Citrus Sinensis ID: 006640
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 637 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GZ63 | 574 | Pentatricopeptide repeat- | yes | no | 0.874 | 0.970 | 0.577 | 0.0 | |
| Q8S9D1 | 831 | Pentatricopeptide repeat- | no | no | 0.745 | 0.571 | 0.569 | 1e-161 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.701 | 0.565 | 0.261 | 2e-57 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.711 | 0.757 | 0.275 | 2e-56 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.718 | 0.718 | 0.278 | 1e-55 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.596 | 0.671 | 0.288 | 2e-55 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.704 | 0.605 | 0.262 | 4e-54 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.775 | 0.539 | 0.274 | 9e-54 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.687 | 0.696 | 0.272 | 9e-54 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.692 | 0.718 | 0.259 | 5e-53 |
| >sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/608 (57%), Positives = 435/608 (71%), Gaps = 51/608 (8%)
Query: 41 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
EKK++ S+P S P C C+ SCRTVRS TKLMN LIERG+P EAQ
Sbjct: 7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQT 66
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
+F L E GH+PSL++YTTLLAA+T+QK++ SI SI+S+VE++G DSIFFNAVINAFS
Sbjct: 67 VFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFS 126
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK--P 211
ESGNME+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S +LLDLM EGNV P
Sbjct: 127 ESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGP 186
Query: 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271
N+RT+NVLV+AWC +K + EAW V+ KM G++PD VTYNTIAT Y Q GE +AE +
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEV 246
Query: 272 VE--MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329
VE + +PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFV
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389
E+MDRDG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAH
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
AYSILAKGYVR +EP+KAEELL T+I PNVVIFTT+ISGWCS+GSMD A+ VF+KM
Sbjct: 367 AYSILAKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKM 425
Query: 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
C+ GVSPN+KTFETLMWGY E +QPW+AEE+LQ+M+ GV P+ STFLLLAEA R GLT
Sbjct: 426 CKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT 485
Query: 510 KEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGS 569
E+ + ++ +K K DI + LE+LY K+++ +S+ NLLQIP V + +
Sbjct: 486 DESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPT 532
Query: 570 AAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLAN 629
A A M LS +CK GAR+PIICQKQ Q G+ Q +
Sbjct: 533 AKA------------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVH 567
Query: 630 SCTVVFLN 637
SCT VFL+
Sbjct: 568 SCT-VFLS 574
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/478 (56%), Positives = 362/478 (75%), Gaps = 3/478 (0%)
Query: 35 KKNNPGEKKQLYSNSKPTDSQPQTH-CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
K+ N + + ++ +S+ Q ++ C C +C VRS TKLMN LIERG+PQEA +
Sbjct: 281 KEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHS 340
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
IFN LIE GHKPSL+TYTTL+ ALT QK F+S+ S++S+VE+NG+ PD+I FNA+INA S
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL 213
ESGN+++AM F KMKESG PT ST+NTLIKGYG GK EES +LLD+M R+ ++PN
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460
Query: 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV- 272
RT N+LV+AWCN++ I EAWN+++KM + G+KPDVVT+NT+A AYA+ G AE++I+
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520
Query: 273 EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332
M HN V+PN RTCG I++GYC+EGK++EALRF MKE GVHPNL +FN LIKGF+ I
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580
Query: 333 DRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392
D DGV EV+ LM+EF V PDV+T+ST+MNAWS+ G M +C+EI+ DM + GI PD HA+S
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640
Query: 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE- 451
ILAKGY R EPEKAE++L M + G PNVVI+T IISGWCS G M +A++V+ KMC
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI 700
Query: 452 HGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
G+SPNL T+ETL+WG+ EA+QPW+AEE+L+ M+ V P + T L+A+ ++ G++
Sbjct: 701 VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIGVS 758
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 242/448 (54%), Gaps = 1/448 (0%)
Query: 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMS 131
V S T ++N + G +A + ++ +++ G P +VTY +++AAL + + +++
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255
Query: 132 QVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191
+ +NG+ PD + +N++++ + SG +EA+ KM+ G+ P TY+ L+ G
Sbjct: 256 TMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNG 315
Query: 192 KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTY 251
+ E+ K+ D M++ G +KP + TY L++ + + + E ++ M +G+ PD +
Sbjct: 316 RCMEARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374
Query: 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311
+ + AYA+ G+ DQA V +M G+ PN T G +I CK G++++A+ + M +
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434
Query: 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371
G+ P +++N LI G + +E++ M + + + I +++I+++ G + +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 494
Query: 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431
+++F+ M + G+KP+ Y+ L GY + ++A +LL M+ G PN V ++T+I+
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554
Query: 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491
G+C M+ A+ +F +M GVSP++ T+ ++ G + R+ A+E+ + G
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614
Query: 492 QKSTFLLLAEARRATGLTKEAKRILSKI 519
+ ST+ ++ LT +A ++ +
Sbjct: 615 ELSTYNIILHGLCKNKLTDDALQMFQNL 642
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 227/457 (49%), Gaps = 4/457 (0%)
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
T L+ GK ++A I L G P ++TY +++ N+ S++ ++
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS- 199
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
+ PD + +N ++ + +SG +++AM+ +M + P TY LI+
Sbjct: 200 --VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH 257
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
++KLLD M R+ P++ TYNVLV C E + EA ++ M +SG +P+V+T+N I
Sbjct: 258 AMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
+ G AE+++ +M G P+ T I+I+ C++G + A+ M ++G
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PN + +N L+ GF + D E L M PD++TY+T++ A G ++ EI
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
+ + G P Y+ + G + + KA +LL M P+ + +++++ G
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
+G +D AI+ F + G+ PN TF ++M G ++RQ RA + L M G P +++
Sbjct: 497 EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEE 532
+ +L E G+ KEA +L+++ NK + AE+
Sbjct: 557 YTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQ 593
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 239/464 (51%), Gaps = 6/464 (1%)
Query: 61 SFCMNKE----SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA 116
SFC + S R + +L + L++ K +A +F ++I P+++ ++ L +A
Sbjct: 39 SFCCERGFSAFSDRNLSYRERLRSGLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSA 97
Query: 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT 176
+ K+++ + ++ Q+E G+ + + +IN F + A K+ + G P
Sbjct: 98 IAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPN 157
Query: 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236
T T++TLI G + G+ E+++L+D M G+ KP+L T N LV C EA ++
Sbjct: 158 TITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSGKEAEAMLLI 216
Query: 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE 296
KM G +P+ VTY + ++G+ A E++ +ME ++ + III G CK
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276
Query: 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITY 356
G + A M+ G+ N++ +N+LI GF D ++L M + ++NP+V+T+
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416
S +++++ G + + +E+ +M GI PD Y+ L G+ +E +KA +++ M+
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476
G PN+ F +I+G+C +D +E+F KM GV + T+ TL+ G+ E +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 477 AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
A+E+ Q M + V P T+ +L + G +++A I KI+
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 213/385 (55%), Gaps = 5/385 (1%)
Query: 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS 178
I+K F+ ++ ++ E G P+ + + +I+ + G +E+A D F++M + GL
Sbjct: 179 IEKSFD----LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANER 234
Query: 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238
TY LI G G ++ ++ + M +G V PNL TYN ++ C + +A+ V +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 239 MAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298
M G+ ++VTYNT+ + + ++A +V+ +M+ +G+ PN T +I G+C GK
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST 358
+ +AL R +K G+ P+LV +N+L+ GF D G +++ M+E + P +TY+
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418
+++ ++ + M+K ++ M + G+ PD H YS+L G+ + + +A L +M+E
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478
PN VI+ T+I G+C +GS RA+++ +M E ++PN+ ++ ++ + R+ AE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533
Query: 479 EILQIMKAFGVHPQKSTFLLLAEAR 503
+++ M G+ P S L++ A+
Sbjct: 534 RLVEKMIDSGIDPSTSILSLISRAK 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/458 (26%), Positives = 224/458 (48%), Gaps = 9/458 (1%)
Query: 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHS 128
C V S +++ + + G+ +EA + + G+ P +++Y+T++ + +
Sbjct: 243 CWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWK 302
Query: 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188
++ ++ G+ P+S + ++I + EA + F +M G+ P T Y TLI G+
Sbjct: 303 LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC 362
Query: 189 IAGKPEESVKLL-DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD 247
G + K ++ SR+ + P++ TY ++ +C ++ EA + H+M G++PD
Sbjct: 363 KRGDIRAASKFFYEMHSRD--ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307
VT+ + Y + G A V M G PN T +I G CKEG + A
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR---VNPDVITYSTIMNAWS 364
M + G+ PN+ +N ++ G + ++E + L+ EF +N D +TY+T+M+A+
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCK---SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 537
Query: 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424
+G MDK +EI +M G++P +++L G+ E E+LL M+ G PN
Sbjct: 538 KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 597
Query: 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484
F +++ +C ++ A ++ MC GV P+ KT+E L+ G+ +AR A + Q M
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657
Query: 485 KAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522
K G ST+ +L + EA+ + +++ +
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 144/525 (27%), Positives = 257/525 (48%), Gaps = 31/525 (5%)
Query: 41 EKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIE 100
++K L S K + P C R + T L++ L + EA +F + +
Sbjct: 265 QRKDLDSAFKVFNEMPLKGCR--------RNEVAYTHLIHGLCVARRIDEAMDLFVKMKD 316
Query: 101 GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160
P++ TYT L+ +L +R + +++ ++EE G+ P+ + +I++ E+
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEK 376
Query: 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220
A + +M E GL P TYN LI GY G E++V +++LM + PN RTYN L+
Sbjct: 377 ARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR-KLSPNTRTYNELI 435
Query: 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280
+ +C + N+ +A V++KM + PDVVTYN++ ++G D A ++ M G+
Sbjct: 436 KGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340
P+ T +I CK +++EA ++++ GV+PN+V++ LI G+ + D +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
L M P+ +T++ +++ G + + + + M K G++P +IL ++
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
Query: 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460
+ + + A M+ SG P+ +TT I +C +G + A ++ KM E+GVSP+L T
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFT 674
Query: 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
+ +L+ GY + Q A ++L+ M+ G P + TFL L K +L
Sbjct: 675 YSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL------------IKHLLEMKY 722
Query: 521 NKERTNEME-------AEEDIPVESLERLYHKEAT--TASYPNLL 556
K++ +E E E D VE LE++ T SY L+
Sbjct: 723 GKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 227/441 (51%), Gaps = 3/441 (0%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG 137
L++ L K EA A+ + ++ G +P L TY T++ L + + S++ ++E+
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
++ D + + +I+A N+ +A++ F +M G+ P TYN+LI+ G+ ++
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 198 KLL-DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256
+LL D++ R+ N PN+ T++ L+ A+ E + EA + +M + PD+ TY+++
Sbjct: 311 RLLSDMIERKIN--PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 257 AYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP 316
+ + D+A+ + M PN T +I G+CK +++E + R M + G+
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
N V +N LI+G + D D ++ M V PD+ITYS +++ G ++K +F
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
+ + K+ ++PD + Y+I+ +G + + E +L ++ G PNV+I+TT+ISG+C
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G + A +F +M E G PN T+ TL+ + E+++ M++ G ST
Sbjct: 549 GLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608
Query: 497 LLLAEARRATGLTKEAKRILS 517
++ L K +LS
Sbjct: 609 SMVINMLHDGRLEKSYLEMLS 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 225/444 (50%), Gaps = 3/444 (0%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG 137
++N L R + A AI +++ G+ PS+VT +LL R + +++ Q+ E G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
PD++ F +++ + EA+ +M G P TY +I G G+P+ ++
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATA 257
LL+ M + G ++ ++ Y+ ++ + C +++ +A N+ +M G++PDV TY+++ +
Sbjct: 226 NLLNKMEK-GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317
G A ++ +M + PN T +I + KEGK+ EA + M + + PN
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 318 LVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
+V +N LI GF + DR D ++ LM PDV+TY+T++N + A + E+F
Sbjct: 345 IVTYNSLINGFC-MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
DM + G+ + Y+ L G+ + + + A+ + M+ G HPN++ + T++ G C +
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G +++A+ VF+ + + + P++ T+ + G +A + ++ + GV P +
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 497 LLLAEARRATGLTKEAKRILSKIK 520
+ GL +EA + K+K
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMK 547
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 637 | ||||||
| 225430029 | 635 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.976 | 0.691 | 0.0 | |
| 147812173 | 635 | hypothetical protein VITISV_033966 [Viti | 0.973 | 0.976 | 0.684 | 0.0 | |
| 224143015 | 552 | predicted protein [Populus trichocarpa] | 0.864 | 0.998 | 0.735 | 0.0 | |
| 296081889 | 608 | unnamed protein product [Vitis vinifera] | 0.930 | 0.975 | 0.663 | 0.0 | |
| 225445222 | 636 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.998 | 0.605 | 0.0 | |
| 356554513 | 632 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 1.0 | 0.602 | 0.0 | |
| 297808589 | 568 | pentatricopeptide repeat-containing prot | 0.874 | 0.980 | 0.585 | 0.0 | |
| 255546465 | 608 | pentatricopeptide repeat-containing prot | 0.907 | 0.950 | 0.587 | 0.0 | |
| 30689969 | 574 | pentatricopeptide repeat-containing prot | 0.874 | 0.970 | 0.577 | 0.0 | |
| 26449475 | 574 | unknown protein [Arabidopsis thaliana] g | 0.874 | 0.970 | 0.575 | 0.0 |
| >gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/622 (69%), Positives = 516/622 (82%), Gaps = 2/622 (0%)
Query: 16 KYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSM 75
++Q G+T VKK + + + K +L+ S+ D Q Q C C++K SCRTVRS
Sbjct: 16 EHQDGTTDVKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSR 75
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
TKLMN +IE+G+PQE Q+I +++IEGGHKPSLVTYTTLLAALTIQK F+SIHSI+SQVEE
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
NGM+PDSIFFNAVINAFSESGNM+EAM FWKMKESG PTTST+NTLIKGYGIAG+PEE
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S KLL+LMS++ NV+PNLRTYNVLVRAWCN+KNI +AWNV++KM ASG++PD VTYNTIA
Sbjct: 196 SQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIA 255
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
TAYAQNGEA QAE +I+EM+++ VQPN RTC III GYCKEGKIKEAL+F MK+ G+
Sbjct: 256 TAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQ 315
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PNLV+FN LIKGF++ +DRDGV+EVL LM+EF V PDVIT+STIMNAWS AGFMDKC+EI
Sbjct: 316 PNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
FDDM KA I+PDAH YSILAKGYVR EPEKAEE+L MI+SGFHPNVVIFTTII+GWCS
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCS 435
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
G M+ AI++F+KMCE G++PNLKTFETL+WGY EARQPW++EE+LQIM+ F V P+K+T
Sbjct: 436 AGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTT 495
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNL 555
LL+AEA RATGL KEA RILS +KN+E T+E + E+ IPV SLE+ Y K +AS+PN
Sbjct: 496 LLLVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQK--PSASFPNQ 553
Query: 556 LQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615
LQ+PN+V SDQKGS +A K+ RM+L D D SLE SW AT S+ L+HSC GAR PIICQK
Sbjct: 554 LQLPNLVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQK 613
Query: 616 QPLGQVGMYSQLANSCTVVFLN 637
Q GQ+ MYSQLA+SC +VFLN
Sbjct: 614 QSHGQLCMYSQLAHSCPLVFLN 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/622 (68%), Positives = 513/622 (82%), Gaps = 2/622 (0%)
Query: 16 KYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSM 75
++Q G+T KK + + + K +L+ S+ D Q Q C C++K SCRTVRS
Sbjct: 16 EHQDGTTDAKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSR 75
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
TKLMN +IE+G+PQE Q+I +++IEGGHKPSLVTYTTLLAALTIQK F+SIHSI+SQVEE
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
NGM+PDSIFFNAVINAFSESGNM+EAM FWKMKESG PTTST+NTLIKGYGIAG+PEE
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S KLL+LMS++ NV+PNLRTYNVLVRAWCN+ NI +AWNV++KM ASG++PD VTYNTIA
Sbjct: 196 SQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIA 255
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
TAYAQNGEA QAE +I+EM+++ VQPN RTC III GYCKEGKIKEAL+F MK+ G+
Sbjct: 256 TAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQ 315
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PNLV+FN LIKGF++ +DRDGV+EVL LM+EF V PDVIT+STIMNAWS AGFMDKC+EI
Sbjct: 316 PNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
FDDM KA I+PDAH YSILAKGYVR EPEKAEE+L MI+SGFHPNVV+FTTII+GWCS
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCS 435
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
G M+ AI++F+KMCE G++PNLKTFETL+WGY EARQPW++EE+LQIM+ F V P+K+T
Sbjct: 436 AGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTT 495
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNL 555
LL+AEA RATGL KEA RILS +KN+E T+E + E+ IPV S E+ Y K +AS+PN
Sbjct: 496 LLLVAEAWRATGLKKEANRILSAVKNEETTHETDREDKIPVGSSEKHYQK--PSASFPNQ 553
Query: 556 LQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615
LQ+PN+V SDQKGS +A K+ RM+L D D SLE SW AT S+ L+HSC GAR PIICQK
Sbjct: 554 LQLPNLVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQK 613
Query: 616 QPLGQVGMYSQLANSCTVVFLN 637
Q GQ+ MYSQLA+SC +VFLN
Sbjct: 614 QSHGQLCMYSQLAHSCPLVFLN 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa] gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/579 (73%), Positives = 483/579 (83%), Gaps = 28/579 (4%)
Query: 60 CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI 119
C FC K+SCRTVRS TKLMN L+E+GKPQEA++IF +LIEGGHKPSL++YTTLLAALT+
Sbjct: 1 CKFCTTKDSCRTVRSRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTM 60
Query: 120 QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTST 179
QKRF+SI+SI+SQVEENGM+PDSIFFNAVINAFSESGNME AM+TFWKM+E+G+ PTTST
Sbjct: 61 QKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTST 120
Query: 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239
YNTLIKGYGIAGKPEESVKLL+LMS+EGNVKPNLRTYNVLVRAWCN+K ITEAWNV++KM
Sbjct: 121 YNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKM 180
Query: 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI 299
ASG++PDVVTYNTIATAYAQ G DQAE VI+EM++NGVQPN RTCGII+SGYCKEG+I
Sbjct: 181 IASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRI 240
Query: 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359
+EALRFA MKE G+HPNLVIFN LIKGFV IMDRDGVDEVL LM+EF V PDVIT+STI
Sbjct: 241 REALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTI 300
Query: 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF 419
MNAWSTAGFM+KC+EIFDDM KAGI+PDAHAYSILAKGYVR QEPEKAEELL TMI+SGF
Sbjct: 301 MNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGF 360
Query: 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479
PNVVIFTT+ISGWCS G MD A+ VFDKMC+ G+SPNLKTFETL+WG++EARQPW+AEE
Sbjct: 361 QPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEE 420
Query: 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEA-EEDIPVES 538
ILQIM F V P+KST LL+AEA RATG+TKEA R+L KE TN EA E++IPV +
Sbjct: 421 ILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLLGTRNRKEMTNRKEALEKEIPVGN 480
Query: 539 LERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMY 598
LE+LY K+ Y N+LQIP+ CSW AT SM
Sbjct: 481 LEKLYQKQTEGVLYSNILQIPST---------------------------CSWLATGSMS 513
Query: 599 LSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFLN 637
LSHSCK G RLPIIC+KQ Q GMY QLA SCT VFLN
Sbjct: 514 LSHSCKFGLRLPIICRKQSQAQHGMYGQLAQSCTAVFLN 552
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/622 (66%), Positives = 496/622 (79%), Gaps = 29/622 (4%)
Query: 16 KYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSM 75
++Q G+T VKK + + + K +L+ S+ D Q Q C C++K SCRTVRS
Sbjct: 16 EHQDGTTDVKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSR 75
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
TKLMN +IE+G+PQE Q+I +++IEGGHKPSLVTYTTLLAALTIQK F+SIHSI+SQVEE
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
NGM+PDSIFFNAVINAFSESGNM+EAM FWKMKESG PTTST+NTLIKGYGIAG+PEE
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S KLL+LMS++ NV+PNLRTYNVLVRAWCN+KNI +AWNV++KM ASG++PD VTYNTIA
Sbjct: 196 SQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIA 255
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
TAYAQNGEA QAE +I+EM+++ VQPN RTC III GYCKEGKIKEAL+F MK+ G+
Sbjct: 256 TAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQ 315
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PNLV+FN LIKGF++ +DRDGV+EVL LM+EF V PDVIT+STIMNAWS AGFMDKC+EI
Sbjct: 316 PNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
FDDM KA I+PDAH YSILAKGYVR EPEKAEE+L MI+SGFHPNVVIFTTII+GWCS
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCS 435
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
G M+ AI++F+KMCE G++PNLKTFETL+WGY EARQPW++EE+LQIM+ F V P+K+T
Sbjct: 436 AGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTT 495
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNL 555
LL+AEA RATGL KEA RILS +KN+E T+E + E+ IPV SLE+ Y K +AS+PN
Sbjct: 496 LLLVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQK--PSASFPNQ 553
Query: 556 LQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615
LQ+PN+ SW AT S+ L+HSC GAR PIICQK
Sbjct: 554 LQLPNL---------------------------SSWTATRSLSLTHSCTFGARSPIICQK 586
Query: 616 QPLGQVGMYSQLANSCTVVFLN 637
Q GQ+ MYSQLA+SC +VFLN
Sbjct: 587 QSHGQLCMYSQLAHSCPLVFLN 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222 [Vitis vinifera] gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/636 (60%), Positives = 475/636 (74%), Gaps = 1/636 (0%)
Query: 1 MGKFAEGKAFLQTDDKYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHC 60
MG F + K K++ G+ KK Q ++ EK QL S S DSQ Q+ C
Sbjct: 1 MGGFGKEKVHPVIMSKHRDGTNTSKKRV-QASSVMESPLHEKDQLQSVSTSMDSQIQSRC 59
Query: 61 SFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQ 120
C+ SCRTVRS TKLMN LIE+GKPQEAQ IFN+L E GH+P+L+TYTTLLAALT Q
Sbjct: 60 LVCLGNNSCRTVRSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQ 119
Query: 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTY 180
KRF SI S++S++E+NG+ PDS+FFNA+INAFSESGN++EAM F KMK+ G PTTST+
Sbjct: 120 KRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTF 179
Query: 181 NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240
NTLIKGYG AG PEE +KLLDLMS+E NVKPN RT+N L+RAWCN+K ITEAWNV++KMA
Sbjct: 180 NTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMA 239
Query: 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300
ASG++PDVVTYNT+A AYAQNGE +AE +I+EM++N V PN RTCGIII+GYCKEGK+K
Sbjct: 240 ASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMK 299
Query: 301 EALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360
+ALRF M+ YGVHPNLVIFN LIKGF++I D DGVDE L LM+EF V PDV+T+STIM
Sbjct: 300 DALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIM 359
Query: 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420
NAWS+ G MDKC+EIFDDM KAGI+PD HA+SILAKGYVR EPEKAE LL M +SG
Sbjct: 360 NAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQ 419
Query: 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480
PNVVIFTTIISGWCS G M+ A V++KMCE G+ PNLKTFETL+WGY EA++P +AEE+
Sbjct: 420 PNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEEL 479
Query: 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLE 540
LQIM+ GV P KST L+A+A A GL EAKRI + ++ + E+D+ ESLE
Sbjct: 480 LQIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKNDVEEAPKVMISTKEDDVAAESLE 539
Query: 541 RLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLS 600
R+Y K+ ASY +++Q+P +V +DQ GS AA + RM+++ S E W AT SM+L+
Sbjct: 540 RIYQKQNLKASYSDIVQVPGIVMTDQNGSTAANIRSRMIMKGPGSPPENLWTATKSMFLA 599
Query: 601 HSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFL 636
+ R IC+ Q GQVG+ Q NSC +VFL
Sbjct: 600 QASGFRVRPSFICRTQFQGQVGVCGQCVNSCRLVFL 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/637 (60%), Positives = 471/637 (73%), Gaps = 5/637 (0%)
Query: 1 MGKFAEGKAFLQTDDKYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHC 60
MGK T + QSG+ +KKG K N+ K + +K T+S Q C
Sbjct: 1 MGKPGNDDTDCGTRSRKQSGNNNMKKGLFHSEFDKGNHFDGKNHMNEITKATNSGSQPSC 60
Query: 61 SFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQ 120
+FCM K C+ VRS TK+MN LI+ GKPQEA IF NLIEGGH+PSL TYTTLL ALT Q
Sbjct: 61 TFCMGKNDCQIVRSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQ 120
Query: 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTY 180
K F IHSI+S VEE M PDSIFFNA+INAF+ESGNME+A KMKESGL P+ TY
Sbjct: 121 KYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTY 180
Query: 181 NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240
NTLIKGYGIAGKP+ES+KLLDLMS EGNVKPNL+TYN+L+RA C +NI+EAWNV++KM
Sbjct: 181 NTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMT 240
Query: 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300
ASGM+PDVVT+NTIATAYAQNG+ QAE +I+EM+ N ++PN RTC IIISGYC+EGK++
Sbjct: 241 ASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQ 300
Query: 301 EALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360
EALRF MK+ G+ PNL++ N L+ GFV++MDRDGVDEVL LM+EF++ PDVITYSTIM
Sbjct: 301 EALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIM 360
Query: 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420
NAWS AGF++KCKEI+++M K+G+KPDAHAYSILAKGYVR QE EKAEE+L M +SG H
Sbjct: 361 NAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVH 420
Query: 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480
PNVVIFTT+ISGWCS G MD A+ VFDKM E GVSPNLKTFETL+WGY+EA+QPW+AE +
Sbjct: 421 PNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGM 480
Query: 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLE 540
LQIM+ F V P+KST LL+AEA R G + AK +L +K K N + +++ P + E
Sbjct: 481 LQIMEEFHVQPKKSTILLVAEAWRFAGFKERAKTLLRTVKAK-MANSIGKDDNKPAKMSE 539
Query: 541 RLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLS 600
++Y K T A + +LLQIP++ S+DQKGSA ++ R LLRD ++E T
Sbjct: 540 KIYQKPHTNAPFCSLLQIPSISSTDQKGSALTSRRNRRLLRDG--AVETLLLTTKFKCHP 597
Query: 601 HSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFLN 637
C+ G I+ KQ GQ G Y Q ANSCT VFLN
Sbjct: 598 QICRYGEGFSIM-GKQFQGQHGTY-QFANSCTAVFLN 632
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/603 (58%), Positives = 435/603 (72%), Gaps = 46/603 (7%)
Query: 41 EKKQLYSNSKPTDSQPQTH--CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNL 98
EKK++ S+P S P + C C SCRTVRS TKLMN LIERG+P EAQ +F L
Sbjct: 6 EKKKVLPMSEPEKSTPIKYRFCKSCGEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTL 65
Query: 99 IEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158
E GH+PSL++YTTLLAA+T+QK++ S+ SI+S+VE++G PDSIFFNAVINAFSESGNM
Sbjct: 66 AETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQSGTKPDSIFFNAVINAFSESGNM 125
Query: 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN--VKPNLRTY 216
E+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S LLDLM E N V+PN+RT+
Sbjct: 126 EDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLEESNVDVRPNIRTF 185
Query: 217 NVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE--M 274
NVLV+AWC +K + EAW V+HKM G++PD VTYNTIAT Y Q GE +AE +VE +
Sbjct: 186 NVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMV 245
Query: 275 EHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334
+PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFVE+MDR
Sbjct: 246 MKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDR 305
Query: 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSIL 394
DG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAHAYSIL
