccCCCC-cC-------HHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCc
Q 006633 536 --------TYP-RTYDLIHADSIFSLYKDR-CE-------MEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEW 597 (637)
Q Consensus 536 --------~yp-~t~Dl~H~~~lfs~~~~~-c~-------~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W 597 (637)
.+| .+||+|.+++.+...... -+ ...+|.++-|+|||||.+++..-. +....+...++..-.
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~ 172 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQ 172 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEE
T ss_pred hhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 034 689999997765431100 01 124788999999999999996321 223344444444322
Q ss_pred eeEEec-cCCCCCCcceEEEEEe
Q 006633 598 EGRIAD-HENGPRQREKILFANK 619 (637)
Q Consensus 598 ~~~~~~-~e~~~~~~~~~l~~~K 619 (637)
++.+.. ....+...|..+||++
T Consensus 173 ~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 173 LVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEEECCCC-----CCEEEEEEEE
T ss_pred eEEEECCcccCCcCceEEEEEec
Confidence 333332 2222345788999976
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.6e-06 Score=81.80 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=60.4
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc----cchhh-ccccc--cCCCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEA--MSTYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~-~wce~--~~~yp~t~Dl~H~~~ 548 (637)
...+|||+|||+|.++.+|++. + .-.|+.+|.++.++..+.++-- +-.++ |..+. +..++.+||+|-.+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~- 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED- 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-
Confidence 3568999999999999999765 3 1245556666667766655421 11111 22111 12234789987531
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+ ...-..+.+|.++.|+|||||.+++.
T Consensus 151 ~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 V----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp C----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 11112367899999999999999994
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.02 E-value=5.6e-06 Score=82.60 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=76.1
Q ss_pred CCceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cccc---hhh-ccccccCCCC-Cccce
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLIG---TYQ-NWCEAMSTYP-RTYDL 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl~~---~~~-~wce~~~~yp-~t~Dl 543 (637)
....+|||+|||.|.++.+|++. .. .|+.+|.++.++..+.++ |+-. +.+ |..+ .+| .+||+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~ 165 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---GIEEENVDH 165 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---CCCCCSEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---ccCCCCcCE
Confidence 34678999999999999999765 32 445557766788887776 5532 222 4333 355 78999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCC
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGME 596 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~ 596 (637)
|-+ +--+...+|-++.|+|+|||.+++... .+...++.+.++...
T Consensus 166 v~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 166 VIL--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp EEE--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred EEE--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 877 333456789999999999999998753 556666777666655
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=79.41 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=76.5
Q ss_pred CceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcc----hhHHHHhhcccchhh-ccccc--cCCCCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKIN----TLGVIYERGLIGTYQ-NWCEA--MSTYPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~----~l~~~~eRgl~~~~~-~wce~--~~~yp~t~Dl~H~~ 547 (637)
...+|||+|||+|.++.+|++. +- -.|+.+|.++. .+..+.++.-+-.++ |..+. +...+.+||+|.++
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~--~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPD--GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 3568999999999999999765 11 13344455533 344444432222222 33221 12124789999984
Q ss_pred cccccCCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCceeEE-eccCCCCCCcceEE
Q 006633 548 SIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRI-ADHENGPRQREKIL 615 (637)
Q Consensus 548 ~lfs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~-~~~e~~~~~~~~~l 615 (637)
.. ..+. ..++.++-|+|||||.+++.-... .+.+-.++++...|+... .+.+.-+ ..--++
T Consensus 155 ~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v 227 (233)
T 2ipx_A 155 VA------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVV 227 (233)
T ss_dssp CC------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEE
T ss_pred CC------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEE
Confidence 33 2222 345778999999999999963332 122223556666676654 3333222 234566
Q ss_pred EEEe
Q 006633 616 FANK 619 (637)
Q Consensus 616 ~~~K 619 (637)
+++|
T Consensus 228 ~~~~ 231 (233)
T 2ipx_A 228 VGVY 231 (233)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6665
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=84.01 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=89.9
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhcc-ccccCCCCCcccee
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNW-CEAMSTYPRTYDLI 544 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~w-ce~~~~yp~t~Dl~ 544 (637)
+.. ....+|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.-- ...+.++|..||+|
T Consensus 198 ~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v 272 (369)
T 3gwz_A 198 YDF-SGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVY 272 (369)
T ss_dssp SCC-TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEE
T ss_pred CCC-ccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEE
Confidence 444 55789999999999999999764 33 2334455 3666666543 542211111 12235667789999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------H------------HHHHHHHHHhcCCceeE
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------D------------ILVKIKSITDGMEWEGR 600 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~------------~~~~~~~~~~~~~W~~~ 600 (637)
.+.+++-.+.+. ....+|-++-|+|+|||+++|.|.. + ....++++++.-.++..
T Consensus 273 ~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 351 (369)
T 3gwz_A 273 LIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVE 351 (369)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEE
T ss_pred EhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEE
Confidence 998888654322 2247999999999999999997521 1 13556677777778776
Q ss_pred EeccCCCCCCcceEEEEEe
Q 006633 601 IADHENGPRQREKILFANK 619 (637)
Q Consensus 601 ~~~~e~~~~~~~~~l~~~K 619 (637)
....- ......|+.++|
T Consensus 352 ~~~~~--~~~~~svie~~~ 368 (369)
T 3gwz_A 352 RSLPC--GAGPVRIVEIRR 368 (369)
T ss_dssp EEEEC--SSSSEEEEEEEE
T ss_pred EEEEC--CCCCcEEEEEEe
Confidence 44331 113467888876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.7e-06 Score=87.01 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccC--CCCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMS--TYPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~--~yp~t~Dl~H~~ 547 (637)
...+|||+|||.|.++..+++.+. -.|+.+|.+ .++..+.++ |+ +.+++ ..+. ..|..||+|-+.
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~---~d~~~~~~~~~~D~Ivs~ 123 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIP---GKVEEVSLPEQVDIIISE 123 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEE---SCTTTCCCSSCEEEEEEC
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEE---cchhhCCCCCceeEEEEe
Confidence 356899999999999999887754 244555555 366555443 55 33333 2222 346889999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.++..... -.+...|.++.|+|+|||.+++.
T Consensus 124 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 124 PMGYMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCBTTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred CchhcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 77664432 24567888999999999999864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-06 Score=84.38 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=68.1
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCC--CCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY--PRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~y--p~t~Dl~H~ 546 (637)
..+|||+|||.|.++.+|++. + ..+|+.+|.++.++..+.++ |+ +.+.+ |..+..... +.+||+|-+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 458999999999999998765 1 13556667776788887776 54 33332 333322222 478999988
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+..++ ....+|-++-|+|||||.+++.+
T Consensus 133 ~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 65543 56789999999999999999974
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=80.11 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpf 278 (637)
..+.++.+...+.++ .+|||+|||.|.|+..++++ + +.++++.. |+....+.. ...+.++.....+.....+
T Consensus 61 ~KL~ei~ek~~l~~~--~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~~dv~~l 136 (277)
T 3evf_A 61 AKLRWFHERGYVKLE--GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDKTDIHRL 136 (277)
T ss_dssp HHHHHHHHTTSSCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECSCCTTTS
T ss_pred HHHHHHHHhCCCCCC--CEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEeccceehhc
Confidence 333444444334443 48999999999999988876 3 34455542 221100000 0012234444445455567
Q ss_pred CCCCeeEEEeccccc---cCCcCCHH--HHHHHHHhcccCC-eEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLI---PWGQYADG--LYLIEVDRVLRPG-GYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~---h~~~~d~~--~~L~ei~RvLKPG-G~Lvls~p 322 (637)
+++.||+|+|..+.. ++.+ ... .+|..+.++|||| |.|++...
T Consensus 137 ~~~~~DlVlsD~apnsG~~~~D-~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 137 EPVKCDTLLCDIGESSSSSVTE-GERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CCCCCSEEEECCCCCCSCHHHH-HHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCccEEEecCccCcCchHHH-HHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 788999999976552 2332 111 2468889999999 99999864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-06 Score=80.29 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=72.1
Q ss_pred ceeEeeecccchhhhhhhcCCC--eEEEEeccCCCCcchhHHHHhhcccchhhcccccc-----C-CCC----Cccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM-----S-TYP----RTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~-----~-~yp----~t~Dl~H 545 (637)
..+|||+|||+|+++.+|+++. |+.+-+.|.... .++--+..|..+.- . .++ .+||+|-
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~---------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI---------AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC---------TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC---------CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 6799999999999999998874 344444432110 12211111222100 0 011 4899999
Q ss_pred eccccccCCC--------CcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEe-ccCCCCCCcceEE
Q 006633 546 ADSIFSLYKD--------RCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIA-DHENGPRQREKIL 615 (637)
Q Consensus 546 ~~~lfs~~~~--------~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~~~~l 615 (637)
++.-...... ....+.+|-++-|+|||||.|++..- .+....+...++..==++.++ ...+-+...|..+
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEEECC------CCEEEE
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEEECCCCccCCCceEEE
Confidence 8764332111 11234678889999999999998531 122234444444431222232 2223334579999
Q ss_pred EEEec
Q 006633 616 FANKK 620 (637)
Q Consensus 616 ~~~K~ 620 (637)
||++.
T Consensus 177 v~~~~ 181 (191)
T 3dou_A 177 MFFGF 181 (191)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 99763
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-06 Score=85.87 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred CceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCC-Cccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.++..|++. +. +|+.+|.++.++..+.+++- +-... |. +.+ +++ .+||+|.+...
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~-- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRL-PFSDTSMDAIIRIYA-- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSC-SBCTTCEEEEEEESC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhC-CCCCCceeEEEEeCC--
Confidence 3568999999999999999876 33 45666777789999988862 11111 11 122 233 79999998433
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+..|-|+.|+|||||.+++.+.
T Consensus 158 --------~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 158 --------PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp --------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred --------hhhHHHHHHhcCCCcEEEEEEc
Confidence 2358999999999999999754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=9.5e-06 Score=79.46 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=81.7
Q ss_pred ceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-----Cccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTYD 542 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-----~t~D 542 (637)
..+|||+|||+|.++.+|++. + - ..|+.+|.++.++..+.++ |+ +-+++ |..+.+...+ .+||
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPAD--GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 468999999999999999874 1 1 2445556665777777654 54 22222 2222222222 6899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHHHH----HHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKIKS----ITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~e~ 606 (637)
+|.++.. ......++-++-|+|||||.+++.+. ......+++ +...-+++..+...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 219 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL-- 219 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec--
Confidence 9988543 34557899999999999999999532 112223333 34455676666533
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
.+.+++++|.
T Consensus 220 ----~dGl~~~~k~ 229 (229)
T 2avd_A 220 ----GDGLTLAFKI 229 (229)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCceEEEEEC
Confidence 3568888873
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=81.41 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpf 278 (637)
...++.+.+.+...++. +|||||||+|.++..|++++..++.+ |+++.+++.++++ ..++.+..+|+..+++
T Consensus 15 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~av---Eid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTD--TLVEIGPGRGALTDYLLTECDNLALV---EIDRDLVAFLQKKYNQQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSSEEEEE---ECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccccHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence 34566777777666544 99999999999999999985444444 4455555555543 3468899999988876
Q ss_pred CC----CCeeEEEecc
Q 006633 279 PS----RAFDMAHCSR 290 (637)
Q Consensus 279 pd----~sFDlV~~s~ 290 (637)
++ +.|| |+++.
T Consensus 90 ~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGSCCSSCEE-EEEEC
T ss_pred HHhccCCCeE-EEecC
Confidence 53 5688 66665
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-05 Score=83.49 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C----------------------------------------
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---------------------------------------- 240 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~---------------------------------------- 240 (637)
.+...+..+....++ ..+||.+||+|.++..++.. +
T Consensus 188 ~lAa~ll~l~~~~~~--~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 188 TMAAALVLLTSWHPD--RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp HHHHHHHHHSCCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHhCCCCC--CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 344445555554443 48999999999998776643 2
Q ss_pred CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccCCc--CCHHHHHHHHHhcccC--C
Q 006633 241 ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ--YADGLYLIEVDRVLRP--G 314 (637)
Q Consensus 241 v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~--~d~~~~L~ei~RvLKP--G 314 (637)
++++|+++.++..+..+ +...++ .+.+...|...++.+ .+||+|+++.-+..-.. ++...+..++.++||+ |
T Consensus 266 V~GvDid~~al~~Ar~N-a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g 343 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQN-AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT 343 (393)
T ss_dssp EEEEESCHHHHHHHHHH-HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence 66777766544444332 223344 378899999888865 48999999964311111 1344566667777766 8
Q ss_pred eEEEEEeC
Q 006633 315 GYWILSGP 322 (637)
Q Consensus 315 G~Lvls~p 322 (637)
|.+++.++
T Consensus 344 ~~~~iit~ 351 (393)
T 3k0b_A 344 WSVYVLTS 351 (393)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 88888765
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=1e-05 Score=90.80 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----------------------CCEEEEcCccccHHHHHHHH
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----------------------NILAVSFAPRDTHEAQVQFA 259 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----------------------~v~~vdisp~Dls~a~i~~A 259 (637)
+..++.+.+++.... +.+|||.+||+|.|+..+++. .+.++++++....-+..+..
T Consensus 155 ~~iv~~mv~~l~p~~--~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQP--REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 445566677765444 348999999999988776542 46677665433333322222
Q ss_pred HHcCCC------eEEEEeccccCC-CCCCCeeEEEeccccccCCc------------CCHHHHHHHHHhcccCCeEEEEE
Q 006633 260 LERGVP------ALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQ------------YADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 260 ~erg~~------~~~~~~d~~~Lp-fpd~sFDlV~~s~~L~h~~~------------~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
..+.. ..+..+|+...+ .+...||+|+++.-+..... .....++..+.+.|||||++++.
T Consensus 233 -l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 233 -LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp -TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 12333 566777765443 34578999999875533211 01236899999999999999999
Q ss_pred eC
Q 006633 321 GP 322 (637)
Q Consensus 321 ~p 322 (637)
.|
T Consensus 312 ~p 313 (541)
T 2ar0_A 312 VP 313 (541)
T ss_dssp EE
T ss_pred ec
Confidence 76
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1e-05 Score=83.04 Aligned_cols=139 Identities=16% Similarity=0.063 Sum_probs=83.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh-----cc-----------cchhh-ccccccCCCCCc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-----GL-----------IGTYQ-NWCEAMSTYPRT 540 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-----gl-----------~~~~~-~wce~~~~yp~t 540 (637)
.++|||+|||.|+++.+|++.+. .+|+-+|..+..+..+.++ |+ +.+++ |..+-+.. +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 47899999999999999988854 4566667666788877665 32 11111 11111122 688
Q ss_pred cceeeeccccccCCCCc-CHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcc
Q 006633 541 YDLIHADSIFSLYKDRC-EMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQRE 612 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~c-~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~ 612 (637)
||+|-++.........- ....++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+..... ..+ .+..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g~~ 231 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-ASPW 231 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SSSE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CceE
Confidence 99999864422111111 12678899999999999999962 234444444444433223332221 111 2346
Q ss_pred eEEEEEec
Q 006633 613 KILFANKK 620 (637)
Q Consensus 613 ~~l~~~K~ 620 (637)
.+++|.|.
T Consensus 232 ~~~~as~~ 239 (281)
T 1mjf_A 232 AFLVGVKG 239 (281)
T ss_dssp EEEEEEES
T ss_pred EEEEeeCC
Confidence 78889886
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=7.6e-06 Score=86.16 Aligned_cols=138 Identities=19% Similarity=0.258 Sum_probs=87.0
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----ccc---chhhccccccCCCCCccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQNWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~~wce~~~~yp~t~Dl~H~ 546 (637)
....+|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+- -..+ +..+..+|..||++.+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV---SATVLEM-AGTVDTARSYLKDEGLSDRVDVVE--GDFFEPLPRKADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE--CCTTSCCSSCEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC---EEEEecC-HHHHHHHHHHHHhcCCCCceEEEe--CCCCCCCCCCccEEEE
Confidence 44679999999999999998764 33 2333444 3677766653 442 2221 1223456767999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------H------------------HHHHHHHHHhcCCceeE
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--------D------------------ILVKIKSITDGMEWEGR 600 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------~------------------~~~~~~~~~~~~~W~~~ 600 (637)
..++..+.+. ....+|-++-|+|+|||.++|.|.. . ....++++++.-.++..
T Consensus 256 ~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (360)
T 1tw3_A 256 SFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE 334 (360)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred cccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE
Confidence 8887654321 2347999999999999999998643 0 12455666666677665
Q ss_pred EeccCCCC--CCcceEEEEEec
Q 006633 601 IADHENGP--RQREKILFANKK 620 (637)
Q Consensus 601 ~~~~e~~~--~~~~~~l~~~K~ 620 (637)
....-.++ .-...++.++|+
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 335 EVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEeCCCCcccCccEEEEEEeC
Confidence 33222111 011568888884
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-06 Score=86.60 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=82.9
Q ss_pred ceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCCCccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|.++.+|++.. - .+|+.+|.++.++..+.++ |+-..+ -+...+...+.+||+|-++..|..
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPK--IRLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTT--CBCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCccc
Confidence 3479999999999999987652 1 1456667766777776654 432111 122233323589999999888763
Q ss_pred CC--CCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 553 YK--DRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 553 ~~--~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
.. +.-..+.+|.++.|+|||||.+++.... ..-..++++.... +... .+ .+-+|+-++|.
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~~--~~~~--~~----~gf~v~~~~k~ 337 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFH--EVIA--QT----GRFKVYRAIMT 337 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSCC--EEEE--EC----SSEEEEEEEC-
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCce--EEEe--eC----CCEEEEEEEeC
Confidence 21 1234578999999999999999997543 2334455554432 2222 11 35677777663
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.7e-05 Score=92.09 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=72.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----------cc--cchhhccccccCCCCCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----------GL--IGTYQNWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----------gl--~~~~~~wce~~~~yp~t~Dl~H 545 (637)
..+|||+|||.|.++.+|++..--...|+.+|.++.++..+.+| |+ +-.++.=.+.+...+.+||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 57899999999999999998741113667778888899988773 44 2333311122333348999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+..+|....+. ....++-|+-|+|||| .+||+.
T Consensus 802 ~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 802 CLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEe
Confidence 98888765542 2346889999999999 888864
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.5e-06 Score=85.83 Aligned_cols=105 Identities=15% Similarity=0.244 Sum_probs=65.8
Q ss_pred hhccCCCCCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhH--HHHhhcccchhhccc-cccCCCCCccce
Q 006633 469 DYQLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLG--VIYERGLIGTYQNWC-EAMSTYPRTYDL 543 (637)
Q Consensus 469 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~--~~~eRgl~~~~~~wc-e~~~~yp~t~Dl 543 (637)
+..+.. ....+|||+|||.|.++.+|++. ++ .++..|.+ ..+. .+.+.|+-+-+.--+ ..|...| +||+
T Consensus 177 ~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~ 250 (348)
T 3lst_A 177 ARAGDF-PATGTVADVGGGRGGFLLTVLREHPGL---QGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFLREVP-HADV 250 (348)
T ss_dssp HHHSCC-CSSEEEEEETCTTSHHHHHHHHHCTTE---EEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTTTCCC-CCSE
T ss_pred HHhCCc-cCCceEEEECCccCHHHHHHHHHCCCC---EEEEecCH-HHhhcccccccCCCCCeEEEecCCCCCCC-CCcE
Confidence 333444 56899999999999999999763 33 22333333 2222 001123322111111 2235677 9999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|.+..++-.+.+. +...+|-++-|+|||||.++|.|
T Consensus 251 v~~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 251 HVLKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EEEehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 9998877654422 23589999999999999999975
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=84.66 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCEEEEECCCCchHHHHHhhc---------------------CCEEEEcCccccHHHHHHH------H-HHcC--CCeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---------------------NILAVSFAPRDTHEAQVQF------A-LERG--VPALI 268 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---------------------~v~~vdisp~Dls~a~i~~------A-~erg--~~~~~ 268 (637)
..+|+|+||++|..+..+... .+..-|+...|.+.-.... . .+.+ .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 458999999999888776544 1223345445553222111 1 1222 23344
Q ss_pred EEec---cccCCCCCCCeeEEEeccccccCCcCCH-----------------------H---------------HHHHHH
Q 006633 269 GVMA---SIRLPYPSRAFDMAHCSRCLIPWGQYAD-----------------------G---------------LYLIEV 307 (637)
Q Consensus 269 ~~~d---~~~Lpfpd~sFDlV~~s~~L~h~~~~d~-----------------------~---------------~~L~ei 307 (637)
..+. ...-.||+++||+|+++.+| ||...-+ . .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 33456899999999999999 8865211 0 126666
Q ss_pred HhcccCCeEEEEEeC
Q 006633 308 DRVLRPGGYWILSGP 322 (637)
Q Consensus 308 ~RvLKPGG~Lvls~p 322 (637)
.+.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 212 SEELISRGRMLLTFI 226 (384)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhccCCeEEEEEe
Confidence 899999999999965
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=83.79 Aligned_cols=116 Identities=14% Similarity=0.041 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc------------------------------------------C
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------------------------------------------N 240 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~------------------------------------------~ 240 (637)
.+...+..+....++ ..|||++||+|.++..++.. .
T Consensus 182 ~lAa~ll~~~~~~~~--~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAG--RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHHTSCCCTT--SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHhhCCCCC--CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 344455555554443 48999999999998877653 2
Q ss_pred CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccCCc--CCHHHHHHHHHhcccC--C
Q 006633 241 ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ--YADGLYLIEVDRVLRP--G 314 (637)
Q Consensus 241 v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~--~d~~~~L~ei~RvLKP--G 314 (637)
+.++|+++..+..+..+. ...++ .+.+...|...++.+ .+||+|+++.-+..-.. ++...+..++.++||+ |
T Consensus 260 V~GvDid~~ai~~Ar~Na-~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g 337 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENA-EIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN 337 (385)
T ss_dssp EEEEESCHHHHHHHHHHH-HHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred EEEEECCHHHHHHHHHHH-HHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence 566766655444433322 23354 478899998888765 58999999875421111 1345677777778877 8
Q ss_pred eEEEEEeC
Q 006633 315 GYWILSGP 322 (637)
Q Consensus 315 G~Lvls~p 322 (637)
|.+++.++
T Consensus 338 ~~~~iit~ 345 (385)
T 3ldu_A 338 WSYYLITS 345 (385)
T ss_dssp CEEEEEES
T ss_pred CEEEEEEC
Confidence 88887765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-05 Score=79.54 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=77.4
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCC-----CCccce
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYDL 543 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~y-----p~t~Dl 543 (637)
.++|||+|||+|.++.+|++. .|+.+-+.|.-.. ...+.+-+.|+ |-+++ |..+.+..+ +.+||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK-HAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCC-CSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 568999999999999998762 2444444443222 22233334465 22322 222323333 478999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHHH----HhcCCceeEEeccCCC
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKSI----TDGMEWEGRIADHENG 607 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~~----~~~~~W~~~~~~~e~~ 607 (637)
|.+++. .-....+|-++-|+|||||.+++.|-. .....++++ ...=+++..+...
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 210 (242)
T 3r3h_A 140 IFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI--- 210 (242)
T ss_dssp EEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS---
T ss_pred EEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc---
Confidence 988653 223567888999999999999995321 122233333 3444566655432
Q ss_pred CCCcceEEEEEec
Q 006633 608 PRQREKILFANKK 620 (637)
Q Consensus 608 ~~~~~~~l~~~K~ 620 (637)
.+.+++++|+
T Consensus 211 ---~dG~~~~~k~ 220 (242)
T 3r3h_A 211 ---ADGMFLVQPI 220 (242)
T ss_dssp ---SSCEEEEEEC
T ss_pred ---cCceEEEEEc
Confidence 4678888873
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.3e-05 Score=79.24 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=75.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCC-C-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY-P-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~y-p-~t~Dl~H~~ 547 (637)
..+|||+|||.|.++.+|++. ..+|+.+|.++..+..+.++ |+ +...+ |+.+ .. + ..||+|-+
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~- 164 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD---AEVPEGIFHAAFV- 164 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT---SCCCTTCBSEEEE-
T ss_pred CCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh---cccCCCcccEEEE-
Confidence 568999999999999999876 24667778777888888776 33 22222 2222 22 3 68999876
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCce
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWE 598 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~ 598 (637)
+--+...+|-++-|+|||||.+++... .+.+..+.+.++.. |.
T Consensus 165 -------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 165 -------DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp -------CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred -------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 223456889999999999999999876 45666666665554 44
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.92 E-value=7.3e-06 Score=79.80 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=73.4
Q ss_pred CceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHH--------hhcc--cchhhccccccCCCC-Ccccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIY--------ERGL--IGTYQNWCEAMSTYP-RTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~--------eRgl--~~~~~~wce~~~~yp-~t~Dl~ 544 (637)
...+|||+|||+|.++.+|++.. - -+|+.+|.++.++..+. .+|+ +-..+.=.+.++ ++ .+ |.+
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v 102 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPS--RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GEL 102 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTT--EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEE
Confidence 36789999999999999998761 1 35667777777887532 2444 222221112222 33 44 766
Q ss_pred eeccccccCC----CCcCHHHHHHHHhhcccCCcEEEEEeC------------------HH-HHHHHHHHHhcCCceeEE
Q 006633 545 HADSIFSLYK----DRCEMEDVLLEMDRILRPEGSVIIRDD------------------VD-ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 545 H~~~lfs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d~------------------~~-~~~~~~~~~~~~~W~~~~ 601 (637)
.. +|+... +.-+.+.+|-|+-|+|||||.+++... .. ....+.+++..-.|++.-
T Consensus 103 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 103 HV--LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EE--ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EE--EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 62 232100 111226899999999999999999621 11 233477777777887653
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.6e-05 Score=81.34 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=72.0
Q ss_pred CceeEeeecccc---hhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc----ccchhh-ccccc-----c----CCCC
Q 006633 477 RYRNLLDMNAYL---GGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG----LIGTYQ-NWCEA-----M----STYP 538 (637)
Q Consensus 477 ~~r~vlD~~~g~---ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~-~wce~-----~----~~yp 538 (637)
.++.|||+|||+ |.+...+... += ..|+.+|.++.+|..+.++- -+..++ |..+. . ..+|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 478999999999 9887666432 21 25677788778888887762 122221 22110 0 1354
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 539 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 539 -~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+||+|-+.++|-...+. +...+|-|+-|+|||||+++|.+.
T Consensus 155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 589999988888776665 788999999999999999999864
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-06 Score=95.27 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=80.5
Q ss_pred HHHHHHhhhccCCCCCceeEeeeccc------chhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcccchhh-cccc
Q 006633 462 VTYYKSVDYQLAQPGRYRNLLDMNAY------LGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCE 532 (637)
Q Consensus 462 v~~y~~~~~~l~~~~~~r~vlD~~~g------~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce 532 (637)
...|.+++..+.. +..+|||+||| +||....|.++ += ..|+.+|.++.+. ....-|-++. |- +
T Consensus 203 ~~~Ye~lL~~l~~--~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~--a~V~GVDiSp~m~---~~~~rI~fv~GDa-~ 274 (419)
T 3sso_A 203 TPHYDRHFRDYRN--QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR--GQIYGLDIMDKSH---VDELRIRTIQGDQ-N 274 (419)
T ss_dssp HHHHHHHHGGGTT--SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT--CEEEEEESSCCGG---GCBTTEEEEECCT-T
T ss_pred HHHHHHHHHhhcC--CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHh---hcCCCcEEEEecc-c
Confidence 4567777766543 35799999999 78887777643 11 2445555554542 1111122222 21 1
Q ss_pred ccCCC------CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------------HHHHHH
Q 006633 533 AMSTY------PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------------DILVKI 588 (637)
Q Consensus 533 ~~~~y------p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------------~~~~~~ 588 (637)
.++.- +.+||+|.+++.. + -.+....|.|+-|+|||||+++|.|-. .+++.+
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgsH--~--~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~l 350 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGSH--I--NAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLL 350 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSCC--C--HHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHH
T ss_pred ccchhhhhhcccCCccEEEECCcc--c--chhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHH
Confidence 21111 3789999987542 1 235678999999999999999997432 367888
Q ss_pred HHHHhcCCcee
Q 006633 589 KSITDGMEWEG 599 (637)
Q Consensus 589 ~~~~~~~~W~~ 599 (637)
++++..+.|.-
T Consensus 351 k~l~D~l~~~~ 361 (419)
T 3sso_A 351 KSLIDAIQHQE 361 (419)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHhcccc
Confidence 88888888764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.6e-05 Score=80.81 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C----------------------------------------
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---------------------------------------- 240 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~---------------------------------------- 240 (637)
.+...+..+....++ ..+||.+||+|.++...+.. +
T Consensus 181 ~LAaall~l~~~~~~--~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 181 NMAAAIILLSNWFPD--KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp HHHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHhCCCCC--CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 344445555554443 48999999999998776643 2
Q ss_pred CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccc-CCc-CCHHHHHHHHHhcccC--C
Q 006633 241 ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIP-WGQ-YADGLYLIEVDRVLRP--G 314 (637)
Q Consensus 241 v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h-~~~-~d~~~~L~ei~RvLKP--G 314 (637)
++++|+++..+..+..+ +...++ .+.+...|...++.+ .+||+|+++.-+.. +.. ++...+..++.+.||+ |
T Consensus 259 v~GvDid~~al~~Ar~N-a~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKN-AREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp EEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred EEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 66777765444433332 223454 378999999888865 48999999864421 111 1455677777778877 8
Q ss_pred eEEEEEeC
Q 006633 315 GYWILSGP 322 (637)
Q Consensus 315 G~Lvls~p 322 (637)
|.+++.++
T Consensus 337 ~~~~iit~ 344 (384)
T 3ldg_A 337 WSQFILTN 344 (384)
T ss_dssp SEEEEEES
T ss_pred cEEEEEEC
Confidence 88888765
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.4e-06 Score=85.05 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=57.3
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHH-h-hcc--cchhhcccc-ccCCC-CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY-E-RGL--IGTYQNWCE-AMSTY-PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~-e-Rgl--~~~~~~wce-~~~~y-p~t~Dl~H~~~lf 550 (637)
..+|||+|||.|+|..+|+++ .|..+-+.....+ .++..+. + .|. +-+.. . .+... +.+||+|.|+..|
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~-~~~~~~~~~~~~~~~v~~~~---~~D~~~l~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPIPMSTYGWNLVRLQS---GVDVFFIPPERCDTLLCDIGE 158 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCCCCCSTTGGGEEEEC---SCCTTTSCCCCCSEEEECCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCch-hHHHHHHhhhcCCCCeEEEe---ccccccCCcCCCCEEEECCcc
Confidence 579999999999999999887 3544433111111 1111110 1 111 11221 2 23333 4799999998877
Q ss_pred ccCCCCcCHH-----HHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEME-----DVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~~-----~~l~e~dRiLrPgG~~i~~ 579 (637)
+... ..++ .+|.++.|+|||||.|++.
T Consensus 159 ~~g~--~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 159 SSPN--PTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCSS--HHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccCc--chhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5211 1111 4788899999999999996
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-06 Score=84.05 Aligned_cols=131 Identities=11% Similarity=0.197 Sum_probs=87.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCcc---ceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTY---DLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~---Dl~H~ 546 (637)
..+|||+|||.|.++.+|++.+- .+|+.+|.++..+.++.++ |+ +-+++ ||.+. .+..| |+|-+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~Ivs 198 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILS 198 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEE
Confidence 34799999999999999976632 3566777777888887664 44 33333 55443 34688 99988
Q ss_pred cccccc----------CC------CCcCHHHHHHHHh-hcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCCCC
Q 006633 547 DSIFSL----------YK------DRCEMEDVLLEMD-RILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 609 (637)
Q Consensus 547 ~~lfs~----------~~------~~c~~~~~l~e~d-RiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 609 (637)
+--+.. +. ..++-..++.++- +.|+|||++++.-..+....+.++++.. ....|..
T Consensus 199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~---- 271 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSA---- 271 (284)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTT----
T ss_pred cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccC----
Confidence 622211 10 1122237889999 9999999999976666667777776665 3333433
Q ss_pred CcceEEEEEec
Q 006633 610 QREKILFANKK 620 (637)
Q Consensus 610 ~~~~~l~~~K~ 620 (637)
+.+++++++++
T Consensus 272 g~~R~~~~~~k 282 (284)
T 1nv8_A 272 GKYRFLLLNRR 282 (284)
T ss_dssp SSEEEEEEECC
T ss_pred CCceEEEEEEc
Confidence 46788888775
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=79.59 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=80.6
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-----Cccce
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTYDL 543 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-----~t~Dl 543 (637)
.++|||+|||.|.++.+|++. +- .-.|+.+|.++..+..+.++ |+ |-++. |..+.+..+| .+||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 458999999999999998764 10 01345556666677776654 54 22222 2222222232 68999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHHHH----HHhcCCceeEEeccCCC
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKIKS----ITDGMEWEGRIADHENG 607 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~e~~ 607 (637)
|.++.. .-....++-++-|+|||||.+++.+- ......+++ +...-+++..+...
T Consensus 152 V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 222 (232)
T 3cbg_A 152 IFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL--- 222 (232)
T ss_dssp EEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS---
T ss_pred EEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc---
Confidence 987543 23457889999999999999999532 112233333 34445666666532
Q ss_pred CCCcceEEEEEec
Q 006633 608 PRQREKILFANKK 620 (637)
Q Consensus 608 ~~~~~~~l~~~K~ 620 (637)
.+.+.+++|+
T Consensus 223 ---~dG~~~~~~~ 232 (232)
T 3cbg_A 223 ---GDGMTLALKK 232 (232)
T ss_dssp ---BTCEEEEEEC
T ss_pred ---CCeEEEEEeC
Confidence 3568888874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=84.51 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=69.1
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccC--CCCCccce
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMS--TYPRTYDL 543 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~--~yp~t~Dl 543 (637)
+.. ....+|||+|||.|.++.+|+++ ++ .++.+|. +.++..+.++ |+-+-+.-.+..+. ++|. +|+
T Consensus 186 ~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~ 259 (359)
T 1x19_A 186 AKL-DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADA 259 (359)
T ss_dssp CCC-TTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSE
T ss_pred cCC-CCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCE
Confidence 444 45789999999999999999764 22 3344455 4777777665 55321111112222 3444 499
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|.+..++..+.+ -....+|-++-|+|||||.++|.|
T Consensus 260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999888775543 135789999999999999999876
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.4e-05 Score=80.35 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp 279 (637)
...++.+.+.+...+ + +|||||||+|.++..|+++ .++++|+++..+.....+.. ..++.+..+|...++++
T Consensus 33 ~~i~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCChh
Confidence 345667777776544 4 8999999999999999998 46777776654443322221 24688999999888876
Q ss_pred CC-CeeEEEecccc
Q 006633 280 SR-AFDMAHCSRCL 292 (637)
Q Consensus 280 d~-sFDlV~~s~~L 292 (637)
+. .+|.|+++.-+
T Consensus 107 ~~~~~~~iv~NlPy 120 (271)
T 3fut_A 107 EVPQGSLLVANLPY 120 (271)
T ss_dssp GSCTTEEEEEEECS
T ss_pred hccCccEEEecCcc
Confidence 53 68999998744
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=79.47 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=81.6
Q ss_pred ceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCC-----------
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMST----------- 536 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~----------- 536 (637)
..+|||+|||.|.++.+|++. + - -+|+.+|.++..+..+.++ |+ +-+.+ |..+.+..
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPED--GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 458999999999999998764 1 1 2445556666677777665 54 22221 22121111
Q ss_pred --C--C-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHH----HHHHHhcC
Q 006633 537 --Y--P-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVK----IKSITDGM 595 (637)
Q Consensus 537 --y--p-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~----~~~~~~~~ 595 (637)
| + .+||+|.++.. .-..+.+|-++-|+|||||.+++.+- ...... .+.+.+.-
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDS 212 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCC
Confidence 2 2 68999987532 23456889999999999999999751 112222 33344556
Q ss_pred CceeEEeccCCCCCCcceEEEEEecC
Q 006633 596 EWEGRIADHENGPRQREKILFANKKY 621 (637)
Q Consensus 596 ~W~~~~~~~e~~~~~~~~~l~~~K~~ 621 (637)
++.+...-. .+.+.+++|++
T Consensus 213 ~~~~~~~p~------~~g~~~~~~~~ 232 (239)
T 2hnk_A 213 LVDVSLVPI------ADGVSLVRKRL 232 (239)
T ss_dssp TEEEEEECS------TTCEEEEEECC
T ss_pred CeEEEEEEc------CCceEeeeehh
Confidence 677666533 24588888876
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.87 E-value=6.8e-06 Score=79.85 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=68.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.++.+++.++. -.|+.+|.++.++..+.++ |+ +-+++ |..+.....+.+||+|-++..|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 35899999999999998766653 2677888887888887654 33 33333 3222222234789999887665
Q ss_pred ccCCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006633 551 SLYKDRCEMEDVLLEMD--RILRPEGSVIIRDDV 582 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 582 (637)
. .-..+.++-++. |+|+|||.+++....