Sbjct: 306 DGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 365
Query: 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454
AKGYVR +EP+KAEELL T+I PNVVIFTT+ISGWCS GSMD A+ VF+KMC+ GV
Sbjct: 366 AKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWCSSGSMDDAMRVFNKMCKFGV 424
Query: 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKR 514
SPN+KTFETLMWGY E +QPW+AEE+LQ+M+ FGV P+ STFLLLAEA R GLT E+ +
Sbjct: 425 SPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGFGVKPENSTFLLLAEAWRVAGLTDESNK 484
Query: 515 ILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALK 574
++ +K K DI + LE+LY K+++ +S NLLQIP V + +A A
Sbjct: 485 AINALKCK----------DIEIAKLEKLYQKQSSGSSL-NLLQIP--VGKRELPTAKA-- 529
Query: 575 KGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTVV 634
M LS +CK GAR+PIICQKQ Q G+ Q +SCT V
Sbjct: 530 ----------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVHSCT-V 565
Query: 635 FLN 637
FLN
Sbjct: 566 FLN 568
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/601 (58%), Positives = 443/601 (73%), Gaps = 23/601 (3%)
Query: 41 EKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIE 100
EK Q S DS+ Q+ C C+ K SCRTV S TKLMN LI +GKP EA IF+NL+E
Sbjct: 27 EKDQFQLISPSVDSRVQSRCPVCLGKNSCRTVHSRTKLMNILIGKGKPHEANLIFDNLVE 86
Query: 101 GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160
GH+P+L+TYTTL+AALT K F SI ++S+VEENGM PDSI +NA+INAFSESGN++E
Sbjct: 87 DGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKE 146
Query: 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220
AM F KMK++G PTTST+NTLIKGYG AGKPEE +K+L LMS +G+VKPN RTYN+LV
Sbjct: 147 AMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILV 206
Query: 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280
RAWC++KNI EAWNV+HKM ASG++PDVVTYN +A AYAQ GE +AE++I+EM++ V
Sbjct: 207 RAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVA 266
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340
PN RTCGII++GYCKEG + EALRF MKE GVHPNLVIFN LIKGF++I D DGVDE
Sbjct: 267 PNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEA 326
Query: 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
L LM+E+ V PDVIT+STIMNAWS+AG MDKC+EIF+DM KAGI+PD HA+SILAKGYVR
Sbjct: 327 LTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVR 386
Query: 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460
E E AE +L +M +SG PNVVI TTIISGWCS G M+ A V++KMCE G+SPNLKT
Sbjct: 387 AGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKT 446
Query: 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
FETL+WGY+EARQP +AEE+LQ+M+ GV P+KST L+A+A R GL EAKRI K
Sbjct: 447 FETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAWRNIGLLCEAKRI---TK 503
Query: 521 NKERTNEMEAE---EDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALK-KG 576
+E E+ A+ +IPVESLER+Y + +ASY LQI V + Q GS +A+ +
Sbjct: 504 IEEEDEELYADCKRGEIPVESLERIYRDQNGSASYLKTLQISGEVMTKQNGSTSAVNIRS 563
Query: 577 RMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFL 636
+++LR S SC++ + IIC++ V M +L NSC ++ +
Sbjct: 564 QLVLRRYRS----------------SCQNRKQPLIICRQHCRHCVRMCGKLINSCGMIAI 607
Query: 637 N 637
+
Sbjct: 608 S 608
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/608 (57%), Positives = 435/608 (71%), Gaps = 51/608 (8%)
Query: 41 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
EKK++ S+P S P C C+ SCRTVRS TKLMN LIERG+P EAQ
Sbjct: 7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQT 66
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
+F L E GH+PSL++YTTLLAA+T+QK++ SI SI+S+VE++G DSIFFNAVINAFS
Sbjct: 67 VFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFS 126
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK--P 211
ESGNME+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S +LLDLM EGNV P
Sbjct: 127 ESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGP 186
Query: 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271
N+RT+NVLV+AWC +K + EAW V+ KM G++PD VTYNTIAT Y Q GE +AE +
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEV 246
Query: 272 VE--MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329
VE + +PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFV
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389
E+MDRDG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAH
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
AYSILAKGYVR +EP+KAEELL T+I PNVVIFTT+ISGWCS+GSMD A+ VF+KM
Sbjct: 367 AYSILAKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKM 425
Query: 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
C+ GVSPN+KTFETLMWGY E +QPW+AEE+LQ+M+ GV P+ STFLLLAEA R GLT
Sbjct: 426 CKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT 485
Query: 510 KEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGS 569
E+ + ++ +K K DI + LE+LY K+++ +S+ NLLQIP V + +
Sbjct: 486 DESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPT 532
Query: 570 AAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLAN 629
A A M LS +CK GAR+PIICQKQ Q G+ Q +
Sbjct: 533 AKA------------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVH 567
Query: 630 SCTVVFLN 637
SCT VFL+
Sbjct: 568 SCT-VFLS 574
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana] gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/608 (57%), Positives = 434/608 (71%), Gaps = 51/608 (8%)
Query: 41 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
EKK++ S+P S P C C+ SCRTVRS TKLMN LIERG+P EAQ
Sbjct: 7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQT 66
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
+F L E GH+PSL++YTTLLAA+T+QK++ SI SI+S+VE++G DSIFFNAVINAFS
Sbjct: 67 VFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFS 126
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK--P 211
ESGNME+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S +LLDLM EGNV P
Sbjct: 127 ESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGP 186
Query: 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271
N+RT+NVLV+AWC +K + EAW V+ KM G++PD VTYNTIAT Y Q GE +AE +
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEV 246
Query: 272 VE--MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329
VE + +PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFV
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389
E+MDRDG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAH
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
AYSILAKGYVR + P+KAEELL T+I PNVVIFTT+ISGWCS+GSMD A+ VF+KM
Sbjct: 367 AYSILAKGYVRAKGPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKM 425
Query: 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
C+ GVSPN+KTFETLMWGY E +QPW+AEE+LQ+M+ GV P+ STFLLLAEA R GLT
Sbjct: 426 CKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT 485
Query: 510 KEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGS 569
E+ + ++ +K K DI + LE+LY K+++ +S+ NLLQIP V + +
Sbjct: 486 DESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPT 532
Query: 570 AAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLAN 629
A A M LS +CK GAR+PIICQKQ Q G+ Q +
Sbjct: 533 AKA------------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVH 567
Query: 630 SCTVVFLN 637
SCT VFL+
Sbjct: 568 SCT-VFLS 574
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 637 | ||||||
| TAIR|locus:1005716169 | 831 | AT5G21222 [Arabidopsis thalian | 0.772 | 0.592 | 0.535 | 7e-141 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.596 | 0.671 | 0.288 | 1.3e-52 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.709 | 0.755 | 0.272 | 4.6e-50 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.722 | 0.722 | 0.276 | 4.6e-50 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.618 | 0.527 | 0.285 | 8.5e-49 | |
| TAIR|locus:2039415 | 743 | AT2G16880 "AT2G16880" [Arabido | 0.678 | 0.581 | 0.270 | 2.3e-48 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.692 | 0.718 | 0.25 | 1.2e-47 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.729 | 0.508 | 0.254 | 1.6e-47 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.687 | 0.696 | 0.258 | 1.6e-47 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.733 | 0.741 | 0.254 | 5.4e-47 |
| TAIR|locus:1005716169 AT5G21222 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 266/497 (53%), Positives = 357/497 (71%)
Query: 35 KKNNPGEKKQLYSNSKPTDSQPQTH-CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
K+ N + + ++ +S+ Q ++ C C +C VRS TKLMN LIERG+PQEA +
Sbjct: 281 KEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHS 340
Query: 94 IFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
IFN LIE GHKPS QK F+S+ S++S+VE+NG+ PD+I FNA+INA S
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL 213
ESGN+++AM F KMKESG PT ST+NTLIKGYG GK EES +LLD+M R+ ++PN
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460
Query: 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV- 272
RT N+LV+AWCN++ I EAWN+++KM + G+KPDVVT+NT+A AYA+ G AE++I+
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520
Query: 273 EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332
M HN V+PN RTCG I++GYC+EGK++EALRF MKE GVHPNL +FN LIKGF+ I
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580
Query: 333 DRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392
D DGV EV+ LM+EF V PDV+T+ST+MNAWS+ G M +C+EI+ DM + GI PD HA+S
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640
Query: 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452
ILAKGY R EPEKAE++L M + G PNVVI+T IISGWCS G M +A++V+ KMC
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI 700
Query: 453 -GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTK- 510
G+SPNL T+ETL+WG+ EA+QPW+AEE+L+ M+ V P + T L+A+ ++ G++
Sbjct: 701 VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIGVSNS 760
Query: 511 -EAKRILSKIKNKERTN 526
+A + S + N
Sbjct: 761 NDANTLGSSFSTSSKLN 777
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 111/385 (28%), Positives = 213/385 (55%)
Query: 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS 178
I+K F+ ++ ++ E G P+ + + +I+ + G +E+A D F++M + GL
Sbjct: 179 IEKSFD----LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANER 234
Query: 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238
TY LI G G ++ ++ + M +G V PNL TYN ++ C + +A+ V +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 239 MAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298
M G+ ++VTYNT+ + + ++A +V+ +M+ +G+ PN T +I G+C GK
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST 358
+ +AL R +K G+ P+LV +N+L+ GF D G +++ M+E + P +TY+
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418
+++ ++ + M+K ++ M + G+ PD H YS+L G+ + + +A L +M+E
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478
PN VI+ T+I G+C +GS RA+++ +M E ++PN+ ++ ++ + R+ AE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533
Query: 479 EILQIMKAFGVHPQKSTFLLLAEAR 503
+++ M G+ P S L++ A+
Sbjct: 534 RLVEKMIDSGIDPSTSILSLISRAK 558
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 125/458 (27%), Positives = 224/458 (48%)
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVE 134
T L+ GK ++A I ++EG G P + I++ +S ++
Sbjct: 141 TTLIRGFCRLGKTRKAAKILE-ILEGSGAVPDVITYNVMISGYC---KAGEINNALSVLD 196
Query: 135 ENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE 194
+ PD + +N ++ + +SG +++AM+ +M + P TY LI+
Sbjct: 197 RMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVG 256
Query: 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254
++KLLD M R+ P++ TYNVLV C E + EA ++ M +SG +P+V+T+N I
Sbjct: 257 HAMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314
+ G AE+++ +M G P+ T I+I+ C++G + A+ M ++G
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375
Query: 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374
PN + +N L+ GF + D E L M PD++TY+T++ A G ++ E
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435
Query: 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434
I + + G P Y+ + G + + KA +LL M P+ + +++++ G
Sbjct: 436 ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLS 495
Query: 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494
+G +D AI+ F + G+ PN TF ++M G ++RQ RA + L M G P ++
Sbjct: 496 REGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNET 555
Query: 495 TFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEE 532
++ +L E G+ KEA +L+++ NK + AE+
Sbjct: 556 SYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQ 593
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 129/467 (27%), Positives = 233/467 (49%)
Query: 61 SFCMNKE----SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXX 116
SFC + S R + +L + L++ K +A +F ++I P+
Sbjct: 39 SFCCERGFSAFSDRNLSYRERLRSGLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSA 97
Query: 117 XXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT 176
K+++ + ++ Q+E G+ + + +IN F + A K+ + G P
Sbjct: 98 IAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPN 157
Query: 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236
T T++TLI G + G+ E+++L+D M G+ KP+L T N LV C EA ++
Sbjct: 158 TITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSGKEAEAMLLI 216
Query: 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE 296
KM G +P+ VTY + ++G+ A E++ +ME ++ + III G CK
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276
Query: 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITY 356
G + A M+ G+ N++ +N+LI GF D ++L M + ++NP+V+T+
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416
S +++++ G + + +E+ +M GI PD Y+ L G+ +E +KA +++ M+
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476
G PN+ F +I+G+C +D +E+F KM GV + T+ TL+ G+ E +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 477 AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI-KNK 522
A+E+ Q M + V P T+ +L + G +++A I KI K+K
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 113/396 (28%), Positives = 208/396 (52%)
Query: 128 SIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186
SI+ + +G P + +NAV++A S N+ A + F +M ES ++P TYN LI+G
Sbjct: 155 SIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRG 214
Query: 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246
+ AG + ++ L D M +G + PN+ TYN L+ +C + I + + ++ MA G++P
Sbjct: 215 FCFAGNIDVALTLFDKMETKGCL-PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP 273
Query: 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306
++++YN + + G + V+ EM G + T +I GYCKEG +AL
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366
M +G+ P+++ + LI + + + E L M+ + P+ TY+T+++ +S
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Query: 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426
G+M++ + +M G P Y+ L G+ + E A +L M E G P+VV +
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486
+T++SG+C +D A+ V +M E G+ P+ T+ +L+ G+ E R+ A ++ + M
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 487 FGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522
G+ P + T+ L A G ++A ++ +++ K
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
|
|
| TAIR|locus:2039415 AT2G16880 "AT2G16880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 118/436 (27%), Positives = 226/436 (51%)
Query: 91 AQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQ-VEENGMDPDSIFFNAVI 149
A+ +F+++++ G + ++ + ++ + V E ++PD++ +N ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV 209
A S+ G + + + MK++GL P TYN L+ GY G +E+ ++++LM ++ NV
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM-KQTNV 306
Query: 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269
P+L TYN+L+ CN ++ E +M M + ++PDVVTYNT+ + G + +A +
Sbjct: 307 LPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARK 366
Query: 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGF 328
++ +ME++GV+ N T I + CKE K + R + + + +G P++V ++ LIK +
Sbjct: 367 LMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAY 426
Query: 329 VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388
+++ D G E++ M + + + IT +TI++A +D+ + + K G D
Sbjct: 427 LKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE 486
Query: 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDK 448
Y L G+ RE++ EKA E+ M + P V F ++I G C G + A+E FD+
Sbjct: 487 VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDE 546
Query: 449 MCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508
+ E G+ P+ TF +++ GY + + +A E P T +L G+
Sbjct: 547 LAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGM 606
Query: 509 TKEAKRILSK-IKNKE 523
T++A + I+ +E
Sbjct: 607 TEKALNFFNTLIEERE 622
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 111/444 (25%), Positives = 219/444 (49%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENG 137
++N L R + A AI +++ G+ PS R + +++ Q+ E G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
PD++ F +++ + EA+ +M G P TY +I G G+P+ ++
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATA 257
LL+ M + G ++ ++ Y+ ++ + C +++ +A N+ +M G++PDV TY+++ +
Sbjct: 226 NLLNKMEK-GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317
G A ++ +M + PN T +I + KEGK+ EA + M + + PN
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 318 LVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
+V +N LI GF + DR D ++ LM PDV+TY+T++N + A + E+F
Sbjct: 345 IVTYNSLINGFC-MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
DM + G+ + Y+ L G+ + + + A+ + M+ G HPN++ + T++ G C +
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G +++A+ VF+ + + + P++ T+ + G +A + ++ + GV P +
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 497 LLLAEARRATGLTKEAKRILSKIK 520
+ GL +EA + K+K
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMK 547
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 119/468 (25%), Positives = 225/468 (48%)
Query: 53 DSQPQTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXX 112
D Q + +K C + + K++N + G +EA + ++E G P
Sbjct: 200 DEMKQVYMEMLEDKV-CPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258
Query: 113 XXXXXXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESG 172
+K +S + +++ G + + + +I+ + ++EAMD F KMK+
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE 318
Query: 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232
PT TY LIK + + E++ L+ M G +KPN+ TY VL+ + C++ +A
Sbjct: 319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG-IKPNIHTYTVLIDSLCSQCKFEKA 377
Query: 233 WNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISG 292
++ +M G+ P+V+TYN + Y + G + A +V+ ME + PN RT +I G
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437
Query: 293 YCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD 352
YCK + +A+ M E V P++V +N LI G + D +L+LM + + PD
Sbjct: 438 YCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412
TY++++++ + +++ ++FD + + G+ P+ Y+ L GY + + ++A +L
Sbjct: 497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556
Query: 413 TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472
M+ PN + F +I G C+DG + A + +KM + G+ P + T L+ +
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDG 616
Query: 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
A Q M + G P T+ + G +A+ +++K++
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 114/441 (25%), Positives = 220/441 (49%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENG 137
L++ L K EA A+ + ++ G +P + + S++ ++E+
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
++ D + + +I+A N+ +A++ F +M G+ P TYN+LI+ G+ ++
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 198 KLL-DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256
+LL D++ R+ + PN+ T++ L+ A+ E + EA + +M + PD+ TY+++
Sbjct: 311 RLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 257 AYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP 316
+ + D+A+ + M PN T +I G+CK +++E + R M + G+
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
N V +N LI+G + D D ++ M V PD+ITYS +++ G ++K +F
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
+ + K+ ++PD + Y+I+ +G + + E +L ++ G PNV+I+TT+ISG+C
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G + A +F +M E G PN T+ TL+ + E+++ M++ G ST
Sbjct: 549 GLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608
Query: 497 LLLAEARRATGLTKEAKRILS 517
++ L K +LS
Sbjct: 609 SMVINMLHDGRLEKSYLEMLS 629
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 120/472 (25%), Positives = 223/472 (47%)
Query: 43 KQLYSNSKPTDSQPQ-THCSFCMNKESCRTVR-SMTKLMNSLIERGKPQEAQAIFNNLIE 100
+ L K + P +HCSF + S VR K+ + + K +A +F ++++
Sbjct: 17 RSLLGKGKCGTAPPSFSHCSFWVRDFS--GVRYDYRKISINRLNDLKLDDAVNLFGDMVK 74
Query: 101 GGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160
PS +F+ + S+ Q++ G+ + ++ +IN F +
Sbjct: 75 SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSL 134
Query: 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220
A+ KM + G P T N+L+ G+ + ++V L+ M G +P+ T+N L+
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG-YQPDSFTFNTLI 193
Query: 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280
+EA ++ +M G +PD+VTY + + G+ D A ++ +ME ++
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340
P II C + +AL M G+ PN+V +N LI+ +
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
L+ M E ++NP+V+T+S +++A+ G + + ++++D+M K I PD YS L G+
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373
Query: 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460
++A+ + MI PNVV + T+I G+C +D +E+F +M + G+ N T
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433
Query: 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEA 512
+ TL+ G+ +AR+ A+ + + M + GV P T+ +L + G + A
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GZ63 | PP397_ARATH | No assigned EC number | 0.5773 | 0.8744 | 0.9703 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVIII.1338.1 | hypothetical protein (552 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 637 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-31
Identities = 103/487 (21%), Positives = 193/487 (39%), Gaps = 86/487 (17%)
Query: 95 FNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154
E + + + L +K +S + +S ++N D+ +
Sbjct: 292 LYTFYEEKQSRAKSSRLPNVKGL--RKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAAS 349
Query: 155 SGNMEEAMDTFWKMKESGLTPTTST------YNTLIKGYGIAGKPEESVKLLDLMSR--- 205
E ++ + G++ + YN L++ G+ ++ + LL+ M +
Sbjct: 350 DVEEENSLAAY----NGGVSGKRKSPEYIDAYNRLLR----DGRIKDCIDLLEDMEKRGL 401
Query: 206 -----------------EGNVK-----------PNLRTYNVLVRAWCNEKNITEAWNVMH 237
+ VK P L T+N+L+ + ++I A V+
Sbjct: 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461
Query: 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297
+ +G+K D Y T+ + A++G+ D EV EM + GV+ N T G +I G + G
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMK--EFRVNPDVIT 355
++ +A M+ V P+ V+FN LI + D +VLA MK ++PD IT
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIK------------------------------ 385
+M A + AG +D+ KE++ + + IK
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 386 -----PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440
PD +S L + +KA E+L + G V +++++ + +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF--LL 498
+A+E+++ + + P + T L+ E Q +A E+L MK G+ P T+ LL
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 499 LAEARRA 505
+A R+
Sbjct: 762 VASERKD 768
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-31
Identities = 84/356 (23%), Positives = 162/356 (45%), Gaps = 3/356 (0%)
Query: 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164
P+L T+ L++ + + ++ V+E G+ D + +I+ ++SG ++ +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224
F +M +G+ T+ LI G AG+ ++ +M R NVKP+ +N L+ A
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACG 553
Query: 225 NEKNITEAWNVMHKMAASG--MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN 282
+ A++V+ +M A + PD +T + A A G+ D+A+EV + ++
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 283 GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342
I ++ ++G AL MK+ GV P+ V F+ L+ D D E+L
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ 402
++ + ++YS++M A S A K E+++D+ ++P + L
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 403 EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL 458
+ KA E+L M G PN + ++ ++ D +++ + E G+ PNL
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
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Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-19
Identities = 91/383 (23%), Positives = 162/383 (42%), Gaps = 21/383 (5%)
Query: 81 SLIER----GKPQEAQAIFNNL-IEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
S IE+ G+ +EA +F L TY L+ A K + ++ VE
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
+G +PD N V+ + G + +A F +M E L ++ T+I G AG E
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYRE 207
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
+ L M +G+ RT+ V++RA + + + +G+ D +
Sbjct: 208 AFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 256 TAYAQNGEADQAEEVIVEM-EHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314
Y++ G+ + A V M E V N +++GY G +EAL M++ GV
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNS-----MLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374
+ F+++I+ F + + + A + D++ + +++ +S G M+ +
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434
+FD M + + +++ L GY KA E+ MI G PN V F ++S
Sbjct: 382 VFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 435 SDGSMDRAIEVFDKMCE-HGVSP 456
G ++ E+F M E H + P
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 4e-18
Identities = 80/377 (21%), Positives = 155/377 (41%), Gaps = 47/377 (12%)
Query: 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG 243
I+ G+ E+++L +++ TY+ LV A K+I V + +SG
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303
+PD N + + + G A + EM + N + G II G G +EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF 209
Query: 304 RFARTMKEYGVHPNLVIFNLLIK-------------------------------GFVEIM 332
R M E G F ++++ +++
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 333 DRDG-VDE---VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388
+ G +++ V M E + +++++ ++ G+ ++ ++ +M +G+ D
Sbjct: 270 SKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDK 448
+SI+ + + R E A++ +I +GF ++V T ++ + G M+ A VFD+
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 449 MCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508
M NL ++ L+ GY + +A E+ + M A GV P TFL + A R +GL
Sbjct: 386 MPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 509 TKEAKRILSKIKNKERT 525
+++ I + R
Sbjct: 442 SEQGWEIFQSMSENHRI 458
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Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-18
Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Query: 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163
P +T L+ A + + + + E + + +N+ S+ G+ + A+
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223
+ MK+ G+ P ++ L+ G AG +++ ++L ++G +K +Y+ L+ A
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGAC 694
Query: 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG 283
N KN +A + + + ++P V T N + TA + + +A EV+ EM+ G+ PN
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI 325
T I++ ++ L KE G+ PNLV+ +
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
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Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-17
Identities = 86/406 (21%), Positives = 162/406 (39%), Gaps = 68/406 (16%)
Query: 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL 200
D I +NA+I+ + E+G E ++ F+ M+E + P T ++I + G ++
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 201 DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260
+ + G ++ N L++ + + + EA V +M D V++ + + Y +
Sbjct: 312 GYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEK 366
Query: 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVI 320
NG D+A E ME + V P+ T ++S G + ++ + G+ +V+
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 321 FNLLIKGFVEIMDRDGVDEVLALMKE------------FRVN------------------ 350
N LI+ + + D EV + E R+N
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486
Query: 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-------------------------- 384
P+ +T ++A + G + KEI + + GI
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 385 ----KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440
+ D +++IL GYV + A EL M+ESG +P+ V F +++ CS M
Sbjct: 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRSGMV 605
Query: 441 R-AIEVFDKM-CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484
+E F M ++ ++PNLK + ++ A + A + M
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 47/334 (14%)
Query: 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSI 129
R + S ++ L++ G +EA A+F + E G T+ +L A + +
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246
Query: 130 MSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189
V + G+ D+ A+I+ +S+ G++E+A F M E TT +N+++ GY +
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYAL 302
Query: 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249
G EE++ L M R+ V + T+++++R + + A + +G D+V
Sbjct: 303 HGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 250 TYNTIATAYAQNGEADQAEEVIVEMEH-NGVQPNGRTCGIIISGYCKEGKIKEALRFART 308
+ Y++ G + A V M N + N +I+GY G+ +A+
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA-----LIAGYGNHGRGTKAVEMFER 416
Query: 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGF 368
M GV PN V F LA +++A +G
Sbjct: 417 MIAEGVAPNHVTF-------------------LA----------------VLSACRYSGL 441
Query: 369 MDKCKEIFDDMGKA-GIKPDAHAYSILAKGYVRE 401
++ EIF M + IKP A Y+ + + RE
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 74/345 (21%), Positives = 143/345 (41%), Gaps = 40/345 (11%)
Query: 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK---------------GYG 188
N+ + A G +E+A+ M+E + Y L +
Sbjct: 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112
Query: 189 IAGKPEESVKL----LDLMSREGNV-----------KPNLRTYNVLVRAWCNEKNITEAW 233
++ P V+L L + R G + + +L ++NVLV + EA
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGY 293
+ H+M +G++PDV T+ + + + EV + G + + +I+ Y