T Consensus 133 ~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R----RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4 234567777775 579999999998654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.7e-07 Score=89.71 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=67.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||.|+++.+|++.+ ..|+.+|.++.++..+.++ |+ +-+++ |+.+ +. -+.+||+|.++..
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPP 153 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCC
T ss_pred CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCC
Confidence 5689999999999999999886 4677778877788877654 33 22232 2222 11 2379999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|...... ...+.|+.|+|+|||.+|+..
T Consensus 154 ~~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 7753322 236678999999999987754
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.9e-06 Score=85.02 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=55.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc--------cchhhccccccCCC-CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL--------IGTYQNWCEAMSTY-PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl--------~~~~~~wce~~~~y-p~t~Dl~H~~ 547 (637)
..+|||+|||.|+|+.+|+++ .|+.+-+.|. +..+.++.+ +-.+.+ +..+..+ +.+||+|-|+
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m------~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~Vvsd 155 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYTL------GTSGHEKPRLVETFGWNLITFKS-KVDVTKMEPFQADTVLCD 155 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEECC------CCTTSCCCCCCCCTTGGGEEEEC-SCCGGGCCCCCCSEEEEC
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECchh------hhhhhhchhhhhhcCCCeEEEec-cCcHhhCCCCCcCEEEEC
Confidence 678999999999999999876 4555555442 111111111 111100 1122223 4899999986
Q ss_pred cccccCCCCcCHH---HHHHHHhhcccCCc--EEEEE
Q 006633 548 SIFSLYKDRCEME---DVLLEMDRILRPEG--SVIIR 579 (637)
Q Consensus 548 ~lfs~~~~~c~~~---~~l~e~dRiLrPgG--~~i~~ 579 (637)
..+......-+.. .+|-++.|+||||| .|++.
T Consensus 156 ~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 156 IGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 5522111000001 36888999999999 99985
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.5e-05 Score=78.91 Aligned_cols=143 Identities=11% Similarity=0.131 Sum_probs=86.4
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCCCcccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp~t~Dl~ 544 (637)
..++|||+|||.|+++.+++++ ++ ..|+-+|..+..+.++.+. ++ +.+++ |--+.+...+.+||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 3689999999999999999887 55 3445555555677777664 22 11222 1111122235899999
Q ss_pred eeccccccCCC-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccC--CCCCCcceEEE
Q 006633 545 HADSIFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKILF 616 (637)
Q Consensus 545 H~~~lfs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l~ 616 (637)
-++........ .-....++-++-|+|+|||.+++.. ..+.+..+.+.++..=-.+...... .-+.+...+++
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ 232 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence 98644322111 1112578899999999999999972 2344555555555553344433211 11123467889
Q ss_pred EEecC
Q 006633 617 ANKKY 621 (637)
Q Consensus 617 ~~K~~ 621 (637)
|.|++
T Consensus 233 ask~~ 237 (275)
T 1iy9_A 233 GSKKY 237 (275)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 99974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.5e-05 Score=76.25 Aligned_cols=129 Identities=9% Similarity=0.056 Sum_probs=81.2
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----ccc----chhh-ccccccCCC-CCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTY-PRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl~----~~~~-~wce~~~~y-p~t~Dl~ 544 (637)
..+|||+|||+|.++.+|++. +- .|+.+|.++.++..+.++ |+- -+++ |..+.+..+ +.+||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 448999999999999988752 22 345556666677666543 432 2222 222333445 4899999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHHHHHHhcCCce----eEEeccCCCC
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKIKSITDGMEWE----GRIADHENGP 608 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~~~~~~~~~W~----~~~~~~e~~~ 608 (637)
-++.. .-....++-++-|+|||||.+++.+- ......++++.+.+++. ..+..
T Consensus 134 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp----- 202 (221)
T 3dr5_A 134 FGQVS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP----- 202 (221)
T ss_dssp EECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEES-----
T ss_pred EEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEee-----
Confidence 87542 23456789999999999999999421 11233445555555444 33321
Q ss_pred CCcceEEEEEecC
Q 006633 609 RQREKILFANKKY 621 (637)
Q Consensus 609 ~~~~~~l~~~K~~ 621 (637)
..+.+++++|.+
T Consensus 203 -~gdGl~~~~~~~ 214 (221)
T 3dr5_A 203 -LGAGLTVVTKAL 214 (221)
T ss_dssp -STTCEEEEEECC
T ss_pred -ccchHHHHHHHH
Confidence 257899999876
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=83.45 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=66.1
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-----------------cchhh-ccccccCCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----------------IGTYQ-NWCEAMSTYP 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----------------~~~~~-~wce~~~~yp 538 (637)
..+|||+|||.|.++.+|++. +- .-.|+.+|.++..+..+.++.- +-+++ |..+....++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 568999999999999998764 10 0134455666677777766421 22222 3333322455
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHh--cCCce
Q 006633 539 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITD--GMEWE 598 (637)
Q Consensus 539 -~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~--~~~W~ 598 (637)
.+||+|.++. .....+|-++-|+|||||.+++... .+.+.++.+.++ ...|.
T Consensus 185 ~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~ 240 (336)
T 2b25_A 185 SLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALS 240 (336)
T ss_dssp ---EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEE
T ss_pred CCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcc
Confidence 6899998732 2223478899999999999998754 334444444333 34444
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=79.06 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=75.9
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~ 546 (637)
..+|||+|||.|.++.+|++. +- .+|+.+|.++..+..+.++ |+ +-.++ |..+. +| ..||+|-+
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~V~~ 187 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDALFL 187 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEEEEE
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccCEEEE
Confidence 568999999999999988765 11 2556667776788887766 54 22222 33332 55 68999877
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCcee
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEG 599 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~ 599 (637)
+ --+...+|-++-|+|+|||.+++.+. .+.+.++.+.++...|..
T Consensus 188 ~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 188 D--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp C--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred C--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 2 22345789999999999999999876 446666666666666653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-05 Score=82.52 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=65.2
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc--------------CCC-eEEEEeccccCCC-
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------------GVP-ALIGVMASIRLPY- 278 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er--------------g~~-~~~~~~d~~~Lpf- 278 (637)
+.+|||+|||+|.++..++++ .|+++|+++..+..+..+..... +.. +.+...|+..+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 448999999999999998876 25666665543333332222220 444 6777777654421
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.||+|+... .. ....++..+.+.|||||.++++.
T Consensus 128 ~~~~fD~I~lDP----~~--~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC----CC--CHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999542 22 34678999999999999988875
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.4e-05 Score=81.21 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=84.1
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc------c----cchhh-ccccccCC-CCCccce
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTYQ-NWCEAMST-YPRTYDL 543 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----~~~~~-~wce~~~~-yp~t~Dl 543 (637)
...+|||+|||.|+++..|++. ++ ..|+.+|.++..+..+.++- + +-++. |..+-... -+++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3578999999999999999876 34 35556666667777776642 1 11222 22221112 2578999
Q ss_pred eeeccccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCcee-EEecc--CCCCCCcceE
Q 006633 544 IHADSIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEG-RIADH--ENGPRQREKI 614 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~-~~~~~--e~~~~~~~~~ 614 (637)
|-++.........-. -..++-++-|+|||||.+++... ......+.+.++...+.. ..... ..-+.+.-.+
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f 252 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT 252 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence 998654322111111 15789999999999999999632 234555666555554433 33221 1112234568
Q ss_pred EEEEec
Q 006633 615 LFANKK 620 (637)
Q Consensus 615 l~~~K~ 620 (637)
++|.|.
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 889886
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=84.87 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=77.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc----cchhhccccccCCC----CCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL----IGTYQNWCEAMSTY----PRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl----~~~~~~wce~~~~y----p~t~Dl~H 545 (637)
..+|||+|||+|+|+.++++.+. .|+.+|.++.++..+.++ |+ +-+++.=+..+... ..+||+|-
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 56899999999999999988765 677888887888877664 43 22222111111111 35899987
Q ss_pred eccc-cccCC------CCcCHHHHHHHHhhcccCCcEEEEEe------C-HHHHHHHHHHHhcCCceeE
Q 006633 546 ADSI-FSLYK------DRCEMEDVLLEMDRILRPEGSVIIRD------D-VDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 546 ~~~l-fs~~~------~~c~~~~~l~e~dRiLrPgG~~i~~d------~-~~~~~~~~~~~~~~~W~~~ 600 (637)
++-- |.... ..-+...++.++-|+|+|||++++.. . ......+++.++....++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 7533 22211 11135688999999999999988753 1 2244555556666666654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=80.70 Aligned_cols=142 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCCCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp~t~Dl~H 545 (637)
..+|||+|||.|+++.+|++. ++ .+|+.+|.++..+.++.++ ++ +.+++ |..+.....+.+||+|-
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 479999999999999999987 44 4556666666787777664 22 11222 21111223358899998
Q ss_pred eccccc-cCC-CCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcceEEE
Q 006633 546 ADSIFS-LYK-DRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREKILF 616 (637)
Q Consensus 546 ~~~lfs-~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~~l~ 616 (637)
++.... ... ..-....++-++-|+|+|||.+++.- ..+....+.+.+++.--.+..... ..-|.+...+++
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence 753211 110 00022688999999999999999962 233333433333333223333221 111224567889
Q ss_pred EEecC
Q 006633 617 ANKKY 621 (637)
Q Consensus 617 ~~K~~ 621 (637)
|.|++
T Consensus 249 as~~~ 253 (296)
T 1inl_A 249 ASKGI 253 (296)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 99974
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.7e-06 Score=81.64 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=60.4
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc----c-------cchhh-ccccccCCCCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG----L-------IGTYQ-NWCEAMSTYPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg----l-------~~~~~-~wce~~~~yp~t~Dl~ 544 (637)
..+|||+|||.|.++..|++. +- ..+|+.+|.++.++..+.++. + +-+.+ |..+.+ .-+..||+|
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i 155 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDAI 155 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCcCEE
Confidence 568999999999999988754 10 014555566667777765542 1 22222 222111 113689999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+++..+. .++-++-|+|||||.+++...
T Consensus 156 ~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 156 HVGAAAP---------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EECSBBS---------SCCHHHHHTEEEEEEEEEEES
T ss_pred EECCchH---------HHHHHHHHhcCCCcEEEEEEe
Confidence 9866552 345688899999999999753
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.2e-05 Score=81.11 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=86.2
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCCCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp~t~Dl~H 545 (637)
..+|||+|||.|+++.++++. ++ .+|+.+|.++..+.++.++ |+ +-+++ |..+.....+.+||+|-
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 478999999999999999887 44 4566667776788887764 22 11222 22222222358899998
Q ss_pred eccccccCCCCcC-HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccC--CCCCCcceEEEE
Q 006633 546 ADSIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKILFA 617 (637)
Q Consensus 546 ~~~lfs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l~~ 617 (637)
++..-......-. -..++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+...... ..+.+.-.+++|
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~a 274 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCC 274 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEe
Confidence 8642111111111 1688999999999999999953 2344555555555544444433211 111123457889
Q ss_pred EecCC
Q 006633 618 NKKYW 622 (637)
Q Consensus 618 ~K~~w 622 (637)
.|++.
T Consensus 275 s~~~~ 279 (321)
T 2pt6_A 275 SKTDT 279 (321)
T ss_dssp ESSTT
T ss_pred eCCCC
Confidence 88753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=78.93 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=63.7
Q ss_pred ceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCC------CCcc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY------PRTY 541 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~y------p~t~ 541 (637)
.++|||+|||.|.++..|++. + - -.|+.+|.++.++.++.++ |+ |-+++ |..+.+..+ +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 468999999999999888653 1 1 2445556666677776553 55 22222 222222223 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|-+++- .-....++-++-|+|||||.+++.+
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99987542 2346788999999999999999863
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.5e-05 Score=82.51 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=68.2
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCC-Cccce
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYP-RTYDL 543 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp-~t~Dl 543 (637)
..++|||+|||.|+++..|++. ++ .+|+.+|.++.++.++.++ |+ +-+++ |+.+.+..++ .+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3579999999999999999887 34 4566667776788887664 33 22222 3333233344 78999
Q ss_pred eeeccccccCCCCcC-HHHHHHHHhhcccCCcEEEEE
Q 006633 544 IHADSIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|-++..-......-. ...++-++-|+|+|||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998643111111111 368899999999999999996
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=76.67 Aligned_cols=110 Identities=11% Similarity=-0.021 Sum_probs=66.8
Q ss_pred HHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCC--
Q 006633 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPS-- 280 (637)
Q Consensus 209 ~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd-- 280 (637)
..++...++. +|||+|||+|..+..|++. .|+++|+++..+.....+ +...+. ++.+...|...++...
T Consensus 95 ~~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 95 AMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATL-LARAGVSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred HHHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeCChHhcCccccc
Confidence 3445545544 9999999999999998874 256666654333322222 222344 5788888887775432
Q ss_pred -CCeeEEEec------ccccc---------CCcCCH-------HHHHHHHHhcccCCeEEEEEeC
Q 006633 281 -RAFDMAHCS------RCLIP---------WGQYAD-------GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 -~sFDlV~~s------~~L~h---------~~~~d~-------~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+||.|++. ..+.. |..++. ..+|..+.++|+ ||.++.++-
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 579999962 11111 111121 246778888887 999998864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.77 E-value=3.2e-05 Score=81.01 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=78.4
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCCCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp~t~Dl~H 545 (637)
.++|||+|||.|+++.+|++. ++ ..|+-+|.++..+.++.++ |+ +-+++ |..+.+..-+.+||+|-
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 579999999999999999887 34 4556666666788887765 32 11121 22121122357899999
Q ss_pred eccccccCCCCcCH-HHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccCCCCC---CcceEEE
Q 006633 546 ADSIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGPR---QREKILF 616 (637)
Q Consensus 546 ~~~lfs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~---~~~~~l~ 616 (637)
++.........-.. ..++-++-|+|||||.+++.. ..+....+.+..+.+--.+..... .-|. +.-.+++
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~-~iP~~~~g~~g~~~ 265 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS-IVSTYPSGSMGYLI 265 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE-ECTTSGGGEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEE-EecCcCCCceEEEE
Confidence 85422111111112 678899999999999999963 223334444443333223332211 1111 1225888
Q ss_pred EEec
Q 006633 617 ANKK 620 (637)
Q Consensus 617 ~~K~ 620 (637)
|.|.
T Consensus 266 ask~ 269 (314)
T 2b2c_A 266 CAKN 269 (314)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8886
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=78.81 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=94.5
Q ss_pred HHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhcccccc-CCCCC
Q 006633 465 YKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAM-STYPR 539 (637)
Q Consensus 465 y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wce~~-~~yp~ 539 (637)
|..+...+.. ..+|||+|||+|.+|.++....=-+ .+..+|-++.++.++.++- +-.-+.- ++.. ...|.
T Consensus 40 Y~~~~~~l~~---~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~-~d~~~~~~~~ 114 (200)
T 3fzg_A 40 YTYVFGNIKH---VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF-LNKESDVYKG 114 (200)
T ss_dssp HHHHHHHSCC---CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE-ECCHHHHTTS
T ss_pred HHHHHhhcCC---CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE-ecccccCCCC
Confidence 4444444544 6799999999999999996652112 6677788888999888763 3211111 2222 23458
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------HHHHHHHHHHHhcCCceeEEeccCCCC
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-----------VDILVKIKSITDGMEWEGRIADHENGP 608 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------~~~~~~~~~~~~~~~W~~~~~~~e~~~ 608 (637)
+||+|-+..++-...++ +..+.++-+.|||||.||--+. .......++.+..=.|.+......
T Consensus 115 ~~DvVLa~k~LHlL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~--- 188 (200)
T 3fzg_A 115 TYDVVFLLKMLPVLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG--- 188 (200)
T ss_dssp EEEEEEEETCHHHHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET---
T ss_pred CcChhhHhhHHHhhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC---
Confidence 89987775555433322 4566789999999999998762 126677788888888888766544
Q ss_pred CCcceEEEEEe
Q 006633 609 RQREKILFANK 619 (637)
Q Consensus 609 ~~~~~~l~~~K 619 (637)
.|-+.|.+|
T Consensus 189 --nEl~y~~~~ 197 (200)
T 3fzg_A 189 --NELVYITSG 197 (200)
T ss_dssp --TEEEEEECC
T ss_pred --ceEEEEEec
Confidence 466666655
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=82.41 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=72.6
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||.|+++.+|++. +- -.|+.+|.++.++..+.++ |+ +-+++.=.+.+..++..||+|-++--
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 568999999999999998753 11 1355667776778777665 55 22332111223334578999998544
Q ss_pred cccCC---CCc---------C-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcCCce
Q 006633 550 FSLYK---DRC---------E-------MEDVLLEMDRILRPEGSVIIRD----DVDILVKIKSITDGMEWE 598 (637)
Q Consensus 550 fs~~~---~~c---------~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~~~W~ 598 (637)
.|... ..- + ...+|-++-|+|||||.++++. ..+....|+.+++...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 33111 000 0 1478899999999999999952 122223445555555443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.6e-05 Score=77.42 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=61.3
Q ss_pred CCceeEeeecccchhhhhhhcCC----C-eEEEEeccCCCCcchhHHHH----hhcccc-hhhccccccCCC---CCccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIY----ERGLIG-TYQNWCEAMSTY---PRTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~----eRgl~~-~~~~wce~~~~y---p~t~D 542 (637)
....+|||+|||.|.|..+|++. + |+.+.+. +.++..+. +++.+- +..|-+. ...| +.++|
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s-----~~~~~~l~~~a~~~~ni~~V~~d~~~-p~~~~~~~~~vD 149 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA-----PRVMRDLLTVVRDRRNIFPILGDARF-PEKYRHLVEGVD 149 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECC-----HHHHHHHHHHSTTCTTEEEEESCTTC-GGGGTTTCCCEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCC-----HHHHHHHHHhhHhhcCeeEEEEeccC-ccccccccceEE
Confidence 45779999999999999999863 2 5555444 45665554 344333 3323332 2223 27888
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+|.++ +. ..-+.+.+|.|+.|+|||||.++|.+
T Consensus 150 vVf~d--~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 150 GLYAD--VA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEC--CC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEe--cc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 87653 11 22245678999999999999999973
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.5e-05 Score=77.35 Aligned_cols=95 Identities=15% Similarity=0.029 Sum_probs=63.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H~~~ 548 (637)
...+|||+|||.|.++..|++..----+|+.+|.++.++..+.++ |+ +-..+ ......+| ..||+|.+++
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV--GDGTLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE--SCGGGCCGGGCCEEEEEESS
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCCCCCeeEEEECC
Confidence 356999999999999998876420001445556666788777765 33 22222 11123343 6899999977
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
.+.... -++-|+|||||.+++....
T Consensus 155 ~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 765332 3889999999999998554
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.5e-05 Score=71.39 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=54.9
Q ss_pred ceeEeeecccchhhhhhhcCC-CeE-------EEEeccCCCCcchhHHHHhhcccchh-h-ccccc------cCCCC-Cc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLW-------VMNTVPVEAKINTLGVIYERGLIGTY-Q-NWCEA------MSTYP-RT 540 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~-------~mnv~~~~~~~~~l~~~~eRgl~~~~-~-~wce~------~~~yp-~t 540 (637)
..+|||+|||.|.++.+|+++ +-- ...|+.+|.++.. . . .++ -.+ + |..+. ...++ ++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-~--~-~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-P--L-EGA-TFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-C--C-TTC-EEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-c--C-CCC-eEEEeccCCCHHHHHHHHHhcCCCC
Confidence 578999999999999998764 200 0123333333211 0 0 011 111 1 11110 01134 68
Q ss_pred cceeeeccccccCCCC--------cCHHHHHHHHhhcccCCcEEEEEe
Q 006633 541 YDLIHADSIFSLYKDR--------CEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
||+|-++..+....+. ...+.+|-++-|+|||||.+++.+
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 9999987644321111 111478899999999999999984
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=84.08 Aligned_cols=95 Identities=16% Similarity=-0.005 Sum_probs=63.3
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
...+|||+|||.|.++..|++..--.-+|+.+|.++.++..+.++ |+ +-+.+ |..+ ...-+..||+|.+++.
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSPYDVIFVTVG 153 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEECSB
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh-ccccCCCeEEEEEcCC
Confidence 356899999999999999876411001345556666788877766 55 22222 2211 1111378999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+.... -++.|+|||||.+++...
T Consensus 154 ~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 154 VDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp BSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred HHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 76433 477899999999999754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0002 Score=68.81 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=81.3
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhhccccccCCCCCccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++ |+ +.++ +..+..+|.+||+|-++.-|.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---~~d~~~~~~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVF---IGDVSEFNSRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEE---ESCGGGCCCCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEE---ECchHHcCCCCCEEEEcCCCc
Confidence 356899999999999999987753 2566677776788777765 32 2222 233444678999999988776
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCceeEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
..... ....+|-++-|+| ||.+++. ........+.+++....|++..
T Consensus 124 ~~~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cccCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 55433 3356788888998 5555444 2666777788888877777664
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.69 E-value=4.7e-05 Score=76.88 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=71.7
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh-----c-c---cchhh-ccccccCCC-CCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER-----G-L---IGTYQ-NWCEAMSTY-PRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR-----g-l---~~~~~-~wce~~~~y-p~t~Dl~ 544 (637)
..+|||+|||.|.++.+|++. +- .+|+.+|.++..+..+.++ | + +-+.+ |..+. .+ +.+||+|
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~~~~D~v 175 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSVDRA 175 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCEEEE
T ss_pred CCEEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCCCceeEE
Confidence 568999999999999999764 21 2456667766788877765 4 2 22222 33322 24 3789998
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhc-CCc
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDG-MEW 597 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~-~~W 597 (637)
-++ --+...+|-++-|+|+|||.+++... .+.+.++.+.++. ..|
T Consensus 176 ~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 176 VLD--------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW 222 (280)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 772 22455889999999999999999754 3445455444443 444
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.6e-05 Score=84.46 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
....+|||+|||.|.++.+|+++ .+ .++..|. +.++..+.+..-+.... +..+.++|. ||+|.+..++..+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~v~~~~--~d~~~~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLI---KGINFDL-PQVIENAPPLSGIEHVG--GDMFASVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCCTTEEEEE--CCTTTCCCC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC---eEEEeCh-HHHHHhhhhcCCCEEEe--CCcccCCCC-CCEEEEecccccC
Confidence 44689999999999999999764 33 2333343 24554443321122111 122334666 9999998888655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+. ....+|-++-|+|||||.++|.|
T Consensus 281 ~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 432 23489999999999999999974
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=4e-05 Score=81.57 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
...+.|||+|||+|.++.+|++. .+- ++-.|.+ .++..+.++.-+.... ...|.++|.. |+|.+..++-.+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~-~~~~~a~~~~~v~~~~--~d~~~~~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSIN---AINFDLP-HVIQDAPAFSGVEHLG--GDMFDGVPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECH-HHHTTCCCCTTEEEEE--CCTTTCCCCC-SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCE---EEEEehH-HHHHhhhhcCCCEEEe--cCCCCCCCCC-CEEEEechhhcC
Confidence 45789999999999999999763 332 2333332 4444443332222221 1233456765 999988877655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+. +...+|-++-|+|||||.++|.|
T Consensus 275 ~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 275 SDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 432 34589999999999999999975
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.1e-05 Score=76.32 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=63.2
Q ss_pred ceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCC------CCcc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY------PRTY 541 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~y------p~t~ 541 (637)
.++|||+|||.|..+.+|++. + - -.|+.+|.++..+.++.++ |+ |-+++ |..+.+..+ +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 568999999999999888653 1 1 2344556665677766543 55 22222 333322333 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|.+++- .-....++-++-|+|||||.+++.+
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99987532 2245788999999999999999864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=75.61 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=82.7
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc------c----cchhh-ccccccCCCCCcccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTYQ-NWCEAMSTYPRTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----~~~~~-~wce~~~~yp~t~Dl~ 544 (637)
..++|||+|||.|+++..+++. ++ .+|+-+|..+..+.++.++= + +-+++ |..+.....+.+||+|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 3579999999999999999876 34 45566666667777776641 1 11111 1111112236889999
Q ss_pred eeccccccCCCCcCH-HHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccCCCCC--CcceEEE
Q 006633 545 HADSIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGPR--QREKILF 616 (637)
Q Consensus 545 H~~~lfs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~--~~~~~l~ 616 (637)
-++.........-.. ..++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+..+...--.. +.-.+++
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~ 235 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 235 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEE
Confidence 986432221111111 688999999999999999973 22344444444444323333322111111 1235777
Q ss_pred EEec
Q 006633 617 ANKK 620 (637)
Q Consensus 617 ~~K~ 620 (637)
|.|.
T Consensus 236 ~s~~ 239 (283)
T 2i7c_A 236 CSKT 239 (283)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8776
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.67 E-value=3.8e-05 Score=81.92 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchHHHHHhhc--------------------CCEEEEcCccccHHHHHHHHHH-cCCCeEEEEe---ccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALE-RGVPALIGVM---ASI 274 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------------------~v~~vdisp~Dls~a~i~~A~e-rg~~~~~~~~---d~~ 274 (637)
.-+|+|+||++|..+..+.+. .+...|+..+|.+........- ...+..|..+ ...
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999766554332 2344567667776443322110 0002233333 234
Q ss_pred cCCCCCCCeeEEEeccccccCCcC--------------------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQY--------------------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~--------------------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...||+++||+|+|+.+| ||... |...+|+...+.|+|||.++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 467999999999999999 88652 122358888999999999999864
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=72.64 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC-CEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~-v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~~Lpfp 279 (637)
...++.+.+.+....+. +|||||||+|.++..|++++ ..++.+ |++..+++.+.++ ..++.+..+|+..++++
T Consensus 17 ~~i~~~iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~av---Eid~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYVI---ELDREMVENLKSIGDERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCCSEEEEE---CCCHHHHHHHTTSCCTTEEEECSCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCCCeEEEE---ECCHHHHHHHHhccCCCeEEEEcchhhCChh
Confidence 44667777777655544 99999999999999999984 555555 6667777777665 23578888999888876
Q ss_pred CCC-eeEEEecc
Q 006633 280 SRA-FDMAHCSR 290 (637)
Q Consensus 280 d~s-FDlV~~s~ 290 (637)
+.. ...|+++.
T Consensus 92 ~~~~~~~vv~Nl 103 (249)
T 3ftd_A 92 SLGKELKVVGNL 103 (249)
T ss_dssp GSCSSEEEEEEC
T ss_pred HccCCcEEEEEC
Confidence 421 22566654
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.65 E-value=5e-05 Score=78.26 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C----CEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N----ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~----v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~ 274 (637)
...++.+.+.+...++. +|||||||+|.++..|+++ . ++++|+++ .+++.++++ ..++.+..+|+.
T Consensus 28 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~-----~~l~~a~~~~~~~v~~i~~D~~ 100 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHAVELDR-----DLIGRLEQRFGELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCH-----HHHHHHHHHHGGGEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEEEECCH-----HHHHHHHHhcCCCcEEEECChh
Confidence 34566777777665544 9999999999999999986 3 66776654 444444443 346788999998
Q ss_pred cCCCCCC------CeeEEEecc
Q 006633 275 RLPYPSR------AFDMAHCSR 290 (637)
Q Consensus 275 ~Lpfpd~------sFDlV~~s~ 290 (637)
.+++++- ..+.|+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 101 TFDFGSIARPGDEPSLRIIGNL 122 (279)
T ss_dssp GCCGGGGSCSSSSCCEEEEEEC
T ss_pred cCChhHhcccccCCceEEEEcc
Confidence 8887532 234566654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=79.27 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=61.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC-C-ccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-R-TYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp-~-t~Dl~H~~~ 548 (637)
...+|||+|||.|.+++.|++..- .+|+.+|.++..+..+.++ |+ +.+.. +.....+| . .||+|.++.
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL--GDGSKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--SCGGGCCGGGCCEEEEEECS
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE--CCcccCCCCCCCccEEEECC
Confidence 356899999999999999976420 2445556555677777664 33 22221 12234455 3 499999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+... .-++-|+|||||.+++.-.
T Consensus 167 ~~~~~---------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 167 GAPKI---------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred cHHHH---------HHHHHHhcCCCcEEEEEEe
Confidence 65432 2378899999999999754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.8e-05 Score=84.38 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=64.8
Q ss_pred CCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHh-----------hcc----cchhhccccccCCCC-
Q 006633 476 GRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYE-----------RGL----IGTYQNWCEAMSTYP- 538 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~e-----------Rgl----~~~~~~wce~~~~yp- 538 (637)
....+|||+|||+|.++..|+. .+. -.|+.+|.++.++.++.+ .|+ |-+++ ..+...|
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~---GD~~~lp~ 246 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER---GDFLSEEW 246 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE---CCTTSHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE---CcccCCcc
Confidence 3467899999999999987764 333 135666776667766654 243 22332 3333333
Q ss_pred ----CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 539 ----RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 539 ----~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
..||+|-++.++ + .-++...|.|+.|+|||||.||+.+.
T Consensus 247 ~d~~~~aDVVf~Nn~~--F--~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 247 RERIANTSVIFVNNFA--F--GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHHHTCSEEEECCTT--C--CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred ccccCCccEEEEcccc--c--CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 368888775542 1 13567888999999999999999854
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=2e-05 Score=87.34 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=65.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
...+|||+|||.|.++..|++.+. ..|+.+|.++ ++..+.++ |+ +.+++ |+-+ + .+|..||+|-++.
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~ 232 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEP 232 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCC
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeC
Confidence 357999999999999999887754 3556666664 66555443 55 33333 2222 1 3568899999977
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
++..... -.+...|.++.|+|+|||.+++
T Consensus 233 ~~~~~~~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 233 MGYMLFN-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CHHHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred chHhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence 6543322 2355677899999999999986
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.2e-05 Score=78.25 Aligned_cols=96 Identities=8% Similarity=0.121 Sum_probs=66.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCC-CcchhHHHHhhc---------c-------cchh-hccccccCCC--
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEA-KINTLGVIYERG---------L-------IGTY-QNWCEAMSTY-- 537 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~-~~~~l~~~~eRg---------l-------~~~~-~~wce~~~~y-- 537 (637)
..+|||+|||+|.++.+|+..+. -.|+.+|. ++.++..+.++- + +-+. .+|.+.....
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 46899999999999998887653 25666777 567777765542 1 2222 3576543332
Q ss_pred ---CCccceeeeccccccCCCCcCHHHHHHHHhhccc---C--CcEEEE
Q 006633 538 ---PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILR---P--EGSVII 578 (637)
Q Consensus 538 ---p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLr---P--gG~~i~ 578 (637)
+..||+|-+..++-. .-+.+.+|-++.|+|+ | ||.+++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HHSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred hccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 478999977444322 2356889999999999 9 997655
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.6e-05 Score=81.20 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=75.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-c---chhh-ccccccCCC---CCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-I---GTYQ-NWCEAMSTY---PRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~---~~~~-~wce~~~~y---p~t~Dl~H 545 (637)
..+|||+|||+|+|+.++++.+. -.|+.+|.++..+..+.+. |+ - -+++ |.-+.+... ...||+|.
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999988752 3566667776677666553 44 2 1221 111111111 35899999
Q ss_pred ecccccc------CCCCcCHHHHHHHHhhcccCCcEEEEEeCH------HHHHHHHHHHhcCCceeE
Q 006633 546 ADSIFSL------YKDRCEMEDVLLEMDRILRPEGSVIIRDDV------DILVKIKSITDGMEWEGR 600 (637)
Q Consensus 546 ~~~lfs~------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~~~~~~~~~~~~W~~~ 600 (637)
++--+.. .........++.++-++|+|||.++++... +....+++.+.....+..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 8643311 112245678999999999999999997432 234555555555444443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=70.22 Aligned_cols=111 Identities=8% Similarity=-0.061 Sum_probs=71.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCCCccceeeeccccccCCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 555 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~ 555 (637)
...+|||+|||.|.++.+|++.+. -.|+.+|.++.++..+.++-- +-+++ ..+..+|.+||+|-++..|....+
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMV---ADVSEISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEE---CCGGGCCCCEEEEEECCCC-----
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEE---CcHHHCCCCeeEEEECCCchhccC
Confidence 356899999999999999987753 346667777778888877631 12222 233335789999999888876544
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME 596 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~ 596 (637)
. ....++-++-|+| |+.+++. +......+.+++....
T Consensus 126 ~-~~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 126 H-SDRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG 162 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE
T ss_pred c-hhHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC
Confidence 2 2246788888888 5544444 4445566666655544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.60 E-value=3.9e-05 Score=78.25 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||+|+|+..|++. + ...|+.+|.++..+..+.+. |+ +-+++.=.+.+ ..+..||+|-++...
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS
T ss_pred CCEEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc
Confidence 578999999999999998765 2 12345556655666666542 33 12222111222 225789999875443
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------HHH-HHHHHHHhcCCceeE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------DIL-VKIKSITDGMEWEGR 600 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~-~~~~~~~~~~~W~~~ 600 (637)
....++.++-|+|+|||.+++++.. +.. +.++.+.+.+.+++.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 5577899999999999999998542 233 334445555555554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00021 Score=81.40 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=61.9
Q ss_pred CCEEEEECCCCchH---HHHHhhc-----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASW---GAYLMSR-----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~---a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
...|||||||+|.+ +...+++ .|.+++-++ ......+...+++ ..+.+..++.+.+..| ..+|+|++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp--~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP--NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS 434 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH--HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH--HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEE
Confidence 45799999999977 3333333 245565544 2222333333343 3478888888888766 57999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
-..-.-+..|-...++....|.|||||.++
T Consensus 435 EwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 443322222234467888899999999874
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=77.25 Aligned_cols=140 Identities=19% Similarity=0.096 Sum_probs=81.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp~t~Dl~H~~~l 549 (637)
.....|||+|||.|+++..++...--...|+.+|.++.++..+.++ |+ |-+.+.=.+.+......||+|-++--
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP 281 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP 281 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence 4467999999999999877655210001345556666777777654 44 22232111222222367899999766
Q ss_pred cccCC-CCcC----HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEe-ccCCCCCCcceEEEEEe
Q 006633 550 FSLYK-DRCE----MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIA-DHENGPRQREKILFANK 619 (637)
Q Consensus 550 fs~~~-~~c~----~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~~~~l~~~K 619 (637)
|..-. ..-. ...++-++-|+|||||.+++......+ ++++.+ ..|+.... ...+|.+ .-.|++++|
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~--~~~~~~-~g~~~~~~~~l~~g~l-~~~i~vl~r 353 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPAL--LKRALP-PGFALRHARVVEQGGV-YPRVFVLEK 353 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHH--HHHHCC-TTEEEEEEEECCBTTB-CCEEEEEEE
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHH--HHHHhh-cCcEEEEEEEEEeCCE-EEEEEEEEc
Confidence 54211 1111 257888999999999999986544322 445555 67766422 2234443 345666665
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=6e-05 Score=80.92 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=63.5
Q ss_pred ceeEeeecccchhhhhhhcC---CCeEEEEeccCCCCcchhHHHHhhcc---cchhhccccccCCCCCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
..+|||+|||+|.++-..++ +.|+.+-..+. -.....++.+.|+ |-+++.--+.+ ..|..||+|=+.-+-+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~--~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAI--WQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHH--HHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEEeecccc
Confidence 45799999999987544443 44655543331 1123445556677 44444222222 3578899987744434
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
..-....++.++...||+|+|||.+|-+
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccchhhhHHHHHHhhCCCCceECCc
Confidence 4444457889999999999999998863
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2.2e-05 Score=82.71 Aligned_cols=95 Identities=14% Similarity=0.227 Sum_probs=64.2
Q ss_pred CceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcccchh-hccccccCCCCCccceeeeccccccC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTY-QNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl~~~~-~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
...+|||+|||.|.++.+|+++ ++ .++..|. +.++..+.+..-+... +|. +.++|. ||+|.+..++..+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~~~p~-~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKL---KCIVFDR-PQVVENLSGSNNLTYVGGDM---FTSIPN-ADAVLLKYILHNW 259 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCBTTEEEEECCT---TTCCCC-CSEEEEESCGGGS
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCC---eEEEeeC-HHHHhhcccCCCcEEEeccc---cCCCCC-ccEEEeehhhccC
Confidence 3679999999999999999864 22 2334444 3555544332112221 222 345665 9999998888766
Q ss_pred CCCcCHHHHHHHHhhcccC---CcEEEEEe
Q 006633 554 KDRCEMEDVLLEMDRILRP---EGSVIIRD 580 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrP---gG~~i~~d 580 (637)
.+. ....+|-++-|+||| ||.++|.|
T Consensus 260 ~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 260 TDK-DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp CHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 432 234899999999999 99999975
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=80.55 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----------------CCEEEEcCccccHHHHHHHHHH---
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----------------NILAVSFAPRDTHEAQVQFALE--- 261 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----------------~v~~vdisp~Dls~a~i~~A~e--- 261 (637)
...++.+.+++.... .+|||.+||+|.|...+++. .....++ |+...+.+.|+.