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 294 CKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEI-MDRDGVDEVLALMKEFRVNPD 352
K G + A M + + +N +I G+ E +G+ E+ M+E V+PD
Sbjct: 233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGL-ELFFTMRELSVDPD 287
Query: 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412
++T +++++A G +E+ + K G D + L + Y+ +AE++
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 413 TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457
M + V +T +ISG+ +G D+A+E + M + VSP+
Sbjct: 348 RMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 7e-14
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 246 PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295
PDVVTYNT+ Y + G+ ++A ++ EM+ G++PN T I+I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
PDV+TY+T+++ + G +++ ++F++M K GIKP+ + YSIL G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468
P+VV + T+I G+C G ++ A+++F++M + G+ PN+ T+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187
PD + +N +I+ + + G +EEA+ F +MK+ G+ P TY+ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 41/179 (22%), Positives = 90/179 (50%), Gaps = 1/179 (0%)
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
T +NS ++G A +I++++ + G KP V ++ L+ + I+ +
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
G+ ++ +++++ A S + N ++A++ + +K L PT ST N LI + +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254
++++L M R G + PN TY++L+ A + + +++ + G+KP++V I
Sbjct: 738 ALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 7e-12
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 175 PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225
P TYNTLI GY GK EE++KL + M + G +KPN+ TY++L+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 5e-11
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260
P++ TYN L+ +C + + EA + ++M G+KP+V TY+ + +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 1e-10
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
G P+VV + T+I G C G +D A+E+ D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
N + D + +N ++ + G A++ F +M ESG+ P T+ +L+ +G +
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
++ M + ++ PNL+ Y +V +TEA+N ++KM + PD + +
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL 664
Query: 256 TA-----YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310
A + + GE A + I E++ N V C + Y GK E R +TM+
Sbjct: 665 NACRIHRHVELGEL--AAQHIFELDPNSVGYYILLCNL----YADAGKWDEVARVRKTMR 718
Query: 311 EYGV------------------------HPNLVIFNLLIKGFVEIMDRDG 336
E G+ HP + N +++GF E M G
Sbjct: 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGF 328
P+ T +I GYCK+GK++EAL+ MK+ G+ PN+ +++LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 65/331 (19%), Positives = 132/331 (39%), Gaps = 52/331 (15%)
Query: 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHS 128
+ S T +++ + G P +A + + + P +T ++L+A +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188
+ E G+ + NA+I +S+ +++A++ F + E + TS +I G
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS----IIAGLR 466
Query: 189 IAGKPEESVKLLDLMSREGNVKPN---------------------------LRT------ 215
+ + E++ M +KPN LRT
Sbjct: 467 LNNRCFEALIFFRQM--LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 216 --YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273
N L+ + + AWN + + DVV++N + T Y +G+ A E+
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 274 MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGFVEIM 332
M +GV P+ T ++ + G + + L + +M+E Y + PNL + + V+++
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV----VDLL 635
Query: 333 DRDG-VDEVLALMKEFRVNPDVITYSTIMNA 362
R G + E + + + PD + ++NA
Sbjct: 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 65/311 (20%), Positives = 131/311 (42%), Gaps = 38/311 (12%)
Query: 136 NGMD-PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE 194
+ M+ D++ + A+I+ + ++G ++A++T+ M++ ++P T +++ G +
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254
VKL +L R+G + + N L+ + K I +A V H + + DV+++ +I
Sbjct: 407 VGVKLHELAERKGLISYVVVA-NALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSI 461
Query: 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRT--------------------------CGI 288
N +A +M ++PN T GI
Sbjct: 462 IAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520
Query: 289 IISGYCKEGKIKEALRFART---MKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALM 344
G+ + +R R ++ H ++V +N+L+ G+V E+ M
Sbjct: 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 345 KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM-GKAGIKPDAHAYSILAKGYVREQE 403
E VNPD +T+ +++ A S +G + + E F M K I P+ Y+ + R +
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 404 PEKAEELLMTM 414
+A + M
Sbjct: 641 LTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434
PD Y+ L GY ++ + E+A +L M + G PNV ++ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362
P++V +N LI G+ + + ++ MK+ + P+V TYS +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 5e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 242 SGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275
G+KPDVVTYNT+ + G D+A E++ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 9e-07
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 277 NGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310
G++P+ T +I G C+ G++ EA+ M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL 117
V + L++ ++GK +EA +FN + + G KP++ TY+ L+ L
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457
V + T+I G C G ++ A+E+F +M E G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 171 SGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204
GL P TYNTLI G AG+ +E+V+LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248
TYN L+ C + EA + +M G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 178 STYNTLIKGYGIAGKPEESVKLLDLMSREG 207
TYN+LI GY AGK EE+++L M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317
T +I G CK G+++EAL + MKE G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454
V + ++ISG+C G ++ A+E+F +M E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN 212
TYNTLI G AG+ EE+++L M G ++P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERG-IEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388
+TY+T+++ AG +++ E+F +M + GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 145 FNAVINAFSESGNMEEAMDTFWKMKESGL 173
+N++I+ + ++G +EEA++ F +MKE G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281
+ TYN + A A+ G+ D A V+ EM+ +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 208 NVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239
+KP++ TYN L+ C + EA ++ +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN 282
VTYNT+ + G ++A E+ EM+ G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV 423
Y+ L G + E+A EL M E G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 458 LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491
L+T+ L+ ++A P A +L+ MKA G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279
VTYN++ + Y + G+ ++A E+ EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTP 175
+NA++ A +++G+ + A+ +MK SGL P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456
+ + ++ G D A+ V ++M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTT 177
+N +I+ ++G +EEA++ F +MKE G+ P
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 285 TCGIIISGYCKEGKIKEALRFARTMKEYGV 314
T +ISGYCK GK++EAL + MKE GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384
+TY+++++ + AG +++ E+F +M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386
+ TY+ ++ A + AG D + ++M +G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246
L TYN L+ A + A V+ +M ASG+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 637 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.99 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.67 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.24 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.97 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.96 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.75 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.46 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.42 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.41 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.32 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.29 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.17 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.09 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.98 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.91 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.48 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.23 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.1 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.96 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.88 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.87 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.6 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.54 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.37 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.25 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.07 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.94 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.89 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.76 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.51 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.94 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.85 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.23 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.01 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.75 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.45 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.29 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.83 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.08 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.87 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.73 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 90.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.62 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.4 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.47 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.91 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.85 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.27 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.25 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.85 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.69 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.33 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.74 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.14 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.48 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.33 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.57 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.53 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 81.16 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.66 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.01 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=692.18 Aligned_cols=526 Identities=17% Similarity=0.239 Sum_probs=502.8
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
+..+++.++|.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|..+|.+|.+.|+.||..+|+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 345788899999999999999999999999995 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|++++.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996 37899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+
T Consensus 448 ~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9997 57889999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
|..++++|+++|+++|++++|.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----------cccccccch
Q 006640 467 GYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN----------EMEAEEDIP 535 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~----------~~~~~~~~a 535 (637)
+|++.|++++|.++|++|. ++|+.|+..||.+++++|+++|++++|.+++++|+.. |+. ..+++.++|
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999998 7999999999999999999999999999999999633 221 347899999
Q ss_pred HHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceeccc
Q 006640 536 VESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615 (637)
Q Consensus 536 ~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~h~~~~~~~~~~~~~~~~ 615 (637)
+.+++++++++|++.++ |++|+|+|+..|+|++|.++|+.|+++|++|.|||||||++|++|. |+.+|
T Consensus 677 e~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~----------f~~~d 744 (857)
T PLN03077 677 ELAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA----------FLTDD 744 (857)
T ss_pred HHHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE----------EecCC
Confidence 99999999999998774 7899999999999999999999999999999999999999999999 67788
Q ss_pred cCCcccccc
Q 006640 616 QPLGQVGMY 624 (637)
Q Consensus 616 ~~~~~~~~~ 624 (637)
++||+++..
T Consensus 745 ~~h~~~~~i 753 (857)
T PLN03077 745 ESHPQIKEI 753 (857)
T ss_pred CCCcchHHH
Confidence 999998643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=614.32 Aligned_cols=503 Identities=20% Similarity=0.302 Sum_probs=422.9
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455688888888888888888888888887654 5788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.| +.|+..+|+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCc
Confidence 8888888888888888888864 688888888888888888888888888888776 67888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||.|+.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888753 5778888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 888888888888888888888888888888888888888888888888888888888888888888888875 3677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-HGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~ 467 (637)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888875 5888888888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhc
Q 006640 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~ 547 (637)
|++.|++++|.+++++| ++.|+..+|..++.+|...|+++.|..+++++ ++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l-----------------------~~~~p 525 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL-----------------------YGMGP 525 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------------------hCCCC
Confidence 88888888888887654 57788888888888888888777777666554 44567
Q ss_pred cCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceeccccCCccccc
Q 006640 548 TTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGM 623 (637)
Q Consensus 548 ~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 623 (637)
++.. .|+.|+++|++.|+|++|.++++.|+++|++|.|||||||+++++|. |+.++++||+.+.
T Consensus 526 ~~~~--~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~----------f~~~d~~h~~~~~ 589 (697)
T PLN03081 526 EKLN--NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS----------FFSGDRLHPQSRE 589 (697)
T ss_pred CCCc--chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE----------EccCCCCCccHHH
Confidence 6543 35889999999999999999999999999999999999999999999 6677799998753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=551.93 Aligned_cols=509 Identities=20% Similarity=0.297 Sum_probs=455.3
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..++...|..+++.+++.|++++|+++|++|...|+ .++..+++.++.+|.+.|..++|..+++.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 446788899999999999999999999999999886 46788888999999999999999999998863 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.| +.||..+|+.||.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999887 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH--NGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 6789999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
+|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.||..+|++|+.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHhh
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRA----T-------------------GLTKEAKRILSKIKN 521 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~eA~~~~~~~~~ 521 (637)
+.+|++.|++++|.++|++|.+.|+.||..+|+++++.|.+ + +..++|..+|++|..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877542 1 235799999999986
Q ss_pred ccc--cc----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCC-chhhhhhhhccccccCc
Q 006640 522 KER--TN----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKG-SAAALKKGRMLLRDADS 585 (637)
Q Consensus 522 ~~~--~~----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~-~~a~~~r~~~~~~~~~k 585 (637)
... +. ...+..+.+..+.+.+. ..|....|.+|..|-+.+ |++ ++|..+.+.|..+|+.-
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 632 11 01122233323333221 234333333344444433 444 48999999999999854
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=536.37 Aligned_cols=446 Identities=20% Similarity=0.327 Sum_probs=361.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
++...++.++..|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4566667777778888888888888877753 788888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+ +.||..+|+.|+.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888888888888888888888888888888888888887766 778888888888888888888
Q ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 230 TEAWNVMHKMAA--SGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 230 ~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
++|.++|++|.. .|+.||..+|++|+.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888888888865 567788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887778888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|++++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887765
Q ss_pred HHh----c-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 468 YSE----A-------------------RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 468 ~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|.+ . +..++|..+|++|.+.|+.||..+|..++..++..+..+.+..+++.|.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 432 1 2246788888888888888888888888877777777777777777764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-62 Score=541.64 Aligned_cols=440 Identities=20% Similarity=0.285 Sum_probs=338.0
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
..+++++||.++.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.+++..+.+.|+.||..+++.
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 34677888888888888888888888888888878888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
|+.+|+++|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcC
Confidence 88888888888888888888764 577788888888888888888888888887776 7788888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 228 NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888775 3677788888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+|.+.|+.||..+|+.++.+|++.|+.+.+.++++.+.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 88888888888888888888888888888888888888888778888888888888888888888888877753 46
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV------------- 454 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------- 454 (637)
..+|++++.+|++.|+.++|..+|++|.. +++||..||++++.+|++.|+.+.+.+++..+.+.|+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 66777777777777777777777777765 3567777666666555544444444444444443333
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 455 -----------------SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 455 -----------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
.||..+|++++.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|+
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 356666777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhh
Q 006640 518 KIKN 521 (637)
Q Consensus 518 ~~~~ 521 (637)
.|..
T Consensus 614 ~M~~ 617 (857)
T PLN03077 614 SMEE 617 (857)
T ss_pred HHHH
Confidence 7753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=508.70 Aligned_cols=440 Identities=18% Similarity=0.269 Sum_probs=416.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG-MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
.++..+|+.+|.++.+.|++++|.++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006640 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
|+.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999963 7999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 6799999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
.|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 589
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQKSTFLLLAE 501 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~ 501 (637)
..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974 799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcccc
Q 006640 502 ARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLR 581 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~ 581 (637)
+|+++|++++|.+++++|+. .|+...| ..|.+.+...|+.+.|.++-+.+.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~------------------------~p~~~~~---~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPF------------------------KPTVNMW---AALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCC------------------------CCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999999999988742 2443333 55677889999999999888777654
Q ss_pred cc
Q 006640 582 DA 583 (637)
Q Consensus 582 ~~ 583 (637)
+.
T Consensus 524 ~p 525 (697)
T PLN03081 524 GP 525 (697)
T ss_pred CC
Confidence 44
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=297.69 Aligned_cols=496 Identities=12% Similarity=0.047 Sum_probs=361.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +........++..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 440 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHH
Confidence 4445555555555555555555555555432 2244445555555555555555555555555443 2233344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.|++++|..+++.+.... +++..++..+...|...|++++|.+.|+++.+.. +.+...+..++..+...|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666665543 2356677777777777777777777777776653 4456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..|.+.|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 877777777654 34566777777778888888888888887766543 4556677788888888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 54 5567788888888888888888888888887754 3466777788888888888888888888887753 4467788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..++..+...|++++|..+++.+.+.. +++...+..++..+...|++++|+..|+++...+ |+..++..++.++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 888888888888888888888888775 6677788888888899999999999999988754 5557777888889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccc-----------ccccccchHHHHH
Q 006640 472 RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNE-----------MEAEEDIPVESLE 540 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~e 540 (637)
|++++|.+.++++.+.. ..+...+..++.++...|++++|...++++....|.+. ..++ +.|...++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 99999999998887633 23566788888999999999999999999987766431 2344 56888999
Q ss_pred HHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccC
Q 006640 541 RLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDAD 584 (637)
Q Consensus 541 ~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~ 584 (637)
+++++.|++.. .+..++.+|...|++++|....+.+.+.+..
T Consensus 828 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 828 KALKLAPNIPA--ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHhhCCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99998888766 3567899999999999999999888877764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=295.49 Aligned_cols=494 Identities=13% Similarity=0.092 Sum_probs=430.0
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+...+..+...+...|++++|+..|+.+..... .+......++..+.+.|++++|..+++.+.... +.+..++..+
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 471 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLL 471 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence 34667788889999999999999999999987542 244566677888999999999999999998764 6788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...|...|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999887543 67788889999999999999999999998864 5678899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..+|.+.|++++|+..|++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998765 4567788889999999999999999999998754 35678899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 98765 5577889999999999999999999999998865 3468889999999999999999999999998875 5578
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+.+.|++++|...|+++.+. .|+..++..++.++...|++++|.+.++++.+... .+...+..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 88899999999999999999999999986 45557888899999999999999999999998643 4778899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHH
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVE 537 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~ 537 (637)
...|+.++|...|+++.+... ++...+..++.++...|+ .+|+.+++++....+.+ ...++.+.|..
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987432 356688899999999999 88999999998776543 13577888999
Q ss_pred HHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcc
Q 006640 538 SLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRML 579 (637)
Q Consensus 538 ~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~ 579 (637)
.+++++++.|.+.. .+..++.+|...|++++|..+-+.|.
T Consensus 859 ~~~~a~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAA--IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999887654 46789999999999999998887764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-22 Score=233.40 Aligned_cols=498 Identities=11% Similarity=0.053 Sum_probs=285.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTY----------------TTLLAALTIQKRFNSIHSIMSQ 132 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~ 132 (637)
+.++..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+.+.+...|++++|...|++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456677778888888999999999999888753 2233322 2234467788899999999988
Q ss_pred HHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--
Q 006640 133 VEENGMDPDSIFF-NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-- 209 (637)
Q Consensus 133 ~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 209 (637)
+.+.+ +++...- ..+.......|+.++|+..++++.+..+. +...+..+...+...|+.++|++.++++......
T Consensus 138 ~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88654 4443221 11122223458888899999888887543 6677888888888888888888888887543200
Q ss_pred -------------CCC---HHHH----------------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 006640 210 -------------KPN---LRTY----------------------------------NVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 210 -------------~~~---~~~~----------------------------------~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
+++ ...+ ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 0000 01134456678888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhH------------HHHHHHHHHcCCHHHHHHHH
Q 006640 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTC------------GIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 240 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~ 306 (637)
++.. +.+...+..+..++.+.|++++|+..|++..+...... ...| ......+.+.|++++|+..|
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8763 33677788888888888888888888888876543211 1111 12244567788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------------
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA------------------------ 362 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------------------------ 362 (637)
+++.+.. +.+...+..+...+...|++++|++.|+++.+..+ .+...+..+...
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 8887764 44566777788888888888888888888776542 233333333333
Q ss_pred ------------------HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 363 ------------------WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424 (637)
Q Consensus 363 ------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 424 (637)
+...|++++|++.+++.++.. +.+...+..+...|.+.|++++|...++++.+.. +.+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 334455555555555555442 2234444555555555555555555555555432 22333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL---------KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 495 (637)
.+..+...+...|+.++|+..++++......++. ..+..+...+...|+.++|..+++. ..++...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 3333333333344444444443332111000000 0011122233334444444443331 1122334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccc
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSS 564 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~ 564 (637)
+..+.+++.+.|++++|+..++++....|++ ...++.+.|...++++++..|++.. ....++.+|..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~--~~~~la~~~~~ 683 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN--TQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH--HHHHHHHHHHh
Confidence 4455555666666666666666665554442 1234455555555555555554433 23445555666
Q ss_pred cCCCchhhhhhhhcccc
Q 006640 565 DQKGSAAALKKGRMLLR 581 (637)
Q Consensus 565 ~g~~~~a~~~r~~~~~~ 581 (637)
.|++++|....+.....