T Consensus 231 ~~Vv~lmv~ll~p~~---~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~---Eid~~~~~lA~~Nl~ 304 (544)
T 3khk_A 231 KSIVTLIVEMLEPYK---GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQ---ESNPTTWKLAAMNMV 304 (544)
T ss_dssp HHHHHHHHHHHCCCS---EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEEC---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEE---eCCHHHHHHHHHHHH
Confidence 456677777775433 28999999999988776431 2233333 444444444442
Q ss_pred -cCCCeEE--EEeccccCC-CCCCCeeEEEecccccc--CCcC-------------------------CHHHHHHHHHhc
Q 006633 262 -RGVPALI--GVMASIRLP-YPSRAFDMAHCSRCLIP--WGQY-------------------------ADGLYLIEVDRV 310 (637)
Q Consensus 262 -rg~~~~~--~~~d~~~Lp-fpd~sFDlV~~s~~L~h--~~~~-------------------------d~~~~L~ei~Rv 310 (637)
.++...+ ..+|+...+ +++..||+|+++.-+.. |..+ ..-.++..+.+.
T Consensus 305 l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~ 384 (544)
T 3khk_A 305 IRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYH 384 (544)
T ss_dssp HTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHT
T ss_pred HhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHH
Confidence 3443333 555654444 45688999999865532 2110 112689999999
Q ss_pred ccCCeEEEEEeC
Q 006633 311 LRPGGYWILSGP 322 (637)
Q Consensus 311 LKPGG~Lvls~p 322 (637)
|||||++++..|
T Consensus 385 Lk~gGr~aiVlP 396 (544)
T 3khk_A 385 LAPTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEEEE
T ss_pred hccCceEEEEec
Confidence 999999999976
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=9.1e-05 Score=77.07 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=79.4
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCCCcccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp~t~Dl~ 544 (637)
..++|||+|||.|+++..|++. ++ .+|+-+|..+.++.++.++ |+ +-+++ |-.+.+...+.+||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3579999999999999999887 34 3455556666677777654 32 12221 1111122235899999
Q ss_pred eeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEec--cCCCCCCcceEEE
Q 006633 545 HADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIAD--HENGPRQREKILF 616 (637)
Q Consensus 545 H~~~lfs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~--~e~~~~~~~~~l~ 616 (637)
-++......... -....++-++-|+|||||.+++.. ..+....+.+..+.+-=.+...- .-.-+.+...+++
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~ 252 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFML 252 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEE
Confidence 985432211110 012468899999999999999964 12334444443333322222211 0111112346788
Q ss_pred EEec
Q 006633 617 ANKK 620 (637)
Q Consensus 617 ~~K~ 620 (637)
|.|.
T Consensus 253 as~~ 256 (304)
T 2o07_A 253 CSKN 256 (304)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8886
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=7.5e-05 Score=77.93 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=83.2
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------c-c----cchhh-ccccccCCCCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------G-L----IGTYQ-NWCEAMSTYPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------g-l----~~~~~-~wce~~~~yp~t~Dl~ 544 (637)
.++|||+|||.|+++.+|++. ++ .+|+-+|..+..+..+.++ | + +-+++ |..+-+...+.+||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 579999999999999999887 34 3555666666677777653 2 1 11111 1111112235889999
Q ss_pred eecccccc---CC-CCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcc
Q 006633 545 HADSIFSL---YK-DRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIADH--ENGPRQRE 612 (637)
Q Consensus 545 H~~~lfs~---~~-~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~ 612 (637)
-++..... .. ..-....++-++-|+|+|||.+++.- ..+....+.+.++..--.+..... ... .+..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~-~g~~ 234 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGF-FLNF 234 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGG-TEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CCeE
Confidence 98644322 10 00013688999999999999999862 123455555555554333332211 001 1235
Q ss_pred eEEEEEecC
Q 006633 613 KILFANKKY 621 (637)
Q Consensus 613 ~~l~~~K~~ 621 (637)
.+++|.|.+
T Consensus 235 ~~~~as~~~ 243 (314)
T 1uir_A 235 GFLLASDAF 243 (314)
T ss_dssp EEEEEESSS
T ss_pred EEEEEECCC
Confidence 678898874
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.5e-05 Score=83.33 Aligned_cols=100 Identities=7% Similarity=0.096 Sum_probs=63.4
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHH-------Hh----hcc-cchhhcc-ccccCC---C-
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI-------YE----RGL-IGTYQNW-CEAMST---Y- 537 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~-------~e----Rgl-~~~~~~w-ce~~~~---y- 537 (637)
....+|||+|||+|.+++.|++. +. ..|+.+|.+..++..+ .+ .|+ ++-+.-- +..+.. +
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 34678999999999999999874 32 1344555554555555 33 353 1211111 123321 2
Q ss_pred --CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 538 --PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 538 --p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+..||+|-++..+ + .-+++..|.|+-|+|||||.+++.+.
T Consensus 319 ~~~~~FDvIvvn~~l--~--~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL--F--DEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp HHGGGCSEEEECCTT--C--CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccCCCCEEEEeCcc--c--cccHHHHHHHHHHhCCCCeEEEEeec
Confidence 3689999875433 1 13567888999999999999999863
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=4e-05 Score=78.77 Aligned_cols=120 Identities=16% Similarity=0.253 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchh----hhhhhcCC-CeE--EEEeccCCCCcchhHHHHhhcc
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG----FAAALVDD-PLW--VMNTVPVEAKINTLGVIYERGL 523 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~gg----faa~l~~~-~v~--~mnv~~~~~~~~~l~~~~eRgl 523 (637)
|-.|...|.--.+ .+++. . +.-.|+|+|||+|- .|-.|.+. +-. -..|+.+|-++.+|..+.+. +
T Consensus 86 FfRd~~~f~~l~~---~llp~--~--~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~-~ 157 (274)
T 1af7_A 86 FFREAHHFPILAE---HARRR--H--GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG-I 157 (274)
T ss_dssp TTTTTTHHHHHHH---HHHHS--C--SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT-E
T ss_pred ccCChHHHHHHHH---HccCC--C--CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhc-C
Confidence 5556566654332 23332 1 23579999999997 55555543 210 02788999998999988753 2
Q ss_pred c-------------------------c--------------hhhccccccCCCC--CccceeeeccccccCCCCcCHHHH
Q 006633 524 I-------------------------G--------------TYQNWCEAMSTYP--RTYDLIHADSIFSLYKDRCEMEDV 562 (637)
Q Consensus 524 ~-------------------------~--------------~~~~wce~~~~yp--~t~Dl~H~~~lfs~~~~~c~~~~~ 562 (637)
. | ..||+.+ .+|| ..||+|-|.+++-... .-....+
T Consensus 158 y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~-~~~~~~v 234 (274)
T 1af7_A 158 YRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFD-KTTQEDI 234 (274)
T ss_dssp EEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSC-HHHHHHH
T ss_pred CchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCC-HHHHHHH
Confidence 1 0 1234444 2344 7899999988875443 2345789
Q ss_pred HHHHhhcccCCcEEEEEeC
Q 006633 563 LLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 563 l~e~dRiLrPgG~~i~~d~ 581 (637)
+-++-+.|+|||++++...
T Consensus 235 l~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 235 LRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp HHHHGGGEEEEEEEEECTT
T ss_pred HHHHHHHhCCCcEEEEEec
Confidence 9999999999999999643
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0029 Score=67.54 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
.+.++||+||+.|.|+..|++++..++.++...++... .....+.+...|...+..+.+.||+|+|-.+.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~----- 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL-----MDTGQVTWLREDGFKFRPTRSNISWMVCDMVE----- 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH-----HTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-----
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh-----ccCCCeEEEeCccccccCCCCCcCEEEEcCCC-----
Confidence 34599999999999999999997655555443333221 22346788888888877777889999996654
Q ss_pred CCHHHHHHHHHhcccCC---eEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 298 YADGLYLIEVDRVLRPG---GYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPG---G~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
++...+.-+.+.|..| +.++..-.+.. ...+.+......+.......++
T Consensus 281 -~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk---------~~~~~l~~~~~~i~~~l~~~g~ 332 (375)
T 4auk_A 281 -KPAKVAALMAQWLVNGWCRETIFNLKLPMK---------KRYEEVSHNLAYIQAQLDEHGI 332 (375)
T ss_dssp -CHHHHHHHHHHHHHTTSCSEEEEEEECCSS---------SHHHHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHhHHHHHHHHhccccceEEEEEEeccc---------chHHHHHHHHHHHHHHHHhcCc
Confidence 4555666666666555 54443322211 2334455555556666665554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=78.05 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=64.8
Q ss_pred CCEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHHcCCC---eEEEEeccccCC--CCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGVP---ALIGVMASIRLP--YPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~erg~~---~~~~~~d~~~Lp--fpd~sFDlV~~ 288 (637)
+.+|||++||+|.++..++.+ + |+++|+++..+.... +.+..+++. +.+...|+..+. ...+.||+|++
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~-~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMK-ENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHH-HHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 348999999999999999884 3 456655443322222 222234543 777777764431 12457999998
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.. +. ....++..+.+.|+|||.++++.
T Consensus 132 DP----~g--~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----FG--TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----Cc--CHHHHHHHHHHHhCCCCEEEEEe
Confidence 65 22 34568999999999999998875
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00014 Score=76.41 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=81.5
Q ss_pred ceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhhc-c-----cchhh-ccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERG-L-----IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRg-l-----~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|+++.+|++ .+-. .|+-+|..+.++.++.++= + +-+++ |-.+-...++ ++||+|-++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 44999999999999999987 4321 3444555556888777651 1 12222 2222223454 8999998864
Q ss_pred ccccCCC-CcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHHHH-HHhcCCceeEEe-ccC--CCCCCcceEEEEEe
Q 006633 549 IFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRDD--V--DILVKIKS-ITDGMEWEGRIA-DHE--NGPRQREKILFANK 619 (637)
Q Consensus 549 lfs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~~~-~~~~~~W~~~~~-~~e--~~~~~~~~~l~~~K 619 (637)
....+.. .-.-..++-++-|+|||||.+++.-. . +.+..+.+ +.+.+. .+.++ +.. .|......|++|.|
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl~As~ 246 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIILMGSD 246 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEEEEES
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEEEEEC
Confidence 3222211 11126889999999999999998521 1 22222222 233333 23332 211 22223467899988
Q ss_pred cCC
Q 006633 620 KYW 622 (637)
Q Consensus 620 ~~w 622 (637)
.-.
T Consensus 247 ~pl 249 (317)
T 3gjy_A 247 TEF 249 (317)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.9e-05 Score=74.35 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=61.0
Q ss_pred ceeEeeecccchhhhhhhcCCCe----EEEEeccCCCCcchhHHHHhh----cc-------cchhhccccccCCC-----
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPL----WVMNTVPVEAKINTLGVIYER----GL-------IGTYQNWCEAMSTY----- 537 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v----~~mnv~~~~~~~~~l~~~~eR----gl-------~~~~~~wce~~~~y----- 537 (637)
..+|||+|||.|.+++.|++..- =..+|+.+|.++..+..+.++ |+ +-+.+ .......
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~ 158 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH--KNIYQVNEEEKK 158 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE--CCGGGCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE--CChHhcccccCc
Confidence 56999999999999999876410 001445556666777777665 31 22221 1122222
Q ss_pred -CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 538 -PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 538 -p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+..||+|+++..+. .++-++-++|+|||.+++.-.
T Consensus 159 ~~~~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASAS---------ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBS---------SCCHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchH---------HHHHHHHHhcCCCcEEEEEEc
Confidence 27899999876654 245788999999999999744
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=7e-05 Score=80.15 Aligned_cols=122 Identities=19% Similarity=0.225 Sum_probs=78.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCC---CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY---PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~y---p~t~Dl~H~~ 547 (637)
..+|||+|||+|+|+.+|++. ..+|+.+|.++..+..+.+. |+ +.+++ |.-+.+... +.+||+|.++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 578999999999999999876 46778888877787777664 44 22222 111111111 4689999886
Q ss_pred cccccCCCC------cCHHHHHHHHhhcccCCcEEEEEeCH------HHHHHHHHHHhcCCceeEEe
Q 006633 548 SIFSLYKDR------CEMEDVLLEMDRILRPEGSVIIRDDV------DILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 548 ~lfs~~~~~------c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~~~~~~~~~~~~W~~~~~ 602 (637)
--....... -....++.++-|+|+|||.+++.... .....+++.+.....+..+.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 432111111 22357889999999999999997432 23455555666665555443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=7.8e-05 Score=79.26 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
....+|||+|||.|.++.+|+++ ++- ++-.|.+ .++..+.++.-+.... ...|.++|.. |+|.+..++-.+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~-~~~~~a~~~~~v~~~~--~D~~~~~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIK---GVNFDLP-HVISEAPQFPGVTHVG--GDMFKEVPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECH-HHHTTCCCCTTEEEEE--CCTTTCCCCC-SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCe---EEEecCH-HHHHhhhhcCCeEEEe--CCcCCCCCCC-CEEEehHHhccC
Confidence 45789999999999999999763 332 2223332 4444433332122221 1233466765 999988777655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+. +...+|-++-|+|||||+++|.|
T Consensus 273 ~d~-~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 273 SDQ-HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 432 44689999999999999999975
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00038 Score=78.19 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccc--CCCCCEEEEECCCCchHHHHHhhc-------CCEEEEcCccccHHHHHHHHHHcCC---CeEEE
Q 006633 202 DAYIDDIGKLINLK--DGSIRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGV---PALIG 269 (637)
Q Consensus 202 ~~~i~~L~~lL~~~--~g~~r~VLDIGCGtG~~a~~La~~-------~v~~vdisp~Dls~a~i~~A~erg~---~~~~~ 269 (637)
...++.+.+++... +..+.+|||.+||+|.+...++++ .+.++++.+....-+..+.. -.++ ...+.
T Consensus 203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~-l~gi~~~~~~I~ 281 (542)
T 3lkd_A 203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI-LHGVPIENQFLH 281 (542)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH-HTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH-HcCCCcCccceE
Confidence 44666777776532 224559999999999988777654 34556664433333332222 2344 35677
Q ss_pred EeccccC--C-CCCCCeeEEEeccccc-cCCcC--------------------CHHHHHHHHHhccc-CCeEEEEEeC
Q 006633 270 VMASIRL--P-YPSRAFDMAHCSRCLI-PWGQY--------------------ADGLYLIEVDRVLR-PGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~L--p-fpd~sFDlV~~s~~L~-h~~~~--------------------d~~~~L~ei~RvLK-PGG~Lvls~p 322 (637)
.+|+... | ++...||+|+++.-+. .|... ..-.++..+.+.|+ |||++.+..|
T Consensus 282 ~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 282 NADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp ESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred ecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 7887665 3 4567899999975442 12100 11248999999999 9999999877
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0005 Score=70.01 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=78.3
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh------cc----cchhhccccccCCCCCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER------GL----IGTYQNWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~~wce~~~~yp~t~Dl~H~ 546 (637)
..++|||+|||.|+++.++++.+ ..|+-+|..+.++.++.++ ++ +.+. ++.-..|+.+||+|-+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~---~~D~~~~~~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHA---KQLLDLDIKKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEE---SSGGGSCCCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEE---echHHHHHhhCCEEEE
Confidence 35799999999999999998874 4566666665677666543 11 1111 1211223388999987
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccCCCCC-CcceEEEEEec
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGPR-QREKILFANKK 620 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~~~~l~~~K~ 620 (637)
+. -+...++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+.. ....-|. +...+++|.|.
T Consensus 146 d~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~-~~~~vP~~g~~~~~~as~~ 216 (262)
T 2cmg_A 146 LQ--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP-FVAPLRILSNKGYIYASFK 216 (262)
T ss_dssp SS--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE-ECCTTCTTCCEEEEEEESS
T ss_pred CC--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE-EEEccCCCcccEEEEeeCC
Confidence 51 122347889999999999999962 123344444444443222322 2232232 23447788887
Q ss_pred C
Q 006633 621 Y 621 (637)
Q Consensus 621 ~ 621 (637)
+
T Consensus 217 ~ 217 (262)
T 2cmg_A 217 T 217 (262)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.48 E-value=5.2e-05 Score=77.14 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=52.7
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccc--cHHHHHHHHHHc----CC--CeEEEEeccccC-
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRD--THEAQVQFALER----GV--PALIGVMASIRL- 276 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~D--ls~a~i~~A~er----g~--~~~~~~~d~~~L- 276 (637)
+.+.+.... +.+|||+|||+|.++..|++.+ |+++|+++.. +-..+++.|+++ +. .+.+..+|...+
T Consensus 75 l~~a~~~~~--~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l 152 (258)
T 2r6z_A 75 IAKAVNHTA--HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM 152 (258)
T ss_dssp HHHHTTGGG--CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH
T ss_pred HHHHhCcCC--cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH
Confidence 444443333 3489999999999999999885 5556554400 000444444332 22 378888887663
Q ss_pred C-CCC--CCeeEEEecccccc
Q 006633 277 P-YPS--RAFDMAHCSRCLIP 294 (637)
Q Consensus 277 p-fpd--~sFDlV~~s~~L~h 294 (637)
+ +++ ++||+|++...+.+
T Consensus 153 ~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 153 PALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHHCCCSEEEECCCC--
T ss_pred HhhhccCCCccEEEECCCCCC
Confidence 3 444 78999999876644
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=5.7e-05 Score=77.02 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=63.1
Q ss_pred ceeEeeecccchhhhhhhcC--CCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCC----CCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVD--DPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY----PRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~y----p~t~Dl~ 544 (637)
..+|||+|||.|+++.+|++ .+- -.|+.+|.++..+..+.++ |+ +-+++ |. +.+... +..||+|
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADM-RKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH-HHHHHHHHHTTCCEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh-HhcchhhhhccccCCEE
Confidence 56899999999999988875 231 1345556666777776655 54 22222 11 112221 4689999
Q ss_pred eeccccccCC---------------CCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 545 HADSIFSLYK---------------DRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 545 H~~~lfs~~~---------------~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
-++--+|... ..-....+|-++-|+|||||.++++
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s 210 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS 210 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8873333211 0023468899999999999999996
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.6e-05 Score=74.85 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=60.0
Q ss_pred ceeEeeecccchhhhhhhcCC-Ce----EEEEeccCCCCcchhHHHHhhc---------c--cchhh-ccccccCCCC--
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PL----WVMNTVPVEAKINTLGVIYERG---------L--IGTYQ-NWCEAMSTYP-- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v----~~mnv~~~~~~~~~l~~~~eRg---------l--~~~~~-~wce~~~~yp-- 538 (637)
..+|||+|||.|.+++.|++. +. ..-.|+.+|.++..+..+.++. . +-+.+ |.. ..+|
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~ 161 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR---KGYPPN 161 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG---GCCGGG
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcc---cCCCcC
Confidence 568999999999999998763 10 0013445565556777766542 1 22222 222 2344
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
..||+|+++..+.. ++-++-|+|||||.+++.-.
T Consensus 162 ~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPD---------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHH---------HHHHHHHHhcCCCEEEEEEe
Confidence 68999998665532 34788999999999999753
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=79.56 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=76.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchh-h-ccccccCCCCCccceeeeccc-c
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTY-Q-NWCEAMSTYPRTYDLIHADSI-F 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~-~-~wce~~~~yp~t~Dl~H~~~l-f 550 (637)
..+|||++||+|+|+.+++..+-- |+.+|.++.++..+.++ |+-..+ + |..+.+..++..||+|.++-- |
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 468999999999999999887642 66778887788777654 442111 1 222222334545999998643 2
Q ss_pred ccCCC-----CcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCceeEE
Q 006633 551 SLYKD-----RCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 551 s~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~ 601 (637)
+..+. ......++.++-|+|+|||++++.. ..+....+++.+.....+..+
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i 353 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRV 353 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 21111 1133478888899999999999653 223445666666554444443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.38 E-value=2.7e-05 Score=77.81 Aligned_cols=102 Identities=12% Similarity=0.012 Sum_probs=56.1
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-cccc-ccCCCC----Cccce
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCE-AMSTYP----RTYDL 543 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce-~~~~yp----~t~Dl 543 (637)
...+|||+|||+|.++.+|+++.- ...|+.+|.++.++..+.++ |+ +-+++ |..+ -+..++ .+||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 356899999999999988876410 13566777777788877664 44 33333 2111 122344 58999
Q ss_pred eeeccccccCC---C---------CcCHHHHHHHHhhcccCCcEEEEE
Q 006633 544 IHADSIFSLYK---D---------RCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 544 ~H~~~lfs~~~---~---------~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|-++--|-... . ......++-++.|+|||||.+.+-
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99874432111 0 011123455666777776665443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00039 Score=70.47 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C--CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRL 276 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~--v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~L 276 (637)
..++.+.+.+...++. +|||||||+|.++. +... . ++++ |+++.+++.++++. .++.+..+|+..+
T Consensus 8 ~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~-l~~~~~~~v~av-----Eid~~~~~~a~~~~~~~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQ--AMVEIGPGLAALTE-PVGERLDQLTVI-----ELDRDLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHCCCTTC--CEEEECCTTTTTHH-HHHTTCSCEEEE-----CCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHhcCCCCcC--EEEEECCCCcHHHH-hhhCCCCeEEEE-----ECCHHHHHHHHHHhccCCceEEEECchhhC
Confidence 3566677777655544 89999999999999 7543 3 5555 44556777776653 2578888998888
Q ss_pred CCCC-----CCeeEEEecccc
Q 006633 277 PYPS-----RAFDMAHCSRCL 292 (637)
Q Consensus 277 pfpd-----~sFDlV~~s~~L 292 (637)
++++ +..|.|+++.-+
T Consensus 80 ~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 80 NFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp CHHHHHHHHTSCEEEEEECCT
T ss_pred CHHHhhcccCCceEEEECCCC
Confidence 7653 235788887643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00015 Score=76.15 Aligned_cols=143 Identities=11% Similarity=0.117 Sum_probs=87.9
Q ss_pred CCceeEeeecccchhhhhhhcCCCe----EEEEeccCCCCcchhHHHHh----hcc-cchhhccccccCCCC-Cccceee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPL----WVMNTVPVEAKINTLGVIYE----RGL-IGTYQNWCEAMSTYP-RTYDLIH 545 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v----~~mnv~~~~~~~~~l~~~~e----Rgl-~~~~~~wce~~~~yp-~t~Dl~H 545 (637)
....+|||.|||+|+|..++.+.-- -..+|..+|..+.++.++.. +|+ +.+++ +..+...+ ..||+|-
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~--~D~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVVI 206 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEE--CCCCCccccCCccEEE
Confidence 4578999999999999988765310 01467777777677777765 354 11221 23444444 7899999
Q ss_pred eccccccCCC--------------CcCHH-HHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccC
Q 006633 546 ADSIFSLYKD--------------RCEME-DVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 546 ~~~lfs~~~~--------------~c~~~-~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
++--|+.... .-+.. .++.++-+.|+|||.+++-- ..+....+++.+..-.|-..+.+..
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp 286 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 286 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCC
Confidence 9887754311 11122 47888999999999998864 2223456666554444533222211
Q ss_pred ----CCCCCcceEEEEEec
Q 006633 606 ----NGPRQREKILFANKK 620 (637)
Q Consensus 606 ----~~~~~~~~~l~~~K~ 620 (637)
.+.....-|+|.+|.
T Consensus 287 ~~~F~~~~~~~~i~vl~k~ 305 (344)
T 2f8l_A 287 ETLFKSEQARKSILILEKA 305 (344)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred hhhccCCCCceEEEEEECC
Confidence 222246778888884
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.35 E-value=9.5e-05 Score=75.40 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=62.1
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccH--HHHHHHHHHc----C---CCeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTH--EAQVQFALER----G---VPALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls--~a~i~~A~er----g---~~~~~~~~d~~~ 275 (637)
.+.+.+...++...+|||+|||+|..+..++.++ |++++.++.... ...++.+.++ + ..+.+...|...
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 3555665555422589999999999999999875 555555442111 1122222211 1 236777777655
Q ss_pred -CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCe
Q 006633 276 -LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGG 315 (637)
Q Consensus 276 -Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG 315 (637)
++.....||+|++...+ +.. ....++++..++||+.+
T Consensus 157 ~L~~~~~~fDvV~lDP~y-~~~--~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 157 ALTDITPRPQVVYLDPMF-PHK--QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HSTTCSSCCSEEEECCCC-CCC--CC-----HHHHHHHHHS
T ss_pred HHHhCcccCCEEEEcCCC-CCc--ccchHHHHHHHHHHHhh
Confidence 34323479999998877 333 23356777788888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 637 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 7e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 0.001 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 5/146 (3%)
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
++++I K ++ R +D CG L R V + + +
Sbjct: 28 DFVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGL-YLIEVDRVLRPGGYWILSG 321
+ + + FD I + D +V L+PGG +I
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 322 PPVNWESHWKGWNRTTEDLKSEQNGI 347
P W + + K E+ +
Sbjct: 146 P--CWFYGGRDGPVVWNEQKGEEKLV 169
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 39.7 bits (92), Expect = 5e-04
Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 20/164 (12%)
Query: 198 PRGADA-YIDDIGKLI---NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAP 248
R D +I L+ G ++ G G + +Y++ + V
Sbjct: 63 RRNTQIISEIDASYIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDE 120
Query: 249 RDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVD 308
+ +A + + + + I + +D IP + ++
Sbjct: 121 DNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD---IPDPWNH----VQKIA 173
Query: 309 RVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 352
+++PG P N++ K + +E + R
Sbjct: 174 SMMKPGSVATFYLP--NFDQSEKTVLSLSASGMHHLETVELMKR 215
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 2/140 (1%)
Query: 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261
+ D I + + +D CG + L + + ++ +
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80
Query: 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGL--YLIEVDRVLRPGGYWIL 319
I +R FD+ C + +D L Y V L+ GG +I
Sbjct: 81 SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
Query: 320 SGPPVNWESHWKGWNRTTED 339
S G N D
Sbjct: 141 DINSYYKLSQVLGNNDFNYD 160
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.9 bits (90), Expect = 0.001
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 18/164 (10%)
Query: 197 FPRGADAY----IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTH 252
R I ++++K+G IDTG G + A L + +
Sbjct: 80 MKRRTQIVYPKDSSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 137
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLR 312
E + A + +I++ S FD + + Y+ + L+
Sbjct: 138 EEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWN--YIDKCWEALK 195
Query: 313 PGGYWILSGPPVNWESHWKGWNRTTEDLK----SEQNGIETIAR 352
GG + P N T + L+ E++ R
Sbjct: 196 GGGRFATVCPTTNQ------VQETLKKLQELPFIRIEVWESLFR 233
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 637 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.67 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.63 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.59 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.59 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.55 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.54 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.51 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.49 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.48 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.48 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.47 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.47 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.45 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.44 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.42 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.41 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.39 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.39 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.38 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.38 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.35 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.32 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.27 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.26 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.25 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.22 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.17 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.16 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.15 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.15 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.09 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.08 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.06 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.01 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.0 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.99 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.99 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.99 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.98 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.97 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.96 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.95 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.93 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.91 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.86 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.86 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.84 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.77 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.76 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.74 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.74 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.73 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.72 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.72 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.71 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.7 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.68 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.67 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.63 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.63 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.63 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.56 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.54 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.54 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.51 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.5 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.49 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.47 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.46 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.43 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.43 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.43 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.42 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.41 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.41 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.39 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.34 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.33 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.23 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.22 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.21 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.18 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.17 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.15 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.13 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.1 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.1 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.08 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.07 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.06 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.02 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.02 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.98 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.98 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.95 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.94 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.93 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.9 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.84 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.8 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.79 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.74 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.68 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.66 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.61 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.45 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.43 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.35 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.33 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.28 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.25 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.19 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.14 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.13 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.1 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.09 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.06 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.02 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 96.97 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 96.96 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.88 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.84 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 96.84 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 96.83 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.75 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.73 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 96.68 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.67 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.67 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.63 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.58 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.54 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 96.47 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.46 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 96.41 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 96.4 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 96.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.3 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.27 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 96.25 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 96.16 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.14 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 95.99 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.96 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.88 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 95.84 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 95.79 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 95.71 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.66 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.53 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.48 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.42 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 95.34 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 94.87 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.84 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.69 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 94.67 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 94.35 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.35 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 94.13 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 93.5 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.44 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 93.39 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 92.82 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 92.68 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.5 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.48 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 92.36 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 91.51 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 90.95 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.73 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 90.5 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.09 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 90.04 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 89.87 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.6 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 89.55 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.23 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.08 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 87.93 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 87.66 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 87.46 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 87.39 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 86.46 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 86.06 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.09 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.62 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 84.3 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.22 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 83.95 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 82.98 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 82.96 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 80.8 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 80.77 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 80.58 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.67 E-value=8.7e-17 Score=156.85 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH-----cCCCeEEEEeccccCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMASIRLPYP 279 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e-----rg~~~~~~~~d~~~Lpfp 279 (637)
+.++.+.++++++. +|||||||+|.++..|++++..++++ |+++.+++.|++ ...++.+.+++...+|++
T Consensus 4 ~~~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~ 78 (231)
T d1vl5a_ 4 LAKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAF---DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 78 (231)
T ss_dssp HHHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCCEEEEE---ECCHHHHhhhhhccccccccccccccccccccccc
Confidence 34566777777766 99999999999999999986555444 455555555543 235688999999999999
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||+|+|..+++|+. ++..++.++.|+|||||++++..+
T Consensus 79 ~~~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp TTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccccC--CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999999999997777 899999999999999999999753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=2.8e-16 Score=154.57 Aligned_cols=112 Identities=19% Similarity=0.271 Sum_probs=91.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cC-CCeEEEEeccccCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RG-VPALIGVMASIRLPY 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg-~~~~~~~~d~~~Lpf 278 (637)
..+.+.+.++++++. +|||||||+|.++..|++++..++++ |+++.|++.|++ .+ .++.+.++|...+||
T Consensus 4 ~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gv---D~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~ 78 (234)
T d1xxla_ 4 SLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGV---DATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78 (234)
T ss_dssp HHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS
T ss_pred HHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEE---eCChhhhhhhhhhhcccccccccccccccccccc
Confidence 456677888888877 99999999999999999985444444 555556555543 33 358899999999999
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++||+|+|..+++|+. ++..+++++.|+|||||++++..+
T Consensus 79 ~~~~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 79 PDDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp CTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccceeeeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEc
Confidence 999999999999997766 899999999999999999999753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=6.9e-16 Score=148.99 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPY 278 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpf 278 (637)
..++.+..++...-....+|||||||+|.++..|++.+..++++ |+++.+++.|++ .+....+...++..+|+
T Consensus 22 ~~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~gi---D~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 22 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccc---cccccchhhhhhhhccccccccccccccccccc
Confidence 33444544443111123489999999999999999987655555 556666665553 35667888889999999
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++||+|+|..+++|+...+...+|+++.|+|||||.|++..+
T Consensus 99 ~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 99 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 99999999999999888644677899999999999999999864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=2.1e-15 Score=152.62 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=84.1
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeE
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lpfpd~sFDl 285 (637)
++.++. +|||||||+|.++..|+++ +..++++ |+++.+++.|+++ ++ .+.+..++...+|+++++||+
T Consensus 64 ~l~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCL---NIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDF 138 (282)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCC--EEEEeCCCCcHHHhhhhccCCcEEEEE---eccchhhhhhhcccccccccccccccccccccccccccccch
Confidence 444544 9999999999999999886 6544444 4455555555433 33 588999999999999999999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|..+++|+. ++..+|.++.|+|||||.|++..+
T Consensus 139 V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 139 IWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999998987 799999999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1.9e-15 Score=147.68 Aligned_cols=98 Identities=27% Similarity=0.387 Sum_probs=84.3
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc-ccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR-CLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~-~L~h~~~ 297 (637)
+.+|||+|||+|.++..|++.+..++++ |+++.+++.|++++... +..++...+|+++++||+|+|.. +++|+.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred CCEEEEECCCCchhcccccccceEEEEe---ecccccccccccccccc-cccccccccccccccccceeeecchhhhhh-
Confidence 4489999999999999999998777777 77888999999887554 45678999999999999999865 666655
Q ss_pred CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 298 YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++..+|+++.|+|||||.++++.+
T Consensus 118 -d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 -NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 899999999999999999999875
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=3.1e-15 Score=148.12 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~ 273 (637)
....++.|.+.+.+.+++ +|||||||+|.++..|+++ +..++++ |+++.+++.|+++ ++ .+.+..+|.
T Consensus 18 ~~~~~~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~Gv---D~s~~~~~~ar~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGI---DMSSLFTAQAKRRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEEE---ecccchhhHHHHHHHHhhccccchhhhhHH
Confidence 355677888998888876 9999999999999999876 6666666 6666777665543 44 378999998
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+ +++++||+|+|..+++|+. +...+++++.|+|||||++++..+
T Consensus 93 ~~~-~~~~~fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGY-VANEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTC-CCSSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhc-cccCceeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEec
Confidence 887 5789999999999998887 799999999999999999999865
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=1.3e-14 Score=139.35 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=94.3
Q ss_pred EEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCH
Q 006633 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYAD 300 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~ 300 (637)
+|||||||+|.++..+.+ ++++|+ ++.+++.|++++ +.+.+.+...+|+++++||+|+|+.+++|+. ++
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~~giD~-----s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~--d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--KIGVEP-----SERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD--DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--CEEEES-----CHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS--CH
T ss_pred eEEEECCCCcccccccce--EEEEeC-----Chhhcccccccc--ccccccccccccccccccccccccccccccc--cc
Confidence 799999999999888853 455544 567888888774 5788889999999999999999999998887 89
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCccc------cccCCCCchhhhHHhHhhHHHHHHHhceeee
Q 006633 301 GLYLIEVDRVLRPGGYWILSGPPVNWES------HWKGWNRTTEDLKSEQNGIETIARSLCWKKL 359 (637)
Q Consensus 301 ~~~L~ei~RvLKPGG~Lvls~pp~~w~~------~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v 359 (637)
..+++++.|+|||||.+++..+..+... ....+...........+++.++.++.+++.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999987543210 0000000011001123457778888888765
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=9.8e-15 Score=147.32 Aligned_cols=95 Identities=23% Similarity=0.380 Sum_probs=82.6
Q ss_pred CCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
..+.+|||||||+|.++..|++. +..++++ |+++.+++.|+++..++.+.++|...+|+++++||+|++..+++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEe---cchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence 33558999999999999999987 5676777 778889999998888899999999999999999999999876633
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
++|+.|+|||||+|+++.|.
T Consensus 160 ---------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ---------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp ---------HHHHHHHEEEEEEEEEEEEC
T ss_pred ---------HHHHHHHhCCCcEEEEEeeC
Confidence 47899999999999999874
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.7e-15 Score=144.24 Aligned_cols=136 Identities=13% Similarity=0.028 Sum_probs=95.8
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg-----~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..+|||||||+|.++..|+++ ...++.+ |+++.+++.|+++. ....+.++++..+++++++||+|++..++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFREVDMV---DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEE---ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCCEEEEe---ecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 458999999999999998765 3233344 55666766666542 24688899999999999999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+|+..++...++.++.++|||||.+++..+........ ...........+.+.++++..+|+.+.
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL---DDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE---ETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccc---ccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 99885345689999999999999999986422111111 011111111234577788888887665
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.49 E-value=1.9e-14 Score=144.27 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=95.6
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
...+|||+|||+|.++..|+.+ .|+++ |.++.+++.|+++. ..+.+.+.+...+++++++||+|+|..+
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~v-----D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEE-----ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEE-----cCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence 3459999999999999988765 24444 45667777776653 2367888899999999999999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
++|+.+++...+|+++.++|||||++++..+........ +......+....+.+++++++.+|+.+.
T Consensus 168 l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~--~d~~d~~~~rs~~~~~~l~~~aGf~ii~ 234 (254)
T d1xtpa_ 168 AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL--VDKEDSSLTRSDIHYKRLFNESGVRVVK 234 (254)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE--EETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred ccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce--ecccCCceeCCHHHHHHHHHHcCCEEEE
Confidence 999985345688999999999999999986422211111 1111111111234577788888887664
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=6.4e-14 Score=137.89 Aligned_cols=100 Identities=21% Similarity=0.314 Sum_probs=80.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecc-ccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSR-CLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~-~L~ 293 (637)
..+|||||||+|.++..|++++..++++ |+++.|++.|++ ++.++.+.++++..++++ ++||+|+|.. +++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~v~gv---D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYEVVGL---DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCccchhhcccceEEEEE---eeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 4589999999999999999997655555 556666666554 456789999999999987 5899999974 555
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+..++...+|+++.++|||||+|++..+
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 65443677999999999999999999865
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.48 E-value=7.9e-14 Score=136.37 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=103.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
+.+|||||||+|.++..|++++..++++ |+++.+++.|+++.. ++.+..++...+++ +++||+|+|..+++|+.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~gi---D~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEE---ESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEE---eCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-
Confidence 3379999999999999999886555555 667778888876643 47778888777775 58899999999998887
Q ss_pred CCHHHHHHHHH-hcccCCeEEEEEeCCCCcccc-----------ccCCCCch----hhhHHhHhhHHHHHHHhceeeecc
Q 006633 298 YADGLYLIEVD-RVLRPGGYWILSGPPVNWESH-----------WKGWNRTT----EDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 298 ~d~~~~L~ei~-RvLKPGG~Lvls~pp~~w~~~-----------~~~w~~t~----e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
++..+|.++. |+|||||.+++..|..+...+ ...+.... +......+.++++.++.+++.+..
T Consensus 96 -d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 96 -DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 8999999998 899999999999874432211 00000000 000112456888899999986543
Q ss_pred cCcEEEEeccCCC
Q 006633 362 KKDLAIWQKPTNH 374 (637)
Q Consensus 362 ~~~~aIWqKP~~~ 374 (637)
. .++-||..+
T Consensus 175 ~---~~~~kp~~~ 184 (225)
T d2p7ia1 175 S---GIFFKALAN 184 (225)
T ss_dssp E---EEEECCSCH
T ss_pred E---EEEeccccH
Confidence 2 345577653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.47 E-value=5.8e-14 Score=131.90 Aligned_cols=110 Identities=13% Similarity=0.036 Sum_probs=86.7
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-----------------CCeEEEE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----------------VPALIGV 270 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-----------------~~~~~~~ 270 (637)
....+.+.+++ +|||+|||+|..+.+|+++|..++++ |+++.+++.|+++. ....+..
T Consensus 12 ~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 12 YWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCCceEee---cccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 33444455544 99999999999999999999888887 88888988887652 2335666
Q ss_pred eccccCC-CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 271 MASIRLP-YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 271 ~d~~~Lp-fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+...++ ....+||+|++..+++|+..++...+++++.++|||||.+++...
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 6666665 345789999999999888764677899999999999999988753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.47 E-value=1.4e-13 Score=134.25 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEe
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GV--PALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~ 271 (637)
+...+.+..++......+.+|||||||+|..+..|++. +..++++ |+++.|++.|+++ +. ...+...
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~gi---D~S~~ml~~A~~~~~~~~~~~~~~~~~~ 99 (225)
T d1im8a_ 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGI---DNSQPMVERCRQHIAAYHSEIPVEILCN 99 (225)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEE---CSCHHHHHHHHHHHHTSCCSSCEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEe---CCCHHHHHHHHHHhHhhcccchhhhccc
Confidence 43444444444322223449999999999999998864 5555555 6677777777653 22 3455544
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. .+++...+|+|+|+.+++|+..++...+|+++.|+|||||.|++..+
T Consensus 100 d~--~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 100 DI--RHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp CT--TTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hh--hccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 44 45556789999999999887755888999999999999999999865
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.45 E-value=1.7e-13 Score=135.17 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLP 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lp 277 (637)
+...+.+.+.+.......++|||||||+|.++..|++++..++++ |++++|++.|++ .+.++.+..+|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~Gv---D~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~ 97 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAV---DLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEE---CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEee---ccchhhhhhccccccccCccceeeccchhhhc
Confidence 334455666665444445699999999999999999998766666 667777776654 3668899999998887
Q ss_pred CCCCCeeEEEec-cccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCS-RCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s-~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++ ++||+|+|. .++.|+.. ++...+|+++.++|||||.|++...
T Consensus 98 ~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 98 IN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 64 689999986 45555542 1567799999999999999998753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.44 E-value=2.4e-13 Score=130.11 Aligned_cols=99 Identities=16% Similarity=0.304 Sum_probs=78.6
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
++|||||||+|..+.+|++++..++.+ |+++.+++.++ +.+. .+.+...|...+++ +++||+|+|..+++|
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAW---DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccc---cCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 389999999999999999997655554 44555555433 3344 46788888888775 688999999999998
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++...+++++.++|+|||++++...
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8764667899999999999999999753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.5e-13 Score=129.74 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC------------------
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG------------------ 263 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg------------------ 263 (637)
..+++.+.+++....+ .+|||+|||+|..+.+|+++|..++++ |+++.+++.|.++.
T Consensus 31 ~~l~~~~~~~l~~~~~--~rvLd~GCG~G~~a~~LA~~G~~V~gv---D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSG--LRVFFPLCGKAVEMKWFADRGHSVVGV---EISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp HHHHHHHHHHHTTCCS--CEEEETTCTTCTHHHHHHHTTCEEEEE---CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred HHHHHHHHHhcCCCCC--CEEEEeCCCCcHHHHHHHhCCCcEEEE---eCCHHHHHHHHHHhhccccccchhccccccee
Confidence 3445556666665554 499999999999999999998887777 77888887776542
Q ss_pred ----CCeEEEEeccccCC-CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 264 ----VPALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 264 ----~~~~~~~~d~~~Lp-fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+.+.+.|...++ ...+.||+|+...+++|+.+++...++.++.++|||||++++...
T Consensus 106 ~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 34667777776664 567899999999999999876888999999999999999888754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.41 E-value=4.7e-13 Score=135.62 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~ 274 (637)
+.+++.+.+.+. ....+.+|||||||+|.++..|++. +..++++ |+++.+++.|+++ +.++.+...|..
T Consensus 12 ~d~l~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi---D~s~~~l~~a~~~~~~~~~~~~f~~~d~~ 87 (281)
T d2gh1a1 12 DDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT 87 (281)
T ss_dssp HHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ECCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEE---ecchhHhhhhhcccccccccccccccccc
Confidence 445555555432 1223458999999999999999874 3333333 4455555555433 456788889999
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++++ ++||+|+|+.+++|+. ++..+++++.++|||||.+++..|
T Consensus 88 ~~~~~-~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 88 EIELN-DKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TCCCS-SCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccc-CCceEEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 98876 5799999999998877 899999999999999999999876
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=3.6e-13 Score=135.17 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCCeEEEEe
Q 006633 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVM 271 (637)
Q Consensus 194 g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~ 271 (637)
|..|++|.....+.+.+.+......+.+|||+|||+|.++..+++.+ ++++|+++..+..+.. .+..++++..+...
T Consensus 96 g~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~-na~~n~~~~~~~~~ 174 (254)
T d2nxca1 96 GMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEG 174 (254)
T ss_dssp C-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEES
T ss_pred ccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHH-HHHHcCCceeEEec
Confidence 44466666666666666665433445599999999999999988874 5667777766654443 44556778888777
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHH
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 351 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la 351 (637)
+... .++.++||+|+++.... ....++.++.|+|||||+|++++.. ....+.+.+.+
T Consensus 175 d~~~-~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil-----------------~~~~~~v~~~~ 231 (254)
T d2nxca1 175 SLEA-ALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGIL-----------------KDRAPLVREAM 231 (254)
T ss_dssp CHHH-HGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEE-----------------GGGHHHHHHHH
T ss_pred cccc-cccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecc-----------------hhhHHHHHHHH
Confidence 7544 35678999999975442 4566889999999999999998641 11124566777
Q ss_pred HHhceeeec
Q 006633 352 RSLCWKKLI 360 (637)
Q Consensus 352 ~~l~w~~v~ 360 (637)
++.+|+.+.
T Consensus 232 ~~~Gf~~~~ 240 (254)
T d2nxca1 232 AGAGFRPLE 240 (254)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCEEEE
Confidence 888887654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=4.2e-13 Score=137.26 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=87.7
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCCC--eEEE
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGVP--ALIG 269 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~ 269 (637)
..+.....++.+.+.+.+.+|. +|||||||.|.++.+++++ ++.++++ ++++.|++.+++ .+.. +.+.
T Consensus 42 L~~Aq~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~gi---t~s~~q~~~a~~~~~~~~l~~~v~~~ 116 (291)
T d1kpia_ 42 LEEAQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGL---TLSENQYAHDKAMFDEVDSPRRKEVR 116 (291)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceeec---cchHHHHHHHHHHHHhhccchhhhhh
Confidence 3333445567777777777766 9999999999999999876 7776666 566666655543 3443 3444
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCc-------CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQ-------YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~-------~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..| .++++++||.|+|..+++|+.+ .+...+++++.|+|||||.+++..
T Consensus 117 ~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 117 IQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp ECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 333 4566789999999999999974 135799999999999999999975
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=8e-13 Score=134.36 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CCC--eEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~~--~~~~~~d~~ 274 (637)
...++.+.+.+.+.+|. +|||||||+|.++.+++++ +..++++ ++++.|++.|+++ ++. +.+...+..
T Consensus 38 ~~k~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~gi---~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGL---TLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEEe---cchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 34456666666666665 9999999999999999877 7666666 6666777666543 433 444444444
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+ +++||.|++..+++|+...+...+|+++.|+|||||.+++..
T Consensus 113 ~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 113 DF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 33 478999999999999985466899999999999999999964
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=9.9e-13 Score=134.05 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=90.9
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----C--CCeEEE
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G--VPALIG 269 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~ 269 (637)
..+.....++.+.+.+.+.+|. +|||||||.|.++.++++. ++.++++ .++..|++.|+++ + ..+.+.
T Consensus 43 L~eAQ~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~gi---t~s~~Q~~~a~~~~~~~g~~~~v~~~ 117 (285)
T d1kpga_ 43 LQEAQIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGL---TLSKNQANHVQQLVANSENLRSKRVL 117 (285)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEEE---eccHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3344455667777777777766 9999999999999998876 7766666 5666776666543 2 246677
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..|...++ ++||.|++..+++|+...+...+++++.|+|||||.+++..
T Consensus 118 ~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 118 LAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp ESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred Hhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 77766654 67999999999999975467899999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.35 E-value=8.5e-13 Score=131.08 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCCC-CCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPY-PSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lpf-pd~sFDlV~~s~ 290 (637)
+.+|||||||+|..+..+++.+. .++++ |+++.+++.|.++ + ..+.+.++|....++ .+++||+|+|..
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~Gi---D~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEE---ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEe---cCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 44999999999999999988753 34444 5555666666543 2 247788888877776 477899999999
Q ss_pred ccccCCc--CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQ--YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~--~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++|... ++...++.++.|+|||||+|+++.|
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9987753 1456899999999999999999875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=3.8e-12 Score=121.74 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=88.2
Q ss_pred cCCeeecCCC-CCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHH
Q 006633 184 QGDRFSFPGG-GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL 260 (637)
Q Consensus 184 ~g~~~~Fpg~-g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~ 260 (637)
.|..+.|... +.+.+.+.+...+.+.+.++..++. +|||+|||+|.++..+++.. ++++|+++..+..+..+...
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~ 96 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKL 96 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCCC--eEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHH
Confidence 4555555322 2233344444445566776655544 99999999999999999874 55565544333322222221
Q ss_pred Hc--CCCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 261 ER--GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 261 er--g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.. ...+.+...|... ++++++||+|+++..+++..+ ....++.++.++|||||.+++..
T Consensus 97 ~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 97 NNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKE-VLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCccceEEEEEcchhh-hhccCCceEEEEcccEEecch-hhhhHHHHHHHhcCcCcEEEEEE
Confidence 11 2346777777655 667899999999988854443 45789999999999999998864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.27 E-value=2e-11 Score=115.86 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lp 277 (637)
++....+...+...++. +|||+|||+|.++..+++.. |+++|+++..+..+..+ +.+.++ ++.+..+++...+
T Consensus 19 ~eir~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~gda~~~~ 95 (186)
T d1l3ia_ 19 MEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAPEAL 95 (186)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHHHHH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEECchhhcc
Confidence 44445666777666655 99999999999999999884 55555544333322222 223343 6788888988888
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++...||+|++..... +...+++++.+.|||||++++...
T Consensus 96 ~~~~~~D~v~~~~~~~-----~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp TTSCCEEEEEESCCTT-----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCcCEEEEeCccc-----cchHHHHHHHHHhCcCCEEEEEee
Confidence 8888999999986542 566799999999999999998754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.26 E-value=2.2e-11 Score=121.09 Aligned_cols=111 Identities=19% Similarity=0.302 Sum_probs=77.4
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcC-ccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFA-PRDTHEAQVQFALERGV--PALIGVMASIRLPYPSR 281 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdis-p~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~ 281 (637)
.+.+.++... .++|||||||+|.++..|+++ ++.++.++ +..+..+.. ...+.+. .+.+..+|... +.+ .
T Consensus 71 ~~~~~~d~~~--~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~-~~~~~~~~~rv~~~~~D~~~-~~~-~ 145 (253)
T d1tw3a2 71 APAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARS-YLKDEGLSDRVDVVEGDFFE-PLP-R 145 (253)
T ss_dssp HHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHH-HHHHTTCTTTEEEEECCTTS-CCS-S
T ss_pred HHHhhcCCcc--CCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHH-HHHHhhcccchhhccccchh-hcc-c
Confidence 4445554433 459999999999999999987 45444442 323333322 2223333 47787777643 223 5
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|+++.++|||.+++...+|+++.|+|||||.|++...
T Consensus 146 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 146 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 79999999999999854556889999999999999999864
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.1e-12 Score=129.21 Aligned_cols=148 Identities=13% Similarity=-0.023 Sum_probs=89.4
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCe------------
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPA------------ 266 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~------------ 266 (637)
+.+.+.+......+.+|||||||+|.++..++..+ |+++|+++ .+++.|+++ ....
T Consensus 39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~-----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTD-----RNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCH-----HHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCH-----HHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 33444444344446699999999999888777663 45555544 444444432 1100
Q ss_pred -------------------EEEE----eccccCCCCCCCeeEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEEEEe
Q 006633 267 -------------------LIGV----MASIRLPYPSRAFDMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 267 -------------------~~~~----~d~~~Lpfpd~sFDlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.... .+....++++++||+|++..+++|.... +...+++++.|+|||||+|++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 0111 1122346788999999999999888631 45679999999999999999987
Q ss_pred CCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 322 PPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 322 pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+........ +........-..+.++++.+..+|+.+.
T Consensus 194 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 194 TLRLPSYMV--GKREFSCVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp ESSCCEEEE--TTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred eccccccee--ccccccccCCCHHHHHHHHHHCCCEEEE
Confidence 532211100 0011011111234577788888887543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.1e-11 Score=125.66 Aligned_cols=115 Identities=18% Similarity=0.321 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC-----CeEEEEec
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-----PALIGVMA 272 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~-----~~~~~~~d 272 (637)
..+.+.+.++++..++ ++|||+|||+|.++..|++++..++++ |+++.|++.|+++ +. ...+..++
T Consensus 42 ~~~~~~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~g~~v~gv---D~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSV---DASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEESSCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhhcCC--CEEEEecCCCcHHHHHHHHcCCeeeec---cCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence 3445566667665554 499999999999999999997666655 6666777666543 22 22334443
Q ss_pred ccc----CCCCCCCeeEEEecc-ccccCCcC-----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIR----LPYPSRAFDMAHCSR-CLIPWGQY-----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~----Lpfpd~sFDlV~~s~-~L~h~~~~-----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
... +| +.++||+|+|.. ++.|+... +...+|+++.|+|||||.|++...
T Consensus 117 ~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 117 WLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 322 23 356899999864 67777531 466899999999999999999754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.5e-11 Score=123.41 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=71.6
Q ss_pred EEEEECCCCchHHHHHhhc--------CCEEEEcCccccHHHHHHHHHHcC------CCeE--EEEeccc------cCCC
Q 006633 221 TAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG------VPAL--IGVMASI------RLPY 278 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--------~v~~vdisp~Dls~a~i~~A~erg------~~~~--~~~~d~~------~Lpf 278 (637)
+|||||||+|.++..|++. .+.++++ |.++.+++.+.++. ..+. +...+.. ..++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~v---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV---EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEE---CCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEE---eCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 7999999999998877653 2233445 66777777766541 1222 3333222 2356
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++||+|+|..+++|+. ++..+|+++.++|||||++++..+
T Consensus 120 ~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 789999999999997776 899999999999999999999864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=8.1e-11 Score=118.34 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=83.3
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc--------CCCeEEEEecc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER--------GVPALIGVMAS 273 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er--------g~~~~~~~~d~ 273 (637)
+..|..++.+.+|. +|||+|||+|+++..|++. +-.++.+ |+++.+++.|+++ ..+..+...|.
T Consensus 85 ~s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~---d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEe---cCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 45677788888877 9999999999999999986 2334444 4455555555432 23678888899
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...++++++||.|++ +.+ ++..++.++.|+|||||.|++..|
T Consensus 160 ~~~~~~~~~fDaV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 160 ADSELPDGSVDRAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GGCCCCTTCEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccccccCCCcceEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEeC
Confidence 889999999999985 555 677899999999999999999877
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=4.5e-11 Score=116.39 Aligned_cols=108 Identities=11% Similarity=0.027 Sum_probs=78.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpf 278 (637)
....+.+.+.++++. +|||||||+|.++..|++. .|+++++++..+..+..+.......+..+...|....++
T Consensus 63 ~~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 63 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred hhHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence 345567777777766 9999999999999999875 266666655444433333322223467777788877777
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+++||.|++..++.+.+ .++.++|||||.+++..
T Consensus 141 ~~~~fD~I~~~~~~~~~p--------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEB
T ss_pred cccchhhhhhhccHHHhH--------HHHHHhcCCCcEEEEEE
Confidence 788999999999886655 35778899999999853
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.15 E-value=4e-11 Score=119.73 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=74.8
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHH----HHcCC--CeEEEEeccccCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA----LERGV--PALIGVMASIRLPY 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A----~erg~--~~~~~~~d~~~Lpf 278 (637)
.+.+.++..+ .++|||||||+|.++..|+++ +..++.+ |+. .++..+ .+.+. .+.+...+... +.
T Consensus 72 ~~~~~~d~~~--~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~---Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~ 144 (256)
T d1qzza2 72 APADAYDWSA--VRHVLDVGGGNGGMLAAIALRAPHLRGTLV---ELA-GPAERARRRFADAGLADRVTVAEGDFFK-PL 144 (256)
T ss_dssp HHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECH-HHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHhcCCCcc--CCEEEEECCCCCHHHHHHHHhhcCcEEEEe---cCh-HHHHHHHHHHhhcCCcceeeeeeeeccc-cc
Confidence 3444444333 459999999999999999987 4544444 332 222222 23333 35666665443 44
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ ..||+|++..+||+|.+++...+|+++.++|||||.|++.++
T Consensus 145 p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 145 P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred c-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 4 459999999999999864556889999999999999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.1e-11 Score=119.55 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~ 274 (637)
..+.+.+.+.+.. .+++|||||||+|.++..+++++ +++++ +++.+++.|+++ +..+.+...+..
T Consensus 40 ~~~~~~la~~~~~---~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id-----~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 111 (229)
T d1zx0a1 40 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPIDEHWIIE-----CNDGVFQRLRDWAPRQTHKVIPLKGLWE 111 (229)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHHTSCEEEEEEEE-----CCHHHHHHHHHHGGGCSSEEEEEESCHH
T ss_pred HHHHHHHHHhhcc---CCCeEEEeeccchHHHHHHHHcCCCeEEEeC-----CCHHHHHHHHHHhhhccccccccccccc
Confidence 4555556555532 24589999999999999999873 44454 455566666544 233445444433
Q ss_pred --cCCCCCCCeeEEEe-----ccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 275 --RLPYPSRAFDMAHC-----SRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 275 --~Lpfpd~sFDlV~~-----s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
..++++++||.|+. ...++|+. +...+++++.|+|||||.|++.
T Consensus 112 ~~~~~~~~~~fD~i~fD~~~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 112 DVAPTLPDGHFDGILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp HHGGGSCTTCEEEEEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccccceeeccccccccccccc--CHHHHHHHHHHHcCCCcEEEEE
Confidence 34678899999984 55555666 7889999999999999999885
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.09 E-value=8.8e-11 Score=113.74 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=73.7
Q ss_pred CEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEecccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L 292 (637)
..|||||||+|.++..|+++ + ++++|+.+..+..+.. .+.+.+. ++.+..+|+..+. ++++++|.|++.+..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~-~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHH-HHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 38999999999999999987 3 4455544433332222 2333444 6888989987775 889999999988766
Q ss_pred ccCCcCCH--------HHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQYAD--------GLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~d~--------~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+. .. ..++.++.|+|||||.|.+.+
T Consensus 110 -P~~k-~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 -PWPK-KRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCS-GGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -ccch-hhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7764 22 479999999999999999974
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=5.7e-11 Score=118.85 Aligned_cols=150 Identities=15% Similarity=0.033 Sum_probs=90.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CCC-----------
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVP----------- 265 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~~----------- 265 (637)
.++.+.+.++.....+.++||||||+|.+...++.. .|+++|+++ .+++.+++. ...
T Consensus 40 ~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~-----~~i~~~~~~~~~~~~~~d~~~~~~~~~ 114 (263)
T d2g72a1 40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE-----VNRQELGRWLQEEPGAFNWSMYSQHAC 114 (263)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH-----HHHHHHHHHHTTCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCH-----HHHHHHHHHHhcCcccccchhhhhhhh
Confidence 345566666555555679999999999887655544 356665554 444444321 000
Q ss_pred --------------------eEEEEeccc------cCCCCCCCeeEEEeccccccCCcC--CHHHHHHHHHhcccCCeEE
Q 006633 266 --------------------ALIGVMASI------RLPYPSRAFDMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYW 317 (637)
Q Consensus 266 --------------------~~~~~~d~~------~Lpfpd~sFDlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~L 317 (637)
......|.. ..+++.++||+|++.++++|.+.+ +...+++++.++|||||+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~l 194 (263)
T d2g72a1 115 LIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHL 194 (263)
T ss_dssp HHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEE
Confidence 011222221 223456789999999999888752 4567899999999999999
Q ss_pred EEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 318 ILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 318 vls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
++.++......... ......+.-..+.++++.+..+++.+.
T Consensus 195 i~~~~~~~~~~~~~--~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 195 LLIGALEESWYLAG--EARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp EEEEEESCCEEEET--TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEecccCCcccccC--CcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 99875322111000 010011112335577788888887653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.06 E-value=3.9e-10 Score=111.01 Aligned_cols=132 Identities=13% Similarity=0.101 Sum_probs=85.3
Q ss_pred hcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccC-CCCCCCe
Q 006633 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRL-PYPSRAF 283 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~L-pfpd~sF 283 (637)
+++.+|+ +|||+|||+|.++..|++. .|.++|+++. +++.+.++ ..+......+.... ++.+..+
T Consensus 70 l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~-----~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~ 142 (230)
T d1g8sa_ 70 MPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPR-----IMRELLDACAERENIIPILGDANKPQEYANIVE 142 (230)
T ss_dssp CCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH-----HHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHH-----HHHHHHHHHhhhcccceEEEeeccCcccccccc
Confidence 3455555 9999999999999999986 2566666554 44444332 23455555554433 3566777
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
|++++...++++. +...++.++.++|||||+++++.... ..++.. ......++..+..+..+|+.+.
T Consensus 143 ~v~~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~-----~~d~~~---~~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 143 KVDVIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKAR-----SIDVTK---DPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp CEEEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGG-----GTCSSS---CHHHHHHHHHHHHHHHTEEEEE
T ss_pred eeEEeeccccchH--HHHHHHHHHHHhcccCceEEEEeecc-----ccCCCC---CHHHHHHHHHHHHHHcCCEEEE
Confidence 8777766664444 78899999999999999999985311 111111 1233445566667777887664
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.6e-10 Score=113.44 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~L 276 (637)
+.|.+.|.+......+ .+|||||||+|.++..+++.| |++++.++... ...+.+.+.+ ..+.+...+...+
T Consensus 21 ~~y~~ai~~~~~~~~~--~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~--~a~~~~~~~~~~~~i~~~~~~~~~l 96 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY--QAMDIIRLNKLEDTITLIKGKIEEV 96 (311)
T ss_dssp HHHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH--HHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhccccCCc--CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH--HHHHHHHHhCCCccceEEEeeHHHh
Confidence 4555556555444444 489999999999999999875 55566554322 2222333333 3578888899999
Q ss_pred CCCCCCeeEEEeccccccCCcC-CHHHHHHHHHhcccCCeEEEE
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQY-ADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvl 319 (637)
++++.+||+|++....++...+ ..+.++....|+|||||.++-
T Consensus 97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9999999999997766554432 355778888999999999974
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=7.4e-10 Score=114.06 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L 276 (637)
+.|.+.|.+......+. +|||||||+|.++..+++++ |.+++.++ ......+.+.+++. .+.+...+...+
T Consensus 24 ~~y~~aI~~~~~~~~~~--~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~--~~~~a~~~~~~~~~~~~i~~i~~~~~~l 99 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS--IIEMAKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESST--HHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhccccCCcC--EEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH--HHHHHHHHHHHhCccccceEEEeehhhc
Confidence 34444454444433444 99999999999999998875 55666543 22223333444443 578888899999
Q ss_pred CCCCCCeeEEEeccccccCCcC-CHHHHHHHHHhcccCCeEEEE
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQY-ADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvl 319 (637)
++++.+||+|++..+.++...+ ....++.++.|+|||||.++=
T Consensus 100 ~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 9999999999997766444422 678899999999999999863
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.99 E-value=7.6e-10 Score=107.01 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred CEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCC--CCCCCeeEEEecccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L 292 (637)
..|||||||+|.++..+++. + ++++|+.+..+..+.. .+.+.+ .++.+..+|+..+. ++++++|.|++.+.-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~-~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHH-hhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 38999999999999999987 3 4555554433333322 223334 46888888887765 789999999987754
Q ss_pred ccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.. -...+|.++.|+|||||.|.+.+
T Consensus 112 -Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 77641 12579999999999999999874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1.5e-10 Score=110.57 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=74.2
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCcCH
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEM 559 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~ 559 (637)
+|||+|||+|.|+.+|.+. +.+|.++.++..+.+|++ -.+....+.++..+.+||+|++.+++.... +.
T Consensus 39 ~vLDiGcG~G~~~~~~~~~-------~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---CH
T ss_pred eEEEECCCCcccccccceE-------EEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---cc
Confidence 6999999999999998652 355777899999999986 444455566655569999999998888664 47
Q ss_pred HHHHHHHhhcccCCcEEEEEe
Q 006633 560 EDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 560 ~~~l~e~dRiLrPgG~~i~~d 580 (637)
..+|.|+.|+|||||.++|.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEe
Confidence 899999999999999999975
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.99 E-value=9.6e-10 Score=109.56 Aligned_cols=103 Identities=12% Similarity=0.161 Sum_probs=73.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-----C-CCeEEEEeccccCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G-VPALIGVMASIRLP 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-----g-~~~~~~~~d~~~Lp 277 (637)
.+...+.+.+|+ +|||+|||+|.++..|++. +-.++.+ |.++.+++.|+++ + .++.+...|....
T Consensus 76 ~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~v---D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 76 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVV---ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 149 (250)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEE---CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred HHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence 355666677766 9999999999999999875 3234444 4455555555543 1 3577887777654
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|++. .+ ++..++.++.++|||||.|++..|
T Consensus 150 ~~~~~fD~V~ld-----~p--~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 150 ISDQMYDAVIAD-----IP--DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CCSCCEEEEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred cccceeeeeeec-----CC--chHHHHHHHHHhcCCCceEEEEeC
Confidence 567899999863 33 566789999999999999999877
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=9.6e-10 Score=112.68 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L 276 (637)
+.|.+.|.+......+ .+|||||||+|.++..++++| |++++.++. .....+.+..++. .+.+...+...+
T Consensus 19 ~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~--~~~a~~~~~~n~~~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 19 LTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIECSSI--SDYAVKIVKANKLDHVVTIIKGKVEEV 94 (316)
T ss_dssp HHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH--HhhhhhHHHHhCCccccceEeccHHHc
Confidence 3444444332223343 489999999999999999874 566776542 2333344444443 478888999999
Q ss_pred CCCCCCeeEEEeccccccCCcC-CHHHHHHHHHhcccCCeEEEE
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQY-ADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvl 319 (637)
+++.++||+|++....++...+ ..+.++..+.|+|||||.++-
T Consensus 95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 9999999999997766444432 578899999999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.1e-10 Score=108.21 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=74.6
Q ss_pred HHHHHHHh--cccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEec
Q 006633 205 IDDIGKLI--NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMA 272 (637)
Q Consensus 205 i~~L~~lL--~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d 272 (637)
...+.++| .++++. +|||||||+|..++.|++. .|.++++.+..+..+...+.... .....+..+|
T Consensus 63 ~a~~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 63 HAYALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence 34566666 344544 9999999999999888875 35556554433333322222211 2356778888
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+++++.||.|++..++.+.+ .++.+.|||||.+++..
T Consensus 141 ~~~~~~~~~~fD~I~~~~~~~~ip--------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 141 GRMGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred cccccchhhhhhhhhhhcchhhcC--------HHHHhhcCCCcEEEEEE
Confidence 888888888999999999886655 45789999999999964
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3.7e-10 Score=116.70 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHH--HHHH-------cCC
Q 006633 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ--FALE-------RGV 264 (637)
Q Consensus 198 ~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~--~A~e-------rg~ 264 (637)
++-....++.+.+.+.+.+++ +|||||||+|.++..++.. .+.++++++..+..+..+ .+.. +..
T Consensus 133 ~e~~~~~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~ 210 (328)
T d1nw3a_ 133 GETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210 (328)
T ss_dssp CCCCHHHHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhhHHHHHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 333445666777777777766 9999999999999988765 245565554333322211 1111 234
Q ss_pred CeEEEEeccccCCCCCCCe--eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 265 PALIGVMASIRLPYPSRAF--DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 265 ~~~~~~~d~~~Lpfpd~sF--DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++.+..+|+..+++.+..| |+|+++. +.|+. +....|.++.|+|||||.++...
T Consensus 211 ~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~--~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 211 EYTLERGDFLSEEWRERIANTSVIFVNN-FAFGP--EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCH--HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ceEEEECcccccccccccCcceEEEEcc-eecch--HHHHHHHHHHHhCCCCcEEEEec
Confidence 6889999998888776655 5666654 44655 78899999999999999998763
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.95 E-value=6.2e-10 Score=107.95 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=70.1
Q ss_pred hcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCC---ee
Q 006633 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA---FD 284 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~s---FD 284 (637)
+++++++ +|||+|||+|..+..|++. .|+++|+++.++..+. +.+..+ .++.+...+....+..... +|
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER-NNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC-SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhcc-CCceEEEeeccCccccccccceEE
Confidence 3455555 9999999999999999875 2666766665444332 223333 3677777777665544444 45
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|++ .+.|.. +...++.++.|+|||||++++..
T Consensus 128 ~v~~--~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 128 LIYQ--DIAQKN--QIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEe--cccChh--hHHHHHHHHHHHhccCCeEEEEE
Confidence 5543 243444 68889999999999999999974
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.93 E-value=1.9e-09 Score=105.65 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=74.2
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRA 282 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpfpd~s 282 (637)
..+.+.+.+.++. +|||||||+|.+++.|++..-.++.+ |.++..++.|+++ ..++.+..+|......+.+.
T Consensus 60 a~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~ai---E~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 60 IFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSV---EINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccc---cccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence 3466777777766 99999999999999999885444444 3444455444433 45678888776554445678
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
||.|++..++.+.+ ..+.+.|||||.|++-
T Consensus 135 fD~Iiv~~a~~~ip--------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLL--------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhh--------HHHHHhcCCCCEEEEE
Confidence 99999998886555 3567889999999985
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=2.8e-09 Score=107.08 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=75.0
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~ 275 (637)
+..|..++.+.++. +|||+|||+|.++..|++. +..++++ |.++.+++.|+++ +. .+.+...|. .
T Consensus 92 ~~~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~v---D~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~ 165 (266)
T d1o54a_ 92 SSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAY---EKREEFAKLAESNLTKWGLIERVTIKVRDI-S 165 (266)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEE---CCCHHHHHHHHHHHHHTTCGGGEEEECCCG-G
T ss_pred HHHHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHhccccCcEEEeccc-c
Confidence 44677788888877 9999999999999999875 2333344 4444555544432 32 244444443 3
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++...||.|+. +.+ ++..++.++.++|||||.|++..|
T Consensus 166 ~~~~~~~~D~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 166 EGFDEKDVDALFL-----DVP--DPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp GCCSCCSEEEEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccccccceeeeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEeC
Confidence 4567788999874 555 788899999999999999999877
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=1.2e-09 Score=110.57 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCC
Q 006633 462 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST 536 (637)
Q Consensus 462 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~ 536 (637)
.+.+..++..++- ....+|||+|||.|+++.+++++ +. +|+.++.+++++..+.+| |+...+..-...+..
T Consensus 38 ~~k~~~~~~~l~l-~~g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~ 113 (280)
T d2fk8a1 38 YAKVDLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 113 (280)
T ss_dssp HHHHHHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 3445555555554 55888999999999999998865 54 444555555677665554 776555544455666
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+|.+||.|-+.++|.....+ +.+.+|-++.|+|+|||.++|.
T Consensus 114 ~~~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 114 FAEPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCCCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEE
T ss_pred hccchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEE
Confidence 78999999999998766543 6789999999999999999985
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.86 E-value=1.2e-09 Score=105.30 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=72.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
-.+|||+|||.|.|+.+|+++.- +|+.+|.+++++..+.++ |+ +..++.=.+.++ +| .+||+|+|..++
T Consensus 16 ~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~l 91 (231)
T d1vl5a_ 16 NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAA 91 (231)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCG
T ss_pred cCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccc-ccccccccccccccc
Confidence 66899999999999999988754 566778777888876543 44 233332233433 55 899999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +.+.+|-|+.|+|+|||+++|.+
T Consensus 92 ~~~~---d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 92 HHFP---NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 6543 56899999999999999999975
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.86 E-value=1.6e-09 Score=108.73 Aligned_cols=96 Identities=26% Similarity=0.299 Sum_probs=72.8
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~ 546 (637)
...+|||+|||+|+++.+|+++ +. +|+.+|.++.++..+.++ || +.+++ |+ +.+ ++| .+||+|.+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l-~~~~~sfD~V~~ 141 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEI-PCEDNSYDFIWS 141 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSC-SSCTTCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccc-ccc-cccccccchhhc
Confidence 3679999999999999999875 43 456677766788777765 44 33333 33 233 355 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..+|.... +.+.+|-|+.|+|||||.+++.|
T Consensus 142 ~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 142 QDAFLHSP---DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhcc---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 88876554 45899999999999999999974
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9.3e-09 Score=105.97 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=72.3
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHc----------------C
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALER----------------G 263 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~er----------------g 263 (637)
+..|..++.+.+|+ +|||+|||+|.++..|++. + |.++++ ++.+++.|+++ .
T Consensus 87 ~~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~-----~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 87 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEV-----RKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEES-----SHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred HHHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecC-----CHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 34577777888877 9999999999999999985 2 555555 44444444432 1
Q ss_pred CCeEEEEeccccCC--CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 264 VPALIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 264 ~~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++.+...|..... +++..||.|+. +++ ++..++.++.++|||||.|++..|
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEES
T ss_pred cceeEEecchhhcccccCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEeC
Confidence 24677777765543 46788999986 333 455689999999999999999877
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.84 E-value=1.2e-09 Score=106.38 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=74.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
...|||+|||+|.++..|+++. -+|+.+|.++.+++.+.++ |+ +..+..=.+.+ +|| .+||+|.|.++|
T Consensus 17 ~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l 92 (234)
T d1xxla_ 17 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIITCRYAA 92 (234)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEEEESCG
T ss_pred CCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccceeeeecee
Confidence 6679999999999999999874 3778889888899887554 33 33333222443 356 999999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
... .+.+.+|-|+.|+|||||++++.+
T Consensus 93 ~~~---~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 93 HHF---SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecc---cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 654 357999999999999999999974
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=1.8e-09 Score=105.39 Aligned_cols=119 Identities=17% Similarity=0.251 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh
Q 006633 454 DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ 528 (637)
Q Consensus 454 d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~ 528 (637)
....+...+..+.+++..... .....|||+|||+|.++..|++++. +|+.+|.+++++..+.++ |+ +-.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~-~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~ 94 (251)
T d1wzna1 19 RIERVKAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQ 94 (251)
T ss_dssp HHHTHHHHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchhee
Confidence 334444455556666655444 5577999999999999999998874 788889998999988876 33 22221
Q ss_pred -ccccccCCCCCccceeeec-cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 529 -NWCEAMSTYPRTYDLIHAD-SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 529 -~wce~~~~yp~t~Dl~H~~-~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|+ +.+ +++..||+|.|. ++|... +..+....|-++.|+|||||++||.
T Consensus 95 ~d~-~~l-~~~~~fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 95 GDV-LEI-AFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SCG-GGC-CCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhh-hhc-ccccccchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 21 222 356899999984 455543 3346779999999999999999985
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=1.8e-09 Score=105.97 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=72.0
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
..+|||+|||+|+++.+|+++ +.. |+.+|.++.++..+.++ |+ +...+ |+-+ + ..+.+||+|++.+
T Consensus 34 g~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~v~~~~ 108 (245)
T d1nkva_ 34 GTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VANEKCDVAACVG 108 (245)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCSSCEEEEEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-cccCceeEEEEEe
Confidence 568999999999999999764 654 35567777888887776 66 22222 3222 2 2358999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.... +.+.+|-||.|+|||||.++|.+
T Consensus 109 ~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 109 ATWIAG---GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp CGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhhccC---CHHHHHHHHHHHcCcCcEEEEEe
Confidence 877555 45899999999999999999975
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=3.6e-09 Score=100.97 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=80.3
Q ss_pred HHHHHHHhhhc-cCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cc-hhhccccccC--
Q 006633 461 RVTYYKSVDYQ-LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IG-TYQNWCEAMS-- 535 (637)
Q Consensus 461 ~v~~y~~~~~~-l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~-~~~~wce~~~-- 535 (637)
++.+.+.++.. |.. -.+|||+|||+|.++..|++.+. +|+.+|.+++++..+.++-- .+ .....|....