T Consensus 684 ~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 66666666555554433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-22 Score=230.50 Aligned_cols=489 Identities=12% Similarity=0.059 Sum_probs=354.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
..+...+.+.|++++|++.|+.+...+ +|+.. ............|+.++|+..++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 445567888899999999999988743 33432 11112222234588899999999988875 6677788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCC------------------C--------------CCHHHH---------------------H
Q 006640 155 SGNMEEAMDTFWKMKESGL------------------T--------------PTTSTY---------------------N 181 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~---------------------~ 181 (637)
.|+.++|+..++++.+... . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8999999998888754321 0 000000 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH---------
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTY--------- 251 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~--------- 251 (637)
.....+...|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11344567789999999999988864 5578888999999999999999999999988754221 11112
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-----
Q 006640 252 ---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL----- 323 (637)
Q Consensus 252 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 323 (637)
..+...+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1224566788999999999999887643 456677788889999999999999999988653 223333322
Q ss_pred -------------------------------------HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006640 324 -------------------------------------LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 324 -------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 366 (637)
+...+...|++++|.+.+++..+..+ .+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 22334567899999999999988753 3667788899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcC
Q 006640 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---------IFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g 437 (637)
|++++|+..++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999998754 3456666666666788999999999998875432222221 1234566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.++|+.+++. .+++...+..+...+...|+.++|+..|++..+ ..|+ ...+..++.++...|++++|+..+
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999998872 234566777888899999999999999999887 3454 567888999999999999999999
Q ss_pred HHHhhccccc-----------cccccccchHHHHHHHHhhhccCCC----CCCcccccccccccCCCchhhhhhhhcc
Q 006640 517 SKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTAS----YPNLLQIPNVVSSDQKGSAAALKKGRML 579 (637)
Q Consensus 517 ~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~----y~~~~~L~~~y~~~g~~~~a~~~r~~~~ 579 (637)
++++...|++ ...++.+.|...++++++..|++.. ...+..++.+|...|++++|....+...
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9887765542 1356778888889999886554322 0123346889999999999998866553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=196.49 Aligned_cols=433 Identities=15% Similarity=0.114 Sum_probs=330.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
...|.....+.|++.+|.+.-...-..+ +.+......+-..+.+..+++....--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4567788889999999998766554432 2233333333344555555555444333333332 4557788888888989
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 233 (637)
.|++++|+.+++.+.+..+. ....|..+..++...|+.+.|.+.|.+..+.+ |+... .+.+....-..|++.+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhH
Confidence 99999999999999887644 67788888999999999999999888888753 55444 344555556688889998
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 234 NVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 234 ~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
..+.+.++. .|. .+.|+.|...+-..|+...|+..|++.++. +|+ ...|..|...|...+.+++|+..|.+...
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 888888765 333 467888888888889999999999888775 344 56788888888888999999988888876
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
.. +...+.+..+...|-..|..+.|+..+++.++..+ .-...|+.|..++-..|++.+|.+.+.+.+... +....+.
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 53 33456777788888888999999999988887652 246788889999888999999999998888763 3356778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSE 470 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~ 470 (637)
+.|...|...|.+++|..+|....+.. +.=....+.|...|-++|++++|+..|++.++ +.|+.. .|+.+...|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 888899999999999999998888752 33346788888889999999999999998887 667754 78888888989
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 471 ARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|+++.|++.+.+... +.|. .+..+.+..++..+|++.+|+.-++.+....|+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999998888776 6677 457888888999999999998888888766654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=192.61 Aligned_cols=444 Identities=10% Similarity=0.065 Sum_probs=359.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
...|..-..+.|++.+|.+.-...-..+ +.+....-.+-..+....+.+.....-....+... .-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHH
Confidence 4455666678899999987654444332 33334444444566666777766554444444332 257799999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 268 (637)
.|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+.++. .|+..... .+....-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999864 456889999999999999999999999999875 56655443 4555666789999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..|.+.++... --...|+.|...+...|+...|++.|++..+.. +.=...|-.+...|...+.++.|...+.......
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99998887632 235789999999999999999999999998764 2235689999999999999999999999887765
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
+ .....+..+...|-..|.++.|+..+++.++.. +.-...|+.|..++-..|+..+|...+++..... +....+.+.
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2 356778888888999999999999999999864 3347899999999999999999999999999873 455678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRAT 506 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 506 (637)
|...|...|.+++|..+|+...+ +.|.- ..++.|...|-+.|++++|+..+++... +.|+. ..|+.+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999998 44654 4799999999999999999999999887 89995 4899999999999
Q ss_pred CCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006640 507 GLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 507 g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
|+.++|...+.++...+|.- ..-++...|...++.++.+.||... ++.+|.-...-...|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHHHHHhcccc
Confidence 99999999999998765531 2347889999999999999998765 45777766666677776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-19 Score=189.56 Aligned_cols=432 Identities=12% Similarity=0.020 Sum_probs=298.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
..+..+.+.+.+.|++++|+..|++.+. ..|+...|..+..+|...|++++|+..+.+.++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3456778889999999999999999987 46788889999999999999999999999999875 56778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
...|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +++...+..+...+ ........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGNYL-QSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHHHH-HHccCCcc
Confidence 99999999999888776553222222 2222222111 12222222332221 22222333332222 11111111
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 233 WNVMHKMAASGMKPDV-VTYNTIATA---YAQNGEADQAEEVIVEMEHNG-V-QPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 233 ~~~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
..-+....+. .+.. ..+..+... ....+++++|.+.|++..+.+ . +.....++.+...+...|++++|+..|
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111111 1110 111111111 123467889999998888754 1 234566778888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++.++.. +.....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|+..|++.++.. +.
T Consensus 355 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 9888763 3346678888888888899999999998887765 3467788888888899999999999999988764 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-H
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-----K-T 460 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~ 460 (637)
+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|+..|++..+.....+. . .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 57777888888889999999999999888763 566788888889999999999999999998875322111 1 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+...+..+...|++++|..++++..+ +.|+.. .+..++.++.+.|++++|..++++.....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 12222233446899999999988776 345544 67788899999999999999998886653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-19 Score=195.46 Aligned_cols=223 Identities=12% Similarity=0.005 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45556666666555 6777888877777665 355444444455556889999999999887654 455566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 511 (637)
.+...|+.++|...|++..+... ++...+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888999999999988887542 2333344444455566899999999888876 56777788888888999999999
Q ss_pred HHHHHHHHhhcccccc-----------ccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccc
Q 006640 512 AKRILSKIKNKERTNE-----------MEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 512 A~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
|+..++++....|++. ..++.+.|...+++++++.|++.. .+.+|+.+|...|++++|....++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~--a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA--LIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999888877641 246678888888888888888765 467888999999999988877766655
Q ss_pred cccC
Q 006640 581 RDAD 584 (637)
Q Consensus 581 ~~~~ 584 (637)
....
T Consensus 706 l~P~ 709 (987)
T PRK09782 706 DIDN 709 (987)
T ss_pred cCCC
Confidence 4443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-21 Score=196.75 Aligned_cols=302 Identities=14% Similarity=0.134 Sum_probs=166.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCC
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~ 228 (637)
.+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+.......+ ...++..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666655322 444566666666666666666666666654321110 12345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 304 (637)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665432 234555666666666666666666666666554322211 123445555566666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
.|+++.+.. +.+...+..+...+.+.|++++|.+.++.+.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 666665442 22344555555556666666666666666554432222344555566666666666666666666554
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS---DGSMDRAIEVFDKMCEHGVSPNLK 459 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 459 (637)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 234444455666666666666666666666554 4555556555555443 345666666666666554444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-19 Score=188.85 Aligned_cols=424 Identities=13% Similarity=0.014 Sum_probs=298.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+......+...|+++.|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3455667788889999999999998875 567888888889999999999999999998887543 6678888899999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|++++|+..|......+. .+......++..+.. ..+........+.. +++...+..+.. +..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999988877665431 122222222222211 12222233332221 222222222222 22222222222
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHH---HHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 269 EVIVEMEHNGVQPN-GRTCGIIISGY---CKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.-+....+. .+. ...+..+...+ ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222211111 111 11111111111 23478999999999998764 23345678888888999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
...+..+ .....|..+...+...|++++|+..|+.+++.. +.+..++..+...|...|++++|...|++..+.. +.+
T Consensus 356 kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 9988652 346688889999999999999999999998864 4468899999999999999999999999999874 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK------STF 496 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~ 496 (637)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.....+. ..+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 7888899999999999999999999998753 235778999999999999999999999998763221111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccC
Q 006640 497 LLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
......+...|++++|..+++++....|.+ ...++.+.|...+++++++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 223334455799999999999987766543 13577888889999998876643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-20 Score=189.39 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=177.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQ 260 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~ 260 (637)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888764 44566778888888888888888888888776432211 2456677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHhH
Q 006640 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL----VIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 336 (637)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 788888888887776642 245667777777777777777777777777665322211 123344445555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666555433 1233444555555555666666666665555432111133445555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCH
Q 006640 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4 234444455555555555555555555555543 3555555555444332 33555555555555544444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-18 Score=183.97 Aligned_cols=328 Identities=9% Similarity=0.052 Sum_probs=150.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++++.+.. |.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3444455555555555555555432 2233334444444445555555555555555543 3344455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|...++++.+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 126 ~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 55555555555544221 34445555555555555555555555544332 1222222222 22444555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcC
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE----ALRFARTMKEYG 313 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~ 313 (637)
.+......++...+..+...+...|++++|...++++..... .+...+..+...|...|++++ |+..|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 544432222223333334444455555555555555544321 233444445555555555443 444555444432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 006640 314 VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYS 392 (637)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 392 (637)
+.+...+..+...+...|++++|...++...+..+ .+...+..+..++.+.|++++|+..++.+.... |+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 22344444444445555555555555544444331 123334444444444555555555554444432 221 2222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 393 ILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+..++...|+.++|...|++..+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233344444555555555544444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-18 Score=187.35 Aligned_cols=452 Identities=8% Similarity=0.022 Sum_probs=265.0
Q ss_pred CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 104 KPSLVTYTTL-LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE-SGNMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 104 ~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
.|+..+.... ...|...|++++|+.++.++.+.+ +.+......|..+|.. .++ +.+..++... +..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHH
Confidence 3344444444 777777888888888888887776 5555556666667776 355 6666665432 224677777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH------------------------------HHHHHHHHhcCCHHH
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY------------------------------NVLVRAWCNEKNITE 231 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~------------------------------~~li~~~~~~g~~~~ 231 (637)
.++..|.+.|+.++|.+++.++.....-.|...+| ..++..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 78888888888888887777765432111222222 111333444444444
Q ss_pred HHHH-----------------------------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CC
Q 006640 232 AWNV-----------------------------MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN-G-VQ 280 (637)
Q Consensus 232 A~~~-----------------------------~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~ 280 (637)
+.++ +..|.+.. +-+......+.-...+.|+.++|.++|...... + ..
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 4333 22221110 112233333333455667777777777776542 0 11
Q ss_pred CChhhHHHHHHHHHHcCC---HHHHHHH-------------------------HHHHHHcCCCC--CHHHHHHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGK---IKEALRF-------------------------ARTMKEYGVHP--NLVIFNLLIKGFVE 330 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~ll~~~~~ 330 (637)
.+......++..|.+.+. ..++..+ +...... .++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh
Confidence 223334456666666554 2223222 1111111 123 45566666666655
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006640 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
++.++|...+....... |+......+..++...|++++|...|+++... +|+...+..+...+.+.|++++|...
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 66667777666665543 44333333444445777777777777776543 34444555666677777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006640 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
+++..+.. +++...+..+.......|++++|+..|++..+. .|+...+..+..++.+.|+.++|+..+++... ..
T Consensus 565 l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~ 639 (987)
T PRK09782 565 LQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LE 639 (987)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 77777653 333333333334444557777777777777764 35666777777777777777777777777766 44
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccc
Q 006640 491 PQK-STFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQI 558 (637)
Q Consensus 491 p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L 558 (637)
|+. ..+..+..++...|++++|+..++++....|.+ ...++.+.|+..++++++++|+++. +....
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~--i~~~~ 717 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL--ITPLT 717 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch--hhhhh
Confidence 553 356666677777777777777777777666543 2346667777777777777777655 34556
Q ss_pred cccccccCCCchhhhhh
Q 006640 559 PNVVSSDQKGSAAALKK 575 (637)
Q Consensus 559 ~~~y~~~g~~~~a~~~r 575 (637)
+++.....+++.+.+..
T Consensus 718 g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 718 PEQNQQRFNFRRLHEEV 734 (987)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666666666665533
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-18 Score=186.10 Aligned_cols=405 Identities=10% Similarity=0.067 Sum_probs=225.7
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+.....-.+......|+.++|++++.+.... .+.+...+..+..++...|++++|..++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 334444555566677788888888888887652 13455567777778888888888888888877764 5556677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...+...|++++|...++++.+..+. +.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 77788888888888888888776433 455 7777777888888888888888887764 4456666677777777788
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCChh-hH----HH
Q 006640 229 ITEAWNVMHKMAASGMKPDV------VTYNTIATAYA-----QNGEA---DQAEEVIVEMEHN-GVQPNGR-TC----GI 288 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ 288 (637)
.++|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8888877776553 2221 01111222221 11122 4555555555532 1111111 11 01
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP---DVITYSTIMNAWS 364 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 364 (637)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 122334455666666666665554311 111 11113445555666666666666554432111 1223344444555
Q ss_pred HcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 365 TAGFMDKCKEIFDDMGKAGI-----------KPD---AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
..|++++|...++.+..... .|+ ...+..+...+...|++++|+++++++.... |.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 55666666666665554421 011 1233344445555555555555555555442 44455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...|++++|++.++++.+.. |+ ...+...+..+...|++++|..+++.+.+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555555555555532 32 33444444455555555555555555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=186.78 Aligned_cols=331 Identities=8% Similarity=0.003 Sum_probs=252.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
...++..+.+.|++++|..+++......+. +...+..++.+....|++++|...|+++.... |.+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 445567778889999999999988887655 45556666677778999999999999998864 556778888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999988753 335677788888899999999999988887665432 23333333 34778899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHH
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK----CKEIFDDMG 380 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~ 380 (637)
.++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++ |...|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 98888765433344455556677888888888988888888765 3467777788888888888875 788888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 006640 381 KAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK- 459 (637)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 459 (637)
+.. +.+..++..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..|+++.+.. |+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 764 3467788888888888888888888888888764 5566777788888888888888888888888753 4443
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+..+..++...|+.++|...|++..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344456678888888888888888766
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-18 Score=186.78 Aligned_cols=412 Identities=10% Similarity=-0.007 Sum_probs=315.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+.++....-.+.+....|+.++|+.++.+..... +.+...+..+...+...|++++|..++++..+..+. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3455556666777889999999999999998643 566778999999999999999999999999887533 67778899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
+..+...|++++|+..+++..+.. |.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999998874 55677 9999999999999999999999999874 3356666778888889999
Q ss_pred HHHHHHHHHHHHHCC---CCCChhhHHHHHHHH-----HHcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 006640 264 ADQAEEVIVEMEHNG---VQPNGRTCGIIISGY-----CKEGKI---KEALRFARTMKEY-GVHPNLV-IF----NLLIK 326 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ll~ 326 (637)
.+.|+..++.+.... ..........++..+ ...+++ ++|+..++.+.+. ...|+.. .+ ...+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 999999988655410 000111222222222 233345 7889999998854 1122221 11 11134
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP---DAHAYSILAKGYVREQ 402 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 402 (637)
.+...+++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+.+..... .......|..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999887532 332 22335778999999999999999988653211 1355677777889999
Q ss_pred CHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 403 EPEKAEELLMTMIESGF-----------HPN---VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++....+ -+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 99999999999987521 123 23556778889999999999999999988643 3677889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|++.+++..+ +.|+. ..+...+..+.+.|++++|+.+++++....|+
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999887 55774 46667777899999999999999999988775
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-17 Score=173.09 Aligned_cols=435 Identities=11% Similarity=0.037 Sum_probs=327.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSL--VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 156 (637)
+-...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++.... .+........+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 44567899999999999999975 4443 344 8888888999999999999998832 1334445555577888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++|+++|+++.+..+. +...+..++..|...++.++|++.++++.... |+...+..++..+...++..+|++.+
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999998765 67788888999999999999999999998764 66666655555555567776799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH------HHHHHHH---H--HcCC---HHHH
Q 006640 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC------GIIISGY---C--KEGK---IKEA 302 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g~---~~~A 302 (637)
+++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ ..++..- . ...+ .+.|
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999874 446777888999999999999998877653211 11111000 0111000 0 1122 3456
Q ss_pred HHHHHHHHHc-C-CCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006640 303 LRFARTMKEY-G-VHPNLV----IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 303 ~~~~~~~~~~-~-~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 376 (637)
+.-++.+... + .++... ...-.+-++...++..+++..++.+...+.+....+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666665542 1 122212 223456678889999999999999998886666778889999999999999999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcC
Q 006640 377 DDMGKAG-----IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-------------HPNVV-IFTTIISGWCSDG 437 (637)
Q Consensus 377 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g 437 (637)
+.+.... .+++......|..+|...+++++|..+++++.+... .||-. ....++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9997643 123445567899999999999999999999987311 12222 3344667788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 006640 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+..+|++.++++....+ -|......+...+...|.+.+|.+.++.... +.|+.. .....+.++...|++++|..++
T Consensus 431 dl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999987653 3888999999999999999999999987765 466644 6668888889999999999999
Q ss_pred HHHhhccccc
Q 006640 517 SKIKNKERTN 526 (637)
Q Consensus 517 ~~~~~~~~~~ 526 (637)
+++.+..|++
T Consensus 508 ~~l~~~~Pe~ 517 (822)
T PRK14574 508 DDVISRSPED 517 (822)
T ss_pred HHHHhhCCCc
Confidence 9998887754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-17 Score=169.44 Aligned_cols=450 Identities=14% Similarity=0.081 Sum_probs=345.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...+++..+.|.+.|.-.|++..+..+...++..... .-..+|-.+.+++-..|+++.|...|.+..+..-..-+..+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 4457888889999999999999999999988864321 12346788899999999999999999888876422224455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006640 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLDLMSREGNVKPNLRTYNVLVR 221 (637)
Q Consensus 146 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 221 (637)
--|...|.+.|+++.+...|+.+.+..+. +..+...|...|+..+ ..+.|..++.+..+.. +.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHH
Confidence 66789999999999999999999886432 5667777777787765 5677888888877753 668888888888
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCh------hhHHH
Q 006640 222 AWCNEKNITEAWNVMHKMA----ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GVQPNG------RTCGI 288 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~ 288 (637)
.+....-+.. +.+|.... ..+..+.+...|.+...+...|+++.|...|...... ...++. .+-..
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 8766554444 66665543 4555678889999999999999999999999887654 112222 23344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPNL-VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 367 (637)
+...+-..++++.|.+.|..+.+.. |+- ..|--++......+...+|...++...... ..++..++.+...+....
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 5666677789999999999998763 443 344444433444577788888888887754 456677777888888888
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKA-GIKPDAHAYSILAKGYVR------------EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
.+..|.+-|..+.+. ...+|..+.-+|.+.|.+ .+..++|+++|.++++.. |.|...-|-+.-.++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 888888877766553 223677777778776643 345788999999999875 778888899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
..|++.+|..+|.+..+... -+..+|..+..+|...|++..|++.|+... +....-+.....+|..++.++|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999998653 256689999999999999999999999864 5555667788999999999999999999
Q ss_pred HHHHHHhhccccc
Q 006640 514 RILSKIKNKERTN 526 (637)
Q Consensus 514 ~~~~~~~~~~~~~ 526 (637)
+.+..+....|++
T Consensus 737 ~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 737 EALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHHhCCcc
Confidence 9999987776653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-15 Score=162.38 Aligned_cols=426 Identities=12% Similarity=0.065 Sum_probs=309.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 115 AALTIQKRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
-...+.|+++.|+..|+++++.. +.+. .++ .++..+...|+.++|+.++++..... .........+...|...|++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 34568999999999999999864 3332 344 88888999999999999999998321 12333444456788899999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
++|+++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 119 d~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 119 DQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999875 566788888889999999999999999999876 55666665555555556777679999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH---------HcCCHhH---HHH
Q 006640 274 MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIF--NLLIKGFV---------EIMDRDG---VDE 339 (637)
Q Consensus 274 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~---------~~~~~~~---a~~ 339 (637)
+.+..+ .+...+..+..+..+.|-...|.++..+-...- .+....+ ...+.-.+ ...++.. +..
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 998753 467777888899999999999987766543211 1111111 00000111 1122333 344
Q ss_pred HHHHHHh-CCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 340 VLALMKE-FRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 340 ~~~~~~~-~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
-++.+.. .+..|.. ....-.+-++...+++.++++.|+.+...+.+....+-.++.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444433 1222321 122344557788999999999999999887666677889999999999999999999999
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcCCh
Q 006640 414 MIESG-----FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-------------SPNLK-TFETLMWGYSEARQP 474 (637)
Q Consensus 414 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~l~~~~~~~g~~ 474 (637)
+.... .+++......|.-+|...+++++|..+++++.+..+ .||-. .+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 97642 123444457889999999999999999999987321 23333 344557778899999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHH
Q 006640 475 WRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERL 542 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l 542 (637)
.+|++.++++.. ..| +......+.+++...|+..+|+..++.+....|++ ...++.+.|.....++
T Consensus 433 ~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 433 PTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999976 445 45688899999999999999999998876665542 1235556666777777
Q ss_pred HhhhccCCC
Q 006640 543 YHKEATTAS 551 (637)
Q Consensus 543 ~~~~~~~~~ 551 (637)
++..|++..
T Consensus 511 ~~~~Pe~~~ 519 (822)
T PRK14574 511 ISRSPEDIP 519 (822)
T ss_pred HhhCCCchh
Confidence 777787765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-16 Score=161.54 Aligned_cols=456 Identities=13% Similarity=0.117 Sum_probs=329.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMD--PDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 164 (637)
.+..++.++...-... +-|+++.+.|.+-+...|+++.+..+...+...... .-...|-.+.++|-..|+++.|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3445555555554322 346777778888888888888888888887765311 1234577788888888999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK----NITEAWNVMHKMA 240 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~ 240 (637)
|.+..+....-....+--|...|...|+++.+...|+.+.... |.+..+...|...|...+ ..+.|..++.+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 8888776433223445567888889999999999999888864 556778888888887765 5677777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---C
Q 006640 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM----EHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY---G 313 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 313 (637)
+.- +.|...|..+..++....-+.. +.+|..+ ...+..+.....|.+.......|++++|...|...... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 653 4577788877777766544443 6666544 34455567788999999999999999999999888654 1
Q ss_pred CCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 314 VHPNL------VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 314 ~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
..++. .+-..+...+-..++.+.|.+.|+.+.+..+ .-+..|..+.......+...+|...+....... ..+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 12222 2233345555666788999999999887642 234455555544455678889999999888753 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESG-FHPNVVIFTTIISGWC------------SDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~~~ 454 (637)
+.+++.+...+.+...+..|.+-|..+.+.. ..+|..+.-+|+..|. ..+..++|+++|.+.+...+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 8888888889999999999999887776542 2357777777777554 23567889999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-ccc------
Q 006640 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER-TNE------ 527 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-~~~------ 527 (637)
. |...-+.+.-.++..|++.+|..+|.+..+... -...+|..++.+|...|++-.|++.++.+..... ++.
T Consensus 644 k-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 K-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred c-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3 777888999999999999999999999976443 2456889999999999999999999999876532 111
Q ss_pred ------ccccccchHHHHHHHHhhhccCCC
Q 006640 528 ------MEAEEDIPVESLERLYHKEATTAS 551 (637)
Q Consensus 528 ------~~~~~~~a~~~~e~l~~~~~~~~~ 551 (637)
..+....+...+.++..+.|++..