T Consensus 23 ~~~~~~~~~~~~l~~---~~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l 96 (226)
T d1ve3a1 23 RIETLEPLLMKYMKK---RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL 96 (226)
T ss_dssp HHHHHHHHHHHSCCS---CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC
T ss_pred HHHHHHHHHHHhcCC---CCEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccc
Confidence 34444444432 444 24689999999999999998875 57778888899988876532 01 1112233222
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
++| .+||+|.|.++|..... .++..+|-|+-|+|+|||.++|.+.
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCcCceEEEEecchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 244 99999999888876532 3577899999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=4.6e-09 Score=101.50 Aligned_cols=97 Identities=22% Similarity=0.377 Sum_probs=73.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-Cccceeeec-cccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHAD-SIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~-~lfs~~~~ 555 (637)
-..|||+|||+|.++..|++++. .|+.+|.++.++..+.+++..-.+..=.+.+ +|| .+||+|-|. +++....
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l-~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDL-PFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSC-CSCTTCEEEEEECSSHHHHCS-
T ss_pred CCEEEEECCCCchhcccccccce---EEEEeeccccccccccccccccccccccccc-ccccccccceeeecchhhhhh-
Confidence 34699999999999999999865 5677788889999999998743222112333 355 899998874 4554333
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+.+.+|-|+-|+|+|||.++++..
T Consensus 118 --d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 --NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 457899999999999999999853
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5.6e-09 Score=100.90 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc---cchhhccc---cccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWC---EAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~~wc---e~~~~yp~t~Dl~H~~~l 549 (637)
.....|||+|||.|.++.+|+++.. ..|..+|.+++++..+.++-- ...++-.| +.+..-+.+||+|.+.++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 3457899999999999999876643 245666777789999877632 11111122 234433589999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H-----HHHHHHHHHhcCCceeEEec
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D-----ILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~-----~~~~~~~~~~~~~W~~~~~~ 603 (637)
+....+. ++..+|-++-|+|||||.+++.|.. + ....++++++.--+++.-.+
T Consensus 137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 8765432 3567999999999999999997431 1 35778888887777765443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.74 E-value=3.6e-08 Score=96.57 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=69.2
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccc---cCCCCCCCee
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RLPYPSRAFD 284 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~---~Lpfpd~sFD 284 (637)
++.+|+ +|||+|||+|.++..|++. .|+++|+++..+..+. +.+.. ..+......+.. ..+.....+|
T Consensus 70 ~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~-~~~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 70 PIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEE-RRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSS-CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred ccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHh-cCCceEEEEECCCcccccccccceE
Confidence 455555 9999999999999999986 3677777665444332 22222 234555555542 3344557899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|++. +.|.. +...++.++.++|||||+++++.
T Consensus 146 ~i~~d--~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 146 VIFED--VAQPT--QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEE--ccccc--hHHHHHHHHHHhcccCCeEEEEE
Confidence 99874 32333 67889999999999999999974
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.73 E-value=4.3e-09 Score=104.56 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=91.8
Q ss_pred HHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCCC
Q 006633 464 YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPR 539 (637)
Q Consensus 464 ~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp~ 539 (637)
....++..+.. ....+|||+|||+|.++.+|+.+.. -+|..+|.++.++..+.++ ..+-.++.=.+.|..-+.
T Consensus 81 ~s~~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (254)
T d1xtpa_ 81 GSRNFIASLPG-HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSS
T ss_pred HHHHHHhhCCC-CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCC
Confidence 34455555554 5677899999999999999876522 1345556677899888766 222222211123332248
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCceeEEec
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------------ILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~ 603 (637)
+||+|.+..+|....+. ++..+|-++-|+|+|||+++|.|... ....++++++.--+++...+
T Consensus 158 ~fD~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 158 TYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp CEEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred ccceEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 99999998888765432 45688999999999999999975321 23567777776667665444
Q ss_pred c
Q 006633 604 H 604 (637)
Q Consensus 604 ~ 604 (637)
.
T Consensus 237 ~ 237 (254)
T d1xtpa_ 237 F 237 (254)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.72 E-value=2.6e-08 Score=96.85 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=76.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C--CEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYP 279 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~--v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lpfp 279 (637)
....+.+.+.+.++. +|||||||+|..++.|++. + +++++..+.....+..... +.+ .++.+..+|......+
T Consensus 66 ~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~-~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGCCGG
T ss_pred hHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHH-HcCCceeEEEECccccCCcc
Confidence 345677777777766 9999999999999988875 3 6667665432332222222 333 5688888887776666
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+.||.|++..+..+.+ ..+...|||||.+++-.
T Consensus 143 ~~pfD~Iiv~~a~~~ip--------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIP--------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred cCcceeEEeecccccCC--------HHHHHhcCCCCEEEEEE
Confidence 78899999998886555 34667899999999853
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=5.9e-09 Score=104.23 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCCCccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
.+..+|||+|||.|.+..+|++. ++ +++.+|.++.++..+.++.- +.....=.+.++.-+.+||+|.+...+.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~- 158 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC- 158 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence 56789999999999999999876 33 45666888889999888753 2211111233332349999998743332
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
-+-|+.|||||||++++...
T Consensus 159 ---------~~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 159 ---------KAEELARVVKPGGWVITATP 178 (268)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEE
T ss_pred ---------HHHHHHHHhCCCcEEEEEee
Confidence 15799999999999999853
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.71 E-value=4.5e-09 Score=101.67 Aligned_cols=100 Identities=9% Similarity=0.164 Sum_probs=81.7
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
...|||+|||+|..+.+|++. +- .+|+.+|.++.|++.+.++ +....++..+..+..+| ..+|++.+..+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 457999999999998887642 22 3788889999999999876 66777777777788887 88999999777
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+... +.-+...+|-||-|+|+|||.+|+.|
T Consensus 118 l~~~-~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 118 LQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GGGS-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 7554 33467899999999999999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=8.3e-09 Score=104.53 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=72.9
Q ss_pred CCceeEeeecccchhhhhhhcCC-C--eEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-P--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~--v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
+....|||+|||.||+|.++++. + |..+++.+.... ...+.+.+.|+.+-+.--+..+...|.+||-|=+.+.|..
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~-~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh 139 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQAN-HVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 139 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHH-HHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHH-HHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhh
Confidence 44788999999999999988654 4 455555553332 2334456667766554334455566889999888888875
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
..++ +...+|-++.|+|||||.+++.
T Consensus 140 ~~~~-~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 140 FGHE-RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp TCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred cCch-hHHHHHHHHHhhcCCCCcEEEE
Confidence 4432 4578999999999999999974
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=5.5e-08 Score=97.81 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=88.7
Q ss_pred CCCCCCcccHHH-HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH----HcCC
Q 006633 192 GGGTMFPRGADA-YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV 264 (637)
Q Consensus 192 g~g~~f~~g~~~-~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~----erg~ 264 (637)
+.+.+.|....+ .++.+...+. ....+|||+|||+|..+..|+.. +..++.+ |++..+++.|+ ..+.
T Consensus 84 ~~~VlIPRpeTE~lv~~~l~~~~---~~~~~vlDlGtGSG~I~i~la~~~p~~~v~av---Dis~~Al~~A~~Na~~~~~ 157 (274)
T d2b3ta1 84 SPATLIPRPDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAV---DRMPDAVSLAQRNAQHLAI 157 (274)
T ss_dssp CTTSCCCCTTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEE---CSSHHHHHHHHHHHHHHTC
T ss_pred eccccccccchhhhhhhHhhhhc---ccccceeeeehhhhHHHHHHHhhCCcceeeec---cchhHHHhHHHHHHHHhCc
Confidence 445555544333 4444444332 33458999999999999998875 3344333 44444444443 3344
Q ss_pred -CeEEEEeccccCCCCCCCeeEEEeccccccCCc------------C-----------CHHHHHHHHHhcccCCeEEEEE
Q 006633 265 -PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ------------Y-----------ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 265 -~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~------------~-----------d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++.+...|... +++++.||+|+|+.-..+-.+ . ....++.++.+.|+|||.+++.
T Consensus 158 ~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 158 KNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 47887777543 456789999999865433210 0 1235889999999999999997
Q ss_pred eCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeee
Q 006633 321 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 359 (637)
Q Consensus 321 ~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v 359 (637)
.... . .+.+.+++++.+|..+
T Consensus 237 ig~~----------q--------~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 237 HGWQ----------Q--------GEAVRQAFILAGYHDV 257 (274)
T ss_dssp CCSS----------C--------HHHHHHHHHHTTCTTC
T ss_pred ECch----------H--------HHHHHHHHHHCCCCeE
Confidence 4311 0 2346677777788544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.67 E-value=1.1e-08 Score=103.84 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHhhhccCCCCCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHH----HhhcccchhhccccccCCCCC
Q 006633 465 YKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAMSTYPR 539 (637)
Q Consensus 465 y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~----~eRgl~~~~~~wce~~~~yp~ 539 (637)
+..++..++- .....|||+|||.||++.+|++ .++ +|+.++.+.+++..+ .+.||....+.-+..+...+.
T Consensus 50 ~~~~~~~l~l-~~G~~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE 125 (291)
T ss_dssp HHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCC
T ss_pred HHHHHHhcCC-CCCCEEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccc
Confidence 3344444443 4577899999999999999975 465 334444444565554 455876555433344445568
Q ss_pred ccceeeeccccccCCCC------cCHHHHHHHHhhcccCCcEEEEE
Q 006633 540 TYDLIHADSIFSLYKDR------CEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~------c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+||.|=+.++|..-.+. -+.+.+|-++.|+|||||.+++.
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 99999998988865432 34679999999999999999985
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.63 E-value=4.4e-08 Score=95.64 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=71.7
Q ss_pred HHHHHHh--cccCCCCCEEEEECCCCchHHHHHhhc----C------CEEEEcCccccHHHHHHHHHHc----------C
Q 006633 206 DDIGKLI--NLKDGSIRTAIDTGCGVASWGAYLMSR----N------ILAVSFAPRDTHEAQVQFALER----------G 263 (637)
Q Consensus 206 ~~L~~lL--~~~~g~~r~VLDIGCGtG~~a~~La~~----~------v~~vdisp~Dls~a~i~~A~er----------g 263 (637)
..+.+++ .+.++. +|||||||+|.+++.|++. + |.+++..+ ..++.|.++ .
T Consensus 68 a~~l~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~-----~l~~~a~~~l~~~~~~~~~~ 140 (223)
T d1r18a_ 68 AFALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA-----ELVRRSKANLNTDDRSMLDS 140 (223)
T ss_dssp HHHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCH-----HHHHHHHHhhhhcchhhcCc
Confidence 3455665 345544 9999999999999888765 2 45555544 333333221 2
Q ss_pred CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.++.+...|......+.+.||.|++..++.+.+ ..+.+.|||||.+++..
T Consensus 141 ~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p--------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 141 GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPV 190 (223)
T ss_dssp TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred cEEEEEecccccccccccceeeEEEEeechhch--------HHHHHhcCCCcEEEEEE
Confidence 367888888877766778999999998885555 35678999999998853
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.63 E-value=1.5e-08 Score=98.91 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=74.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhhccccccCCC--CCccceeeec-cc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMSTY--PRTYDLIHAD-SI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~~wce~~~~y--p~t~Dl~H~~-~l 549 (637)
.++|||+|||+|.++..|++++. +|+.+|.++.||..+.+| |+ +..+ |..+..+ +++||+|=|. ++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~---~~d~~~~~~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLA---CQDISNLNINRKFDLITCCLDS 111 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEE---CCCGGGCCCSCCEEEEEECTTG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceee---ccchhhhcccccccccceeeee
Confidence 46899999999999999999875 677889999999998876 43 2222 2333333 5899987663 56
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|....+.-++..+|-++-|.|+|||.||+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 666666667788999999999999999984
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2.4e-08 Score=97.49 Aligned_cols=123 Identities=8% Similarity=0.038 Sum_probs=84.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-----c-------------chhhcc-------
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----I-------------GTYQNW------- 530 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----~-------------~~~~~w------- 530 (637)
.....|||+|||.|.++..+++... -+|+.+|-+++++..+.++-- + |.+..+
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3477899999999999988887754 478888888899988876511 0 000000
Q ss_pred ------------c--cccCCCC-CccceeeeccccccCC-CCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------
Q 006633 531 ------------C--EAMSTYP-RTYDLIHADSIFSLYK-DRCEMEDVLLEMDRILRPEGSVIIRDDVD----------- 583 (637)
Q Consensus 531 ------------c--e~~~~yp-~t~Dl~H~~~lfs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------- 583 (637)
. ....++| .+||+|-+..++.... .+-+...++-++-|+|||||++|+.+-..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~ 207 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 207 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence 0 1122344 8999998876665432 33355689999999999999999975221
Q ss_pred -----HHHHHHHHHhcCCceeE
Q 006633 584 -----ILVKIKSITDGMEWEGR 600 (637)
Q Consensus 584 -----~~~~~~~~~~~~~W~~~ 600 (637)
..+.|+++++.--+++.
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred cccCCCHHHHHHHHHHCCCEEE
Confidence 25677777777777654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.2e-08 Score=106.04 Aligned_cols=115 Identities=11% Similarity=0.071 Sum_probs=74.0
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHc----------
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALER---------- 262 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~er---------- 262 (637)
+++-.-.++..+.+.+.+.++. ++||||||+|.++..++.. + +.++++++ .+++.|+++
T Consensus 197 YGEl~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~-----~~i~~Ak~~~~e~~~~~~~ 269 (406)
T d1u2za_ 197 YGELLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMD-----DASDLTILQYEELKKRCKL 269 (406)
T ss_dssp CCCBCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHHHHHHhhhhhh
Confidence 3444455677788888877766 9999999999999999876 3 45555544 444444321
Q ss_pred -C---CCeEEE-EeccccCCCC---CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 263 -G---VPALIG-VMASIRLPYP---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 263 -g---~~~~~~-~~d~~~Lpfp---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+ ....+. ..+....++. -..+|+|+++. ++|.. +....|.++.|+|||||.++...
T Consensus 270 ~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~--~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 270 YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDE--DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCH--HHHHHHHHHHTTCCTTCEEEESS
T ss_pred hccccccceeeeeechhhccccccccccceEEEEec-ccCch--HHHHHHHHHHHhcCCCcEEEEec
Confidence 1 122222 1222222111 12467888754 43444 78899999999999999998864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.56 E-value=1.5e-08 Score=98.00 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=70.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cchhhccccccCCCCCccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~ 555 (637)
..+|||+|||+|.++..|++.+- .|+.+|.+++++..+.+|.- +-.++.=-+.+. .|++||+|.+.++|....
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC-
Confidence 34699999999999999988742 45666777789998877633 222221112222 369999999999987554
Q ss_pred CcCHHHHHHHH-hhcccCCcEEEEE
Q 006633 556 RCEMEDVLLEM-DRILRPEGSVIIR 579 (637)
Q Consensus 556 ~c~~~~~l~e~-dRiLrPgG~~i~~ 579 (637)
+...+|.|+ +|+|+|||.++|.
T Consensus 96 --d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 --DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhcCCCceEEEE
Confidence 458889998 5999999999997
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.54 E-value=1.3e-08 Score=100.27 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=72.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-------cchhh-ccccccCCC-CCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-------IGTYQ-NWCEAMSTY-PRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-------~~~~~-~wce~~~~y-p~t~Dl~H~~~ 548 (637)
..+|||+|||+|++...+++.+. -+|+.+|.++.++..+.+|-. +-.++ |. ...+.. ..+||+|.|.+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTSCCCCSSCEEEEEEES
T ss_pred cCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-hhhcccccccceEEEEcc
Confidence 57899999999999999987665 367788989899999988732 11111 11 112222 37999999876
Q ss_pred ccccC-CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++-.+ .+.-++..+|-++.|+|||||++|++-
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 66543 233456789999999999999999863
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.54 E-value=6.4e-08 Score=91.68 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=86.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccc--hhhccccccCCCC-Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG--TYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~--~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
....+|||+|||+|.++.+|++..= +|..+|.++..+..+.++ |+-. +-.-++..+..++ .+||+|-++.
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~ 127 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNP 127 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECC
T ss_pred CCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcc
Confidence 5578999999999999999987532 566667777788877653 3311 1112333444444 8999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
.|... .-.++.++-++.|+|+|||.+++.- .......+.+.++..-+++...-.. ..-+||-++|
T Consensus 128 p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 128 PIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp CSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred cEEec--chhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 76322 1124678899999999999987743 2223344444455444555543222 2457888777
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.7e-08 Score=96.91 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=75.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc------cchhhccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQNWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------~~~~~~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.++.+|++.+. -+|+.+|.++.++..+.++.- ....+++......+| .+||+|-.+.+.
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 56899999999999999998764 467777888789999887753 223345555556677 788887655554
Q ss_pred ccC--CCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 551 SLY--KDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~--~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+.+ .+.-+.+.++-|+-|+|||||.|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 433 33445678999999999999999885
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.50 E-value=4.8e-08 Score=98.06 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc-cchhhccccccCCCCCccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
.+..+|||+|||+|.++..|++. +. +|+.+|.++.++..+.++ |+ +-..+.-.+.+ +++..||+|++.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEe
Confidence 45678999999999999888763 22 345567777888887655 33 11122111222 356899999999
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++|.... +.+.+|-++-|+|||||++++.|
T Consensus 102 ~~l~~~~---d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 102 AFLLHMT---TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp SCGGGCS---SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhcCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 8887554 45899999999999999999976
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=2.5e-07 Score=86.32 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCCCeEEEEecccc--
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIR-- 275 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~-- 275 (637)
+...+.+.+++...-..+.+|||+|||+|.++...+.++..++.+ |.++.+++.++ ..+....+...+...
T Consensus 25 ~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~v---D~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~ 101 (171)
T d1ws6a1 25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLV---EKDPEAVRLLKENVRRTGLGARVVALPVEVFL 101 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEE---CCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH
T ss_pred HHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhc---ccCHHHHhhhhHHHHhhccccceeeeehhccc
Confidence 334455555554332234499999999999999999987666655 55555555544 335555555444322
Q ss_pred --CCCCCCCeeEEEeccccccCCcCCHHHHHHHH--HhcccCCeEEEEEeC
Q 006633 276 --LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEV--DRVLRPGGYWILSGP 322 (637)
Q Consensus 276 --Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei--~RvLKPGG~Lvls~p 322 (637)
......+||+|++..- +.. +....+.++ ..+|+|||.+++..+
T Consensus 102 ~~~~~~~~~fD~If~DPP---Y~~-~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 102 PEAKAQGERFTVAFMAPP---YAM-DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHTTCCEEEEEECCC---TTS-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ccccccCCccceeEEccc---ccc-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 2345678999999763 332 333344444 357999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.47 E-value=4.8e-08 Score=92.49 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=71.6
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhccccccC--CCCCccceeeeccccccC
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMS--TYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~--~yp~t~Dl~H~~~lfs~~ 553 (637)
+|||+|||.|.++.+|++++. .|+.+|.++.+++.+.+ .|+- .++-.+..+. .++.+||+|.|..+|...
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEEEEeeeeecC
Confidence 599999999999999999875 55667777778887543 3442 2222233333 346999999998888765
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.. -....+|-++-|+|+|||++++.
T Consensus 109 ~~-~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 109 EA-QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp CT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 33 36778999999999999999996
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.46 E-value=2.6e-07 Score=87.75 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=37.5
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+.+.||+|+|.++|+++.++...++++.+.+.|+|||+|++.
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3457899999999999988655678999999999999998875
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=2.2e-08 Score=100.73 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=72.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhh-------cccc--ccCCCCCccce
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-------NWCE--AMSTYPRTYDL 543 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~-------~wce--~~~~yp~t~Dl 543 (637)
..++|||+|||+|.++..|++.+. +|+.+|.++++|..+.++ +.....+ +|-. .-.++..+||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 357899999999999999999874 688889999999988665 3322221 1211 11223488999
Q ss_pred eeecc-ccccCC----CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 544 IHADS-IFSLYK----DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 544 ~H~~~-lfs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|-|.+ +|.... ..-++..+|-|+-|+|||||.+||.-
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 88743 455332 22346689999999999999999963
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.43 E-value=7.9e-08 Score=94.80 Aligned_cols=104 Identities=22% Similarity=0.335 Sum_probs=70.1
Q ss_pred ccCCCCCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHH----HHhhcccchhhccc-cccCCCCCccce
Q 006633 471 QLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGV----IYERGLIGTYQNWC-EAMSTYPRTYDL 543 (637)
Q Consensus 471 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~----~~eRgl~~~~~~wc-e~~~~yp~t~Dl 543 (637)
.+.. ...++|||+|||.|.++.+|+++ .+-+.- .|.+ .++.. +.+.|+..-+.--. ..|...|..||+
T Consensus 75 ~~d~-~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~ 149 (253)
T d1tw3a2 75 AYDW-TNVRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA 149 (253)
T ss_dssp HSCC-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECT-THHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred hcCC-ccCCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCH-HHHHHHHHHHHHhhcccchhhccccchhhcccchhh
Confidence 3445 66899999999999999999765 332221 2222 34443 44556633222111 235566789999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|.+..++-.+.+. +...+|-++-|+|||||.++|.|
T Consensus 150 v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 150 IILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 9998887665432 34578999999999999999975
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.43 E-value=2.4e-07 Score=91.45 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=75.1
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
+.+.+.++.. ...++|||||||+|.++..++++ ++.++-+ |+.. .++.+ .....+.+..+|... +.| ..
T Consensus 70 ~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~---Dlp~-vi~~~-~~~~ri~~~~gd~~~-~~p--~~ 140 (244)
T d1fp1d2 70 KRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYPLIKGINF---DLPQ-VIENA-PPLSGIEHVGGDMFA-SVP--QG 140 (244)
T ss_dssp HHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHH-HHTTC-CCCTTEEEEECCTTT-CCC--CE
T ss_pred HHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEe---cchh-hhhcc-CCCCCeEEecCCccc-ccc--cc
Confidence 3444444421 23469999999999999999987 5555544 4432 22111 112346777777542 444 35
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|++++.+++|+|.+++...+|+++.+.|+|||.+++..
T Consensus 141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999997667789999999999999999985
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.42 E-value=3.6e-08 Score=91.42 Aligned_cols=100 Identities=9% Similarity=-0.003 Sum_probs=72.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----c----------chh-hcccc-ccCCC--
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----I----------GTY-QNWCE-AMSTY-- 537 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~----------~~~-~~wce-~~~~y-- 537 (637)
.....|||+|||+|-.+.+|++++. .|+.+|.+++++..+.+|.= . +.. .-.+. .+...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 3477999999999999999999986 56677888899999988631 0 000 01111 22222
Q ss_pred C-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 538 P-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 538 p-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+ ..||+|.+.++|..... -+...++-+|-|+|+|||.+++.
T Consensus 96 ~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 2 68999998777764332 34578999999999999998885
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=1.3e-07 Score=93.93 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=86.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhccccc-cCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEA-MSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~-~~~yp-~t~Dl~H~~~lfs 551 (637)
..+|||+|||+|.++.++++.+- .|+.+|.++.++..+.+ .|+-..+. +.. ...+| .+||+|.|+-++.
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~--~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFL--EGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEE--ESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEE--eccccccccccccchhhhccccc
Confidence 46899999999999999988764 46677888788887775 34411111 111 22345 7899999854332
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
.+..++-++-|+|||||++|+++- .+....|.+.++...|+......++ .-..|+.+|
T Consensus 196 ------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~----~Wv~l~~~r 254 (254)
T d2nxca1 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEG----EWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET----TEEEEEEEC
T ss_pred ------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEEC----CEEEEEEeC
Confidence 256788899999999999999863 3355677888888888776543331 234555554
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.1e-07 Score=94.52 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=73.5
Q ss_pred hhccCCCCCceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhh-----cccchhhcccc-c----
Q 006633 469 DYQLAQPGRYRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYER-----GLIGTYQNWCE-A---- 533 (637)
Q Consensus 469 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eR-----gl~~~~~~wce-~---- 533 (637)
+..+.....--+|||+|||.|.+...|++. +-....++.+|.++.++..+.+| .+-.+--+|.. .
T Consensus 32 l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (280)
T d1jqea_ 32 IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEY 111 (280)
T ss_dssp TTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHH
T ss_pred HHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhh
Confidence 333444233447999999999997777542 11345567778887899888776 12111112221 1
Q ss_pred ----cCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 534 ----MSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 534 ----~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
....+ .+||+|+|.++|.... +++..|-+|.|+|+|||+++|.
T Consensus 112 ~~~~~~~~~~~~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 112 QSRMLEKKELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp HHHHTTSSSCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred cchhcccCCCCceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEE
Confidence 23344 8999999988877554 5689999999999999999886
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.39 E-value=1e-06 Score=87.63 Aligned_cols=121 Identities=11% Similarity=0.047 Sum_probs=76.3
Q ss_pred eecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC
Q 006633 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 188 ~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
|.+.-...+|-.+.......+.+.+ .++. +|||+|||+|.++..+++++ |+++|++|..+..+. +.+..+++
T Consensus 81 ~~~d~~~~~f~~~~~~er~ri~~~~--~~g~--~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~-~N~~~n~l 155 (260)
T d2frna1 81 YKLDVAKIMFSPANVKERVRMAKVA--KPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKV 155 (260)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHC--CTTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTC
T ss_pred EEeccccccEecCCHHHHHHHHhhc--CCcc--EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH-HHHHHhCC
Confidence 3333334445444444444555554 3444 99999999999999988774 445555443222211 22333344
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 265 --PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 265 --~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+.+..+|+..++ +.+.||.|++..- . ....++.++.++|++||.+.+.
T Consensus 156 ~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p-----~-~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 156 EDRMSAYNMDNRDFP-GENIADRILMGYV-----V-RTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp TTTEEEECSCTTTCC-CCSCEEEEEECCC-----S-SGGGGHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEEcchHHhc-cCCCCCEEEECCC-----C-chHHHHHHHHhhcCCCCEEEEE
Confidence 3677888877765 3578999987532 1 4456888999999999998765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=1.1e-06 Score=84.00 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
+-.+++|||+|||+|.++..++.++. .++.+ |+++.+++.|+++...+.+...|...++ +.||+|+++.-+
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~v---Did~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAF---DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEE---ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCCccccc---ccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 33466999999999999888887742 23344 4556777888887777889988887764 679999998744
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.7e-07 Score=91.52 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=81.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh--cccchh--------------------------
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGTY-------------------------- 527 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gl~~~~-------------------------- 527 (637)
...++|||+|||.|.+...++.+. ..+|+.+|-++++++.+..+ .-.+.+
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 457799999999998877666663 35888999999999988643 111111
Q ss_pred ---------hcccc--ccC---CCCCccceeeeccccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------
Q 006633 528 ---------QNWCE--AMS---TYPRTYDLIHADSIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDVD--------- 583 (637)
Q Consensus 528 ---------~~wce--~~~---~yp~t~Dl~H~~~lfs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~--------- 583 (637)
.|..+ .+. ..+..||+|-+..+++.. .++.++..+|-++-|+|||||++|+.+...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 01111 111 123689998875555432 355678899999999999999999974211
Q ss_pred -------HHHHHHHHHhcCCceeE
Q 006633 584 -------ILVKIKSITDGMEWEGR 600 (637)
Q Consensus 584 -------~~~~~~~~~~~~~W~~~ 600 (637)
..+.|+++++.---+++
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEE
Confidence 23566666666555543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=9.3e-07 Score=90.35 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=69.0
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEecccc----CCCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR----LPYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~----Lpfpd~sFDlV~~s~~ 291 (637)
+.+|||++||+|.++..++.. .|+++|+++..+..+..+ +..+++ ++.+...|... ++...++||+|++..-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEEN-ARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHH-HHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 459999999999999998765 466666655444433332 223454 57788777544 3445678999998532
Q ss_pred -cccCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 -LIPWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 -L~h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+..-... +...++..+.++|||||.|++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111110 234678899999999999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=4.5e-07 Score=87.12 Aligned_cols=116 Identities=9% Similarity=0.081 Sum_probs=76.4
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHH----Hhhcc--cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGL--IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgl--~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..|||+|||.|.+...|++. |= .|++.+|.+.+.+..+ .++|+ +-+++ |-..-+..+| .++|.+++...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 47999999999999999764 22 3667777766766654 45566 33333 2111122355 89998887443
Q ss_pred cccCC----CCcCH-HHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCC
Q 006633 550 FSLYK----DRCEM-EDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGME 596 (637)
Q Consensus 550 fs~~~----~~c~~-~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~~ 596 (637)
.-..+ .+..+ +.+|-++.|+|+|||.++| ||..+..+.+.+......
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 33222 12222 5899999999999999987 588888887777765433
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.22 E-value=8e-07 Score=85.31 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=80.3
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHH----hhcc--cchhhccccccC-CCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQNWCEAMS-TYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl--~~~~~~wce~~~-~yp-~t~Dl~H~~~ 548 (637)
-..|||+|||.|.+..+|++. |= .|++.+|.+.+.+..+. +.|+ |-+++.=.+.+. .+| .++|.||+
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~--~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i-- 107 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL-- 107 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE--
T ss_pred CCeEEEEeccCCHHHHHHHHHCCC--CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc--
Confidence 357999999999999999764 22 26677777666666554 4565 444442122233 356 89999987
Q ss_pred cccc-------CCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCceeE
Q 006633 549 IFSL-------YKDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 549 lfs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
.|.. .+.|=--+.+|-++.|+|+|||.++| ||..+..+.+.+......|...
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 3331 12222226899999999999999988 7888888777777666666544
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.21 E-value=3e-07 Score=91.04 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=69.8
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCC--C--eEEEEeccCCCCcchhHHHHhhcccchhhccc-cccCCCCCccceeee
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDD--P--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC-EAMSTYPRTYDLIHA 546 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wc-e~~~~yp~t~Dl~H~ 546 (637)
+.. ...++|||+|||.|.++.+|+++ . +.++.+ |... +...+.+.+.|+-.-..--. ..|...|..||++.+
T Consensus 77 ~d~-~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 77 YDW-SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp SCC-TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred CCC-ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 444 56899999999999999999875 2 333332 2111 12233344556633221111 345556788999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
..+|-.+.+. ....+|-++-|+|||||.++|.|.
T Consensus 154 ~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCcH-HHHHHHHHHHhhcCCcceeEEEEe
Confidence 8877655422 345789999999999999999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=8.1e-07 Score=85.85 Aligned_cols=122 Identities=10% Similarity=-0.030 Sum_probs=83.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-c-------------------hhhcccccc---
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-G-------------------TYQNWCEAM--- 534 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~-------------------~~~~wce~~--- 534 (637)
-..|||+|||.|-.+.+|++++. +|+.+|.++..+..+.++--. + .+.-.|..+
T Consensus 46 ~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 46 GLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 56899999999999999999986 678889988888777665210 0 000112222
Q ss_pred -CCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----H--------HHHHHHHHHhcCCceeEE
Q 006633 535 -STYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----D--------ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 535 -~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~--------~~~~~~~~~~~~~W~~~~ 601 (637)
...+.+||+|...++|-... .-+.+.++.+|-|+|||||++++.... . ....++++... .|++..
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred cccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence 22348999999877776543 235689999999999999998775210 0 23557777766 477665
Q ss_pred ecc
Q 006633 602 ADH 604 (637)
Q Consensus 602 ~~~ 604 (637)
.++
T Consensus 201 le~ 203 (229)
T d2bzga1 201 LEK 203 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=9.9e-07 Score=89.31 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=67.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcch---hHHHHhhcccc---hhhccccccCCCCCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINT---LGVIYERGLIG---TYQNWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~---l~~~~eRgl~~---~~~~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
..+|||+|||+|.++..+++.+- -.|..+|.++.+ ...+.+.|+.. +.+.-.+.+..-+..||+|-+..+++
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 56899999999999888877643 123333444333 34556666633 33322223322338999999877777
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.....-.++.++..++|+|||||.+|-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 666666778899999999999999985
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.17 E-value=3.7e-06 Score=85.98 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc----CCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR----LPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~----Lpfpd~sFDlV~~s 289 (637)
+.+|||+|||+|.++..++..+ |+++|+++..+..+.. .+..+++ .+.+...|... ++.....||+|++.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~-N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHH-HHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 3499999999999999998874 4555554433332222 2223454 46777777543 33456789999985
Q ss_pred cccccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-...-... +...++..+.++|||||.|+++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 422111100 234578889999999999999864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.15 E-value=6.4e-07 Score=81.67 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=63.7
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lpfpd~sFDlV~~s~~L 292 (637)
+.+|||+|||+|.++...+.+| ++.++.++..+.... +.+...+. .+.+...|... +....++||+|++..
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~-~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-- 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-- 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhh-hhhhhcccccchhhhcccccccccccccccceeEech--
Confidence 4599999999999999888885 455555432222111 12222233 36777777654 345578899999865
Q ss_pred ccCCcCCHHHHHHHHH--hcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVD--RVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~--RvLKPGG~Lvls~p 322 (637)
|+........+..+. ++|+|||.+++..+
T Consensus 92 -Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 -PYAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp -SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -hhccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 333213345566553 67999999999754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.13 E-value=1.1e-06 Score=84.49 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=83.8
Q ss_pred CCceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~yp~t~Dl~H~~~l 549 (637)
...-+|||+|||.|++..+|++. +- -|..+|.++.++..+.+ |+.+.....=++....|+..+|.+- -+
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd--~v 129 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD--LI 129 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE--EE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE--EE
Confidence 34679999999999999998763 11 24556666677766544 4444444322233444555555433 24
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------HHHHHHHHHH-HhcCCceeEEeccCCCCCCcceEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------VDILVKIKSI-TDGMEWEGRIADHENGPRQREKILFAN 618 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~-~~~~~W~~~~~~~e~~~~~~~~~l~~~ 618 (637)
|....+..+...+|.|+.|+|||||++++.+. ..+...+.+. ..++... ...+.+ |+.++-++|.-
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~-E~i~L~--P~~~~H~~v~~ 206 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIV-KHGSLM--PYHRDHIFIHA 206 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEE-EEEECT--TTCTTEEEEEE
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEE-EEEccC--CCccCcEEEEE
Confidence 54444445667899999999999999999742 2233333333 2333221 123333 66678888877
Q ss_pred ecC
Q 006633 619 KKY 621 (637)
Q Consensus 619 K~~ 621 (637)
+.|
T Consensus 207 ~r~ 209 (209)
T d1nt2a_ 207 YRF 209 (209)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.13 E-value=1.3e-06 Score=88.88 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=66.0
Q ss_pred ceeEeeecccchhhhhhhcCCC---eEEEEeccCCCCcchhHHHHhhcccchhhccc---cccCCCCCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDP---LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC---EAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~---v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wc---e~~~~yp~t~Dl~H~~~lfs 551 (637)
..+|||+|||+|.++-.+++.+ |+.+-..+ ........+...|+...+.-.+ +.+..-+..||+|-+.-+..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~--~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS--ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST--THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcH--HHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4689999999999887777654 43333222 1112344555567744332222 22322338999998876666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.......++.++-+++|+|+|||.+|-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 666667889999999999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=2.7e-06 Score=86.82 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=66.0
Q ss_pred ceeEeeecccchhhhhhhcCCCe-EEEEeccCCCCc---chhHHHHhhcccchhhccccccC--CCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKI---NTLGVIYERGLIGTYQNWCEAMS--TYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~---~~l~~~~eRgl~~~~~~wce~~~--~yp-~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.++..+++.+- -| ..+|.++ .....+.+.|+.....-.+.... .+| ..||+|-+.-++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V---~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHV---IGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEE---EEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 46899999999999888876642 22 2223331 23445566677432221222222 244 899999987777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVI 577 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i 577 (637)
......-.++.++.+++|+|+|||.+|
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 766666788999999999999999986
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.10 E-value=1.5e-05 Score=75.88 Aligned_cols=69 Identities=9% Similarity=0.034 Sum_probs=48.4
Q ss_pred CCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
.+.+|||+|||+|.++..++.++. .++.+ |+++.+++.+++ .+....+...|...+ +..||+|+++.-+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~v---di~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICV---EVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEE---cCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 456999999999999988888752 33333 444455555543 356777887776665 3569999998755
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.08 E-value=2.3e-06 Score=84.18 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.++|||||||+|.++..++++ +..++-+ |+.+ .++.+. ....+.+...|... +.+ .+|++++.++||+|.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dlp~-vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVF---DRPQ-VVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHH-HHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEe---cCHH-HHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEeecccCC
Confidence 458999999999999999987 4544444 4432 222221 12357787777654 333 479999999999999
Q ss_pred cCCHHHHHHHHHhcccCC---eEEEEEe
Q 006633 297 QYADGLYLIEVDRVLRPG---GYWILSG 321 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPG---G~Lvls~ 321 (637)
+++...+|+++.+.|+|| |.+++..
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 766678999999999999 7777764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=4.2e-06 Score=79.43 Aligned_cols=113 Identities=11% Similarity=0.122 Sum_probs=78.9
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccC--
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL-- 276 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~L-- 276 (637)
++.+.+++...++. .+||++||+|.++..++++ +..++++ |.++.+++.|.++ +..+.+...+...+
T Consensus 12 l~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~---D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~ 86 (192)
T d1m6ya2 12 VREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGI---DVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF 86 (192)
T ss_dssp HHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred HHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEe---echHHHHHHHHHhhccccccccchhHHHhhHHH
Confidence 44555666655544 9999999999999999886 4555555 6666777777665 33577777766554
Q ss_pred ---CCCCCCeeEEEeccccc--cCCcC-----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 ---PYPSRAFDMAHCSRCLI--PWGQY-----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 ---pfpd~sFDlV~~s~~L~--h~~~~-----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+..++||.|+.-..+. ++... .....|..+.++|+|||.+++...
T Consensus 87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 87 LLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 24568899998654331 11111 455789999999999999998754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.06 E-value=3.3e-06 Score=79.01 Aligned_cols=116 Identities=12% Similarity=0.189 Sum_probs=80.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhccccccCCCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~~~yp~t~Dl~H~~~ 548 (637)
.....|||+|||+|.++.+|+...- .|+.+|.+++++..+.++ |+ +-+++.-.+....=...||+|=+++
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 4577899999999999999987632 455667777888888764 44 2233311111111127899876643
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~ 600 (637)
. .-.++.++-++-+.|||||++++... .+....+.+.++...|+..
T Consensus 109 ~------~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 109 S------GGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp C------TTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred c------cccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 2 23568999999999999999999763 4566667777777766554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.02 E-value=2.8e-06 Score=82.83 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=80.7
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccc-hhhccccccCCC-CCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG-TYQNWCEAMSTY-PRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~-~~~~wce~~~~y-p~t~Dl~H~~~l 549 (637)
...-+|||+|||+|.++.+|++.. ---.|..+|.++.++..+.+ |+.+- +..|... ...| +.++|.+-+
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~-~~~~~~~~~~v~~i--- 147 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK-PQEYANIVEKVDVI--- 147 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC-GGGGTTTCCCEEEE---
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeecc-CcccccccceeEEe---
Confidence 457899999999999999998641 00123444544456665555 34433 3334333 3334 366665433
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------HHHHHHHHHHHhcCCceeE-EeccCCCCCCcceEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------VDILVKIKSITDGMEWEGR-IADHENGPRQREKILFA 617 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~~~~~~W~~~-~~~~e~~~~~~~~~l~~ 617 (637)
|.......+.+.++.|+.|+|||||+++|.+. ......+.+.++.-..+.. ..|. .|..++-+||.
T Consensus 148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL--~py~~~H~~vv 224 (230)
T d1g8sa_ 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI--EPFEKDHVMFV 224 (230)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC--TTTSTTEEEEE
T ss_pred eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC--CCCcCCeEEEE
Confidence 33333456678899999999999999999732 2344555555555445443 2233 35556665543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.02 E-value=6.9e-06 Score=83.76 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=69.7
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEecccc----CCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR----LPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~----Lpfpd~sFDlV~~ 288 (637)
+++|||+.||+|.++..++..+ |+++|+++..+..+..+... ++. ...+...|... +.-....||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~-n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA-NHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH-TTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHH-hcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 4499999999999998887653 67778877655555444433 333 46788777633 2224568999998
Q ss_pred ccc-c-------ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRC-L-------IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~-L-------~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
-.- + ..... +...++..+.++|+|||.|+++..
T Consensus 224 DPP~f~~~~~~~~~~~~-~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSK-DYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp CCCCC-----CCCCHHH-HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cChhhccchhHHHHHHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence 421 1 01111 345688899999999999999864
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.98 E-value=4.3e-06 Score=81.93 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=68.3
Q ss_pred CCEEEEECCCCchHHHHHhhc--CC--EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v--~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.++|||||||+|.++..++++ +. ++.|+.+. ++.+ .....+.+...|... +.|. .|.++...++++
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v------i~~~-~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV------IEDA-PSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT------TTTC-CCCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh------hhhc-ccCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 468999999999999999987 44 44555221 1111 122356777666533 4453 467788899999
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|.+++...+|+++.+.|+|||.+++...
T Consensus 152 ~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 152 WSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp SCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 9876788899999999999999999753
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=3.3e-05 Score=76.90 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCCCCCccc-HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCC--C
Q 006633 192 GGGTMFPRG-ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--P 265 (637)
Q Consensus 192 g~g~~f~~g-~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~--~ 265 (637)
+.+.+.|+. .+..++.+.+.+.... ..++||+|||+|..+..+++. .++++|+++..+.-+..+ |...+. .
T Consensus 85 ~~~vlIPRpeTE~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~N-a~~~~~~~~ 161 (271)
T d1nv8a_ 85 EEGVFVPRPETEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDR 161 (271)
T ss_dssp CTTSCCCCTTHHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTS
T ss_pred ecCccCchhhhhhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHH-HHHcCCCce
Confidence 344454443 3445565555554333 348999999999988888765 356666655433332222 223343 2
Q ss_pred eEEEEecccc-CCCCCCCeeEEEeccccccCCcC-------CHH----------HHH-HHHHhcccCCeEEEEEeC
Q 006633 266 ALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQY-------ADG----------LYL-IEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 266 ~~~~~~d~~~-Lpfpd~sFDlV~~s~~L~h~~~~-------d~~----------~~L-~ei~RvLKPGG~Lvls~p 322 (637)
..+...+... ++...+.||+|+|+.-.++-.+. ++. .++ +-+.+.|+|||.+++...
T Consensus 162 ~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 162 FFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp EEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred eEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4444444322 22234789999997643221100 111 122 225688999999999753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=2.2e-05 Score=73.46 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=75.8
Q ss_pred CCeeecCCCCCCCcccHHHHHHHHHHHhcc-cCCCCCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHH
Q 006633 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFAL 260 (637)
Q Consensus 185 g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~-~~g~~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~ 260 (637)
|..+..|.+... ....+...+.+..++.. -.+ .+|||++||+|.++...+.+|. +.++.+ ...++.++
T Consensus 12 g~~l~~~~~~~~-RPt~~~vre~lfn~l~~~~~~--~~vLDlfaGsG~~giealsrGa~~v~~VE~~-----~~a~~~~k 83 (183)
T d2fpoa1 12 GRKLPVPDSPGL-RPTTDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAAGATLIEMD-----RAVSQQLI 83 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEECSC-----HHHHHHHH
T ss_pred CCEecCCCCCCc-CcCcHHHHHHHHhhhhcccch--hhhhhhhccccceeeeEEecCcceeEEEEEe-----echhhHHH
Confidence 344555554322 22234444555555542 233 3899999999999999998864 444443 33333332
Q ss_pred ----HcCC-CeEEEEecccc-CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 261 ----ERGV-PALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 261 ----erg~-~~~~~~~d~~~-Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
..+. +..+...|+.. +......||+|++.. |+........+..+.+ +|+++|.+++..+
T Consensus 84 ~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 84 KNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PFRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHhhccccceeeeeecccccccccccccCEEEEcC---ccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2222 45666666443 334567899999987 4443256667777655 6999999999743
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=6.4e-05 Score=72.46 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=65.5
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CC-----CCCCCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-----YPSRAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lp-----fpd~sFDlV 286 (637)
++|||||||+|..+.++++. .+++++..+.....++. ...+.+. .+.+..+++.. ++ ...++||+|
T Consensus 61 k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~-~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 61 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHH-HHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 48999999999999999875 35556665533222222 2222332 36677766433 21 346789999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.. +... ....+++.+.+.|+|||.+++..
T Consensus 140 fiD----~dk~-~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 140 VVD----ADKE-NCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEC----SCST-THHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEe----CCHH-HHHHHHHHHHHHhcCCcEEEEeC
Confidence 975 3443 67778999999999999999974
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.93 E-value=7.8e-06 Score=78.68 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=61.9
Q ss_pred CEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC-C-----CCCCCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-----YPSRAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L-p-----fpd~sFDlV 286 (637)
++|||||||+|..+.+|++. + ++++++.+.....+...+ ...+. .+.+..++.... + +..+.||+|
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhccccccccee
Confidence 48999999999999999874 3 555565443222222222 23343 377777775432 2 456789999
Q ss_pred EeccccccCCcC-CHHHHHHHHHhcccCCeEEEEE
Q 006633 287 HCSRCLIPWGQY-ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 287 ~~s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+.- |+... .....+.+..++|||||.+++.
T Consensus 137 fiD----~~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 137 FLD----HWKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEC----SCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eec----ccccccccHHHHHHHhCccCCCcEEEEe
Confidence 975 33321 1234577888999999988775
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.90 E-value=1.3e-05 Score=77.85 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHH----hhcccc-hhhccccccCCC---CCccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIY----ERGLIG-TYQNWCEAMSTY---PRTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~----eRgl~~-~~~~wce~~~~y---p~t~D 542 (637)
...-+|||+|||.|+++.+|++. .|+.+ |-++.++..+. .++.+- +..|-. ....| +..+|
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aV-----D~s~~~l~~a~~~a~~~~~~~~i~~d~~-~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI-----EFSPRVLRELVPIVEERRNIVPILGDAT-KPEEYRALVPKVD 145 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE-----ESCHHHHHHHHHHHSSCTTEEEEECCTT-CGGGGTTTCCCEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEE-----eCcHHHHHHHHHHHHhcCCceEEEEECC-CcccccccccceE
Confidence 55889999999999999999863 24554 44445555443 344332 222221 12223 25677
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCceeE-EeccCCCCCCc
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEGR-IADHENGPRQR 611 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~~-~~~~e~~~~~~ 611 (637)
.|+++ ....-..+.++.++.|+|+|||+++|.. ..++...++++.+. .++.. ..+.+ |+.+
T Consensus 146 ~i~~d-----~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~--p~~~ 217 (227)
T d1g8aa_ 146 VIFED-----VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE--PYEK 217 (227)
T ss_dssp EEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--TTSS
T ss_pred EEEEE-----ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC--CCCC
Confidence 77652 1122234678999999999999999962 23455666666543 44443 33333 3333
Q ss_pred c-eEEEEEec
Q 006633 612 E-KILFANKK 620 (637)
Q Consensus 612 ~-~~l~~~K~ 620 (637)
+ .++|++|+
T Consensus 218 ~H~~vv~rK~ 227 (227)
T d1g8aa_ 218 DHALFVVRKT 227 (227)
T ss_dssp SEEEEEEECC
T ss_pred ceEEEEEEeC
Confidence 3 56677774
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.84 E-value=3.6e-05 Score=71.99 Aligned_cols=127 Identities=15% Similarity=0.069 Sum_probs=79.2
Q ss_pred CeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc
Q 006633 186 DRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER 262 (637)
Q Consensus 186 ~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er 262 (637)
..+.+|.+... ....+...+.+..++... -.+.+|||++||+|.++...+.+| ++.++. +...++.+.++
T Consensus 11 ~~l~~~~~~~~-RPt~~~vrealFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~-----~~~a~~~~~~N 83 (182)
T d2fhpa1 11 RRLKALDGDNT-RPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEK-----NFAALKVIKEN 83 (182)
T ss_dssp CBCCCCCCCSS-CCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHH
T ss_pred CEecCCCCCCc-CcCcHHHHHHHHHHHHHh-cCCCEEEEcccccccccceeeecchhHHHHHHH-----HHHHHHHHHHH
Confidence 34445444332 223344555666676522 234599999999999999999985 444444 33444433322
Q ss_pred ----CC--CeEEEEeccccC----CCCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 263 ----GV--PALIGVMASIRL----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 263 ----g~--~~~~~~~d~~~L----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
+. ...+...|+... .-....||+|++-. |+...+....+..+.. +|+++|.+++..+
T Consensus 84 ~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 84 IAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhhhcccccccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22 467777775432 12456799999876 4443356777888754 7999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.80 E-value=3.3e-06 Score=81.20 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred CCceeEeeecccchhhhhhhcCC---C--eEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC--Ccccee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---P--LWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP--RTYDLI 544 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~--v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp--~t~Dl~ 544 (637)
+...+|||+|||+|.+++.|++. . |+.. |..+.++..+.++ |+-.+..........+| ..||.|
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~i-----d~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I 148 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV-----EYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVI 148 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEE-----ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEe-----ecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhh
Confidence 44779999999999999888642 2 4333 4444555555543 33111112223444455 789999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++.+.+... .-++-|.|||||.+|+-
T Consensus 149 ~~~~~~~~~---------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 149 FVTVGVDEV---------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp EECSBBSCC---------CHHHHHHEEEEEEEEEE
T ss_pred hhhccHHHh---------HHHHHHhcCCCcEEEEE
Confidence 997665432 22455789999999984
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=9.8e-05 Score=72.42 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhccc---CCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCC--eEEEEec
Q 006633 202 DAYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMA 272 (637)
Q Consensus 202 ~~~i~~L~~lL~~~---~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d 272 (637)
..|+..+.+++... .....++||+|||+|..+..|+.+ .++++|+++..+.-+.... ...+.. +.+...+
T Consensus 42 ~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~-~~n~l~~~~~~~~~~ 120 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVP 120 (250)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHH-HHhCCCcceeeeeec
Confidence 34556666665422 233468999999999999988876 4555655443333332222 222332 4444333
Q ss_pred cccC------CCCCCCeeEEEecccccc
Q 006633 273 SIRL------PYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 273 ~~~L------pfpd~sFDlV~~s~~L~h 294 (637)
.... ...++.||+|+|+.-+++
T Consensus 121 ~~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 121 QKTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp TTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred cHHhhhhhhhhcccCceeEEEecCcccc
Confidence 2221 123568999999886643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.74 E-value=2.9e-05 Score=78.75 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=70.3
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC---CeEEEEeccccC---
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL--- 276 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~---~~~~~~~d~~~L--- 276 (637)
.+.+++.. ...+.+|||++||+|.++..++..+..++.+ |.++.+++.|+++ +. .+.+...|+...
T Consensus 122 ~~~~~~~~-~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~V---D~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~ 197 (309)
T d2igta1 122 WLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHV---DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR 197 (309)
T ss_dssp HHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH
T ss_pred HHHHHHhh-ccCCCeEEEecCCCcHHHHHHHhCCCeEEEE---eChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHH
Confidence 44444432 2234599999999999999999887666555 5566666555432 32 467887775432
Q ss_pred -CCCCCCeeEEEeccc-c------ccCC-cCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 -PYPSRAFDMAHCSRC-L------IPWG-QYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 -pfpd~sFDlV~~s~~-L------~h~~-~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+.||+|++..- + ..+. ..+...++..+.++|+|||.+++..
T Consensus 198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 223578999998421 1 0111 0034556778889999999766653
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.68 E-value=6.4e-05 Score=70.80 Aligned_cols=109 Identities=18% Similarity=0.239 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L 276 (637)
...++.+.+++....+ .+|||.|||+|.|+..+.++ .+.++++.+.... ......+...+....
T Consensus 5 ~~i~~~m~~l~~~~~~--~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCc--CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeeehhcc
Confidence 4456677777765554 49999999999998888764 3566777553221 112345555554443
Q ss_pred CCCCCCeeEEEeccccccCCcC--------------------------C-HHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQY--------------------------A-DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~--------------------------d-~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. ....||+|+++.-+...... + ...++..+.+.|+|||++++..|
T Consensus 74 ~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 74 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 3 45789999997654221100 0 23567889999999999999987
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.66 E-value=6.5e-05 Score=75.93 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCEEEEECCCCchHHHHHhhc---------CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---------~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
+.+|||.|||+|.+...+.++ .+.++|+++..+..+..... ..+....+...+.... .+...||+|+++
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-~~~~~fD~vi~N 195 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLAN-LLVDPVDVVISD 195 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhccccccc-cccccccccccC
Confidence 448999999999998887642 24556664433332222222 2345555655554332 356789999998
Q ss_pred cccccCCcC----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQY----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-+...... -...++..+.+.|+|||++++..|
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 755221110 122368889999999999999887
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.61 E-value=1.9e-05 Score=77.81 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=70.1
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCCCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
..+|||+|||.|+++.+|+.. .=- |...|.++.+++.+.++ +. +...+ |.++.+ ....||.|..
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~--~~~~fD~V~l 160 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI--SDQMYDAVIA 160 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--CSCCEEEEEE
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc--ccceeeeeee
Confidence 678999999999999888742 211 23335566788887764 33 23333 555432 2378999876
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCc
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEW 597 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W 597 (637)
+ --+...+|-++.|+|||||.+++.-. .+++.++.+.++.-.|
T Consensus 161 d--------~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 161 D--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM 204 (250)
T ss_dssp C--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred c--------CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence 2 22335789999999999999998754 4455555555544444
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=4e-05 Score=76.05 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=71.9
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cccchhh-ccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|+++.+|+.. .- .|...|.++.+++.+.++ |+...+. ........++ ..||.+..
T Consensus 104 G~~VLDiG~GsG~lt~~lA~~~~~~G---~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~-- 178 (266)
T d1o54a_ 104 GDRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL-- 178 (266)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE--
T ss_pred CCEEEECCCCCCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEe--
Confidence 779999999999999988642 21 133445555677776443 4433221 1111122344 67886554
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCce
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWE 598 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~ 598 (637)
+-.+...+|-++.|+|||||.+++-- ..+.+.++.+.++...|.
T Consensus 179 ------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 179 ------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp ------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 34677889999999999999998754 456666666666666674
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.43 E-value=0.00018 Score=69.93 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpf 278 (637)
+..++.+.+.+....+. +|||||||+|.++..|++.+..++.+ ++++..++...++. .++.+..+|+..+++
T Consensus 7 ~~i~~~iv~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~~v~av---E~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTAI---EIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCchHHHHHHHhCcCceEEE---eeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence 34567777777665555 99999999999999999885444444 33445555555443 458899999988887
Q ss_pred CCCCeeEEEecc
Q 006633 279 PSRAFDMAHCSR 290 (637)
Q Consensus 279 pd~sFDlV~~s~ 290 (637)
+......|+++.
T Consensus 82 ~~~~~~~vv~NL 93 (235)
T d1qama_ 82 PKNQSYKIFGNI 93 (235)
T ss_dssp CSSCCCEEEEEC
T ss_pred cccccceeeeee
Confidence 766555677765
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.35 E-value=0.00025 Score=70.52 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc---------------CCCeEEEEeccccCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER---------------GVPALIGVMASIRLPY 278 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er---------------g~~~~~~~~d~~~Lpf 278 (637)
...++||.||+|.|..+..+++.. +++++++ +..++.|++- ...+.+...|+...--
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD-----~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID-----EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC-----HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCC-----HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 345699999999999999988774 4555554 4455555431 2346777777543322
Q ss_pred CCCCeeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+++||+|+.-. ..+.... .-..+++.+.+.|+|||.+++-.
T Consensus 146 ~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 NNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp HCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 357899999733 2232210 23578999999999999998864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.33 E-value=0.00026 Score=68.48 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=65.2
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CC------CCCCCee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP------YPSRAFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lp------fpd~sFD 284 (637)
.++|||||+++|.-+.+|++. .+++++.++.....+. +...+.|. .+.+..+++.. ++ ...++||
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 348999999999999999864 3566666553222222 22223343 36666666432 22 1256899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.- ++.. ....+++.+.+.|+|||.+++..
T Consensus 139 ~iFiD----a~k~-~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVD----ADKD-NYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEEC----SCST-THHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEec----cchh-hhHHHHHHHHhhcCCCcEEEEcc
Confidence 99974 4444 67789999999999999999983
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=6.9e-05 Score=76.38 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=67.7
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCC----C-eEEEEeccCCCCcchhHHHHhh--------------c---ccchhh-
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIYER--------------G---LIGTYQ- 528 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~eR--------------g---l~~~~~- 528 (637)
|.+ ...|||+|||.|+++.+|+.. + |+. .|.++.++..+.+. + .+..+|
T Consensus 96 i~p---G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t-----~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~ 167 (324)
T d2b25a1 96 INP---GDTVLEAGSGSGGMSLFLSKAVGSQGRVIS-----FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 167 (324)
T ss_dssp CCT---TCEEEEECCTTSHHHHHHHHHHCTTCEEEE-----EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred CCC---CCEEEEecccccHHHHHHHHHhCCCcEEEE-----ecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence 555 668999999999999998752 2 433 35555666666542 1 122333
Q ss_pred ccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHh--cCCceeE
Q 006633 529 NWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITD--GMEWEGR 600 (637)
Q Consensus 529 ~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~--~~~W~~~ 600 (637)
|.++....++ ..||.|..+ --+-..+|-++-|+|||||.+++- -..+++.++-+.++ ++.|...
T Consensus 168 di~~~~~~~~~~~fD~V~LD--------~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVALD--------MLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp CTTCCC-------EEEEEEC--------SSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred chhhcccccCCCCcceEeec--------CcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 4444444444 678877641 112235788999999999999875 45555555555443 5678544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.00013 Score=73.99 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=77.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc--chhh----ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI--GTYQ----NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~--~~~~----~wce~~~~yp~t~Dl~H~~ 547 (637)
..+|||++||+|||+.+++.. ...|+.+|.++..+..+.+. |+- -+++ +|.+.+....++||+|-++
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 679999999999999998743 34677778887777776543 441 1111 2222333334789998875
Q ss_pred cc-cccCCC-----CcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCceeEEe
Q 006633 548 SI-FSLYKD-----RCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 548 ~l-fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
-= |+.-+. ......++..+-++|||||.+++.. ..+..+.|.+.+..-..+.++.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 32 221111 1123468888999999999999963 2334555666666666666544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.19 E-value=7.9e-05 Score=73.04 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC--EEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v--~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpf 278 (637)
.++.+.+.+...++. +|||||||+|.++..|++.+. +++++++ .+++.+.++. .++.+..+|+..+++
T Consensus 17 ii~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~-----~l~~~l~~~~~~~~n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 17 VLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTSIELDS-----HLFNLSSEKLKLNTRVTLIHQDILQFQF 89 (245)
T ss_dssp THHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEESSSSC-----SSSSSSSCTTTTCSEEEECCSCCTTTTC
T ss_pred HHHHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcCceeEeeecc-----cchhhhhhhhhhccchhhhhhhhhcccc
Confidence 456777777666554 899999999999999999854 4455544 3333333332 357888889988888
Q ss_pred CCCCeeEEEeccccccCC
Q 006633 279 PSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~ 296 (637)
+...++.|+++.-+ |+.
T Consensus 90 ~~~~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 90 PNKQRYKIVGNIPY-HLS 106 (245)
T ss_dssp CCSSEEEEEEECCS-SSC
T ss_pred ccceeeeEeeeeeh-hhh
Confidence 88888889888755 555
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.14 E-value=0.00033 Score=70.85 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----------CCCeEEEEeccccC-CCCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIRL-PYPSR 281 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----------g~~~~~~~~d~~~L-pfpd~ 281 (637)
...++||.||.|.|..+..+++. .++++++++ ..++.|++. ...+.+...|+... .-.++
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~-----~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 150 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-----ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEE 150 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-----HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCC
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH-----HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCC
Confidence 34569999999999999999876 356666654 444444322 24577777775442 22356
Q ss_pred CeeEEEeccccccCCcC------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 282 AFDMAHCSRCLIPWGQY------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.||+|+.-. ..++... .-..+++.+.+.|+|||.+++..
T Consensus 151 ~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 151 RYDVVIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp CEEEEEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccEEEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 799999633 1122210 23578999999999999998854
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.00018 Score=71.19 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=68.6
Q ss_pred CceeEeeecccchhhhhhhcCC----C-eEEEEeccCCCCcchhHHHHhh------cccchhhcccccc--CCCC-Cccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIYER------GLIGTYQNWCEAM--STYP-RTYD 542 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~eR------gl~~~~~~wce~~--~~yp-~t~D 542 (637)
...+|||+|||.|+++.+|+.. + |++ .|.++.+++.+.++ +....++..+..+ ..+| .+||
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~-----~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVIS-----YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEE-----ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEE-----ecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence 3779999999999999999753 2 333 35555788777652 1222222223222 3466 8999
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHH-hcCCce
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSIT-DGMEWE 598 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~-~~~~W~ 598 (637)
.|.. +-=+...++-++.|+|||||.+++-. ..+++.++-+.+ ..-.|.
T Consensus 171 aV~l--------dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 171 RAVL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp EEEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred eEEE--------ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 8765 11333578899999999999998854 454444444433 333463
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.0015 Score=66.26 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=78.9
Q ss_pred eEeecCCeeecCCCCCCCccc---HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHH
Q 006633 180 WVRFQGDRFSFPGGGTMFPRG---ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEA 254 (637)
Q Consensus 180 W~~~~g~~~~Fpg~g~~f~~g---~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a 254 (637)
|.+..|-.+.++ .+.+|... .+.+++.+.+++...++. +|||+-||+|.|+..|+++. |++++.++..+..+
T Consensus 174 ~~~~~g~~~~i~-p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~--~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A 250 (358)
T d1uwva2 174 WYDSNGLRLTFS-PRDFIQVNAGVNQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 250 (358)
T ss_dssp EEEETTEEEECC-SSSCCCSBHHHHHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHH
T ss_pred EEecCCEEEEEC-CchhhccchhhhhHHHHHHHHhhccCCCc--eEEEecccccccchhccccccEEEeccCcHHHHHHH
Confidence 344444344443 34454433 455556666666544444 89999999999999999874 56666654333322
Q ss_pred HHHHHHHcCC-CeEEEEeccccC----CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 255 QVQFALERGV-PALIGVMASIRL----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 255 ~i~~A~erg~-~~~~~~~d~~~L----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. .+..+++ ++.+...+.... +.....||+|+...--. -....+..+.+ ++|.-.++++..
T Consensus 251 ~~-na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~-----G~~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 251 QQ-NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA-----GAAGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp HH-HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT-----CCHHHHHHHHH-HCCSEEEEEESC
T ss_pred HH-hHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCc-----cHHHHHHHHHH-cCCCEEEEEeCC
Confidence 22 2334444 577777765442 23356799998754221 12246666665 378778888753
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=9.3e-05 Score=77.60 Aligned_cols=97 Identities=6% Similarity=0.018 Sum_probs=58.3
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc------------cchh-hccccccCCCC-----
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL------------IGTY-QNWCEAMSTYP----- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl------------~~~~-~~wce~~~~yp----- 538 (637)
..+|||+|||.|.+...++.. ++ -.|+.+|.++.++..+.++.- .+.. .+....|..-+
T Consensus 217 gd~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~ 294 (406)
T d1u2za_ 217 GDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 294 (406)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCEEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence 668999999999998877653 32 234556666677777766531 0000 01112222111
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 539 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 539 -~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
...|++.+++ +...-++...|.||-|+|||||.+|..+
T Consensus 295 ~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 295 IPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp GGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 1234444422 1122356788999999999999999865
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.06 E-value=0.0029 Score=58.49 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=66.8
Q ss_pred HHHHHHHHhcc-cCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHH----cCC---CeEEEEeccc
Q 006633 204 YIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGV---PALIGVMASI 274 (637)
Q Consensus 204 ~i~~L~~lL~~-~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~e----rg~---~~~~~~~d~~ 274 (637)
..+.+..++.. -.+. +|||+.||+|+++.+.+.+|. .++-+ |.+...++..++ -+. ...+...+..
T Consensus 30 vrealFn~l~~~~~~~--~vLDlFaGsG~~glEalSRGA~~v~fV---E~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~ 104 (183)
T d2ifta1 30 VKETLFNWLMPYIHQS--ECLDGFAGSGSLGFEALSRQAKKVTFL---ELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 104 (183)
T ss_dssp HHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred HHHHHHHHhhhhcccc--eEeecccCccceeeeeeeecceeeEEe---ecccchhhhHhhHHhhhccccccccccccccc
Confidence 34445555542 2333 899999999999999999975 23333 333333333222 122 2344443322
Q ss_pred ---cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 275 ---RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 275 ---~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
........||+|++-. |+........+..+.. +|+++|.+++..+
T Consensus 105 ~~l~~~~~~~~fDlIFlDP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 105 DFLKQPQNQPHFDVVFLDP---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHTTSCCSSCCEEEEEECC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccccCCcccEEEech---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 2233456799999977 4443245667777654 7999999999754
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.0021 Score=59.83 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=74.8
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCC-----C
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP-----Y 278 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lp-----f 278 (637)
++.+.+.+...++. .++|..+|.|..+..+++++..++.+ |..+.++..+.+.. ....+.......+. +
T Consensus 7 l~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viai---D~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 7 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGL---DQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEE---hhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 34455565555544 89999999999999999986555555 55556666666543 34566655544432 3
Q ss_pred CCCCeeEEEecccccc--CCcC-----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRCLIP--WGQY-----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h--~~~~-----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+.+|.|+.-..+.. +... .....|.....+|+|||.+++...
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 4567999997543321 1110 233478888999999999999864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=96.97 E-value=8.9e-05 Score=71.70 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=55.1
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc--c--cchhhccccccCCCC--Cccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG--L--IGTYQNWCEAMSTYP--RTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg--l--~~~~~~wce~~~~yp--~t~Dl~H~~~lf 550 (637)
...+|||+|||+|-++|.|++.. -.|+.++..+..+..+.++- . +-+.+ ...+..+| ..||.|++.+-.
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVVWATA 144 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEESSBB
T ss_pred ccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHhhcch
Confidence 36689999999999998886642 23444555555666665441 1 11221 12344566 569999985543
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.. ++. ++-+.|+|||.+|+-
T Consensus 145 ~~------ip~---~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 145 PT------LLC---KPYEQLKEGGIMILP 164 (224)
T ss_dssp SS------CCH---HHHHTEEEEEEEEEE
T ss_pred hh------hhH---HHHHhcCCCCEEEEE
Confidence 21 223 344679999999883
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=8e-05 Score=71.84 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=53.7
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc--c--chhhccc-cccCCCC--Cccce
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL--I--GTYQNWC-EAMSTYP--RTYDL 543 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl--~--~~~~~wc-e~~~~yp--~t~Dl 543 (637)
..+|||+|||+|-++|.|++. .-- |+.+|..+..+..+.++ ++ + ......+ ..+..+| ..||.
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g~---V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~ 153 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTGK---VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 153 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCce---EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence 678999999999887777542 211 22335444565555332 22 1 1111112 2334454 78999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|++.+... .+.-++-+.|+|||.+|+-
T Consensus 154 I~~~~~~~---------~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 154 IHVGAAAP---------VVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred hhhhcchh---------hcCHHHHhhcCCCcEEEEE
Confidence 99865543 2334566899999999984
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.88 E-value=0.0048 Score=59.70 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=71.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHH-HHcCC-CeEEEEeccccCCC---CCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFA-LERGV-PALIGVMASIRLPY---PSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A-~erg~-~~~~~~~d~~~Lpf---pd~sFDlV~~s 289 (637)
..+++|||+|.|.-+.-|+-. .++.++-.. -..+.++.+ .+-+. ++.+....++.+.. ....||+|+|-
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~--KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN--KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchH--HHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 458999999999776666532 344454422 122223322 23344 45555555554432 24679999986
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeee
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 359 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v 359 (637)
.+- ....++.-+...|++||.+++.-. ....++.++.+...+.++++..
T Consensus 149 Ava------~l~~ll~~~~~~l~~~g~~i~~KG---------------~~~~~El~~a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 149 AVA------RLSVLSELCLPLVKKNGLFVALKA---------------ASAEEELNAGKKAITTLGGELE 197 (239)
T ss_dssp CCS------CHHHHHHHHGGGEEEEEEEEEEEC---------------C-CHHHHHHHHHHHHHTTEEEE
T ss_pred hhh------CHHHHHHHHhhhcccCCEEEEECC---------------CChHHHHHHHHHHHHHcCCEEE
Confidence 433 677899999999999999998622 1123334445556666666543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.84 E-value=0.0039 Score=62.02 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC--CCCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSR 281 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L--pfpd~ 281 (637)
...++||=||-|.|..+..+++. . ++++++++ ..++.+++- ...+.+...|.... ...++
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~-----~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~ 153 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK-----MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEG 153 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTT
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCH-----HHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcccc
Confidence 44679999999999999999987 3 55666644 444444331 34577777775432 23457
Q ss_pred CeeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.||+|+.-. ..+.... ....+++.+.+.|+|||.+++-..
T Consensus 154 ~yDvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 154 SYDAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp CEEEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CccEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 899999732 2222210 245789999999999999999754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00046 Score=68.50 Aligned_cols=131 Identities=12% Similarity=0.255 Sum_probs=83.9
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
-+|||+|||+|..|.+|+.. |- ..|+.+|-++..+.++.+ -|+ +.+++ ||-+ ..+ ..||+|=++-=
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSNPP 184 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEECCC
T ss_pred cceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc---ccCCCceeEEEecch
Confidence 45999999999999988653 22 256667777666666543 233 44444 5544 344 68999877522
Q ss_pred cc------------cCCCC----------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCcee-E-EeccC
Q 006633 550 FS------------LYKDR----------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEG-R-IADHE 605 (637)
Q Consensus 550 fs------------~~~~~----------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~-~-~~~~e 605 (637)
+= .|..+ -.+..++-+..+.|+|||++++=-..+....+.++++...|.. . ..|..
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 264 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCC
Confidence 10 01100 1123688888999999999999543344577888888888853 2 33332
Q ss_pred CCCCCcceEEEEE
Q 006633 606 NGPRQREKILFAN 618 (637)
Q Consensus 606 ~~~~~~~~~l~~~ 618 (637)
+.+++++++
T Consensus 265 ----g~~R~v~~r 273 (274)
T d2b3ta1 265 ----DNERVTLGR 273 (274)
T ss_dssp ----SSEEEEEEE
T ss_pred ----CCceEEEEe
Confidence 577888875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=96.83 E-value=0.00065 Score=68.68 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=67.8
Q ss_pred ceeEeeecccchhhhhhhcCCCe-EEEEeccCCCCcchhHHHHh----hcccchhh--------ccccccCCCCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVIYE----RGLIGTYQ--------NWCEAMSTYPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~--------~wce~~~~yp~t~Dl~ 544 (637)
.++|||+.||+|||+-+++..+- .|.+| |.++..+..+.+ .|+=..-| +|.+.+..-.+.||+|
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 57899999999999977655443 34444 444344544433 24411111 2222222234689998
Q ss_pred eecc-ccccCCC-C----cCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCceeEE
Q 006633 545 HADS-IFSLYKD-R----CEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 545 H~~~-lfs~~~~-~----c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~ 601 (637)
=+|= -|+..+. . -+...++...-++|+|||.++++- ..+....|.+.+..-.+....
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~ 290 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 7641 1332111 1 123467788889999999999963 233445555655555555443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0028 Score=58.66 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC----
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---- 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp---- 277 (637)
+|.+...+- ..+.+|||+||+.|+|+.++.++ .+.++|+.+.+ ......+...+.....
T Consensus 12 EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~ 79 (180)
T d1ej0a_ 12 EIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHH
T ss_pred HHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchhhhh
Confidence 444444432 22448999999999999998875 25566664421 2234556655543311
Q ss_pred ----CCCCCeeEEEeccccccCCcC----------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 ----YPSRAFDMAHCSRCLIPWGQY----------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 ----fpd~sFDlV~~s~~L~h~~~~----------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.....||+|+|-.+. ..... -....+.-+.++||+||.|++-..
T Consensus 80 ~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 80 LLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 235679999996554 22211 111356667899999999999753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.0034 Score=61.93 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEE
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIR-LPYPSRAFDMAH 287 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~-Lpfpd~sFDlV~ 287 (637)
...++||-||-|.|..++.+++. .++++++++.-+..+..-+.. .....+.+...|+.. +.-.++.||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 34569999999999999999986 356677755333322221111 112457777777543 223457899999
Q ss_pred eccccccCCcC---CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 CSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-.. .+.... ....+++.+.+.|+|||.++.-..