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 123456666777777778887765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-13 Score=126.44 Aligned_cols=423 Identities=13% Similarity=0.160 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHH-HHHHHHHHHcC-----------
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR--FNSI-HSIMSQVEENG----------- 137 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a-~~~~~~~~~~~----------- 137 (637)
+.+-|.|+. +..+|...++.-+|+.|...|++.+...-..|++..+-.+. ..-| .+.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 444455544 45678899999999999998887777776666654433222 2111 12222333222
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 006640 138 --------MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV 209 (637)
Q Consensus 138 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 209 (637)
.+.+..++..+|.++++-...+.|..++++......+.+..++|.+|.+-.-. ...+++.+|.... +
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-M 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-c
Confidence 13334445555555555555555555555544444444444555444332211 1134444444433 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCC
Q 006640 210 KPNLRTYNVLVRAWCNEKNITE----AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ-AEEVIVEMEH----NGVQ 280 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~ 280 (637)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 4555555555555555554432 23344444455555555555555544444444321 2222222221 1111
Q ss_pred C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 006640 281 P----NGRTCGIIISGYCKEGKIKEALRFARTMKEYG----VHPN---LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 281 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
| |...+...++.|....+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1 22223333444444444444444433332110 1111 11233333344444444444444444444333
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HH
Q 006640 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---IF 426 (637)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 426 (637)
-|+..+...++.+....+.++-..+++..+...|..-......-+...+++.. ..|+.. -+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChHHHHH
Confidence 34444444444444444444444444444444332211111111111111111 111111 11
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRA-IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG----VHPQKSTFLLLAE 501 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~ 501 (637)
.....-|+. ++.++ ...-.+|.... -.....+.++..+.+.|+.++|.++|....+.+ ..|.......+++
T Consensus 494 ~~~~ak~aa--d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 494 QVAFAKCAA--DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHH--HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111111100 11111 11122333333 334455555556777777777777777664322 2233334445666
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 006640 502 ARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~ 520 (637)
.-.+....-.|...++-|.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 6666677777777776664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-13 Score=131.76 Aligned_cols=506 Identities=11% Similarity=0.051 Sum_probs=382.0
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
++++..|-. .+..-+.+.|+-++.+..+. ++.+...|. ++++...++.|..++.++.+. ++.+..+|.+-
T Consensus 377 P~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 344555543 44566777899999998874 344555554 455666788999999988765 58889999888
Q ss_pred HHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Q 006640 149 INAFSESGNMEEAMDTFWK----MKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP-NLRTYNVLVRAW 223 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~ 223 (637)
...=-.+|+.+...++.++ +...|+..+...|..=...|-..|..-.+..+......-|.-.. -..||+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 8888888999888888765 44568888889998888888888988888888888776652222 256899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 006640 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.+.++-|..+|...++. ++.+...|...+..--..|..++-..+|++....- +.....|.....-+...|++..|.
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999988876 34466778777777777889999999999988763 234566777777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
.++.+..+.. +.+...|-.-+.....+..++.|..+|.+....+ ++...|.--+..-...+..++|++++++.++.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999988775 4467788888888889999999999998887754 56666766666666788999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
++.-...|..+.+.+-+.++.+.|.+.|..-.+. .|..+..|-.+...--+.|.+-.|..++++..-.++. |...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHH
Confidence 3445678888899999999999999998887665 3556677888888888889999999999999877654 7788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--------cccccccch
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN--------EMEAEEDIP 535 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--------~~~~~~~~a 535 (637)
.|..=.+.|..+.|..+..+..+. ..-+...|..-+....+.++--.+...+++.. ..||- =.+...+.|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999888776541 22234577788888888877666666666542 12221 024566777
Q ss_pred HHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhh
Q 006640 536 VESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMY 598 (637)
Q Consensus 536 ~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~ 598 (637)
..=+++++..+|+++.. ...+...|...|.-++-..|+++-..... .-|..|+-|..-|
T Consensus 837 r~Wf~Ravk~d~d~GD~--wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK~i 895 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDA--WAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHccCCccchH--HHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhhhH
Confidence 77888999999998873 44455667778877777766655443333 3478888775444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-13 Score=126.30 Aligned_cols=364 Identities=16% Similarity=0.212 Sum_probs=237.3
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
.+.+..++..||.++++-...+.|.+++.+..+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 45677889999999999999999999999888776788889999998775433 33778888988888999999999
Q ss_pred HHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc--C-----CCCCCHHH
Q 006640 148 VINAFSESGNMEEA----MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE-SVKLLDLMSRE--G-----NVKPNLRT 215 (637)
Q Consensus 148 li~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--~-----~~~~~~~~ 215 (637)
++...++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | ..+.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999987654 5677888899999999999999998888877644 44444444331 1 12335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006640 216 YNVLVRAWCNEKNITEAWNVMHKMAASG----MKPD---VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.++....+....+|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7777888888888888888776554321 2233 23345666777778888888888888877766777788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG- 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 367 (637)
++++..-.|+++-.-+++.+++..|...+.. -.++++..+....+.|+...-..+-.+.+++.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~----------------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSD----------------LREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHH----------------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 8888888888888888888777655322222 12333444444333333221111211111110
Q ss_pred Ch-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHH
Q 006640 368 FM-DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF----HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 368 ~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 442 (637)
++ +.....-.++.+. .......+.++-.+.+.|+.++|.++|..+.+.+. .|......-++..-.+..+...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11 1111112223333 33445556666667788888888888887755432 12222333444455556666666
Q ss_pred HHHHHHHHHCC
Q 006640 443 IEVFDKMCEHG 453 (637)
Q Consensus 443 ~~~~~~m~~~~ 453 (637)
+.+++-|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 66666665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-12 Score=131.63 Aligned_cols=369 Identities=13% Similarity=0.129 Sum_probs=259.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
+.+...-...+.+...|++++|..++.+++... +.+...|.+|...|-..|+.+++...+-.+.... +.|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 345555556666667799999999999999864 4588899999999999999999998777666555 77889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-H----HHHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL-R----TYNVLVRAWC 224 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~----~~~~li~~~~ 224 (637)
....+.|++++|.-.|.+.++..+. +...+---+..|-+.|+...|.+-|.++.... ||.. . ..-.+++.+.
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654 55555666788999999999999999998864 3322 2 2233456666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------------
Q 006640 225 NEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV------------------------ 279 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------ 279 (637)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 7777799999988887622 234556778888999999999998888777655111
Q ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 006640 280 ---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVI 354 (637)
Q Consensus 280 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 354 (637)
.++..++ .+.-++...+..+....+...+.... +..+...|.-+..+|.+.|.+.+|..++..+......-+..
T Consensus 372 ~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 1122221 11222223333333333333344443 23345577777888888888888888888887765555677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE--------SGFHPNVVIF 426 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 426 (637)
.|-.+..+|...|..+.|.+.|..++... +.+..+-..|...|.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 78888888888888888888888877753 33555666677777888888888888877542 2234444444
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~ 445 (637)
-.....+...|+.++-+.+
T Consensus 530 ~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 4455556666666654443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-12 Score=122.94 Aligned_cols=431 Identities=9% Similarity=0.013 Sum_probs=255.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHH
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVE----ENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~ 153 (637)
|.-+|++..-++.|..+++...+. ++.+...|.+-...--.+|+.+....++++.+ ..|+..+...|..=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344556666778888888888773 66677778777666667777777777766543 3466667777766666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPT--TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
..|.+-.+..+.......|+.-. ..+|+.-...|.+.+.++-|+.+|....+. ++.+...|...+..--..|..++
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 66777666666666666555322 345666666666677777777776666654 34455666666666566666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-..+|++.... .+.....|......+-..|+...|..++.+..+... .+...|-.-+.....+..++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 66666666654 233445555555555666666666666666655433 2455666666666666666666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
. .++...|.--+...--.+..++|.++++...+.- +.-.-.|..+...+-+.++++.|...|..-.+. ++.....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 3455555544444445556666666666655542 222345556666666666666666666554443 23344556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG------------------ 453 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------ 453 (637)
-.|...--+.|.+-.|..++++..-.+ |.+...|-..|..-.+.|+.+.|..+..+++..-
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 566665566666666666666665554 5566666666666666666666666655554321
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 454 -----------VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 454 -----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
..-|+.....+...+....++++|.+.|.+..+ +.||. .+|.-+...+.+.|.-++-.+++.+..
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 112344444445555555555555555555544 33332 345555555555555555555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-11 Score=118.02 Aligned_cols=442 Identities=12% Similarity=0.073 Sum_probs=338.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
+...|..-.+.=..+++++.|+.+|++.+... ..+...|...+..-.+++....|..++++++..- |.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 45556666666667889999999999999854 4578888888888899999999999999998752 434456766776
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+=-..|++..|.++|++-.+. .|+...|++.|+.-.+.+.++.|..++++..- +.|++.+|--....--+.|...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHH
Confidence 777889999999999998875 68999999999999999999999999999987 4699999999999999999999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCH---HHHHH
Q 006640 231 EAWNVMHKMAAS-G-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKI---KEALR 304 (637)
Q Consensus 231 ~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~---~~A~~ 304 (637)
.|..+|....+. | -..+...+++...--.++..++.|.-+|+-.++.-+... ...|......--+.|+. ++++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988753 1 011234555555555667889999999988877522211 33444444444455653 44432
Q ss_pred -----HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHH--------HHHHHHcCCh
Q 006640 305 -----FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV--ITYSTI--------MNAWSTAGFM 369 (637)
Q Consensus 305 -----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l--------i~~~~~~g~~ 369 (637)
-++++.+.+ +.|-.+|-..+..-...|+.+...++|+..+..- +|-. ..|..- +-.-....++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 244444443 6788899988988888999999999999998753 3321 112111 1112356789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGY----VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
+.+.++++..++. ++...+|+.-+=-+| .++.++..|.+++...+. ..|...+|...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 455556665544444 578999999999998875 489999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 446 FDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV-HPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+++.++.++. |-.+|......=...|+.+.|..+|+-...... .-....|...++--...|.++.|..+++++..+..
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999997643 677888888888889999999999998875332 22233677888888899999999999999987766
Q ss_pred c
Q 006640 525 T 525 (637)
Q Consensus 525 ~ 525 (637)
|
T Consensus 539 h 539 (677)
T KOG1915|consen 539 H 539 (677)
T ss_pred c
Confidence 5
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-14 Score=132.25 Aligned_cols=443 Identities=15% Similarity=0.135 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYT-TLLAALTIQKRFNSIHSIMSQVEENGMDPD----SIFFNAV 148 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l 148 (637)
....|.+.|..+....+|+..|+-+.+...-|+.-... .+...+.+...+..|++.|+..+..-...+ ..+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34556677777888899999999888766666654332 234667788889999999987775421111 3355666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----------CCCHHHHH
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-----------KPNLRTYN 217 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~ 217 (637)
.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|....+. .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 66778899999999999998775 367766666666777789999999999998753211 12333332
Q ss_pred HHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCHHHHHH
Q 006640 218 VLV-----RAWCNEK--NITEAWNVMHKMAASGMKPDVVT-------------Y--------NTIATAYAQNGEADQAEE 269 (637)
Q Consensus 218 ~li-----~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~-------------~--------~~li~~~~~~g~~~~A~~ 269 (637)
..+ .-.-+.. +.++++-.-.+++..-+.||-.. + -.-..-+.++|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 222 2222221 12222222222222222232100 0 012346788999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 006640 270 VIVEMEHNGVQPNGRTCGIIISGYCK--EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
+++-+.+..-+.....-+.|-..+.- ..++..|.++-+...... +-+......-.+.....|+++.|.+.+++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 98877665332222233333222222 335666666666655432 333333333333344557777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 348 RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFT 427 (637)
Q Consensus 348 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (637)
...-....|+ +.-.+...|++++|++.|-++..- +..+..+...+...|....+...|++++.+.... ++.|+....
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 3221222222 233445667777777776665432 1235666666667777777777777777666554 466677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA-EARRAT 506 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~ 506 (637)
.|...|-+.|+-..|.+.+-+-... ++-|..+...|..-|....-+++++.+|++..- +.|+..-|..|+ .++.|.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 7777777777777776665544332 334666666666667777777777777776544 667776666554 445566
Q ss_pred CCHHHHHHHHHHHhhcccc
Q 006640 507 GLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 507 g~~~eA~~~~~~~~~~~~~ 525 (637)
|++..|..+++....+.|.
T Consensus 674 gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ccHHHHHHHHHHHHHhCcc
Confidence 7777777777777666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-12 Score=131.84 Aligned_cols=365 Identities=13% Similarity=0.130 Sum_probs=275.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
.-.....+...|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-......+. |...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHh
Confidence 3333445556699999999999999986 778899999999999999999999888777776655 77899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN----TIATAYAQNGEAD 265 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~ 265 (637)
.|.++.|.-.|.+..+.. |++...+---...|-+.|+...|..-|.++.....+.|..-+. ..+..+...++-+
T Consensus 220 ~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999875 6777777777889999999999999999998874322322222 3455677778889
Q ss_pred HHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCC
Q 006640 266 QAEEVIVEMEHNG-VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV---------------------------HPN 317 (637)
Q Consensus 266 ~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~ 317 (637)
.|.+.++.....+ -..+...++.++..|.+...++.|......+..... .++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999988876622 234567788999999999999999998888766211 222
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
..++ -+.-++......+....+...+.... +.-+...|..+..+|...|++..|+.+|..+......-+..+|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2221 12223334444444444555555544 34456778889999999999999999999998765555678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHH
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE--------HGVSPNLKTFETLMWG 467 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~ 467 (637)
.+|...|..+.|.+.|+.++... |.+...--.|...+-+.|+.++|.++++.+.. .+..|+..........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998864 55666777788888899999999999988642 2344555555666677
Q ss_pred HHhcCChhHHHHH
Q 006640 468 YSEARQPWRAEEI 480 (637)
Q Consensus 468 ~~~~g~~~~A~~~ 480 (637)
+...|+.++=+..
T Consensus 536 l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 536 LFQVGKREEFINT 548 (895)
T ss_pred HHHhhhHHHHHHH
Confidence 7778877764443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-13 Score=133.95 Aligned_cols=289 Identities=10% Similarity=0.045 Sum_probs=148.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN--TIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~ 266 (637)
.|+++.|.+.+....+.. ++... +........+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 456666655555444321 11222 222223334555555555555555543 23322111 22445555555555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
|...++++.+..+ .+......+...|.+.|++++|..++..+.+.+..+ ......+-
T Consensus 172 Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~--------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH---------------------
Confidence 5555555554432 234445555555555555555555555555443221 11111000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006640 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. ++|....
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 001112222222223344444444444332 2345666666677777777777777777766663 4444222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006640 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
++.+....++.+++++..++..+..+ -|...+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc
Confidence 22233344677777777777665432 2455566677777777777777777777665 557777767777777777
Q ss_pred CCHHHHHHHHHHHh
Q 006640 507 GLTKEAKRILSKIK 520 (637)
Q Consensus 507 g~~~eA~~~~~~~~ 520 (637)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~~~~~l 388 (398)
T PRK10747 375 HKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777766553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-11 Score=114.27 Aligned_cols=366 Identities=13% Similarity=0.078 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
..|...+-.....+.+.|....|+..|...... -+..|.+.+...--..+.+.+..+...... ......=-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~----~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPS----DMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcc----cchHHHHHH
Confidence 444444444444555566666676666666543 122333333322222222222222111110 000111122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHHc
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKE 296 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 296 (637)
+..++....+.++++.-.+.....|++.+...-+....+.....++++|+.+|+++.+..+- .|..+|+.++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 33455555566677776667777666655555555555666667777777777777665321 1344555443 2222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006640 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 297 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 376 (637)
.+-. +.++.+-...--+-.+.|...+.+-|+-.++.+.|...|+...+.++ .....|+.+..-|....+...|++.+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 11111111100123344556666666666777777777777777653 34566777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
+..++-. +.|-..|-.|.++|.-.+...-|+-.|++..+.. |.|...|.+|+.+|.+.++.++|++.|+.....|-.
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 7777654 4466777777777777777777777777777653 556777777777777777777777777777765532
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 457 NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+...+..|...+-+.++..+|...|++-.+ .|..-+ .....-+..-+.+.+++++|..+.....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 556677777777777777777777665532 232222 1122234455667777777777665553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-13 Score=127.12 Aligned_cols=428 Identities=12% Similarity=0.068 Sum_probs=278.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 006640 113 LLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF-NAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKGY 187 (637)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~ 187 (637)
|..-|....-..+|+..|+-+.+...-|+.-.. ..+...+.+..++.+|+++|+-....-+..+ ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455555678888888888877666665332 3345667788899999999987765422222 22344455567
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHHHHHH
Q 006640 188 GIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK------------PDVVTYNTIA 255 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~------------~~~~~~~~li 255 (637)
.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|.+|+..-.. |+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998864 88888777888888889999999999999865322 2333333222
Q ss_pred -----HHHHHcC--CHHHHHHHHHHHHHCCCCCChhh---H------------------HHHHHHHHHcCCHHHHHHHHH
Q 006640 256 -----TAYAQNG--EADQAEEVIVEMEHNGVQPNGRT---C------------------GIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 256 -----~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~~~~ 307 (637)
.-..+.+ +.++++-.-.+++..-+.|+... | ..-..-|.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1111111 12222222222222112222110 0 111346889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHH-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIK-GFVE-IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
-+.+..-+.-...-+.+-. -|.+ -.++..|...-+...... .-+....+.-...-...|++++|...+++.+...-.
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876542222222222222 2233 345666766666655432 223333333333345689999999999999865321
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
-....-.+.-.+-+.|++++|++.|-++... +..+......+...|....+...|++++-+.... ++-|+..+..|.
T Consensus 523 -c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 -CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred -HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 1222233344678899999999999887654 2457778888999999999999999999887764 455788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------ccccccc
Q 006640 466 WGYSEARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEED 533 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~ 533 (637)
..|-+.|+...|.+++-.-- ..-| +.++..-+...|....-++.|+.+|++..-..|.. ..-++.+
T Consensus 600 dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 99999999999998865432 2334 45677777777888888999999999986444431 2346777
Q ss_pred chHHHHHHHHhhhccC
Q 006640 534 IPVESLERLYHKEATT 549 (637)
Q Consensus 534 ~a~~~~e~l~~~~~~~ 549 (637)
.|...++.+-..=|.+
T Consensus 678 ka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHhCccc
Confidence 7777776665444444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=133.13 Aligned_cols=260 Identities=11% Similarity=0.026 Sum_probs=134.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
..++.+.|+++.|.+.+.+..+....+...........+...|+++.|...++.+.+.. +.+...+..+...+.+.|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 33444444444444444444332111111122223444444555555555555544443 23344444444555555555
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 335 DGVDEVLALMKEFRVNPDVITYS-TIMNAW---STAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 407 (637)
+++.+.+..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.+.. .+.+...+..++..+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 5555555555444322 111111 111111 11112222222333333221 113666777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHH
Q 006640 408 EELLMTMIESGFHPNVVI---FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.+++++..+.. ||... ...........++.+.+++.+++..+... -|+ ....++...|.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 77777777652 33221 11122222344667777777777766421 133 456677778888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 483 IMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 483 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
........|+.+.+..+..++.+.|+.++|.+++++.
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5433346677777778888888888888888887765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-12 Score=131.21 Aligned_cols=289 Identities=12% Similarity=0.039 Sum_probs=190.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPN-LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
..|+++.|.+.+.+..+.. |+ ...+-....++...|+.+.|..++.+..+....++..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4677777777777665542 33 3334444566667777777777777766542222222333346667777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHhHHHHHHHH
Q 006640 268 EEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFN-LLIKGF---VEIMDRDGVDEVLAL 343 (637)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 343 (637)
...++.+.+..+ .+..++..+...|.+.|++++|.+.+..+.+.++. +...+. ....++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777776643 34566777777777778887777777777776533 222221 111111 222222222334444
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH--HHHcCCHHHHHHHHHHHHHC
Q 006640 344 MKEFRV---NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA-YSILAKG--YVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 344 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 417 (637)
+.+..+ +.+...+..+...+...|+.++|.+++++..+.. ||... ...++.. ....++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333221 2377888888889999999999999999988864 33321 0012222 23457788899999888876
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 418 GFHPNV--VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 418 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 5566 67789999999999999999999964443356899888899999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-12 Score=121.53 Aligned_cols=418 Identities=12% Similarity=0.070 Sum_probs=251.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
...+-...+-+.++|++++|++.|.+.++. .|| +.-|.....+|...|+++++.+.-.+.++.+ +.-+..+..-..
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRAS 191 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 344555678889999999999999999984 677 7788889999999999999998887777754 333556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--------HHHHh--cCCCCCCHHHHHHHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL--------DLMSR--EGNVKPNLRTYNVLV 220 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~--~~~~~~~~~~~~~li 220 (637)
++-..|++++|+.=. +..++..++....-.-.+.+++ .+-.+ ...+-|+.....+..
T Consensus 192 A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 788888888776322 2222222222222222222222 21111 112334444444333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC---CCCCC---------hhhHH
Q 006640 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-NGEADQAEEVIVEMEHN---GVQPN---------GRTCG 287 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~~---------~~~~~ 287 (637)
..+...-. ..+...+-..|...-..+=..+.. ...+..|...+.+-... ....+ ..+..
T Consensus 259 ~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 259 GSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred hhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 33211000 000000000011000001000110 01222232222221100 00001 11222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 367 (637)
.....+.-.|+.-.|..-|+..++... .+...|--+..+|....+.++....|....+.++ .++.+|-.-...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHH
Confidence 222334456788888888888887652 2233366677778888888888888888877663 35556666666667778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|..-|++.+... +.+...|--+.-+..+.+.++++...|++.++. +|.-+..|+.....+...+++++|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8888888888887754 335566666666667888888888888888876 56677888888888888888999998888
Q ss_pred HHHHCCCC-----CCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 448 KMCEHGVS-----PNLKTF--ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 448 ~m~~~~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..++.... .+...+ -.++..=+ .+++..|..++++..+ +.|..+ .|..|.....+.|+.++|+++|++.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88764211 112222 12222222 3778888888888876 556644 7888888888889999999998876
Q ss_pred h
Q 006640 520 K 520 (637)
Q Consensus 520 ~ 520 (637)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-12 Score=129.14 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=186.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN--VLVRAWCNEKNIT 230 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~ 230 (637)
..|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999999888876642 223333333 45557899999999999999875 35543322 3467889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHHcCCHHHHHHHHHHH
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII-SGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~ 309 (637)
.|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+.+..+ ......+- .+|
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~---------------- 232 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW---------------- 232 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH----------------
Confidence 9999999999875 4467888899999999999999999999999876532 22121110 111
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 006640 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|..++.+..+. +++..
T Consensus 233 ------------~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 233 ------------IGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 01111111112223333344443222 1335556666666777777777777777766663 34442
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.. ++.+....++.+++++..+...+.. |.|+..+..+...|...|++++|.+.|+.+.+. .|+..++..+..++.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 22 2223334577777777777766653 555666667777777777777777777777763 467777777777777
Q ss_pred hcCChhHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
+.|+.++|.+++++..
T Consensus 373 ~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 373 RLHKPEEAAAMRRDGL 388 (398)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 7777777777776653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-15 Score=143.71 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=104.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006640 77 KLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (637)
.+...+.+.|++++|++++....... .+.|+.-|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 35677788899999999886554432 23344555555556667788888998888888765 4456667777776 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+++++|.+++++..+.. ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766543 4566677788888888888888888888776544556777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 006640 236 MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 315 (637)
+++.++.. +.|....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888763 2256777788888888888888888887776653 3456677788888888888888888888887754 5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006640 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMK 345 (637)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (637)
.|+.+...+..++...|+.++|..+..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 577777888888888888888887776653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-15 Score=143.96 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444444455555555443322221 1122233333334444444555555555554443221 23333334333 34445
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006640 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 377 (637)
+++|.+++....+. .++...+...+..+...++++.+..+++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555444443322 1233334444444444444444444444433211 12334444444444445555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006640 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+.++.. +.|......++..+...|+.+++.+++....+.. +.|+..|..+..+|...|+.++|+..|++..+... .|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cc
Confidence 544432 1134444444444444455554444444444332 33334444444555555555555555555444321 14
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 458 LKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+.....+..++...|+.++|.++.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444444455555555555444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-10 Score=109.85 Aligned_cols=381 Identities=14% Similarity=0.097 Sum_probs=269.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 006640 103 HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT-STYN 181 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~ 181 (637)
...|.+.+-.....+.+.|....|.+.|...+..- |.....|..|.... .+.+.+. .....++..+. ..--
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVVGLPSDMHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHhcCcccchHHHHH
Confidence 34455555555566667788888888888776543 55555665554433 2233322 22221111011 1112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM--KPDVVTYNTIATAYA 259 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~ 259 (637)
-+..++-...+.++++.-.+.....| ++.+...-+....+.-...++++|+.+|+++.+... --|..+|+.++- .