T Consensus 154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 7421 122111 355789999999999999998643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.68 E-value=0.0015 Score=64.17 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=81.0
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccch
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGT 526 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~ 526 (637)
|..+....+.++.. .+.. ..+||||+||+|+|+-.+++++- -.|..+|..+..+..+.+ -|+-+-
T Consensus 90 f~~~~~~er~ri~~------~~~~---g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~ 158 (260)
T d2frna1 90 FSPANVKERVRMAK------VAKP---DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDR 158 (260)
T ss_dssp CCGGGHHHHHHHHH------HCCT---TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred EecCCHHHHHHHHh------hcCC---ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCce
Confidence 55555655655432 2334 67899999999999988876642 234555665555555433 244222
Q ss_pred hhccccccCCCC--CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------HHHHHHHHHHHhcCCc
Q 006633 527 YQNWCEAMSTYP--RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------VDILVKIKSITDGMEW 597 (637)
Q Consensus 527 ~~~wce~~~~yp--~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------~~~~~~~~~~~~~~~W 597 (637)
+.-.+.....++ ..||.|..+-..+ -...|-+.-++|+|||++.+-+. .+..+.++++++...+
T Consensus 159 v~~~~~D~~~~~~~~~~D~Ii~~~p~~-------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~ 231 (260)
T d2frna1 159 MSAYNMDNRDFPGENIADRILMGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 231 (260)
T ss_dssp EEEECSCTTTCCCCSCEEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred EEEEEcchHHhccCCCCCEEEECCCCc-------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 222223333343 6799877632221 13566677899999999976532 2245677788888888
Q ss_pred eeEEe
Q 006633 598 EGRIA 602 (637)
Q Consensus 598 ~~~~~ 602 (637)
++.+.
T Consensus 232 ~v~~~ 236 (260)
T d2frna1 232 DVEKL 236 (260)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 77654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.0039 Score=62.25 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccC-CCCCCCeeEEE
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRL-PYPSRAFDMAH 287 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~L-pfpd~sFDlV~ 287 (637)
...++||-||.|.|..+..+++. .++++++++..+..+..-+... ....+.+...|+... .-.++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34569999999999999999886 3566777553333222111111 124577777775432 22457899999
Q ss_pred eccccccCCc----CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 CSRCLIPWGQ----YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ~s~~L~h~~~----~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+-. ..+... -....+++.+.+.|+|||.+++-..
T Consensus 168 ~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 742 212210 0346799999999999999998753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.67 E-value=0.0027 Score=66.24 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----------------CCEEEEcCccccHHHHHHHHHHcCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----------------NILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----------------~v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
+..++.+.+++.... ..+|+|..||+|.|...+.++ .+.++++.+....-+..........
T Consensus 148 ~~Iv~~mv~ll~~~~--~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 148 RPLIQAMVDCINPQM--GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhhhHhhheeccCcc--cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 556777888876544 348999999999998776542 3667777554444333333332211
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEecccccc-CCcC--------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 265 --PALIGVMASIRLPYPSRAFDMAHCSRCLIP-WGQY--------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 265 --~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h-~~~~--------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+...+.... .+...||+|+++.-+.. +... ....++..+...|++||.+++..|
T Consensus 226 ~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 226 TDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 123444444332 35678999999875511 1000 123589999999999999999977
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0049 Score=61.18 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC-CCCCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL-PYPSRA 282 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L-pfpd~s 282 (637)
...++||-||-|.|..+..+++. .++++++++ ..++.|++. ...+.+...|+... .-..++
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~-----~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~ 151 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE-----DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDA 151 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSC
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH-----HHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCC
Confidence 34569999999999999999986 345556644 444444322 34677777775432 224568
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|++-. ..+.... .-..+++.+.+.|+|||.+++..
T Consensus 152 yDvIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 152 FDVIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 99999742 2222210 23468999999999999999865
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0075 Score=57.04 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=61.2
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHH-HHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQF-ALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~-A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
.++||+|+|.|.-+.-|+-. .++.+|-... ....++. +.+-+. ++.+.....+.+. .+.+||+|+|..+-
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~K--K~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~- 142 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK--RVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA- 142 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchH--HHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc-
Confidence 48999999999777666542 3444544221 1222222 333354 5777766666654 45689998874432
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
....++.-+...+++||.+++.
T Consensus 143 -----~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 143 -----SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -----SHHHHHHHHTTSEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHhcCCCcEEEEE
Confidence 5777999999999999999986
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.54 E-value=0.0048 Score=62.03 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHcC---------CCeEEEEeccccC-CCCCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSRA 282 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~L-pfpd~s 282 (637)
...++||-||-|.|..++.+++. . ++++++ .+..++.+++-. ..+.+...|+... .-..+.
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEI-----D~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~ 179 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEI-----DEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNE 179 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECS-----CHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTC
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcc-----cHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCC
Confidence 34569999999999999999986 3 445544 445566665432 3466666664332 124578
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+.-.. .+.... .-..+++.+.+.|+|||.++.-..
T Consensus 180 yDvII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 180 FDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EEEEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred CCEEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 999997432 121110 345689999999999999999753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.47 E-value=0.007 Score=56.69 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=75.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cch-hhccccccCCCCCccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGT-YQNWCEAMSTYPRTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~-~~~wce~~~~yp~t~Dl~H~~~lfs~~~~ 555 (637)
..+|||+|||+|+++.+++.++- ..|+.+|.++..+..+.+.-- .+. ..-.+.....++..||+|=+|-=|.....
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~ 124 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRK 124 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSST
T ss_pred CCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccc
Confidence 45899999999999987777764 355666777677777765411 111 11223445567888999988877766566
Q ss_pred CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHhcCCceeEE
Q 006633 556 RCEMEDVLLEMDRILRPEGSVII--RDDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
..+++.+.. .+.+++.+.. ....+....++.+++...|.+..
T Consensus 125 ~~d~~~l~~----~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 125 HADRPFLLK----AFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTTHHHHHH----HHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHH----HHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 666665433 2333444333 34555666777888888887654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.46 E-value=0.0098 Score=59.57 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=66.7
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCCCCCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSR 281 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lpfpd~ 281 (637)
...++...+|. +|||+.||.|.=+..++.. . +.+.|+++.-+.... +.....+ .++.+...+...++..+.
T Consensus 108 ~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~ 184 (313)
T d1ixka_ 108 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNV 184 (313)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCC
T ss_pred hhhcccCCccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccc
Confidence 44455555554 9999999999866666543 3 444555332111111 1122223 345666666666666678
Q ss_pred CeeEEEe----c--ccccc-------CCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHC----S--RCLIP-------WGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~----s--~~L~h-------~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.||.|++ + .++.. +..+ -...+|..+.+.|||||+++.++-
T Consensus 185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 8999996 1 11211 1110 223578899999999999999975
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.0027 Score=62.70 Aligned_cols=153 Identities=10% Similarity=0.126 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc---c
Q 006633 452 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL---I 524 (637)
Q Consensus 452 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---~ 524 (637)
..+|+.+.+.+..+.+- ....+|+|+|||.|..+.++++.+= .+|+.+|-++..+.++.+ -|+ +
T Consensus 92 RpeTE~lv~~~~~~~~~-------~~~~~vld~g~GsG~i~~~la~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~ 162 (271)
T d1nv8a_ 92 RPETEELVELALELIRK-------YGIKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRF 162 (271)
T ss_dssp CTTHHHHHHHHHHHHHH-------HTCCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred hhhhhhhhhhhhhhhcc-------ccccEEEEeeeeeehhhhhhhhccc--ceeeechhhhhHHHHHHHHHHHcCCCcee
Confidence 45677777766554432 2255799999999998888876542 245666777667766654 244 3
Q ss_pred chhh-ccccccCCCCCccceeeecc-------ccc----------cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHH
Q 006633 525 GTYQ-NWCEAMSTYPRTYDLIHADS-------IFS----------LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILV 586 (637)
Q Consensus 525 ~~~~-~wce~~~~yp~t~Dl~H~~~-------lfs----------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~ 586 (637)
.+++ +|-+.+......||+|=+|= ... ++...-.+..+--=+.++|+|||++++=-..++-+
T Consensus 163 ~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~ 242 (271)
T d1nv8a_ 163 FVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVE 242 (271)
T ss_dssp EEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHH
T ss_pred EEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHH
Confidence 3334 45454443346789877641 110 00011112221111368999999999965555567
Q ss_pred HHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 587 KIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 587 ~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
+|+++++...| ..|.. +.+++++++|+
T Consensus 243 ~v~~l~~~~g~---~kDl~----g~~R~~~~~k~ 269 (271)
T d1nv8a_ 243 ELKKIVSDTVF---LKDSA----GKYRFLLLNRR 269 (271)
T ss_dssp HHTTTSTTCEE---EECTT----SSEEEEEEECC
T ss_pred HHHHHHHhCCE---EeccC----CCcEEEEEEEc
Confidence 78888777655 33433 57899999986
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.40 E-value=0.0011 Score=67.15 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=69.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhcccc-------ccCCCCCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCE-------AMSTYPRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce-------~~~~yp~t~Dl~H~ 546 (637)
..+|||++||+|+|+.+++..+. -.|+.+|.++..+..+.+ -|+-...+-.+. .+..-.++||+|=+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 56899999999999998887754 134555666566666543 234222221121 12222378999876
Q ss_pred ccc-cccCCC-----CcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcC
Q 006633 547 DSI-FSLYKD-----RCEMEDVLLEMDRILRPEGSVIIRDD------VDILVKIKSITDGM 595 (637)
Q Consensus 547 ~~l-fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~~ 595 (637)
+-- |+..+. ......++...-++|+|||.+++... .+..+.|.+.+...
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~ 284 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKA 284 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHc
Confidence 543 222211 12334688889999999999999632 23445555544433
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0013 Score=66.52 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=57.6
Q ss_pred CceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhh-----------cc-cchhhccccccCCCC---Cc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYER-----------GL-IGTYQNWCEAMSTYP---RT 540 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eR-----------gl-~~~~~~wce~~~~yp---~t 540 (637)
.-.+|||+|||.|.++-.++. .+. .+++.+|.++.++..+-+. |+ .+-+.-.|..|...| ..
T Consensus 151 ~~~~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 151 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence 356899999999998866643 233 3456667666666665442 11 111111223343333 33
Q ss_pred c--ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 541 Y--DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 541 ~--Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+ |+|-+++ +...-++...|.||-|+|||||.+|+.+
T Consensus 229 ~~advi~~~~----~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 229 ANTSVIFVNN----FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHCSEEEECC----TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CcceEEEEcc----eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 3 3333321 1122356788999999999999999864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.30 E-value=0.00027 Score=63.68 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=58.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhhcccccc-CCCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAM-STYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~~wce~~-~~yp~t~Dl~H~~~ 548 (637)
...+|||++||+|+||-..++++. -+|.-+|.....+..+.+- |+ +-+++.=+..+ ......||+|.++-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 356899999999999976666665 2556667765565554432 33 22333112222 22347899998854
Q ss_pred ccccCCCCcCHHHHHHHH--hhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d 580 (637)
=|... ..+.+|-.+ .++|+|+|.+|+..
T Consensus 92 Py~~~----~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAKE----TIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SSHHH----HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhccc----hHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 33311 112222222 48999999999853
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.27 E-value=0.00098 Score=64.81 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCceeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcc---cc-hhhccccccCCCCCccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl---~~-~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
..++.|+|+|||.|.++.+|+++ .+.++.+ + ++|-+.+. |. +-+| .|.+.|. .|++...
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p----~vi~~~~~~~ri~~~~gd---~~~~~p~-~D~~~l~ 146 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----P----QVIENAPPLSGIEHVGGD---MFASVPQ-GDAMILK 146 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H----HHHTTCCCCTTEEEEECC---TTTCCCC-EEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----h----hhhhccCCCCCeEEecCC---ccccccc-ceEEEEe
Confidence 66899999999999999999764 2344432 2 12323322 11 1122 3556674 4998887
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.++-.+.+. +...||-.+-+.|+|||.++|.|
T Consensus 147 ~vLh~~~de-~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 887776532 34589999999999999999976
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0037 Score=59.70 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=76.5
Q ss_pred CceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchh----HHHHhhcc---cchhh-ccccccCC-----CCCc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTL----GVIYERGL---IGTYQ-NWCEAMST-----YPRT 540 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l----~~~~eRgl---~~~~~-~wce~~~~-----yp~t 540 (637)
+.++||++|+|+|--+.+|++- +--+..+ +..+... +.+-+-|+ |-+.+ +-.+.+.. .+.+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~ti---e~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~ 135 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTC---EVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 135 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEE---eechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence 3789999999999888888642 2222333 2222232 22223344 21221 22232222 2578
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------HHH-HHHHHHHhcCCceeEEecc
Q 006633 541 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV---------------DIL-VKIKSITDGMEWEGRIADH 604 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------~~~-~~~~~~~~~~~W~~~~~~~ 604 (637)
||+|..++-- -.....+-++-+.|||||.+|+-|-. ..+ +..+.|.+.-+|...+.
T Consensus 136 fD~ifiD~dk------~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~ll-- 207 (219)
T d2avda1 136 FDVAVVDADK------ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL-- 207 (219)
T ss_dssp EEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred ccEEEEeCCH------HHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEe--
Confidence 9999885433 33456677778999999999995321 122 23445677889998876
Q ss_pred CCCCCCcceEEEEEe
Q 006633 605 ENGPRQREKILFANK 619 (637)
Q Consensus 605 e~~~~~~~~~l~~~K 619 (637)
|. .+.++||+|
T Consensus 208 ---Pi-gdGl~ia~K 218 (219)
T d2avda1 208 ---PL-GDGLTLAFK 218 (219)
T ss_dssp ---CS-TTCEEEEEE
T ss_pred ---ec-CCeeEEEEe
Confidence 22 367999998
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.16 E-value=0.0018 Score=60.94 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=60.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRC 557 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c 557 (637)
.++|||+|||+|.+|-++...+. -+|+.+|..+.++..+.+. + ..+.--|..+...|..||+|=+|=-|.......
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N-~-~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~ 124 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRN-C-GGVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 124 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHH-C-TTSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHc-c-ccccEEEEehhhcCCcceEEEeCcccchhhhhc
Confidence 57999999999999876666654 2466667776788776553 2 222223455666789999998877675434444
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHH
Q 006633 558 EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSI 591 (637)
Q Consensus 558 ~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~ 591 (637)
++++ ++..+.+++.++..-......-+++.
T Consensus 125 D~~f----l~~a~~~~~~iy~ih~~~~~~~i~~~ 154 (197)
T d1ne2a_ 125 DRAF----IDKAFETSMWIYSIGNAKARDFLRRE 154 (197)
T ss_dssp CHHH----HHHHHHHEEEEEEEEEGGGHHHHHHH
T ss_pred hHHH----HHHHHhcCCeEEEehhhhHHHHHHHH
Confidence 4433 23445555554433223333334443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0032 Score=67.54 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----------------------CCEEEEcCccccHHHHHHHH
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----------------------NILAVSFAPRDTHEAQVQFA 259 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----------------------~v~~vdisp~Dls~a~i~~A 259 (637)
+..++.+.+++....+ .+|+|-.||+|.|.....++ .+.++++.+....-+.....
T Consensus 150 ~~Iv~~mv~ll~~~~~--~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cchhHhhhhcccCccc--hhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 5567788888765554 48999999999998765442 34667664433332222222
Q ss_pred HHcCCCe------EEEEeccccCC-CCCCCeeEEEecccccc-CCcC----------C-HHHHHHHHHhcccCCeEEEEE
Q 006633 260 LERGVPA------LIGVMASIRLP-YPSRAFDMAHCSRCLIP-WGQY----------A-DGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 260 ~erg~~~------~~~~~d~~~Lp-fpd~sFDlV~~s~~L~h-~~~~----------d-~~~~L~ei~RvLKPGG~Lvls 320 (637)
. .+... .+...+....+ .....||+|+++.-+.- +..+ + .-.++..+.+.|+|||++.+.
T Consensus 228 l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 228 L-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp T-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred h-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 1 12211 11111111111 23467999999874411 1000 1 225899999999999999999
Q ss_pred eC
Q 006633 321 GP 322 (637)
Q Consensus 321 ~p 322 (637)
.|
T Consensus 307 lP 308 (524)
T d2ar0a1 307 VP 308 (524)
T ss_dssp EE
T ss_pred Ee
Confidence 87
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=95.99 E-value=0.019 Score=55.30 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=95.5
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhh--hhcCCCeEEEEeccCCC-CcchhH-HHHhhcc--cc
Q 006633 452 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAA--ALVDDPLWVMNTVPVEA-KINTLG-VIYERGL--IG 525 (637)
Q Consensus 452 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa--~l~~~~v~~mnv~~~~~-~~~~l~-~~~eRgl--~~ 525 (637)
.+..+.|.+++-+=..++..+.. ....+++|+|+|-|==|- |+...+. -+.++.... ..+.|+ ++.+=|| +-
T Consensus 46 ~~~~~i~~rHi~DSl~~~~~~~~-~~~~~ilDiGSGaGfPGi~laI~~p~~-~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 46 TEKKEVYLKHFYDSITAAFYVDF-NQVNTICDVGAGAGFPSLPIKICFPHL-HVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp CSHHHHHHHTHHHHHGGGGTSCG-GGCCEEEEECSSSCTTHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred CCHHHHHHHhccchhhhhhhhcc-cCCCeEEeecCCCchHHHHHHHhCCCc-cceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 34558888887654444444433 346789999999763232 2222222 222232222 222333 3344476 34
Q ss_pred hhhccccccCC---CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCcee
Q 006633 526 TYQNWCEAMST---YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEG 599 (637)
Q Consensus 526 ~~~~wce~~~~---yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~ 599 (637)
++|.-.|.+.. +...||+|=| .+-..++.++--....|+|||.+++- +-.+.+...++..+.+.++.
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEeehhhhccccccccccceEEEE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 56666665543 4468999887 34466778777779999999999995 45567777788888888876
Q ss_pred EEecc-C-CCCCCcceEEEEEecC
Q 006633 600 RIADH-E-NGPRQREKILFANKKY 621 (637)
Q Consensus 600 ~~~~~-e-~~~~~~~~~l~~~K~~ 621 (637)
..... + ......-.|++.+|.-
T Consensus 197 ~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECS
T ss_pred EEEEEEeCCCCCCCEEEEEEEECC
Confidence 53221 1 1111234677777754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.96 E-value=0.015 Score=56.37 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=59.0
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCC-eEEEE-eccccCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP-ALIGV-MASIRLPYP 279 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~-~~~~~-~d~~~Lpfp 279 (637)
..+.+.....++ .+|+|+|||.|.++.+++++ ++.++++. .|.++.-+. ....+.+ +.+.. .+... .+
T Consensus 56 ~~~~~~~~~~~~--~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG-~d~~e~P~~-~~~~~~ni~~~~~~~dv~~--l~ 129 (257)
T d2p41a1 56 RWFVERNLVTPE--GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG-GPGHEEPIP-MSTYGWNLVRLQSGVDVFF--IP 129 (257)
T ss_dssp HHHHHTTSSCCC--EEEEEETCTTSHHHHHHHTSTTEEEEEEECCC-STTSCCCCC-CCSTTGGGEEEECSCCTTT--SC
T ss_pred HHHHHhcCccCC--CeEEEecCCCChHHHHHHhhcCCCceeEEEec-CccccCCcc-ccccccccccchhhhhHHh--cC
Confidence 344444334443 38999999999999999877 23444442 122211000 0000111 12211 11222 35
Q ss_pred CCCeeEEEeccccccCCcC--CH---HHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQY--AD---GLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~--d~---~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....|+|+|-.+- .-... +. -.+++-+.+.|+|||.|++-..
T Consensus 130 ~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 130 PERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp CCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 6789999996532 11100 11 1466777899999999998754
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.013 Score=57.78 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=69.1
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--CCCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSR 281 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--fpd~ 281 (637)
+..++...++. +|||+.+|.|.=+..|++. .++++|+++.-+.. ..+.....+........+..... ...+
T Consensus 94 ~~~~L~~~~g~--~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~-l~~~~~r~g~~~~~~~~~~~~~~~~~~~~ 170 (284)
T d1sqga2 94 CMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSR-VYDNLKRLGMKATVKQGDGRYPSQWCGEQ 170 (284)
T ss_dssp HHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHH-HHHHHHHTTCCCEEEECCTTCTHHHHTTC
T ss_pred cccccCccccc--eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhh-Hhhhhhcccccceeeeccccccchhcccc
Confidence 34445545544 9999999999887777764 26677776644432 22334444665544443332221 3456
Q ss_pred CeeEEEe----c--cccc-------cCCcC-------CHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 282 AFDMAHC----S--RCLI-------PWGQY-------ADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 282 sFDlV~~----s--~~L~-------h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
.||.|++ + ..+- .+.+. -...+|..+.+.|||||+++.++-.
T Consensus 171 ~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 171 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 8999995 2 2221 11111 1336888999999999999999753
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.84 E-value=0.0018 Score=61.63 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=66.1
Q ss_pred CceeEeeecccchhhhhhhcC---CC--eEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCC----CC-Cccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD---DP--LWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMST----YP-RTYD 542 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~---~~--v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~----yp-~t~D 542 (637)
+.++||++|+|+|..+.+|++ .+ |+++-+-|.... .....+-.-|+ |-+++ +..+.+.. ++ ..||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~-~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAA-ITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHH-HHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHH-HHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 468999999999998888864 23 333333221111 22223344466 33332 22233333 33 6899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEE
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~ 601 (637)
++..++-.+.|. ....+.|.-|+|||||.+|+-| ..+.+..|++ .=+|....
T Consensus 135 ~ifiD~~~~~~~----~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 135 MVFLDHWKDRYL----PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEECSCGGGHH----HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred eeeecccccccc----cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 999865433322 2245777889999999866533 2445555554 34565553
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.79 E-value=0.0016 Score=62.25 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=53.5
Q ss_pred CceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC--Cccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp--~t~Dl~H~~~lfs 551 (637)
..-+|||+|||+|-.+|-|.+. .|.++-+.+.-.. ...+.+.+.|+-.+.--.+..+..+| ..||.|++.+-..
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~-~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVE-FAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAP 156 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHH-HHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHH-HHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccc
Confidence 3669999999999988877643 3554443331111 12222233344222222234455566 7899999844332
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.++.-|++ -|+|||.+|+-
T Consensus 157 ------~ip~~l~~---qL~~gGrLv~p 175 (215)
T d1jg1a_ 157 ------KIPEPLIE---QLKIGGKLIIP 175 (215)
T ss_dssp ------SCCHHHHH---TEEEEEEEEEE
T ss_pred ------cCCHHHHH---hcCCCCEEEEE
Confidence 23344544 59999999873
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.71 E-value=0.0011 Score=63.76 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=53.3
Q ss_pred ceeEeeecccchhhhhhhcCC----Ce-EEEEeccCCCCcchhHHHHhh---------cc--cchhhccccccCCCC--C
Q 006633 478 YRNLLDMNAYLGGFAAALVDD----PL-WVMNTVPVEAKINTLGVIYER---------GL--IGTYQNWCEAMSTYP--R 539 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~----~v-~~mnv~~~~~~~~~l~~~~eR---------gl--~~~~~~wce~~~~yp--~ 539 (637)
..+|||+|||+|-++|.|.+. ++ -.-.|..++..+..+..+.++ |+ +-+.+ +.....+| .
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~--~d~~~~~~~~~ 158 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE--GDGRKGYPPNA 158 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE--SCGGGCCGGGC
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe--ccccccccccc
Confidence 679999999999888887543 21 000122334444555555443 11 11222 23344455 6
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.||.|++.+.... ++. .+-+.|+|||.+|+-
T Consensus 159 ~fD~Iiv~~a~~~------~p~---~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPD------TPT---ELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSS------CCH---HHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechh------chH---HHHHhcCCCcEEEEE
Confidence 8999998554331 223 345789999999873
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0074 Score=58.75 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~L 276 (637)
...++.+.+.+...++. .|||||||.|.++..|++++ +.++++ +...++...++. .++.+..+|+...
T Consensus 7 ~~~~~~Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~~v~aiEi-----D~~l~~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQLTVIEL-----DRDLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCSCEEEECC-----CHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCchHHHHHHHccCCceEEEEe-----ccchhHHHHHHhhhccchhHHhhhhhhh
Confidence 34567777777655544 89999999999999999984 555554 445555444432 3467777776665
Q ss_pred CC
Q 006633 277 PY 278 (637)
Q Consensus 277 pf 278 (637)
++
T Consensus 80 ~~ 81 (252)
T d1qyra_ 80 NF 81 (252)
T ss_dssp CH
T ss_pred cc
Confidence 43
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.53 E-value=0.0048 Score=59.48 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCceeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhh-cccchhhccccccCCCCCccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eR-gl~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
...+.|+|+|||.|.++.+|+++ .+.+.-+-++... +.+. .+-.+-+|. |.+.|.. |..-..+++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~------~~~~~r~~~~~~d~---~~~~P~a-d~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED------APSYPGVEHVGGDM---FVSIPKA-DAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT------CCCCTTEEEEECCT---TTCCCCC-SCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh------cccCCceEEecccc---cccCCCc-ceEEEEEEe
Confidence 45899999999999999999864 3455544333222 1111 122334443 3455632 322222233
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
-.+.+ -+...||-++-+.|+|||.++|-|
T Consensus 150 h~~~d-~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 150 HDWSD-EHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp TTSCH-HHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred ecCCH-HHHHHHHHHHHHhcCCCceEEEEE
Confidence 33322 133579999999999999999975
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.48 E-value=0.0083 Score=57.70 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=55.7
Q ss_pred CEEEEECCCCchHHHHHhhc--------CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAH 287 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp----fpd~sFDlV~ 287 (637)
.+|||||++.|.-+..+++. .+.++|+.+.... .+......+.+..+|..... +....+|+|+
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIf 156 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLIF 156 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEEE
Confidence 48999999999766655421 3667777442111 11222345777777754332 3455688887
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.-.. |... ....-+ +....|++||++++.+
T Consensus 157 ID~~--H~~~-~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 157 IDNA--HANT-FNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EESS--CSSH-HHHHHH-HHHHTCCTTCEEEECS
T ss_pred EcCC--cchH-HHHHHH-HHhcccCcCCEEEEEc
Confidence 6432 3332 222223 4678999999999974
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.049 Score=53.47 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc------CCCeEEEEeccc
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER------GVPALIGVMASI 274 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~ 274 (637)
..++.+.+.+....+. .|||||+|.|.++..|++++ ++++++++ ..++...+. ..++.+..+|..
T Consensus 8 ~i~~kIv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~-----~l~~~L~~~~~~~~~~~~~~~i~~D~l 80 (278)
T d1zq9a1 8 LIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVACELDP-----RLVAELHKRVQGTPVASKLQVLVGDVL 80 (278)
T ss_dssp HHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEEESCH-----HHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred HHHHHHHHHhCCCCCC--EEEEECCCchHHHHHHHhcCCcEEEEEEcc-----chhHHHHHHHhhhccccchhhhHHHHh
Confidence 4566777777655544 89999999999999999874 55565543 333333221 134777888877
Q ss_pred cCCCCCCCeeEEEecc
Q 006633 275 RLPYPSRAFDMAHCSR 290 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~ 290 (637)
...++ .++.|+++.
T Consensus 81 ~~~~~--~~~~vV~NL 94 (278)
T d1zq9a1 81 KTDLP--FFDTCVANL 94 (278)
T ss_dssp TSCCC--CCSEEEEEC
T ss_pred hhhhh--hhhhhhcch
Confidence 66654 356788775
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.34 E-value=0.0032 Score=58.70 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCceeEeeecccchh----hhhhhcCC---CeEEEEeccCCCCcchhHHHHhhcccch---------hh-c---------
Q 006633 476 GRYRNLLDMNAYLGG----FAAALVDD---PLWVMNTVPVEAKINTLGVIYERGLIGT---------YQ-N--------- 529 (637)
Q Consensus 476 ~~~r~vlD~~~g~gg----faa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgl~~~---------~~-~--------- 529 (637)
++--+|+++||++|- .|..|.+. .-|-..+..+|-+...|..+.+ |..+. +. .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-CcccHHHHhhhhHHHHhhceeecCCCc
Confidence 334568999999996 44444321 1123457788877677766642 32110 00 0
Q ss_pred ---ccc----------------ccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 530 ---WCE----------------AMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 530 ---wce----------------~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
|.. .....| +.||+|=|-+|+..... -....++-.+-+.|+|||++++...
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCcEEEEecC
Confidence 000 001122 78999999999876553 2446899999999999999999744
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=94.87 E-value=0.028 Score=56.10 Aligned_cols=144 Identities=10% Similarity=0.024 Sum_probs=80.2
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc-----cchhh-ccccccCCCCCccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL-----IGTYQ-NWCEAMSTYPRTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl-----~~~~~-~wce~~~~yp~t~D 542 (637)
...++||.+|.|.|+.+..+.+. ++--+-+|..|. ..++++.+. |. +.+++ |+=+-+...++.||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG--ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH--HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 45889999999999999988776 453333444443 466655443 11 11111 22233334578899
Q ss_pred eeeeccc--cccCCCCcCH--HHHHHHHhhcccCCcEEEEE------eCHHHHHHHHHHHhcCCceeEEeccCCCCC-Cc
Q 006633 543 LIHADSI--FSLYKDRCEM--EDVLLEMDRILRPEGSVIIR------DDVDILVKIKSITDGMEWEGRIADHENGPR-QR 611 (637)
Q Consensus 543 l~H~~~l--fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~ 611 (637)
+|-.+.. +........+ ...+..+.|.|+|||.++.. ...++...|.+.++..=..+.....---+. ..
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~ 233 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN 233 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCC
Confidence 9986432 1111111111 46788899999999999884 223455666665554444444332110000 13
Q ss_pred ceEEEEEecC
Q 006633 612 EKILFANKKY 621 (637)
Q Consensus 612 ~~~l~~~K~~ 621 (637)
..+++|.|..
T Consensus 234 w~f~~aS~~~ 243 (312)
T d1uira_ 234 FGFLLASDAF 243 (312)
T ss_dssp EEEEEEESSS
T ss_pred CEeEEEeCCC
Confidence 4578888864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.041 Score=49.39 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=62.2
Q ss_pred HHhcccCCCCCEEEEECC--CCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------C
Q 006633 210 KLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------Y 278 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGC--GtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------f 278 (637)
+.....+++ +||-+|+ |.|..+..+++. +..++.++ .++...+++++.|....+ +..... .
T Consensus 22 ~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~---~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 22 HSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGTA---GTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYV 93 (174)
T ss_dssp TTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHH
T ss_pred HHhCCCCCC--EEEEEeccccccccccccccccCccccccc---ccccccccccccCccccc---ccccccHHHHhhhhh
Confidence 333344444 9999997 466777777765 77766663 344566778777754433 222211 2
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.||+|+..- ....+.+..++|+|||.++..+
T Consensus 94 ~~~g~d~v~d~~---------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 94 GEKGIDIIIEML---------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CTTCEEEEEESC---------HHHHHHHHHHHEEEEEEEEECC
T ss_pred ccCCceEEeecc---------cHHHHHHHHhccCCCCEEEEEe
Confidence 346699999742 2347888999999999999875
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.063 Score=52.89 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=60.0
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCC---C
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP---S 280 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfp---d 280 (637)
.++...++. +|||+.+|.|.-+..|++. + +.++|+++.-+.. ..+...+.+. ++.+...|...+... .
T Consensus 88 ~~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~-l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~ 164 (293)
T d2b9ea1 88 MLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS-MATLLARAGVSCCELAEEDFLAVSPSDPRY 164 (293)
T ss_dssp HHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHTTCCSEEEEECCGGGSCTTCGGG
T ss_pred cccCCCccc--eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHH-HHHHHHhcCccceeeeehhhhhhccccccc
Confidence 344444444 8999999999988877754 2 5566664322221 1222233344 466666666655432 2
Q ss_pred CCeeEEEe----cc--ccc-----cC----CcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHC----SR--CLI-----PW----GQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~----s~--~L~-----h~----~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.||.|++ +. ++- .| ... ....++..+. .|+|||+++.++-
T Consensus 165 ~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC 227 (293)
T d2b9ea1 165 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC 227 (293)
T ss_dssp TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred ceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence 56999995 21 110 01 100 1123444455 4799999999875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.69 E-value=0.051 Score=48.37 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=63.6
Q ss_pred cccCCCCCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC--------C-CCCC
Q 006633 213 NLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--------P-YPSR 281 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L--------p-fpd~ 281 (637)
..++++ +||-+||| .|.++..+++. +..++.+ +.++...+.+++.+....+..-..... . ...+
T Consensus 23 ~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi~v---~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 23 GVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCT---ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCC--EEEEEcccccchhhHhhHhhhccccccc---chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence 444544 89999998 56777777765 6666655 556777888888776554432111110 0 1134
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+|+|+-.- -....+..+.++|||||.+++.+.
T Consensus 98 g~D~vid~~--------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 98 LPNVTIDCS--------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CCSEEEECS--------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceeeecC--------CChHHHHHHHHHHhcCCceEEEec
Confidence 589887532 234578889999999999999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.0078 Score=55.57 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=73.3
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC-CCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-PRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y-p~t~Dl~H~~~lfs 551 (637)
..+|+|+||+-|||--++.++ .|+..-..|.+.- +. +..-.|-++.....-.....+ ...+|+|=+|+-+.
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i-~~--~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~ 99 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-VG--VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPN 99 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-TT--EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeeccccccc-CC--ceEeecccccchhhhhhhhhccCcceeEEEecccch
Confidence 668999999999999887653 2444444443321 11 111122222111111111112 25699999998876
Q ss_pred cCCCCc--------CHHHHHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCceeEEecc-CCCCCCcceEEEE
Q 006633 552 LYKDRC--------EMEDVLLEMDRILRPEGSVIIR-----DDVDILVKIKSITDGMEWEGRIADH-ENGPRQREKILFA 617 (637)
Q Consensus 552 ~~~~~c--------~~~~~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~-e~~~~~~~~~l~~ 617 (637)
....+- .....|.=+.++|||||.||+- +..+.+..++...+. +.++-. .+-+...|.-+||
T Consensus 100 ~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~----V~~~KP~aSR~~SsE~Ylv~ 175 (180)
T d1ej0a_ 100 MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK----VKVRKPDSSRARSREVYIVA 175 (180)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEE----EEEECCTTSCTTCCEEEEEE
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCE----EEEECCCCcccCCceEEEEE
Confidence 543221 1112233346999999999995 333344444444433 333322 2334568999999
Q ss_pred Ee
Q 006633 618 NK 619 (637)
Q Consensus 618 ~K 619 (637)
+.
T Consensus 176 ~g 177 (180)
T d1ej0a_ 176 TG 177 (180)
T ss_dssp EE
T ss_pred ec
Confidence 74
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.083 Score=49.53 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhh--hhhcCCCeEEEEeccCCCCcchhH-HHHhhcc--cchh
Q 006633 453 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFA--AALVDDPLWVMNTVPVEAKINTLG-VIYERGL--IGTY 527 (637)
Q Consensus 453 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfa--a~l~~~~v~~mnv~~~~~~~~~l~-~~~eRgl--~~~~ 527 (637)
+..+.|.+++-+=..+++.+.. -+|+|+|+|-|==| -|+...++-+.=|-...-....|. ++.+=|| +-++
T Consensus 45 ~~~~~~~rHi~DSl~~~~~~~~----~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~ 120 (207)
T d1jsxa_ 45 DPNEMLVRHILDSIVVAPYLQG----ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPV 120 (207)
T ss_dssp ---CHHHHHHHHHHHHGGGCCS----SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred CHHHHHHHHhcchHhhhhhhcC----CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeee
Confidence 3446788777543334444433 27999999976322 233333331111212111122333 3444466 3445
Q ss_pred hccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 528 QNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 528 ~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
|+-.|.+ .+ ..||+|=| .+-+.++.++--.-+.|+|+|.+++--.....++++.+- -.|+..
T Consensus 121 ~~R~E~~--~~~~~fD~V~s-------RA~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~~ 183 (207)
T d1jsxa_ 121 QSRVEEF--PSEPPFDGVIS-------RAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQVE 183 (207)
T ss_dssp ECCTTTS--CCCSCEEEEEC-------SCSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEEE
T ss_pred ccchhhh--ccccccceehh-------hhhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEEE
Confidence 4433432 23 58998866 334667777777789999999999975544444554443 366554
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.35 E-value=0.036 Score=56.41 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=63.1
Q ss_pred CEEEEECCCCchHHHHHhhc--------------------CCEEEEcCccccHHHHHHHHHHcC-CCeEEEE---ecccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALERG-VPALIGV---MASIR 275 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------------------~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~---~d~~~ 275 (637)
-+|.|+||.+|..+..+.+. .+..-|+-.+|.+.-......... .+..|.. ++...
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 46999999999765322211 233446655666643332221111 1122222 23444
Q ss_pred CCCCCCCeeEEEeccccccCCcC--------------------------------CHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQY--------------------------------ADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~--------------------------------d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
--||+++.|++||+.++ ||... |...+|+-=.+-|+|||.++++...