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 34566767778889988888888876 555555555566667788999999999999998731 125677776653 3
Q ss_pred HcCCHHH---HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 006640 260 QNGEADQ---AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 260 ~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (637)
++.+-.- |..++ .+ . +--+.|+..+.+-|.-.++.++|..+|++..+.+ +.....|+.+..-|....+...
T Consensus 309 ~~~~skLs~LA~~v~-~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVS-NI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HhhhHHHHHHHHHHH-Hh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 3332221 22221 11 1 2245778888899999999999999999999876 5567789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|.+.++...+.. +.|-..|-.|..+|.-.+...-|+-.|++..... +.|...|.+|...|.+.+++++|++.|.....
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999986 4588999999999999999999999999998864 56899999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006640 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKTF---ETLMWGYSEARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 489 (637)
.| ..+...+..+...|-+.++.++|...|++-.+ .|.. +..|. .-|..-+.+.+++++|..+.......
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-- 536 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-- 536 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--
Confidence 76 44668999999999999999999999988765 2332 33222 22444555666776666554433221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 490 HPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 490 ~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-..+||..+++.+...
T Consensus 537 ----------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ----------------ETECEEAKALLREIRKI 553 (559)
T ss_pred ----------------CchHHHHHHHHHHHHHh
Confidence 23457777777776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-09 Score=104.05 Aligned_cols=418 Identities=11% Similarity=0.049 Sum_probs=313.7
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+++..|..-+..=.++.....|+.++++.+.. .|-+. .|.-.+..--..|+...|.++|++-.+ ..|+...|.
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~ 178 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWL 178 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHH
Confidence 3567888988999999999999999999999874 34332 344445455567999999999998766 489999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHh
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG-NVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~ 225 (637)
+.|..=.+-..++.|..++++.+-. .|++.+|......-.++|....|..+|+...+.- .-..+...+.+....-.+
T Consensus 179 sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 4899999999999999999999999999887642 111123345555555567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEV--------IVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
+..++.|.-+|+-.++. ++.+ ...|......--+-|+....... ++.+++.+ +.|-.+|-..++.-..
T Consensus 257 qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHh
Confidence 88899999999988875 2333 34454444444445665444332 34444443 3577888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-
Q 006640 296 EGKIKEALRFARTMKEYGVHPNL--VIFNLLI--------KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS- 364 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~- 364 (637)
.|+.+...++|++.+..- +|-. ..|.-.| -.-....+.+.+.++++..++. ++...+|+.-+=-.|+
T Consensus 335 ~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH
Confidence 999999999999998763 4421 1222111 1123567888899999988874 4455666665544443
Q ss_pred ---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 365 ---TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 365 ---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
++.++..|.+++...+. ..|-..++...|..-.+.++++.+.+++++.++-+ |.|-.+|......-...|+.+.
T Consensus 413 feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence 67889999999998774 47889999999999999999999999999999976 6788899999988889999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 442 AIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 442 A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
|..+|+-++... +......|-+.|..=...|.++.|..+++++.+. .+-...|..++
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 999999998752 2223446777777778899999999999999763 33333555444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-13 Score=131.20 Aligned_cols=286 Identities=17% Similarity=0.091 Sum_probs=226.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
-+..+|...|.++... +.-+..+...+..+|...+++++|+++|+.+.+... -.+..+|.+.+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 4567899999986554 333446667888999999999999999999877531 1245667666554422 22333
Q ss_pred HH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 305 FA-RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
++ +.+.+.. +..+.+|.++.+.|.-.++.+.|++.|+......+ ....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 3333332 66788999999999999999999999999988652 277889988888899999999999999988653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
+.+-.+|--|...|.|+++++.|+-.|+++.+.+ |.+.+....++..+.+.|+.++|+++|+++...+.+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2244566678889999999999999999999876 678888889999999999999999999999987654 6666556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
-+..+...++.++|+..++++++ +.|+.. .+..++..|.+.|+.+.|..-|.-+....|
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66778888999999999999988 778765 677899999999999999988877765544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-11 Score=108.36 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444444444444444432222233333444444444444444444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-11 Score=106.64 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=113.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChH
Q 006640 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT------TSTYNTLIKGYGIAGKPE 194 (637)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~ 194 (637)
.+.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|.++.|+++.+.+.++ || ..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45666666666666543 444555566666666666666666666666554 22 122334455566666666
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 006640 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEV 270 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 270 (637)
.|..+|..+.+.+. --.....-|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..+
T Consensus 125 RAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 66666666655431 22344555666666666666666666655554433221 2233444444444555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006640 271 IVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
+.+..+.+. ..+..--.+.+.+...|+++.|++.++.+.+.+..--..+...+..+|.+.|+.++....+..+.+
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555544322 122333334445555555555555555555443222233444444455555555555444444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-12 Score=125.30 Aligned_cols=282 Identities=11% Similarity=0.071 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHH-H
Q 006640 123 FNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGL--TPTTSTYNTLIKGYGIAGKPEESVK-L 199 (637)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~-~ 199 (637)
..+|...|.+.... +.-+..+...+..+|...+++++|.++|+.+.+..+ ..+...|.+.+--+- + +-++. +
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHHH
Confidence 45555666553322 233334555566666666666666666666655421 113344444443221 1 11111 1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 200 LDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 200 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
-+.+.... +..+.+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 410 AQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 12222221 334566666666666666666666666666654 23 45666666666666666666666666655432
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 006640 279 VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST 358 (637)
Q Consensus 279 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (637)
. .+-..|.-+.-.|.+.++++.|.-.|+++.+.+ +.+.+....+...+-+.|+.++|+.++++......+ |+..---
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 1 122334445566666666666666666666554 445555566666666666666666666666655432 3333334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 359 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
.+..+...+++++|+..++++.+. ++.+..++..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 444555666677777777666654 2334556666666677777777776666666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-10 Score=108.11 Aligned_cols=291 Identities=14% Similarity=0.151 Sum_probs=143.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++.+|.++..+-.+.+ +.....|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+-+..+.....|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 566777766666655543 222344444555555666666666666666554224445555556666666666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 006640 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
-..++.+.+. .+..+......+|.+.|++.....++..+.+.+.-.+...-..
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------------- 227 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------------- 227 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH--------------------------
Confidence 6666665543 3445566666666666666666666666666654333211000
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTI 429 (637)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (637)
...+|..+++-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|.. ..
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 0112233333222222223323333333221 1223444444445555555555555555555544333331 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
.-.+.+-++...-++..++-.+.- +-++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|.-+.+++.+.|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCCh
Confidence 112334444444444444443321 11334455555555555555555555554443 445555555555555555555
Q ss_pred HHHHHHHHHH
Q 006640 510 KEAKRILSKI 519 (637)
Q Consensus 510 ~eA~~~~~~~ 519 (637)
.+|.+..++.
T Consensus 378 ~~A~~~r~e~ 387 (400)
T COG3071 378 EEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-10 Score=110.41 Aligned_cols=455 Identities=11% Similarity=0.042 Sum_probs=282.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCC----------
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE--NGM---------- 138 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~---------- 138 (637)
++...--+++.+.-.|++..|..+...-.- ...|..+......++.+..++++|..++..... ..+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 344444466777777777777666554322 234666666667777777788888777762210 000
Q ss_pred -CCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHH
Q 006640 139 -DPDSIF-----------FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL---IKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 139 -~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m 203 (637)
.+|..- +-.-...|....+.++|...|.+.... |...+..+ +....- ...+-..+|+.+
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~ml--t~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHML--TAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhc--chhHHHHHHhcc
Confidence 011000 000012233444566666666666554 33333332 222211 111222233221
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006640 204 SREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG 283 (637)
Q Consensus 204 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 283 (637)
.-.-....+......+.........-++....-.+..-.+..-+........+-+...+++.+..++++.+.+... +..
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~ 278 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHL 278 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCc
Confidence 1000001122222222221110000000000000011112334556666677777888999999999998887643 566
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 363 (637)
..+..-|.++...|+..+-..+-.++.+.- |....+|-++.--|...|...+|.+.|........ .-...|-.....|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHh
Confidence 666666778888888887777777777653 56677898888888888999999999988766542 2346788888899
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
+..|..++|+..+....+.-.. ..--+--+.--|.+.++.+.|.+.|.+..... |.|+...+-+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHH
Confidence 9999999999888877663111 11112223445778899999999999988764 778888888888888888999999
Q ss_pred HHHHHHHHC--CCC---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 444 EVFDKMCEH--GVS---P-NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 444 ~~~~~m~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
.+|+..+.. .+. + -..+++.|+.+|.+.++.++|+..+++..... .-+..++..++-++...|+++.|...+.
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 999887631 111 1 34468888999999999999999999887632 2356788889889999999999999999
Q ss_pred HHhhccccccccccccchHHHHHHHHhh
Q 006640 518 KIKNKERTNEMEAEEDIPVESLERLYHK 545 (637)
Q Consensus 518 ~~~~~~~~~~~~~~~~~a~~~~e~l~~~ 545 (637)
+..-..|+ -..+.+.+..+++.
T Consensus 514 KaL~l~p~------n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 514 KALALKPD------NIFISELLKLAIED 535 (611)
T ss_pred HHHhcCCc------cHHHHHHHHHHHHh
Confidence 99887664 23566677777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-10 Score=107.04 Aligned_cols=292 Identities=12% Similarity=0.117 Sum_probs=179.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|++..|++...+-.+.+.. ....|..-+.+--+.|+.+.+-..+.+..+.. -.++....-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 59999999999998887654 34566666777888999999999999998752 13566777888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 006640 235 VMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 314 (637)
-++++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+...-..
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------------- 227 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------------- 227 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH--------------------------
Confidence 999998876 44677888899999999999999999999999887544321100
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSIL 394 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (637)
...+|..+++-....+..++....++..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|. .. .
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-R 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-H
Confidence 0112222332222222222223333333221 122334444455555555555555555555555543333 11 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.-.+.+-++.+.-++..++-.+.. +.++..+.+|+..|.+++.+.+|...|+...+. .|+..+|+-+..++.+.|++
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCh
Confidence 112334455555444444444331 344455555555555555566665555555442 35555555555556666665
Q ss_pred hHHHHHHHHHH
Q 006640 475 WRAEEILQIMK 485 (637)
Q Consensus 475 ~~A~~~~~~m~ 485 (637)
.+|.+++++..
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-10 Score=109.26 Aligned_cols=351 Identities=11% Similarity=0.040 Sum_probs=207.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
-...+-|.++|.+++|++.|.+.+.. .|| +..|.....+|...|++++..+--.+..+.++. -+.++..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 34455677899999999999999985 567 888999999999999999998888888876432 34566777778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHcCCHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA-SG--MKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g--~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
.|++++|+.-..-..-.+++. |.. ...++.-..+ ..|..-.++-.+ .+ +-|+.....+....+...-
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s-~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~---- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NAS-IEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP---- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cch-hHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----
Confidence 888888765333222221111 111 1111111111 111222222222 11 2234333333332221100
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHH----H-cCCHHHHHHHHHHHHHcC---CC---CC------HHHHHHHHHHHH
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYC----K-EGKIKEALRFARTMKEYG---VH---PN------LVIFNLLIKGFV 329 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~----~-~g~~~~A~~~~~~~~~~~---~~---~~------~~~~~~ll~~~~ 329 (637)
......+.......+..++. . ...+.+|...+.+-.... .. .| ..+...-...+.
T Consensus 266 --------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 --------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred --------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00000000011111111111 1 011233333222211100 00 01 111111112233
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEE 409 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 409 (637)
-.|+..++..-|+..+.....++ ..|--+..+|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 45777788888888877654433 236667777888888888888888888765 3467778777888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 410 LLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
-|++.+... +.+...|-.+..+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+...+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888888764 556667777777777888888888888888775 334566888888888888888888888888765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-09 Score=99.06 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=52.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChh
Q 006640 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL-MWGYSEARQPW 475 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~ 475 (637)
.+.-..++++.+..++.+..--...|... -.+..+++..|++.+|.++|-......++ |..+|.++ .++|.+.++++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 33344445555555555544322222222 23445555555555555555544432232 34444333 34445555555
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 476 RAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
-|++++-++. -..+.- ....+.+.|.+++.+=-|.+.|+.+...
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 5554433221 111111 2223344455555555444444444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-08 Score=97.96 Aligned_cols=424 Identities=14% Similarity=0.108 Sum_probs=251.5
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 162 (637)
...|+-++|......-...+ ..+.+.|..+.-.+...+++++|+..|..+++.+ +.|..++.-|.-.-++.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 34567777777766666533 3466777777766666777778888887777765 556667766666666667777666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHH
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV------RAWCNEKNITEAWNVM 236 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~~~ 236 (637)
..-.++.+..+. ....|..++.++.-.|+...|..+++...+.....|+...+.-.. ....+.|..++|.+.+
T Consensus 130 ~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666666654322 455677777777777777778777777766543345554443322 2334566777777666
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHHcCCHHHHH-HHHHHHHHcC
Q 006640 237 HKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS-GYCKEGKIKEAL-RFARTMKEYG 313 (637)
Q Consensus 237 ~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~ 313 (637)
..-... ..|.. .-..-...+.+.+++++|..++..++..+ ||...|...+. ++.+-.+.-+++ .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 554322 11222 22344556677778888888887777653 45555544433 333333333444 455554432
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-----
Q 006640 314 VHPNLVI-FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK----AG----- 383 (637)
Q Consensus 314 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----- 383 (637)
.|.... -..=++......-.+...+.+..+.+.|+++ ++..+.+.|-.-...+-..++...+.. .|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 111110 0000111111112233445556666666543 334444444322222211222222111 11
Q ss_pred -----CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 384 -----IKPDAHAYS--ILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 384 -----~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
-+|....|+ -++..|-+.|+++.|...++..+.. .|+. ..|..=...+...|++++|...+++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~- 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT- 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-
Confidence 145555554 4567788999999999999999876 5554 4556667889999999999999999988653
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHH----HHHH--HHHHHHHcCCHHHHHHHHHHHhh
Q 006640 456 PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHP--QKS----TFLL--LAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~----~~~~--l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
||...=..-..-..++.+.++|.++.....+.|... +.. .|-. =+.+|.|.|++.+|.+-+..+..
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 455544455666778999999999988887666421 111 1222 24678999999999888877753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-09 Score=104.25 Aligned_cols=284 Identities=10% Similarity=-0.014 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS 291 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 291 (637)
+......-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33333344444444445555555555444432 2233333333334444444444444434444331 233445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 006640 292 GYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 371 (637)
.|.-.|+..+|.++|.+....+ +.=...|-.+...|+-.+..++|...+...-+.-. -...-+--+.--|.+.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHH
Confidence 5555555555555555544322 11123455555555555555555555444332110 010111112223455556666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----G--FHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
|.+.|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... + ...-..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 666665555432 335555555555555555666666666554411 0 001223455566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 446 FDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
|++.+.... -|..++.++.-.|...|.++.|.+.|.+... +.|+..+...++..+
T Consensus 478 ~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 666665432 2555666666666666666666666665443 556655555444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-10 Score=105.47 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444444455555555555555555444321 1233344444444444444444444444444432 2333344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGL-TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+...|++++|...|++...... ......+..+...+...|++++|...|++..... +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 4444444444444444443211 0112233333334444444444444444443321 222333333334444444444
Q ss_pred HHHHHHHHHH
Q 006640 231 EAWNVMHKMA 240 (637)
Q Consensus 231 ~A~~~~~~~~ 240 (637)
+|...+++..
T Consensus 187 ~A~~~~~~~~ 196 (234)
T TIGR02521 187 DARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-07 Score=94.54 Aligned_cols=434 Identities=11% Similarity=0.079 Sum_probs=211.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
+..|-.-...+.++|+...-+..|+..+.. -+......|...+.-....+-++.+..+|++.++. ++..-+--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677778889999999999887763 11123346788888888888888999999988864 3344666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCC--HHHHHHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESG------LTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPN--LRTYNVL 219 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~--~~~~~~l 219 (637)
.+++.+++++|.+.+....... .+.+-..|.-+-...+++-+.- ....++..+... -+| ...|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHH
Confidence 7888888888888887765321 1113334444444444332221 122233333322 123 2456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------C------CHHHHHHHHHHHHHC
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQN----------------G------EADQAEEVIVEMEHN 277 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~ 277 (637)
..-|.+.|.+++|..+|++....- .+..-|+.+.+.|++- + +++-....|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 777777777777777766665431 1222222222222211 1 112222223332221
Q ss_pred CC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHhHHHHH
Q 006640 278 GV-----------QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP------NLVIFNLLIKGFVEIMDRDGVDEV 340 (637)
Q Consensus 278 ~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~ 340 (637)
.. +.++..|..-+.. ..|+..+-...|.++...- .| -...|..+...|-..|+.+.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 10 1122223222222 1334444444555444321 11 122455555666666666666666
Q ss_pred HHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHH
Q 006640 341 LALMKEFRVNPD---VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-----------------PDAHAYSILAKGYVR 400 (637)
Q Consensus 341 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~ 400 (637)
|++..+...+.- ..+|..-..+=.+..+++.|+++.+.....--+ .+..+|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 666554332211 123333333334445555555555554321000 012334444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCChhH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSE---ARQPWR 476 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~---~g~~~~ 476 (637)
.|-++....+++++.+..+ .++...-....-+-.+.-++++.++|++-+..-..|+.. .|+..+..+.+ ..+.+.
T Consensus 490 ~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 5566666666666655432 122222222223334445555555555554443334433 44444443322 124555
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 477 AEEILQIMKAFGVHPQKS--TFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
|..+|++..+ |..|... .|......--+.|....|..+++++
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666555 3334332 2222333333445555555555554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-10 Score=118.06 Aligned_cols=269 Identities=11% Similarity=-0.018 Sum_probs=184.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 006640 104 KPSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE---------SGNMEEAMDTFWKMK 169 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 169 (637)
..+...|...+++... .+++++|..+|++.++.. |.+...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 124678889999988764 4455666666655442 234789999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
+.++. +..++..+...+...|++++|...|++..+.+ |.+...+..+...+...|++++|+..+++..+.... +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 88654 77888888888889999999999999998875 556778888899999999999999999999886422 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...+.++.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3334455566788999999999888765433345567778888889999999999998876542 233445566666667
Q ss_pred HcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 330 EIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 46666666654421 11222222 33344556777776666 7776643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-08 Score=96.70 Aligned_cols=430 Identities=12% Similarity=0.095 Sum_probs=287.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
+-.++.. .+.+++...+++.+.++.. .+-...|.....-.+...|+.++|....+..++.. ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 3334443 3668888999998888873 34455555555555667889999999888887754 4567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
..++++|++.|......+.. |...|.-+.-.-++.++++.....-....+.. +.....|..++.++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999987654 67788888777888899998888887777653 4456789999999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 235 VMHKMAASG-MKPDVVTYNTIA------TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 235 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+++...+.. -.|+...+.... ....+.|.++.|.+.+..-... +......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999998764 246665554332 3345678888888877655432 21223344556778899999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHHcCCHhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIK-GFVEIMDRDGVD-EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
.++.. .||..-|...+. ++.+..+..++. .+|....+.-.. .......-++......-.+....++....+.|++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99887 466665555544 443333333444 556655443211 1111111111111222334445666677777765
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC----------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 006640 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIE----SG----------FHPNVVIFTT--IISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 449 (637)
+ ++..+...|-.-...+-..++.-.+.. .| -+|....|+. ++..+-+.|+++.|+.+.+.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 444444444322211111111111111 10 1567777764 566788999999999999999
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 450 CEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 450 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+.+ .|+.+ .|..-.+.+.|.|..++|...+++..+.+ .||...-..-+.-..++.+.++|.++...-.
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 885 46655 67777889999999999999999987643 2454444466677788889999988876653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=116.49 Aligned_cols=269 Identities=7% Similarity=-0.021 Sum_probs=196.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 006640 139 DPDSIFFNAVINAFSE-----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI---------AGKPEESVKLLDLMS 204 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 204 (637)
+.+...|...+.+-.. .+++++|...|++..+..+. +...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4555656555555322 13468999999999987644 55667666665542 244789999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh
Q 006640 205 REGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 205 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
+.. |.+...+..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus 332 ~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 875 5678899999999999999999999999999875 335677888999999999999999999999887543 223
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 364 (637)
.+..++..+...|++++|+..++++.+...+.+...+..+...+...|+.++|...+..+.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3344555677789999999999998765423355667778888999999999999999876653 224455566666777
Q ss_pred HcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 365 TAGFMDKCKEIFDDMGKAG-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..| +.|...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47877777766531 12222222 44456667888877776 8887653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-07 Score=92.50 Aligned_cols=290 Identities=13% Similarity=0.167 Sum_probs=150.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHc
Q 006640 226 EKNITEAWNVMHKMAASGMKP------DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN---GRTCGIIISGYCKE 296 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 296 (637)
.|+..+-...+.+..+. +.| -...|..+...|-..|+++.|..+|++..+...+.- ..+|..-..+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34445555555555432 122 124566666777777777777777776655433111 23344444444455
Q ss_pred CCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 297 GKIKEALRFARTMKEYGVH-----------------PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 297 g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
.+++.|+++.++.....-. .+...|...++.--..|-++....+++.+.+..+.....+.| .
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-y 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-Y 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-H
Confidence 5666666666655322100 022334444444445566666666666666654432222222 2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVI--FTTIISGW 433 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~ 433 (637)
...+....-++++.+++++-+..-..|+ -..|+..+.-+.+ ...++.|..+|++..+ +.+|...- |-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 2223344556666666665444322233 2445555554443 2356777778877777 44443321 11111222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS---TFLLLAEARRATGL 508 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~ 508 (637)
-..|....|+.+++++... +++.. ..|+..|.--...=-+.....+|++..+ .-|+.. ......+.-...|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhh
Confidence 3457777777777776543 33322 3566665543333334455666666665 345533 33455667778888
Q ss_pred HHHHHHHHHHHhh
Q 006640 509 TKEAKRILSKIKN 521 (637)
Q Consensus 509 ~~eA~~~~~~~~~ 521 (637)
++.|..++.-..+
T Consensus 674 idRARaIya~~sq 686 (835)
T KOG2047|consen 674 IDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHhhhh
Confidence 8988888876653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-10 Score=103.95 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=173.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
.....+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+..+. +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 346678888899999999999999999998765 566788899999999999999999999999987644 667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 185 KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA 264 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 264 (637)
..+...|++++|.+.|++.......+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998753233456678888999999999999999999998764 33567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 3345677778888999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-09 Score=108.77 Aligned_cols=428 Identities=13% Similarity=0.103 Sum_probs=228.7
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
..|+-++|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|-..+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4455599999999999999999988 8988887777777788888888888888776654 577888999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHHH----CCCCCCHHHH---------------HHHHHHHHhcCChHHHHHHHHHHHh
Q 006640 148 VINAFSESGNMEE---AMDTFWKMKE----SGLTPTTSTY---------------NTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 148 li~~~~~~g~~~~---A~~~~~~m~~----~~~~~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|..+|...||+.. ..+.++.+.. .|+. ....| ...+....-.|-++.+++++..++.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999888654 2222222211 1211 11111 1223333344555555555544443
Q ss_pred cCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh
Q 006640 206 EGNVKPNLRTYNVLVRAWCN-EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
.....|..+ .++-+.. ...+++-..+.....+ .|++.+|..++..-...|+.+.|..++.+|.+.|++.+..
T Consensus 168 sa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 168 SAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred ccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 221111111 1222222 1222332222222222 3666677777777677777777777777777777666655
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH------------------------HHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG------------------------VDEV 340 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~------------------------a~~~ 340 (637)
-|-.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.... |.+.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 55555444 56666666666666667777766666555544444322111 1111
Q ss_pred HH------------HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCC--
Q 006640 341 LA------------LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG--I-KPDAHAYSILAKGYVREQE-- 403 (637)
Q Consensus 341 ~~------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~-- 403 (637)
++ ...-.|......+|...+. ....|.-+...++-..+..-. . ..++..|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 10 0000122222233332222 223455555555555543211 0 1123333333333322111
Q ss_pred --------------------HHHHHHHHHHHHH----------------CCCC-------CCHHHHHHHHHHHHhcCCHH
Q 006640 404 --------------------PEKAEELLMTMIE----------------SGFH-------PNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 404 --------------------~~~A~~~~~~~~~----------------~~~~-------~~~~~~~~li~~~~~~g~~~ 440 (637)
..+..++...... .... +-...-+.++..++..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100 0000 01112334444555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA--FGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+++..-++.... .-| ..|..|+.-|.+..+.+.|..+.++... ..+..|..-+..+.+++.+.+....+..+++.
T Consensus 477 K~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555444433322 111 4678888888888999999888888742 33445666788899999999999999999988
Q ss_pred Hhhc
Q 006640 519 IKNK 522 (637)
Q Consensus 519 ~~~~ 522 (637)
+...
T Consensus 554 ~ks~ 557 (1088)
T KOG4318|consen 554 DKSS 557 (1088)
T ss_pred hhHH
Confidence 8654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-07 Score=87.55 Aligned_cols=306 Identities=9% Similarity=0.012 Sum_probs=217.2
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhh
Q 006640 210 KPNLRTYNVLVRAWC--NEKNITEAWNVMHKMAAS-GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRT 285 (637)
Q Consensus 210 ~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 285 (637)
+|...+...-+.+++ ..++...|...+-.+... -++-|......+...+...|+.++|+..|++....+ |+ ...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 333333333444433 334444444444433332 255677888899999999999999999999886542 32 222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
.....-.+.+.|+.+....+...+.... .-....|..-+...-..+++..|..+-+..++... .+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2223344567788888887777776432 12333344444444556777888888777776542 355556556677888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII-SGWCS-DGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~ 443 (637)
.+++++|.-.|+...... +-+..+|..|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..|.- ..--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999987753 457899999999999999999998888776654 355666666664 33332 22357888
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 444 EVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+++++... +.|+.. ..+.+...|...|+.++++.++++... ..||......+.+.+...+.+++|...+..+...
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99988877 457755 667778899999999999999999876 7789999999999999999999999999999888
Q ss_pred ccc
Q 006640 523 ERT 525 (637)
Q Consensus 523 ~~~ 525 (637)
.|.
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-10 Score=104.96 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=196.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
-+.+..+|.+.|.+.+|.+.|+...+. .|-+.||..+-..|.+..++..|..++.+-.+.- +-|+.....+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 366889999999999999999988876 6778889999999999999999999999887753 3455555677888889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.++.++|.++++...+.. +.++.....+...|.-.+++|.|+..++++.+.| .-++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998864 4577777778888889999999999999999998 56888999999999999999999999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 446 FDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 446 ~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
|++....--.|+. ..|-.+.......|++.-|.+.|+-.... .|+ .+.++.+.-+-.+.|++++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999865444443 47888888888999999999999987653 333 568888888889999999999999998777
Q ss_pred ccc
Q 006640 523 ERT 525 (637)
Q Consensus 523 ~~~ 525 (637)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-08 Score=99.89 Aligned_cols=408 Identities=14% Similarity=0.076 Sum_probs=233.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 006640 103 HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT-STYN 181 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~ 181 (637)
+.-|+..|..+.-++...|+++.+.+.|++....- -.....|..+...|...|.-..|..+++.-......|+. ..+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34466666666666677777777777777665432 234456666666777777766777776665544322332 2232
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCC
Q 006640 182 TLIKGYGI-AGKPEESVKLLDLMSREGN---VKPNLRTYNVLVRAWCN-----------EKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 182 ~li~~~~~-~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~~g~~~ 246 (637)
..-..|.+ .+..+++++.-.+.....+ -......+..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22233332 3445555554444433100 01223344444444432 12234666667766655421
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
|+.....+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 2222222444566667777777777777666555566677777777777777777777766665431 111111111111
Q ss_pred HHHHcCCHhHHHHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHH-HcCChHHHHHHHH
Q 006640 327 GFVEIMDRDGVDEVLALMKE----------------------------FRVNPDVITYSTIMNAWS-TAGFMDKCKEIFD 377 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~----------------------------~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~ 377 (637)
.-...++.+++......+.. ..+.....++..+..-.. +.........
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 11112222222222111110 011111222222222111 1111110001
Q ss_pred HHHHCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 378 DMGKAGIK--PD------AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 378 ~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
+.+.... |+ ...|......+.+.+..++|...+.+..+.. +-....|......+...|..++|.+.|...
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111111 22 3456677788889999999999999888763 556677777788889999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCChhHHHH--HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 450 CEHGVSPNL-KTFETLMWGYSEARQPWRAEE--ILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 450 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
... .|+. ....++...+...|+..-|.. ++..+.+ +.|+ .+.|..++..+...|+.++|.+.|..+.+.
T Consensus 711 l~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 884 4654 488999999999998887777 8888887 4454 679999999999999999999999887655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-09 Score=99.70 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
|..--+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|..+|.+-.+++.|+.++.+-.+.- +-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 3344467899999999999999999988776 4667888899999999999999999999988762 445555566778
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+...++.+++.++++...+.. +.++.....+...|.-.++++.|+..+++++..|+. ++..|+.+.-.|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999998865 357777788888899999999999999999999864 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 407 AEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++.-|.+.....-.|+ ...|-.+.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999887543444 457889998899999999999999999876532 5678999988889999999999999988
Q ss_pred HHCCCCCC
Q 006640 485 KAFGVHPQ 492 (637)
Q Consensus 485 ~~~g~~p~ 492 (637)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 76 5555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-07 Score=87.98 Aligned_cols=403 Identities=12% Similarity=0.078 Sum_probs=264.3
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR--FNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
.+...--..+..|...++-+.|+....+.+..- ...--+.++.-+...|- .+.... +...+..- +. --.
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~-ykevvrec-p~----aL~ 165 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLA-YKEVIREC-PM----ALQ 165 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHh-hhHHHHhc-ch----HHH
Confidence 344444556777888888889988777654321 12223444443333332 222221 22221110 11 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI--AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
.|.+..+.+ +..+...=..|....++|........+.++++ .++-..|...+-.+.....++.|+.....+...+..
T Consensus 166 ~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~ 244 (564)
T KOG1174|consen 166 VIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY 244 (564)
T ss_pred HHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh
Confidence 111222111 11111111122222333444444444555443 455556666665555555577889999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
.|+.++|+..|++.... .|+. .....-.-.+.+.|+++.-..+...+.... +-....|-.-+......++++.|+.
T Consensus 245 ~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999998764 2332 222233344567888888888877775532 1233344444555667889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
+-.+.++.. +.+...+-.-...+.+.++.++|.-.|+...... +.+..+|..|+..|...|++.+|.-.-+...+. +
T Consensus 322 ~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 322 FVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred HHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 999998764 4556666666677889999999999999988764 357899999999999999999998888776654 3
Q ss_pred CCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006640 385 KPDAHAYSILA-KGYVR-EQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 385 ~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
+.+..+.+.+. ..+.- .---++|.+++++..+. .|+. ...+.+...|...|..++++.++++... ..||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHH
Confidence 45666666663 33332 22347899999988875 4554 5667778889999999999999999987 45899999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
+.|...+...+.+.+|++.|..... +.|...
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 9999999999999999999998876 667654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-09 Score=109.05 Aligned_cols=254 Identities=18% Similarity=0.203 Sum_probs=169.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGL 173 (637)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 173 (637)
++-.+...|+.|+-+||.++|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556677799999999999999999999999888 9999988888888899999999988888887776
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHh----cCCCCCCHH-------------HHHHHHHHHHhcCCHHHHH
Q 006640 174 TPTTSTYNTLIKGYGIAGKPEE---SVKLLDLMSR----EGNVKPNLR-------------TYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~ 233 (637)
.|...+|+.|..+|...|++.. ..+.+..+.. .|.-.|... .-..++......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999998755 2222222211 110011111 1122333334455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 234 NVMHKMAASGMKPDVVTYNTIATAYAQNG-EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
+++..+....-. .+.. .+++-+.... .+++-........+ .+++.++..++..-..+|+++.|..++..|.+.
T Consensus 160 kll~~~Pvsa~~-~p~~--vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQ--VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-chHH--HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555544322100 0111 1233332222 22222222222222 478888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006640 313 GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGF 368 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 368 (637)
|++.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888887777777654 67777788888888888888888888877776666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-07 Score=88.63 Aligned_cols=416 Identities=13% Similarity=0.095 Sum_probs=224.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHH--h
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA--VINAFS--E 154 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~ 154 (637)
++.+..+|++++|.+...+++..+ +.+...+..-+-++.+.+.+++|+.+.+.-.. ..+++. +=.+|+ +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 577788999999999999999854 55778888888899999999999966553221 111222 244555 6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.+..++|+..++-... .+..+...-...+.+.|++++|+++|..+.+.+.-.-+...-..++.+-... .+ .
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H
Confidence 7899999998883322 2444667777888899999999999999987652111222222222221110 11 1
Q ss_pred HHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCC-------CCC--Ch-----hhHHHHHHHHHHcC
Q 006640 235 VMHKMAASGMKPDVVTYN---TIATAYAQNGEADQAEEVIVEMEHNG-------VQP--NG-----RTCGIIISGYCKEG 297 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~--~~-----~~~~~li~~~~~~g 297 (637)
+.+... ..| ..+|. .....+...|++.+|+++++...+.+ -.. +. ..-..|.-++-..|
T Consensus 163 ~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 122221 122 22332 24455677899999999988873211 000 00 11123444566789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCCH-h-HHHH------------HH------------------
Q 006640 298 KIKEALRFARTMKEYGVHPNLVI----FNLLIKGFVEIMDR-D-GVDE------------VL------------------ 341 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~-~-~a~~------------~~------------------ 341 (637)
+.++|..++...++.. ++|... -|.++.. ....++ + .+.. ..
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888765 334322 1222211 100000 0 0000 00
Q ss_pred -----------HHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 342 -----------ALMKEFRVNPDVITYSTIMNAWST--AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAE 408 (637)
Q Consensus 342 -----------~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 408 (637)
+.............+..++..+.+ ......+..++....+........+.-.++......|+++.|.
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 000000001111222333332221 1234555555555544422222344555566666777777777
Q ss_pred HHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHhcCCh
Q 006640 409 ELLM--------TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFET----LMWGYSEARQP 474 (637)
Q Consensus 409 ~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~----l~~~~~~~g~~ 474 (637)
+++. .+.+.+..| .+...+...+.+.++.+.|..++.+.... .-.+......+ +...=.+.|.-
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 7777 444433333 33445555566666666666666665431 01112222222 22233345777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 475 WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
++|..+++++.+.. .+|.....+++.+|++. +.+.|+.+-..++
T Consensus 475 ~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 475 EEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 77777777776532 24566677777777665 5666666655553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-08 Score=103.09 Aligned_cols=206 Identities=21% Similarity=0.228 Sum_probs=104.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CC-CCCH-H
Q 006640 289 IISGYCKEGKIKEALRFARTMKEY-----G-VHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-----RV-NPDV-I 354 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~ 354 (637)
+...|...+++++|..+|+++... | ..| -..+++.|..+|.+.|++++|...++...+. +. .+.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 455556666666666666655422 1 011 1234555555666666666665555443221 10 1111 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
.++.+...|...+++++|..+++...+. +........+--..+++.|...|.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i----------------------------~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKI----------------------------YLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHH----------------------------HHhhccccchHHHHHHHHHHHHHH
Confidence 2344445555566666666555543321 000000000011234555666666
Q ss_pred hcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCC-CCCH-HHHHHHHH
Q 006640 435 SDGSMDRAIEVFDKMCEH-----G-VSPN-LKTFETLMWGYSEARQPWRAEEILQIMK----AFGV-HPQK-STFLLLAE 501 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~-~p~~-~~~~~l~~ 501 (637)
..|++++|.++|++++.. | ..+. ...++.+...|.+.++..+|.++|.+.. ..|. .|+. .+|..|+.
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 666666666666655421 1 1111 2345666666777777766666665542 2232 2333 36777778
Q ss_pred HHHHcCCHHHHHHHHHHHhhc
Q 006640 502 ARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+|.+.|++++|.++.+.+...
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 888888888888877777643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-09 Score=104.44 Aligned_cols=231 Identities=15% Similarity=0.164 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCC-C
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEY-----G-VHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEF-----RVN-P 351 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 351 (637)
+...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++++|..+|+.+... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555555555555554432 1 012222 2334667788888999888888876542 111 1
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 006640 352 -DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTI 429 (637)
Q Consensus 352 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 429 (637)
-..+++.|..+|.+.|++++|...++...+ ++++.... ..|.+ ..++.+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~-~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGA-SHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhcc-ChHHHHHHHHHH
Confidence 122344444455555555555544444322 11110001 12222 234556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----C--CCCCC-HHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEH---GVSPN----LKTFETLMWGYSEARQPWRAEEILQIMKA----F--GVHPQ-KST 495 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~--g~~p~-~~~ 495 (637)
+..|...+++++|..+++...+. -+.++ ..++..|...|.+.|++++|.++++++.. . +..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 66777778888888877766531 12233 34799999999999999999999998852 1 12233 447
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcc----cc--------------ccccccccchHHHHHHHHh
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIKNKE----RT--------------NEMEAEEDIPVESLERLYH 544 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~~--------------~~~~~~~~~a~~~~e~l~~ 544 (637)
++.+...|.+.+++++|.++|.+..... ++ .+..++.+.|.+..++++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8899999999999999999999876432 11 1357889999999988874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-08 Score=98.44 Aligned_cols=307 Identities=16% Similarity=0.108 Sum_probs=148.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHH
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQ 260 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~ 260 (637)
-....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |+...|. .+..+...
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 3445566778888888888765543 33345555666777778888888888888887764 4444443 33333322
Q ss_pred c-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006640 261 N-----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI-KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 261 ~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
. .+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +++.+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 1 24556666666665542 3322222222222221122 23344455555555433 222222223322222
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 006640 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH--AYSILAKGYVREQEPEKAEELLM 412 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 412 (637)
.-...++......- ...+.+.... ....-+|... ++.-+...|-..|++++|+++++
T Consensus 160 ~~i~~l~~~~~~~l---------------~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 160 AIIESLVEEYVNSL---------------ESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHHHHHHHHHhh---------------cccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222222221110 0000000000 0000122222 22334455556666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006640 413 TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
+.++.. |-.+..|..-...+-+.|++.+|.+.++.....+.. |...-+-.+..+.++|++++|.+.+....+.+..|.
T Consensus 219 ~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 219 KAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 666552 222445555566666666666666666666654432 444444455555666666666666655544333332
Q ss_pred HH------H--HHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 493 KS------T--FLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 493 ~~------~--~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.. . ....+.+|.|.|++..|.+.+..+.
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 1 1233456666666666666666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-07 Score=90.75 Aligned_cols=401 Identities=14% Similarity=0.106 Sum_probs=234.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 006640 137 GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY 216 (637)
Q Consensus 137 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 216 (637)
.+..|..+|..|.-+...+|+++.+-+.|++....-+. ....|+.+...|...|.-..|+.+++.-.....-+++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45567888888888888888888888888887654332 56678888888888888888888887765543223334444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCC
Q 006640 217 NVLVRAWC-NEKNITEAWNVMHKMAAS--GM--KPDVVTYNTIATAYAQN-----------GEADQAEEVIVEMEHNGVQ 280 (637)
Q Consensus 217 ~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 280 (637)
...-..|. +.+..++++.+-.+.... +. ...+..|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 43334443 456777777777666651 11 11234444444444332 123466667777766543
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 360 (637)
.|..+.-.+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-. .|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 233333444556777888888888888888875567788888888888888888888888877654321 1111111111
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---------------------CC-------CCCHHHHHHHHHHHH-H--cCCHHHHHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKA---------------------GI-------KPDAHAYSILAKGYV-R--EQEPEKAEE 409 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~-~--~g~~~~A~~ 409 (637)
..-...++.+++......+... |. .....++..+..... + .-..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1112234444444333332210 00 000111111111111 0 0000000
Q ss_pred HHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006640 410 LLMTMIESGFH--PN------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 410 ~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
+...... |+ ...|......+...++.++|...+.++.... +-....|.-....+...|...+|.+.|
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111 22 2245556667778888888888888876642 224445666666777888889999888
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH--HHHHHhhccccc-----------cccccccchHHHHHHHHhhhc
Q 006640 482 QIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR--ILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 482 ~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~ 547 (637)
..... +.|+.. ....++.++.+.|+..-|.. ++..+....|.+ ...|+.+.|...+.-++++++
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 87766 667744 77788888888887666666 777776665543 124555555555555555555
Q ss_pred cC
Q 006640 548 TT 549 (637)
Q Consensus 548 ~~ 549 (637)
.+
T Consensus 786 S~ 787 (799)
T KOG4162|consen 786 SN 787 (799)
T ss_pred CC
Confidence 44
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=80.38 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777776677777777777776665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-07 Score=97.22 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 364 (637)
++..+...|...|++++|++++++.+++. +-.+..|..-...+-+.|++.+|.+.++....... .|-.+-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 33555666777788888888888777763 22355677777777788888888888877777653 36666666677777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 365 TAGFMDKCKEIFDDMGKAGIKPDAH------AY--SILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.|++++|.+++....+.+..|... .| .....+|.+.|++..|++-|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888877776654332211 11 3445677788888888777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-08 Score=96.36 Aligned_cols=218 Identities=11% Similarity=0.001 Sum_probs=140.5
Q ss_pred CChhHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 86 GKPQEAQAIFNNLIEGGH-KP--SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 162 (637)
+..+.++.-+.+++.... .| ....|..+...+...|+++.|...|.+.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455667777777775321 11 23457777777888888888888888888765 566788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
..|++..+..+. +..+|..+..++...|++++|++.|+...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888876543 56677778888888888888888888887754 33222222222334567788888888665433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GV---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
. .++...+ .+ .....|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+..
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222221 22 22334555443 244443321 11 0123467777888888888888888888887664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-08 Score=85.16 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006640 116 ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (637)
.|...|++..|...+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.....+. +..+.|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 3334444444444444444332 222333444444444444444444444444333222 23333444444444444444
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
|...|++.........-..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 444444443322222223334444444444444444444444443332 1112233333344444444444444444433
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 006640 276 HNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 276 ~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
..+. ++..+.-..|..--..|+.+.+-
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHH
Confidence 3332 33333333333333334433333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=78.73 Aligned_cols=49 Identities=33% Similarity=0.695 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
||..+||+++++|++.|++++|+++|++|.+.|+.||..||+.|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-07 Score=85.04 Aligned_cols=291 Identities=12% Similarity=0.074 Sum_probs=189.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA-VINAFS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~ 153 (637)
+++.+..+.+..++.+|++++..-.++. +.+....+.+..+|....++..|-..|+++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556778889999999999998887763 237777888889999999999999999998764 344433322 234555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLI--KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.+.+|+++...|... |+...-..-+ ....+.+++..+..++++....+ +..+.+...-...+.|++++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 778899999999888653 2222111112 22345788999999999887543 55666666666779999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------Chh--------------
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-------------NGR-------------- 284 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~-------------- 284 (637)
|.+-|+...+.+---....|+ +.-+..+.|+++.|++...++++.|++. |+.
T Consensus 163 AvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999998765333456676 4456677899999999999998876532 111
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006640 285 -TCGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 285 -~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 362 (637)
.+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.-. .+++.+..+-+..+...++ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 011122234556667777666666631 112345555555432221 2334444444444554443 345666666667
Q ss_pred HHHcCChHHHHHHHHH
Q 006640 363 WSTAGFMDKCKEIFDD 378 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~ 378 (637)
|++..-++.|-+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 7777666666666544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-07 Score=89.26 Aligned_cols=403 Identities=14% Similarity=0.113 Sum_probs=230.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 157 (637)
-++....|+++.|+.+|-+.+... ++|.+.|+.-..+|+..|++++|+.=-.+..+. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456778999999999999998865 458899999999999999999998876666664 455 4679999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHhcC--CCCCCHHHHHHHHHHHHhc------
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEES---VKLLDLMSREG--NVKPNLRTYNVLVRAWCNE------ 226 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~------ 226 (637)
+++|+..|.+-.+..+. +...++-+..++.......+. -.++..+.... .......+|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999887543 566777777777211000000 00111110000 0000011222222222110
Q ss_pred ----CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHH
Q 006640 227 ----KNITEAWNVMHKM-----AASG-------MKP------------D----------VVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 227 ----g~~~~A~~~~~~~-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~ 268 (637)
.++..|...+... ...| ..| | ..-...+.+...+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0111111111000 0000 011 0 011234555555666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHHcCCHhHHHHHH
Q 006640 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL-------LIKGFVEIMDRDGVDEVL 341 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~ 341 (637)
+-+....... .+..-++....+|...|.+.+....-.+..+.| .....-++. +..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 6666665543 344445555566666666666555555544443 111111221 223444555566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006640 342 ALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 342 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
.........|+.. .+....+++........-.+ |.. .-...-..-+.+.|++..|...|.++++.. |
T Consensus 322 ~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 6554433232211 22233334443333332221 221 111222555678889999999999988875 7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLL 499 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (637)
.|...|..-..+|.+.|.+..|+.-.+..++. .|+. ..|..=..++....++++|.+.|++..+ ..|+..-+..-
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHH
Confidence 78888888888899999999988888888775 3443 3566556667777788888888888776 44665444433
Q ss_pred HHHHH
Q 006640 500 AEARR 504 (637)
Q Consensus 500 ~~~~~ 504 (637)
+.-|.
T Consensus 466 ~~rc~ 470 (539)
T KOG0548|consen 466 YRRCV 470 (539)
T ss_pred HHHHH
Confidence 33333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-08 Score=93.16 Aligned_cols=94 Identities=12% Similarity=-0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+..+ .+..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444444444455555554444444432 23344444444444444555555444444444321 123344444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 006640 366 AGFMDKCKEIFDDMGK 381 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~ 381 (637)
.|++++|.+.|+...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555554444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-06 Score=85.98 Aligned_cols=380 Identities=15% Similarity=0.082 Sum_probs=245.0
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
+++|.+.|+.-..+|+..|++++|++=-.+-++ ..|+ +..|+....++.-.|++++|+..|.+-++.. +.+...++
T Consensus 32 ~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~ 108 (539)
T KOG0548|consen 32 SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKT 108 (539)
T ss_pred CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHH
Confidence 456899999999999999999999987776665 3554 5689999999999999999999999998875 66778888
Q ss_pred HHHHHHHhcCCHHHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHH----------hcCChHHHHHHHHHH----
Q 006640 147 AVINAFSESGNMEEAMDTF------WKMKES---GLTPTTSTYNTLIKGYG----------IAGKPEESVKLLDLM---- 203 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~------~~m~~~---~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m---- 203 (637)
-|..++.... .+.+.| ..+... ........|..++..+- ...++..|.-.+...
T Consensus 109 gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 109 GLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred hHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 8888872211 111111 111100 00001112333332221 111112222111110
Q ss_pred -HhcC------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 204 -SREG------NVKP------------N----------LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 204 -~~~~------~~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
...+ ...| | ..-.-.+.++..+..++..|++-+....... -+..-++..
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~ 263 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNI 263 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHH
Confidence 0000 0011 0 0123557777788889999999999888764 455666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGR-------TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKG 327 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (637)
..+|...|.+......-+...+.|.. ... .+..+..+|.+.++++.|+..|.+.......|+..