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 45899999999999999 77431 3334677777889999999998643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=94.13 E-value=0.0069 Score=55.23 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=57.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccc-hhhccccccCC---CC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG-TYQNWCEAMST---YP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~-~~~~wce~~~~---yp-~t~Dl~H~~~ 548 (637)
-.+|||++||+|++|.+.++++.- |+-+|.++..+..+.+ -|+-. +...-+..|.. .+ ..||+|=+|=
T Consensus 42 g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 347999999999999988888763 3345666567665532 23311 22222222222 22 6799987643
Q ss_pred ccccCCCCcCHHHHHHHH--hhcccCCcEEEEEeC
Q 006633 549 IFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~ 581 (637)
=|.. ++..++.++ -.+|+|||.+|+..+
T Consensus 119 PY~~-----~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYAM-----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTTS-----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccc-----CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 2221 233444444 258999999998643
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.50 E-value=0.0071 Score=56.44 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-----cchhhccccccC-------CCC-Ccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMS-------TYP-RTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~~wce~~~-------~yp-~t~ 541 (637)
....+++|++||+||++.++++. |- ..|+..|..+.++..+.+|-= +-.++ ..|+ .++ ..+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~---~~f~~~~~~~~~~~~~~v 96 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFK---VSYREADFLLKTLGIEKV 96 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEE---CCGGGHHHHHHHTTCSCE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchh---HHHhhHHHHHHHcCCCCc
Confidence 44679999999999999999775 32 467888888889998887632 22233 2232 233 566
Q ss_pred ceeeeccccccCC----CC--cCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhc
Q 006633 542 DLIHADSIFSLYK----DR--CEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDG 594 (637)
Q Consensus 542 Dl~H~~~lfs~~~----~~--c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~ 594 (637)
|-|-.|-=.|.++ .| -.+...|.++-++|+|||.+++-.- .-.-.-|+++++.
T Consensus 97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 6554431122221 11 2234778888999999999977532 2122345555543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.44 E-value=0.014 Score=52.49 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=59.2
Q ss_pred hcccCCCCCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEe
Q 006633 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPSRAFDMAHC 288 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-Lpfpd~sFDlV~~ 288 (637)
....+++ +||-+|+| .|.++..+++. |..++.+ +.++..++.+++-|....+...+... ..-..+.||.|+.
T Consensus 23 ~~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi~~---~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 23 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVI---SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEE---ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred hCcCCCC--EEEEECCCCcchhHHHHhhhcccccccc---ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence 3445544 89999998 67777777765 6555544 33445566777777554332211111 1112457998886
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.-.-.+ . ..+....+.|||||.+++.+
T Consensus 98 ~~~~~~-~-----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 98 CASSLT-D-----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CCSCST-T-----CCTTTGGGGEEEEEEEEECC
T ss_pred EecCCc-c-----chHHHHHHHhhccceEEEec
Confidence 422211 1 12456789999999999985
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=93.39 E-value=0.067 Score=52.92 Aligned_cols=143 Identities=11% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCceeEeeecccchhhhhhhc----CCCeEEEEeccCCCCcchhHHHHhhc----c-cchhhccccccCCCC-Cccceee
Q 006633 476 GRYRNLLDMNAYLGGFAAALV----DDPLWVMNTVPVEAKINTLGVIYERG----L-IGTYQNWCEAMSTYP-RTYDLIH 545 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~~~eRg----l-~~~~~~wce~~~~yp-~t~Dl~H 545 (637)
....+|+|.+||.|+|..++. ++.-.-.++...|-.+.++.++...- . ...++ ...+...+ ..||+|=
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--cccccccccccccccc
Confidence 557899999999999987764 33334456777776655665554321 1 11111 12233344 7899988
Q ss_pred eccccccCC--------------CCcCHHHH-HHHHhhcccCCcEEEE--EeC---HHHHHHHHHHHhcCCceeEEeccC
Q 006633 546 ADSIFSLYK--------------DRCEMEDV-LLEMDRILRPEGSVII--RDD---VDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 546 ~~~lfs~~~--------------~~c~~~~~-l~e~dRiLrPgG~~i~--~d~---~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
++-=|+... ..-++..+ +..+-+.|+|||.+++ .+. ...-.++++.+-.-++-..+.+..
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECC
Confidence 876665221 11223344 4447899999997655 221 123345666444434433344432
Q ss_pred ----CCCCCcceEEEEEec
Q 006633 606 ----NGPRQREKILFANKK 620 (637)
Q Consensus 606 ----~~~~~~~~~l~~~K~ 620 (637)
.+...+--|||.+|+
T Consensus 274 ~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred ccccCCCCCCeEEEEEECC
Confidence 223345678999985
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.82 E-value=0.12 Score=51.42 Aligned_cols=122 Identities=21% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhcc-cc-cc------CCCCCccce
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNW-CE-AM------STYPRTYDL 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~w-ce-~~------~~yp~t~Dl 543 (637)
.+.++|||+.||+|+|+.+++..+- .|+.+|.+...+..+.+- |+-..-|.| |+ .| ....+.||+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 3467999999999999999988774 455668887777777542 442212222 12 11 112378999
Q ss_pred eeeccc-cccCCC------CcCHHHHHHHHhhcccCCcEEEEE-------eCHHHHHHHHHHHhcCCceeE
Q 006633 544 IHADSI-FSLYKD------RCEMEDVLLEMDRILRPEGSVIIR-------DDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 544 ~H~~~l-fs~~~~------~c~~~~~l~e~dRiLrPgG~~i~~-------d~~~~~~~~~~~~~~~~W~~~ 600 (637)
|=+|== |+..+. +-.+..++..+-++|+|||.+++. +.....+-+.+.+......+.
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 876422 322111 111234445567899999975553 122233445556666666654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=92.68 E-value=0.047 Score=52.42 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCceeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcc---cc-hhhccccccCCCCCccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl---~~-~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
...++|+|+|+|.|.++.+++++ .+.+...-+ ++-+.+. +. +-|| .|.+-| .+|++...
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---------vi~~~~~~~rv~~~~gD---~f~~~p-~aD~~~l~ 145 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ---------VVENLSGSNNLTYVGGD---MFTSIP-NADAVLLK 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH---------HHTTCCCBTTEEEEECC---TTTCCC-CCSEEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH---------HHHhCcccCceEEEecC---cccCCC-CCcEEEEE
Confidence 34789999999999999999764 344544321 2222222 11 1122 233334 67999888
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCC---cEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPE---GSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPg---G~~i~~d 580 (637)
.++-.+.+. +...||-.+-+.|+|| |.++|-|
T Consensus 146 ~vLHdw~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 146 YILHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred eecccCChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 887776543 3347899999999999 6777764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.50 E-value=0.15 Score=48.26 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=37.3
Q ss_pred EEEeccccC--CCCCCCeeEEEecccc----ccCCcC-----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 268 IGVMASIRL--PYPSRAFDMAHCSRCL----IPWGQY-----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 268 ~~~~d~~~L--pfpd~sFDlV~~s~~L----~h~~~~-----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.++|...+ .++++++|+|++..-+ ..|... .....+.++.|+|||||.+++...
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 445554332 3678999999997632 111110 245678899999999999999754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.48 E-value=0.079 Score=47.78 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=61.4
Q ss_pred HHHHhcccCCCCCEEEEECCC-CchHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEecc---------cc
Q 006633 208 IGKLINLKDGSIRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS---------IR 275 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCG-tG~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~---------~~ 275 (637)
+.+....++|+ +||-+|+| .|.++..+++. |. .++.+ +.++...+.+++-|....+...+. .+
T Consensus 20 l~~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 20 FDEYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIVI---AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp HHTCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEE---ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHH
T ss_pred HHHHhCCCCCC--EEEEECCCccchhheeccccccccccccc---ccccccccccccccceEEEeccccchHHHHHHHHH
Confidence 33333444444 99999998 46777777765 54 44444 446667778877775443321111 00
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+ .....||+|+-.-. - ...++...+.|+|||.+++.+
T Consensus 95 ~-~~~~g~Dvvid~vG---~-----~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 95 I-THGRGADFILEATG---D-----SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp H-TTTSCEEEEEECSS---C-----TTHHHHHHHHEEEEEEEEECC
T ss_pred h-hCCCCceEEeecCC---c-----hhHHHHHHHHhcCCCEEEEEe
Confidence 1 12345999985421 1 236788899999999999875
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.36 E-value=0.015 Score=53.77 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=68.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC-C-CccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-P-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y-p-~t~Dl~H~~~lfs~~~ 554 (637)
...+|||.+||.|+|..++.++-.-.-++...|-.+..+.... .. ...+..+... + ..||++.++--|....
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--~~----~~~~~~~~~~~~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--WA----EGILADFLLWEPGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--TE----EEEESCGGGCCCSSCEEEEEECCCCCCBS
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--cc----eeeeeehhccccccccceecccCcccccc
Confidence 3568999999999998877542000011222222212211111 00 1112222222 2 7899988876664321
Q ss_pred -------------------------CCcCHH-HHHHHHhhcccCCcEEEEEeCH-----HHHHHHHH-HHhcCCceeEEe
Q 006633 555 -------------------------DRCEME-DVLLEMDRILRPEGSVIIRDDV-----DILVKIKS-ITDGMEWEGRIA 602 (637)
Q Consensus 555 -------------------------~~c~~~-~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~-~~~~~~W~~~~~ 602 (637)
...++. .++...-+.|+|||++.+=-+. ..-..+++ +++....++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~i~~~ 172 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYL 172 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEEEEcc
Confidence 223333 3344567899999997663111 12234444 455555443321
Q ss_pred c-cCCCCCCcceEEEEEec
Q 006633 603 D-HENGPRQREKILFANKK 620 (637)
Q Consensus 603 ~-~e~~~~~~~~~l~~~K~ 620 (637)
. .-.+...+--|++.+|.
T Consensus 173 ~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 173 GEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp ESCSTTCCCCEEEEEEESS
T ss_pred hhcCCCCCCcEEEEEEEeC
Confidence 1 11123345677777773
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.51 E-value=0.22 Score=50.69 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=58.9
Q ss_pred CCEEEEECCCCchHHHHHhh-cC---CEEEEcCccccHHHHHHHHHHcCCC----------------eEEEEeccccCCC
Q 006633 219 IRTAIDTGCGVASWGAYLMS-RN---ILAVSFAPRDTHEAQVQFALERGVP----------------ALIGVMASIRLPY 278 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~~---v~~vdisp~Dls~a~i~~A~erg~~----------------~~~~~~d~~~Lpf 278 (637)
..+|||..||+|..+...+. .+ |++.|+++..+.....+ +..++.. +.+...|...+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N-~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRN-VMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHH-HHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHH-HHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 34899999999999986554 43 45566654333222222 2222221 2233333322221
Q ss_pred -CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 -PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 -pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....||+|..- ++. .+..+|..+.+.++.||.|.++.
T Consensus 125 ~~~~~fDvIDiD----PfG--s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLD----PFG--SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEEC----CSS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCC----CCC--CcHHHHHHHHHHhccCCEEEEEe
Confidence 23569999864 444 46679999999999999999984
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.95 E-value=0.21 Score=47.16 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=71.0
Q ss_pred CceeEeeecccchhhhhhhcC---CC--eEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCC------CCCcc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD---DP--LWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMST------YPRTY 541 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~---~~--v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~------yp~t~ 541 (637)
+.++||.+|+++|--+.+|++ .+ |++.-..|.... -..+.+-+-|+ |-+.+ +..+.+.. .+.+|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~-~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYE-LGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHH-HHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHH-HHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 378999999999977766652 22 333332222111 12223333455 22221 11222222 24689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC--------------HHH----HHHHHH----HHhcCCcee
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD--------------VDI----LVKIKS----ITDGMEWEG 599 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--------------~~~----~~~~~~----~~~~~~W~~ 599 (637)
|+|=.|+ +.-.....+-..-+.|||||.+|+-+- ... .+.|++ +...=+|++
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~ 211 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEI 211 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCC
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9976643 333355666666789999999998532 111 122322 344556777
Q ss_pred EEeccCCCCCCcceEEEEEe
Q 006633 600 RIADHENGPRQREKILFANK 619 (637)
Q Consensus 600 ~~~~~e~~~~~~~~~l~~~K 619 (637)
.+.-. .+.++|++|
T Consensus 212 ~llPi------gDGl~i~~K 225 (227)
T d1susa1 212 CMLPV------GDGITICRR 225 (227)
T ss_dssp EEECS------TTCEEEECB
T ss_pred EEeec------CCeeEEEEE
Confidence 77533 367899988
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.73 E-value=0.25 Score=45.29 Aligned_cols=104 Identities=19% Similarity=0.096 Sum_probs=63.8
Q ss_pred HHhcccCCCCCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCC--------
Q 006633 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY-------- 278 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpf-------- 278 (637)
+....++++ +||-+|||. |..+..+++. +. .++-+ |.++..+++|++.|....+ +....++
T Consensus 19 ~~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~---d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t 90 (195)
T d1kola2 19 VTAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVG---DLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALL 90 (195)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHH
T ss_pred HHhCCCCCC--EEEEECcCHHHHHHHHHHHhhcccceeee---cccchhhHhhhhccccEEE---eCCCcCHHHHHHHHh
Confidence 344556655 999999997 6666676654 33 33333 4456777888888753322 2212111
Q ss_pred CCCCeeEEEeccccc-----cC--CcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLI-----PW--GQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~-----h~--~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+|+++-.-... +. ........++.+.+++||||.+++.+
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 234689998532210 00 00034578999999999999999986
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=90.50 E-value=0.1 Score=47.44 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=55.3
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH---hhcccc---hhh-ccccccCCCCCccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY---ERGLIG---TYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---eRgl~~---~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
-+|||+.||+|++|-..++++.. .|+-+|.....+.++. +..-+. ++. |.-+-+..-...||+|-+|-=|.
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 47999999999999877778763 2333444444555443 332122 111 11111222337899998865443
Q ss_pred cCCCCcCHHHHHHHHh--hcccCCcEEEEE
Q 006633 552 LYKDRCEMEDVLLEMD--RILRPEGSVIIR 579 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~d--RiLrPgG~~i~~ 579 (637)
. ...+.+|--+. .+|+|+|.+|+-
T Consensus 123 ---~-~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 ---R-GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ---T-TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---c-chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2 23444443333 589999999994
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.09 E-value=0.18 Score=45.36 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHhcccCCCCCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC------CCC
Q 006633 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YPS 280 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp------fpd 280 (637)
+....++++ +||=+|||. |.++..+++. +. .++.+ |.++...+.+++-|....+. ....... ...
T Consensus 21 ~~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~---d~~~~r~~~a~~lGa~~~i~-~~~~~~~~~v~~~t~g 94 (174)
T d1jqba2 21 ELADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIGV---GSRPICVEAAKFYGATDILN-YKNGHIEDQVMKLTNG 94 (174)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEEE---CCCHHHHHHHHHHTCSEEEC-GGGSCHHHHHHHHTTT
T ss_pred HHhCCCCCC--EEEEEcCCcchhhhhhhhhcccccccccc---cchhhhHHHHHhhCcccccc-ccchhHHHHHHHHhhc
Confidence 444556655 888899985 7888888876 43 23344 44566777887777543321 1111100 123
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..||+|+-.-.. ...+++..+.|||||.+++.+
T Consensus 95 ~G~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 95 KGVDRVIMAGGG--------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp SCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred cCcceEEEccCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 459998854321 236788889999999999975
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.04 E-value=0.46 Score=45.96 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchh---------------hccccccCCC---
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTY---------------QNWCEAMSTY--- 537 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~---------------~~wce~~~~y--- 537 (637)
.+.++||-+|+|.|+.+..+.+.+.--+-+|.+|. ..+.++.+ ..+.. +-.++.-..|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~--~Vi~~a~~--~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~ 146 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE--DVIMVSKD--LIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 146 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH--HHHHHHHH--HTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCH--HHHHHHHH--hhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence 55899999999999999998888763344555554 46655532 11110 0000000001
Q ss_pred CCccceeeeccccccCCCCcC--HHHHHHHHhhcccCCcEEEEE
Q 006633 538 PRTYDLIHADSIFSLYKDRCE--MEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 538 p~t~Dl~H~~~lfs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.++||+|-.+- |.-...... -...+-.+.|.|+|+|.++..
T Consensus 147 ~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 147 NRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 36899987643 332111111 146788899999999999884
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.33 Score=42.99 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=61.2
Q ss_pred hcccCCCCCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCC
Q 006633 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPS 280 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd 280 (637)
.+..+++ +||=+|||. |.++..+++. +. .++-+ |.++..+++|++.|....+...+ .... -..
T Consensus 22 ~~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~---d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 22 GGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVT---DLSATRLSKAKEIGADLVLQISK-ESPQEIARKVEGQLG 95 (171)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHT
T ss_pred hCCCCCC--EEEEECCCccHHHHHHHHHHcCCceEEec---cCCHHHHHHHHHhCCcccccccc-cccccccccccccCC
Confidence 3445544 899999985 4555566654 54 34444 55677888888877654433211 1100 012
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+|+|+-.- -....++...+.+|+||.+++.+.
T Consensus 96 ~g~Dvvid~~--------G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 96 CKPEVTIECT--------GAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SCCSEEEECS--------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceEEEecc--------CCchhHHHHHHHhcCCCEEEEEec
Confidence 4689988643 234578899999999999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.60 E-value=0.32 Score=43.31 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHhcccCCCCCEEEEECCCC-chHHHHHhhc-CCE-EEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----CCCC
Q 006633 209 GKLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPS 280 (637)
Q Consensus 209 ~~lL~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v~-~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----pfpd 280 (637)
.+..+..+++ +||=+|||. |..+..+++. +.. ++-. +.++...+++++.|....+. .+.... .+.+
T Consensus 21 ~~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~~---~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 21 INALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAV---DIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITD 94 (174)
T ss_dssp HTTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEE---ESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTT
T ss_pred HHhhCCCCCC--EEEEeCCCHHHhhhhhcccccccceeeee---ccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcC
Confidence 3344455544 899999984 4455566654 432 2222 44556777887777543332 111111 1234
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.||+|+-.- -....+++..++|||+|.+++.+-
T Consensus 95 gg~D~vid~~--------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 95 GGVNFALEST--------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp SCEEEEEECS--------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCcEEEEcC--------CcHHHHHHHHhcccCceEEEEEee
Confidence 5799998432 234578899999999999999763
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.55 E-value=0.33 Score=48.10 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=75.9
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-------------~wce~~~~yp~t~ 541 (637)
...++||-+|.|-|+.+..+.+. +|--+-+|..|. ..+.++.+- ....+ |--+-+..-++.|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~--~Vv~~a~~~--~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE--MVIDVAKKF--LPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH--HHHHHHHHH--CTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccH--HHHHHHHhh--chhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 45889999999999999999885 564444555554 355554431 11111 1001112246789
Q ss_pred ceeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcce
Q 006633 542 DLIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREK 613 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~ 613 (637)
|+|-.+.--...... ---...+-.+.|+|+|||.++..- ..+.+..+.+..+..=..+..+-. -.-|.+.-.
T Consensus 181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~ 260 (312)
T d2b2ca1 181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMG 260 (312)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEE
T ss_pred CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccce
Confidence 998875322211111 111366778899999999999962 234444455444443334433221 111112345
Q ss_pred EEEEEec
Q 006633 614 ILFANKK 620 (637)
Q Consensus 614 ~l~~~K~ 620 (637)
.++|.|.
T Consensus 261 f~~aSk~ 267 (312)
T d2b2ca1 261 YLICAKN 267 (312)
T ss_dssp EEEEESS
T ss_pred eeEEECC
Confidence 7888775
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.12 Score=45.83 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=58.6
Q ss_pred HhcccCCCCCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEe
Q 006633 211 LINLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
.....+++ +||=+|+| .|.++..+++. +...+-++ .+....+++++-|....+...+........+.+|.|+-
T Consensus 25 ~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i~~~---~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 25 HWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAFT---TSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEE---SSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred HhCCCCCC--EEEEeccchHHHHHHHHhhcccccchhhc---cchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence 34455555 89889987 46777777765 65555442 23334456777775543321111111123357999885
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.-.- . ..+....+.|+|||.+++.+
T Consensus 100 ~~g~---~-----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 100 TVAA---P-----HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp CCSS---C-----CCHHHHHTTEEEEEEEEECC
T ss_pred eeec---c-----hhHHHHHHHHhcCCEEEEec
Confidence 4321 1 24577789999999999975
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.08 E-value=0.23 Score=43.68 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=58.9
Q ss_pred hcccCCCCCEEEEECCCC-chHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCee
Q 006633 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFD 284 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----pfpd~sFD 284 (637)
...++++ +||=+|+|. |.++..+++. +..++.+ +.++...+.+++-|....+.. ..... ....+.+|
T Consensus 23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~-~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNA-RQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEET-TTSCHHHHHHHHHSSEEE
T ss_pred hCCCCCC--EEEEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccc-cchhHHHHHHHhhcCCcc
Confidence 4455555 888899884 5666666665 6666666 556777788888775433321 11110 01123345
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.|.+.. ....+....+.|+|||.+++.+.
T Consensus 97 ~i~~~~---------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 97 VLVTAV---------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EEECCS---------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred cccccc---------cchHHHHHHHHhcCCcEEEEEEe
Confidence 555432 23467889999999999999763
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.34 Score=47.28 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=62.1
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc------c----cchhh-ccccccCCCCCccce
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTYQ-NWCEAMSTYPRTYDL 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----~~~~~-~wce~~~~yp~t~Dl 543 (637)
...++||-+|.|.|+.+..+.+. ++--+-+|..|. ..++++.+-- + +-+++ |-=+-+..-++.||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~--~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE--DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH--HHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 45789999999999999999987 565555566664 4666654421 1 11111 111222235688999
Q ss_pred eeeccccccCC-CCcCH-HHHHHHHhhcccCCcEEEEE
Q 006633 544 IHADSIFSLYK-DRCEM-EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 544 ~H~~~lfs~~~-~~c~~-~~~l~e~dRiLrPgG~~i~~ 579 (637)
|-.+ +|.-.. ..-.. ...+-.+.|.|+|||.+++.
T Consensus 155 Ii~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 155 IITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 9886 343221 11111 25678889999999999986
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=87.66 E-value=0.14 Score=46.57 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=57.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc---chhhccccccC-CC---CCccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI---GTYQNWCEAMS-TY---PRTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~~wce~~~-~y---p~t~Dl~H 545 (637)
...+|||+.||+|++|-..++++. ..|+-+|.+...+.++.+- |+. .+++.-+..+. .+ -..||+|=
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 357899999999999998888875 3444556665566665432 332 22221111111 11 24799987
Q ss_pred eccccccCCCCcCHHHHHHHHh--hcccCCcEEEEE
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMD--RILRPEGSVIIR 579 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~ 579 (637)
+|==|. .-..+.+|-.+. .+|.|+|.+|+-
T Consensus 119 lDPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 743332 123455555543 589999999884
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=87.46 E-value=0.53 Score=45.11 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=58.2
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEecc----CCCCc-chhHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006633 480 NLLDMNAYLGGFAAALVDD-PLWVMNTVP----VEAKI-NTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~----~~~~~-~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
+|+|.|||-||+.-+++++ +| +.|.. .+.++ ......+..+++...- =-.-+..-|.-.|+|-||--=|.
T Consensus 69 ~vvDlG~~pGgws~~~a~~~~v--~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~-~~dv~~l~~~~~D~vlcDm~ess- 144 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLKNV--REVKGLTKGGPGHEEPIPMSTYGWNLVRLQS-GVDVFFIPPERCDTLLCDIGESS- 144 (257)
T ss_dssp EEEEETCTTSHHHHHHHTSTTE--EEEEEECCCSTTSCCCCCCCSTTGGGEEEEC-SCCTTTSCCCCCSEEEECCCCCC-
T ss_pred eEEEecCCCChHHHHHHhhcCC--CceeEEEecCccccCCccccccccccccchh-hhhHHhcCCCcCCEEEeeCCCCC-
Confidence 6899999999999999876 34 23322 22221 1222222333332110 00011112477888888632221
Q ss_pred CCCcCHH-----HHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHh
Q 006633 554 KDRCEME-----DVLLEMDRILRPEGSVIIRD----DVDILVKIKSITD 593 (637)
Q Consensus 554 ~~~c~~~-----~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~ 593 (637)
..-.++ .+|-=+.++|+|||.|++-- ..+++++++.+-.
T Consensus 145 -~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~ 192 (257)
T d2p41a1 145 -PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR 192 (257)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred -CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHH
Confidence 111122 33333368999999999972 4567776666543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=87.39 E-value=2.2 Score=41.50 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-------------~wce~~~~yp~t~ 541 (637)
...++||=+|.|-|+.+..+.+. ++--+-+|..|. ..++++.+- ++..+ |.-+-+...++.|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp--~Vi~~a~~~--~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 163 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG--LVIEAARKY--LKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 163 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH--HHHHHHHHH--CHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHH--HHhhcccccCCCcEEEhhhHHHHHhcCCCCC
Confidence 45899999999999999999886 453344455554 356655442 11111 1112234467889
Q ss_pred ceeeeccccccCCCCcC--HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcc
Q 006633 542 DLIHADSIFSLYKDRCE--MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQRE 612 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~ 612 (637)
|+|-++..-......+. -...+-.+-|.|+|||.++..- ..+.+..+.+.+++.=-.+..+-. -.-+.+.-
T Consensus 164 DvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w 243 (295)
T d1inla_ 164 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMW 243 (295)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEE
T ss_pred CEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCccc
Confidence 99987633221111111 2478889999999999999852 222333333322222222222111 11122344
Q ss_pred eEEEEEecC
Q 006633 613 KILFANKKY 621 (637)
Q Consensus 613 ~~l~~~K~~ 621 (637)
.+++|.|..
T Consensus 244 ~f~~aSk~~ 252 (295)
T d1inla_ 244 SYTFASKGI 252 (295)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 788888865
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=86.46 E-value=3.1 Score=39.81 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc-----c-----cchhh-ccccccCCCCCccce
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG-----L-----IGTYQ-NWCEAMSTYPRTYDL 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg-----l-----~~~~~-~wce~~~~yp~t~Dl 543 (637)
...++||-+|.|.|+.++.+.++ ++--+.+|..|.. .++++.+-- . +-++. |--+-+....+.||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~--Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK--VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH--HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH--HHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 45789999999999999999886 5655556666654 555554321 0 01111 111222334688999
Q ss_pred eeeccccccCCCCcC--HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccCCCC--CCcceE
Q 006633 544 IHADSIFSLYKDRCE--MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGP--RQREKI 614 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~--~~~~~~ 614 (637)
|-.+. +.-....-. -...+-.+-|+|+|+|.++..- ..+.+..+.+.++..=-.+..+...--+ .+...+
T Consensus 152 Ii~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f 230 (274)
T d1iy9a_ 152 IMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (274)
T ss_dssp EEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEE
Confidence 98763 321111111 1366777899999999999852 2344455555444433344433221111 123467
Q ss_pred EEEEecC
Q 006633 615 LFANKKY 621 (637)
Q Consensus 615 l~~~K~~ 621 (637)
++|.|.+
T Consensus 231 ~~aS~~~ 237 (274)
T d1iy9a_ 231 TIGSKKY 237 (274)
T ss_dssp EEEESSC
T ss_pred EEEcCCC
Confidence 7788764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=86.06 E-value=0.7 Score=41.29 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=61.2
Q ss_pred HhcccCCCCCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC------CCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL------PYPSR 281 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L------pfpd~ 281 (637)
....++++ +||=+|||. |.++..+++. +. .++-. |.++...++|++-|....+........ -...+
T Consensus 23 ~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~---d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 23 TAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAI---DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred hhCCCCCC--EEEEECCChHHHHHHHHHHHhCCceeeee---ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 33445544 899999996 7778777776 43 23333 334456678888775544321111100 01235
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCC-eEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPG-GYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPG-G~Lvls~p 322 (637)
.+|+|+-.- -....+.+..+.|++| |.+++.+.
T Consensus 98 G~d~vie~~--------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCA--------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESS--------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEec--------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 689997432 2455789999999996 99999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.09 E-value=0.59 Score=41.04 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=59.3
Q ss_pred hcccCCCCCEEEEECCC--CchHHHHHhhc-C-CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC------CCCCC
Q 006633 212 INLKDGSIRTAIDTGCG--VASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL------PYPSR 281 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCG--tG~~a~~La~~-~-v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L------pfpd~ 281 (637)
.+..+++ +||=+||+ .|..+..+++. + ..++-+ +.++...+++++.|....+. .+.... -...+
T Consensus 23 ~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~---~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 23 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGV---DVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESK 96 (170)
T ss_dssp TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEE---ESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTS
T ss_pred hCCCCCC--EEEEEeccccceeeeeeccccccccccccc---ccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcc
Confidence 3444544 89999973 45656655554 4 344444 44566777887777543332 111111 01245
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.||+|+... -....++...+.|+|||.+++.+-
T Consensus 97 ~~d~vid~~--------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 97 GVDAVIDLN--------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp CEEEEEESC--------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred cchhhhccc--------ccchHHHhhhhhcccCCEEEEecc
Confidence 699998643 234567888999999999998853
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.62 E-value=0.68 Score=40.23 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=57.8
Q ss_pred hcccCCCCCEEEEECCCC-chHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccc---cCC-CCCCCeeE
Q 006633 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RLP-YPSRAFDM 285 (637)
Q Consensus 212 L~~~~g~~r~VLDIGCGt-G~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~---~Lp-fpd~sFDl 285 (637)
....+++ +||=.|+|. |..+..+++. +..++.+ +.++...+++++.|....+...+.. .+. ...+.+|.
T Consensus 23 ~~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 23 TGAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp HTCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred hCCCCCC--EEEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceE
Confidence 3445554 888899985 4555555554 6666665 4456677788877754433211100 000 11234455
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|++.. ....+....+.|+|||.+++.+-
T Consensus 98 v~~~~---------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 98 VVTAV---------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EESSC---------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EeecC---------CHHHHHHHHHHhccCCceEeccc
Confidence 54321 24578999999999999999753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.30 E-value=1 Score=43.84 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=62.9
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhc------c----cchh-hccccccCCCC-Cccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTY-QNWCEAMSTYP-RTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----~~~~-~~wce~~~~yp-~t~D 542 (637)
.+.++||=+|.|-|+.+.++.+. ++-.+-+|..|.. .++++.+-- + +-++ .|--+-+...+ +.||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~--Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM--VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHH--HHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 45789999999999999999886 6644555666553 555553311 0 0011 11112233455 5899
Q ss_pred eeeeccccccCC--CCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 543 LIHADSIFSLYK--DRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 543 l~H~~~lfs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+|-.+ +|.-.. .+---...+-.+.|+|+|||.++..
T Consensus 157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 98864 333211 1111247888899999999999995
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.22 E-value=2.7 Score=36.68 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=57.4
Q ss_pred cCCCCCEEEEECCCC-chHHHHHhhc-C-CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC-----CCCCCeeEE
Q 006633 215 KDGSIRTAIDTGCGV-ASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----YPSRAFDMA 286 (637)
Q Consensus 215 ~~g~~r~VLDIGCGt-G~~a~~La~~-~-v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp-----fpd~sFDlV 286 (637)
.+++ +||=+|+|. |.++..+++. + ..++.+ +.++...+++++.+....+. .+..... ...+.+|+|
T Consensus 31 ~~g~--~vli~GaG~vG~~~~~~a~~~g~~~vv~~---~~~~~k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 31 YPGA--YVAIVGVGGLGHIAVQLLKVMTPATVIAL---DVKEEKLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEEE---ESSHHHHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCC--EEEEeCCChHHHHHHHHHHhhcCcccccc---cchhHHHHHHhhcccceeec-CcccHHHHHHHhhCCCCceEE
Confidence 4444 899999985 4555566654 3 233433 44556777787776443322 1111100 123459998
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+-.- -....++...+.|++||.+++.+.
T Consensus 105 id~~--------g~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFV--------GSQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESS--------CCHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEec--------CcchHHHHHHHHHhCCCEEEEEeC
Confidence 8543 234478899999999999999864
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.95 E-value=0.62 Score=41.20 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=59.3
Q ss_pred HHhcccCCCCCEEEEECC--CCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC------CCC
Q 006633 210 KLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YPS 280 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGC--GtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp------fpd 280 (637)
+.....+++ +||=.|. |+|.++..+++. +..++.++. +.+..+.+++.|....+. .....+. ...
T Consensus 19 ~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 19 EVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD-SRSVDFADEILELTDG 92 (183)
T ss_dssp TTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTT
T ss_pred HHhCCCCCC--EEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc-CCccCHHHHHHHHhCC
Confidence 333344444 8998873 356777777766 666665532 334566777776553332 1111110 134
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..||+|+..-. ...+.++.++|+++|.++..+
T Consensus 93 ~g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 93 YGVDVVLNSLA---------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CCEEEEEECCC---------THHHHHHHHTEEEEEEEEECS
T ss_pred CCEEEEEeccc---------chHHHHHHHHhcCCCEEEEEc
Confidence 67999997532 236788899999999999874
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=82.98 E-value=0.58 Score=44.80 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-------CCeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-------VPALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-------~~~~~~~~d~~~ 275 (637)
.|.+.+..+.+...+|||.-||.|..+..|+..+..++.+...-.-.+.++.+.++ . ..+.+..+|...
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~ 156 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence 35566665655555899999999999999998865555443222222333322222 1 135677777543
Q ss_pred -CCCCCCCeeEEEecccc
Q 006633 276 -LPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 276 -Lpfpd~sFDlV~~s~~L 292 (637)
+.-....||+|+.-..+
T Consensus 157 ~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HSTTCSSCCSEEEECCCC
T ss_pred HHhccCCCCCEEEECCCC
Confidence 33335679999987766
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=82.96 E-value=2.2 Score=40.31 Aligned_cols=43 Identities=9% Similarity=-0.068 Sum_probs=31.7
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
...-.|||-=||.|+.|+|-.+.+- +.+..+..+...+++.+|
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFR 291 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGG
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHH
Confidence 3457999999999988777665543 445556666788888888
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.80 E-value=2.2 Score=40.24 Aligned_cols=121 Identities=9% Similarity=-0.062 Sum_probs=72.8
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCC----CC-Ccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMST----YP-RTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~----yp-~t~ 541 (637)
....+|||+|||.|.-+..|+.+ += .+++.+|-++..+.++.+- +| +-++| +|-+.+.. .. ..|
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~--~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNG--WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred cccceEEEeCCCchHHHHHHHHhCCC--ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence 45789999999999999988764 22 2566777776777776553 23 22333 22222211 12 579
Q ss_pred ceeeeccccccCC----------------------CC----------cCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHH
Q 006633 542 DLIHADSIFSLYK----------------------DR----------CEMEDVLLEMDRILRPEGSVIIRD-DVDILVKI 588 (637)
Q Consensus 542 Dl~H~~~lfs~~~----------------------~~----------c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~ 588 (637)
|+|=|+-=|=... .. ..+..++-|--+.++..|++..-- ..+.+..|
T Consensus 138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i 217 (250)
T d2h00a1 138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPL 217 (250)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHH
T ss_pred eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHH
Confidence 9877654431000 00 014456777788899999885432 34566677
Q ss_pred HHHHhcCCce
Q 006633 589 KSITDGMEWE 598 (637)
Q Consensus 589 ~~~~~~~~W~ 598 (637)
+++++.....
T Consensus 218 ~~~L~~~g~~ 227 (250)
T d2h00a1 218 KEELRIQGVP 227 (250)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 7777777663
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=80.77 E-value=1.7 Score=38.52 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHhcccCCCCCEEEEECCCC--chHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc----C-CCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGV--ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----L-PYP 279 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGt--G~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~----L-pfp 279 (637)
|.+..+.++++ +||=.|++. |..+..|++. +..++.++ .+++..+.+++.+....+...+... + ...
T Consensus 21 l~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~---~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 21 LLEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGAA---GSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKAS 95 (182)
T ss_dssp HHTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHC
T ss_pred HHHHhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEEEEeC---CCHHHHHHHHhhhhhhhcccccccHHHHHHHHhh
Confidence 44444555555 899888754 5777778776 77777763 3455667777777554443211100 0 012
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+.+|+|+-.- -...+.+..+.|+|||.+++.+
T Consensus 96 ~~Gvd~v~D~v---------G~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 96 PDGYDCYFDNV---------GGEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp TTCEEEEEESS---------CHHHHHHHGGGEEEEEEEEECC
T ss_pred cCCCceeEEec---------CchhhhhhhhhccCCCeEEeec
Confidence 35699998632 2347889999999999999975
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.58 E-value=1.5 Score=43.03 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCceeEeeecccchhhhhhhc----CCCeEEEEeccCCCCcchhHH---HHhh-cccchh--hccccccCCCCCccceee
Q 006633 476 GRYRNLLDMNAYLGGFAAALV----DDPLWVMNTVPVEAKINTLGV---IYER-GLIGTY--QNWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~---~~eR-gl~~~~--~~wce~~~~yp~t~Dl~H 545 (637)
.....||||.||-||=+.+|+ .....+.| |.+...+.. .++| |+..+. ++--..+..++..||.|-
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~----d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF----DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEE----CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeee----ccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEE
Confidence 335689999999999544443 34443333 222233332 2233 443322 211122233457899754
Q ss_pred ----ec--cccccC-----C-CCcCHH-------HHHHHHhhcccCCcEEEEE
Q 006633 546 ----AD--SIFSLY-----K-DRCEME-------DVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 546 ----~~--~lfs~~-----~-~~c~~~-------~~l~e~dRiLrPgG~~i~~ 579 (637)
|+ |++... . ..-++. .||...-+.|||||++|.+
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 33 333211 0 111111 6788888999999999987
|