T Consensus 264 aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------- 334 (539)
T KOG0548|consen 264 AAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------- 334 (539)
T ss_pred HHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH--------
Confidence 78888888888777776665555431 111 22234457777888999999999876543333321
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 328 FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 407 (637)
.+....+++........-.++.. ..-...-...+.+.|++..|+..|.++++.. +.|...|.....+|.+.|.+..|
T Consensus 335 -s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 335 -SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred -HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHH
Confidence 12222344444444333322221 1112223566789999999999999999986 56899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 408 EELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
++-.+..++.+ ++....|..=..++....++++|++.|++..+.. |+..-+..-+.-|..
T Consensus 412 L~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 412 LKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 99988888874 5556667666777777889999999999999854 665555544555555
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-07 Score=83.78 Aligned_cols=413 Identities=10% Similarity=0.033 Sum_probs=268.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
+.-+..+.++..|+.+++.-...+-.-...+-.-+..++...|++++|...|..+.... .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 67778889999999999877643322221222334567788999999999999887765 67778888888777778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
.+|..+-....+ ++-....|.+.-.+.|+-++-..+-..+.. +...-.+|.+.....-.+.+|++++.+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999888776643 455556666777778887777666665543 335556677776677789999999999
Q ss_pred HHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006640 239 MAASGMKPDVVTYNT-IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 239 ~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
.+.. .|+-...|. +.-+|.+..-++-+.++++--.+. ++.+....|..+....+.=.-..|.+-...+.+.+...
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 9875 344444443 455678888889898888877665 22334555555444444322233444444444433111
Q ss_pred HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 318 LVIFNLLIKGFVEI-----MDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392 (637)
Q Consensus 318 ~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 392 (637)
...+.-+++. ..-+.|.+++--+.+.- | ..-..|+-.|.+.+++++|..+.+++.-. .|-.....
T Consensus 253 ----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--P--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--P--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ----chhHHHHHHcCeEEEeCCccHHHhchHHHhhC--h--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1122223332 23467777776665532 2 23345666788999999999988776432 23333333
Q ss_pred HHHHHH-----HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 393 ILAKGY-----VREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 393 ~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
.++.+- .....+.-|...|+..-+++..-|. .--.++.+.+.-..++++.+.++......-.. |...-..+..
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQ 401 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQ 401 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHH
Confidence 332221 1122345577777666555444333 23456777777777899999998888765333 4444446888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 006640 467 GYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+.+..|.+.+|.++|-.+....++ +..+|. .+.+.|.+.++.+-|..++-++
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999999999999776543344 344555 5668899999999999988765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=82.80 Aligned_cols=201 Identities=13% Similarity=0.035 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV 399 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (637)
+...+.-.|.+.|+...|..-++..++.. +.+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455667888888888888888888875 3466788888888889999999999999888764 346778888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006640 400 REQEPEKAEELLMTMIESGF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
..|++++|...|++...... .--..+|..++.+..+.|+.+.|...|++.++.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999998886422 223467888888888999999999999998886432 4557777888888889999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 479 EILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.+++.....+. ++.+.....+.+-.+.|+.+.|-++=..+....|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88887765444 7888888888888888888888887766655554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-07 Score=96.73 Aligned_cols=476 Identities=10% Similarity=-0.034 Sum_probs=278.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFW 166 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 166 (637)
+...|+..|-+.++..+ -=...|..|...|...-+...|...|+++.+.+ +.|...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36667776666655321 134578888888877778888888888888766 6677788888888888888888888744
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 167 KMKESGLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK 245 (637)
Q Consensus 167 ~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 245 (637)
...+..+. .-...|.-..-.|...++...|+.-|+...+.. |.|...|..++.+|...|++..|+++|.+.... .
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 43333211 112334445556777888888888888887764 567788888888888888888888888877664 3
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHHcCCHHH-------HHHHHHHHHH
Q 006640 246 PDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNG------VQPNGRTCGIIISGYCKEGKIKE-------ALRFARTMKE 311 (637)
Q Consensus 246 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~-------A~~~~~~~~~ 311 (637)
|+. ..-.-....-+..|.+.+|+..+..+.... ...-..++..+...+.-.|-..+ +++.|.-...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 222223344566788888888777664321 11112233333333333333333 3333333332
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHh--H----HHH-HHHHHHhCCCC--------------------CCHHHHHHHHHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRD--G----VDE-VLALMKEFRVN--------------------PDVITYSTIMNAWS 364 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~--~----a~~-~~~~~~~~~~~--------------------~~~~~~~~li~~~~ 364 (637)
+....+...|-.+-++|.-.-..+ - ... ++.+....+.- .+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 222233333433333322110000 0 000 11111111111 11223333333322
Q ss_pred H----c----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 365 T----A----GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 365 ~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
+ . .+...|+..+...++.. ..+...|+.|.-. ...|++.-|...|-+-.... +....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 2 1 12235666666665542 3466677776654 55678888888887766553 66778898888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK----AFGVHPQKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~g~~~eA 512 (637)
.+++.|...|.......+ .|...|..........|+.-++..+|..-. ..|--|+...|.|....-...|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 999999999998887543 256677777766777888888888876521 345556666777777777778887776
Q ss_pred HHHHHHHhh----------ccccc-----------cccccccchHHHHHHHH---hhhccCCCCC-CcccccccccccCC
Q 006640 513 KRILSKIKN----------KERTN-----------EMEAEEDIPVESLERLY---HKEATTASYP-NLLQIPNVVSSDQK 567 (637)
Q Consensus 513 ~~~~~~~~~----------~~~~~-----------~~~~~~~~a~~~~e~l~---~~~~~~~~y~-~~~~L~~~y~~~g~ 567 (637)
+...+++.. +.|+. +.......+...+.+++ +..-+-..|. +--..+.+|.+.|.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 666665531 11210 11223334444555554 3334444453 34456668888888
Q ss_pred Cchhh
Q 006640 568 GSAAA 572 (637)
Q Consensus 568 ~~~a~ 572 (637)
++.|.
T Consensus 1023 fe~A~ 1027 (1238)
T KOG1127|consen 1023 FESAK 1027 (1238)
T ss_pred hhhHh
Confidence 88554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-06 Score=86.98 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006640 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+.++...|+.+.|..++..+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 44445556666666666655543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-06 Score=87.50 Aligned_cols=199 Identities=10% Similarity=-0.018 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVT-YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
+..|..+...+...|+++.+...+........ .++... .......+...|++++|...+++..+.. |.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44555566666667777777666666554321 112211 1112233456677777777777776653 444444432 1
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 150 NAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 150 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+.. .+....+.+.++..... .+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 12222 33444444444431111 11122334445556667777777777777776653 4455666667777777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGM-KPDV--VTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777776665421 1221 234456666677777777777776664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-06 Score=91.37 Aligned_cols=487 Identities=11% Similarity=0.068 Sum_probs=255.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTL-----LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
|..+.+.+.+.|-...|++.|..+.. ++..++ .+.+ +..+...-.++.+.+.++.|+..++..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D--IKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH--HHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66677888889999999988776643 121111 1111 122333345667777777777766666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----------hc-
Q 006640 150 NAFSESGNMEEAMDTFWKMKES-----------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS-----------RE- 206 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~- 206 (637)
.-|...-..+...++|+..... ++.-|+.+.-..|.+-++.|++.+..++-++-. +.
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 5565555555555555554332 233455555566666677776666655543210 00
Q ss_pred ---C-----------CCCCCHHHH----------------------------------------------------HHHH
Q 006640 207 ---G-----------NVKPNLRTY----------------------------------------------------NVLV 220 (637)
Q Consensus 207 ---~-----------~~~~~~~~~----------------------------------------------------~~li 220 (637)
+ ++.+|.+.| .-|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 011111111 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHH---HHHH------HHHC-----------C-
Q 006640 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE-ADQAEE---VIVE------MEHN-----------G- 278 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~------~~~~-----------~- 278 (637)
.-.-+.+++.--...++.....|. -|..++|+|...|..+++ ++.-++ .|+. ..++ |
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 112233444444555666666664 378888888888776543 221111 1111 0111 1
Q ss_pred -------CCCChhhHHHHHHHHHHcCCHHHH-----------HHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHH
Q 006640 279 -------VQPNGRTCGIIISGYCKEGKIKEA-----------LRFARTMKEYGV--HPNLVIFNLLIKGFVEIMDRDGVD 338 (637)
Q Consensus 279 -------~~~~~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~ 338 (637)
+......|-...+.+.+..+.+-- .++.++....++ ..|+...+..+.++...+-..+.+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 000112233334444444443322 235556655443 235666677778888888888888
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHH---------------------------HHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 006640 339 EVLALMKEFRV--NPDVITYSTIMN---------------------------AWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 339 ~~~~~~~~~~~--~~~~~~~~~li~---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
++++.+.-.+. .-+...-+.|+- .+...+-+++|..+|+... .+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHH
Confidence 88887643211 111112222221 1222333445555554431 2333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
..+.|+. .-+.++.|.+.-++. ..+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++..+.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 3333332 234455554444443 34678999999999999999988877543 37778899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhccC
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
+.|.+++-.+++...++..-+|..+ +.++-+|.+.+++.|-++++.---..........-.+.+..-+-|++ -++
T Consensus 1145 ~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~---y~~ 1219 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLL---YSN 1219 (1666)
T ss_pred hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHH---HHH
Confidence 9999999988888777666666554 35777888999988888876321000000000011122221122221 111
Q ss_pred CCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhh
Q 006640 550 ASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWF 592 (637)
Q Consensus 550 ~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi 592 (637)
.+ ++..|+..+-..|.+..|...-+.......-|+.+.+.|
T Consensus 1220 vS--N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1220 VS--NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 11 345577777778888877654444333334344443333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-05 Score=73.53 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-HHHHH
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLR-TYNVL 219 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~l 219 (637)
++.-..-+...+...|++.+|+.-|...++.++. +-.++-.-...|...|+..-|+.-+.+..+. +||-. .-..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHh
Confidence 3444455566667777777777777777764211 1122333345677777777777777777763 46632 22233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVT----------------YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG 283 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 283 (637)
...+.+.|.+++|..-|+.+++.. |+..+ ....+..+...|+...|+.....+++..+ .|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chh
Confidence 445667777888877777777653 22111 11223334445566666666665555432 445
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 363 (637)
..+..-..+|...|.+..|+.=++...+.. ..+...+.-+-..+...|+.+.++...++-.+.+ ||...+-.. |
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~---Y 263 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF---Y 263 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH---H
Confidence 555555566666666666655555544332 2334444444444555555555555555544432 332211110 0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---IFTTIISGWCSDGSMD 440 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 440 (637)
-+ +.+..+.+.. +......++|.++++-.+...+.......+ .+..+-.++...|++.
T Consensus 264 Kk---lkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 264 KK---LKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HH---HHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 00 0000000000 111233455555555555555432111111 2233444455556666
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 441 RAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|++...+.++. .|| ..++.--..+|.-...+++|+.-|+...+
T Consensus 325 eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666552 233 44555555566555566666666665554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-05 Score=79.92 Aligned_cols=219 Identities=11% Similarity=0.032 Sum_probs=136.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
++-+...+++++|.....+++..+ +.|...+..=+-+..+.+.+++|+.+.+.-... ..+.+-+---..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455667889999999999999876 666777777777888999999999665543321 11111111123334478999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.+- +...-..++.. +....+. +.+
T Consensus 96 Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHH
Confidence 99999998332 2355577777788899999999999999998765321 11111122211 1111111 122
Q ss_pred HHHHCCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------CH-HHHHHHHHHHHHcCCHh
Q 006640 273 EMEHNGVQPNGRTCGI---IISGYCKEGKIKEALRFARTMKEYG-------VHP------NL-VIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~-------~~~------~~-~~~~~ll~~~~~~~~~~ 335 (637)
. ....| ..+|.. ....+...|++.+|++++....+.+ -.- .. ..-..+.-.+...|+..
T Consensus 166 ~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 166 S---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred h---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 2 11122 223333 3456677999999999999883221 011 11 12233445567889999
Q ss_pred HHHHHHHHHHhCCC
Q 006640 336 GVDEVLALMKEFRV 349 (637)
Q Consensus 336 ~a~~~~~~~~~~~~ 349 (637)
+|..++...++...
T Consensus 242 ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-05 Score=75.00 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=94.8
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.|+.+|+.|++-+..+ ..++++..++++... .+-.+..|..-|..-.+.++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3567899999999988777 999999999999863 3346778888999999999999999999998875 44577777
Q ss_pred HHHHHHHhc-CCHHH----HHHHHHHHH-HCCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHhc
Q 006640 147 AVINAFSES-GNMEE----AMDTFWKMK-ESGLTPT-TSTYNTLIKG---------YGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 147 ~li~~~~~~-g~~~~----A~~~~~~m~-~~~~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 206 (637)
.-+.---+. |.... ..+.|+-.. +.|..+- -..|+..+.. |..+.+++..++++.++...
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 766543332 33222 233444333 3443332 2346665554 34455778888888888753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-05 Score=74.79 Aligned_cols=318 Identities=12% Similarity=0.085 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006640 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTY-NTIA 255 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li 255 (637)
+.-..-+.+.+...|++..|+.-|....+.+ |.+-.++.--...|...|+...|+.-+.+.++. +||-..- ..-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3334456667778889999999998887643 333344555566788888888888888888775 5664322 1233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 006640 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
..+.+.|.+++|..=|+.+++... +..+ ...++.+.-..++-..+ ...+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchh
Confidence 456788899999998888887633 2111 11222222222222221 22233345567777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.+++....+++.. +.|...+..-..+|...|.+..|+.-++...+.. ..+...+--+-..+...|+.+.++...++..
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888877765 3477777777778888888888888777776653 3355566666677778888888888888877
Q ss_pred HCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHH
Q 006640 416 ESGFHPNVVI----FTTI---------ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF---ETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 416 ~~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~ 479 (637)
+. .||... |-.+ +......+++.++++..+...+..+....+.+ ..+-.++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 65 455431 1111 11244678888888888888876543233333 344456677889999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 480 ILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 480 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...+..+ +.|+ ..++..-..+|.-...+|+|+.-++++.+..+.
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 9988877 7777 668888889999999999999999999887654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-06 Score=86.03 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=117.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
.+-.....+.+|+.+++.+.... .-..-|..+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34445566777777777666542 233345566667777777777777775542 2344566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.|.++-++.. |.......|..-..-+-.+|++.+|.+++-.+. .|+. .+..|.+.|..++.+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7777665543 333344455555556666777777776654331 2332 3445667777777777666542
Q ss_pred hcccc---------ccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhh
Q 006640 521 NKERT---------NEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSW 591 (637)
Q Consensus 521 ~~~~~---------~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~sw 591 (637)
-...| .+..++...|++.+-++ ..-.+ --|+|..++.|++|-++-+.--..+..|...+-|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea---~d~ka-------avnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA---GDFKA-------AVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh---hhHHH-------HHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 11111 01223333332222111 11111 2378999999999999888887788888888989
Q ss_pred h
Q 006640 592 F 592 (637)
Q Consensus 592 i 592 (637)
.
T Consensus 948 a 948 (1636)
T KOG3616|consen 948 A 948 (1636)
T ss_pred H
Confidence 5
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-08 Score=92.75 Aligned_cols=254 Identities=13% Similarity=0.109 Sum_probs=130.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEA 302 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 302 (637)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666654444 221111112334445666677777665433 3332222 34444444444333332334444
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 303 LRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+.-+++....... .+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444333322212 12222222223344556666666655431 3455666667777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006640 382 AGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
. ..| .+...|..++.. .+.+.+|..+|+++.+. +++++.+.+.+..++...|++++|.+++++..+.+.. |
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 4 223 233334443332 23577777777776654 4567777777777777777777777777777654432 5
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHH
Q 006640 458 LKTFETLMWGYSEARQP-WRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 494 (637)
+.++..++.+..+.|+. +.+.+++.++.. ..|+..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 55677777777777776 445566666655 345543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-06 Score=86.38 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=15.7
Q ss_pred cccccccccccCCCchhhhhhhhccc
Q 006640 555 LLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 555 ~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
.+.|+.-+...|++++|.+-.....+
T Consensus 998 hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 998 HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 34556666677788777655544433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-08 Score=93.81 Aligned_cols=251 Identities=16% Similarity=0.166 Sum_probs=165.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006640 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGV 337 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 337 (637)
+.-.|++..++.-.+ ......+.+......+.++|...|+++.++. .+.... .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444688888876555 2222222234455567788889998876543 333333 56666666555544443455555
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 338 DEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
..-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544333322 23333334445667789999999887642 4677888889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006640 417 SGFHPNVVIFTTIISGWC----SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
. ..|.. ...+..++. -.+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++... ..|+
T Consensus 160 ~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~ 233 (290)
T PF04733_consen 160 I--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPN 233 (290)
T ss_dssp C--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CC
T ss_pred c--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccC
Confidence 5 34433 333444332 233699999999998765 457889999999999999999999999998765 3444
Q ss_pred -HHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcccc
Q 006640 493 -KSTFLLLAEARRATGLT-KEAKRILSKIKNKERT 525 (637)
Q Consensus 493 -~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~~~ 525 (637)
..+...++-+....|+. +.+.+++.++....|.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 55788888888888988 7788999998766553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-05 Score=91.59 Aligned_cols=265 Identities=13% Similarity=0.062 Sum_probs=113.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHH
Q 006640 222 AWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----GV-QPNGRTCGIIISG 292 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~ 292 (637)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666655442111111 22334444455566666666665554421 10 0011233344445
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006640 293 YCKEGKIKEALRFARTMKEY----GVH--P-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEF----RVNPDVITYSTIMN 361 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 361 (637)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+...... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 55566666666655554321 110 0 1122333334444556666665555554321 10011222333444
Q ss_pred HHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAG--IKPDAH--AY--SILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISG 432 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~ 432 (637)
.+...|+.+.|...+....... ...... .. ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4555666666666555543210 000000 00 00112233455666665555443321100000 112334445
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 433 WCSDGSMDRAIEVFDKMCEH----GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|+.++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666555431 221111 2344445555566666666666655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-07 Score=89.17 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=123.7
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (637)
..+.++|++.+|.-.|+..+... +-+..+|..|....+...+-..|+..++++++.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567777777777777776643 3366677777777777777677777777777664 455666677777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIK-----------GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+|.+.++.-+...++ |..+.. .+.....+....++|-++.......+|......|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 777777666543211 110100 1111112233344444444443233455555555555656666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+++|...|+..+... +-|..+||-|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 666666666655542 224455666666666656666666666655553 233 3444455555556666666655554
Q ss_pred HH
Q 006640 308 TM 309 (637)
Q Consensus 308 ~~ 309 (637)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 44
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-05 Score=89.66 Aligned_cols=337 Identities=12% Similarity=0.022 Sum_probs=211.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM------KPD--VVTYNTIATA 257 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~ 257 (637)
.....|+++.+...++.+.... ...+..........+...|++++|..++......-- .+. ......+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445677777777766653211 011222233445556678999999999987754310 111 1122233455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 006640 258 YAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALRFARTMKEYGV---HPN--LVIFNLLIKGF 328 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~ 328 (637)
+...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67889999999999987663211121 2345566677889999999999988864311 111 23445566778
Q ss_pred HHcCCHhHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 006640 329 VEIMDRDGVDEVLALMKE----FRVN--P-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKP--DAHAYSILAKG 397 (637)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~ 397 (637)
...|++++|...+.+... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998877544 2211 1 2233445566677789999999999887542 1112 23444556677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTMIESGF-HPNVVIF-----TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL---KTFETLMWGY 468 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~ 468 (637)
+...|+++.|...+.+...... ......+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8899999999999988754210 1111111 11224455689999999998776542111111 1245667788
Q ss_pred HhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 469 SEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...|+.++|...+++... .|..++ ..+...+..++.+.|+.++|...+.++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988753 343332 2356677788999999999999999987653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-05 Score=73.48 Aligned_cols=292 Identities=10% Similarity=0.092 Sum_probs=193.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYN-TLIKGYG 188 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~ 188 (637)
+.+++..+.+..++..|++++..-.++. +.+....+.|..+|-...++..|-..++++...- |.-.-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5566666677788999999988877765 5577888888899999999999999999998764 3333333 2345566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA--WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
+.+.+..|+++...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999888652 232222222222 235678888888888776433 55555666666778999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CHH--------HHHHHH
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP-------------NLV--------IFNLLI 325 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------~~~~ll 325 (637)
|.+-|+...+-+--.....|+..+ +..+.|+++.|+++..++++.|++. |+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887743323345666544 4557789999999999998876421 211 112222
Q ss_pred -------HHHHHcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 326 -------KGFVEIMDRDGVDEVLALMKE-FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 326 -------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
..+.+.++++.|.+.+..|.. ..-..|++|...+.-. -..+++-....-+.-++..++ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 234466777777777777632 2223456665544322 123445555555555555543 346777777788
Q ss_pred HHHcCCHHHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTM 414 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~ 414 (637)
|||+.-++.|-+++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 88888888888777653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9e-06 Score=85.54 Aligned_cols=441 Identities=13% Similarity=-0.008 Sum_probs=276.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006640 122 RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLD 201 (637)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (637)
+...+...|-+..+.. +.=...|..|...|....+...|.+.|+...+.+.. +...+-.....|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4666777666666643 333568999999999999999999999999987654 77889999999999999999999955
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 202 LMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
...+......-...|.-..-.|.+.++...|..-|+...+.. +.|...|..+..+|...|.+..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 444432111123445556667889999999999999998765 4478899999999999999999999999887653 3
Q ss_pred C-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHHcCCHhHH-------HHHHHHHHhC
Q 006640 282 N-GRTCGIIISGYCKEGKIKEALRFARTMKEYG-----VHP-NLVIFNLLIKGFVEIMDRDGV-------DEVLALMKEF 347 (637)
Q Consensus 282 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a-------~~~~~~~~~~ 347 (637)
+ ...--....+-+..|.+.+|+..+....... ... -..++..+...+.-.|-...+ ++.|.-...+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 2222233445667899999998887775431 011 112222222222222222222 2222222222
Q ss_pred CCCCCHHHHHHHHHHHH-----------------------HcCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 348 RVNPDVITYSTIMNAWS-----------------------TAGFM---D---KCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 348 ~~~~~~~~~~~li~~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
....+...|-.+-++|. ..+.. + .|.+.+-.-.+ ...+..+|..|+..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 21222223322222221 11111 1 01111111111 112344555555554
Q ss_pred HH----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 399 VR----E----QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 399 ~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+ + .+...|+..+++.++.. ..+..+|+.|.-. ...|++.-|.-.|-+-..... ....+|..+.-.|..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEe
Confidence 43 1 23357888888887763 5677888888766 667888888888877766532 366789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-------------------c----
Q 006640 471 ARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT-------------------N---- 526 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-------------------~---- 526 (637)
..+++.|...|.+.+. +.|+.. -|..........|+.-++..+|.---+...+ +
T Consensus 863 n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred cccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 9999999999998876 556543 5666666667778777777777652111000 0
Q ss_pred ---cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhh
Q 006640 527 ---EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKG 576 (637)
Q Consensus 527 ---~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~ 576 (637)
...++..-|..++++.+...|+... +|...+...-..+.+.+|.....
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~f--Ay~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCF--AYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhH--HHHHHHhHHHHHHHHHHHHHHHH
Confidence 0112233444567788877777654 34555666666777777665543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-07 Score=87.82 Aligned_cols=249 Identities=9% Similarity=0.073 Sum_probs=121.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 188 GIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
.+.|++.+|.-.|+...+.. |.+...|-.|.......++-..|+..+++.++.. +-+....-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 35555555555555555543 3445555555555555555555555555555542 22344444555555555555555
Q ss_pred HHHHHHHHHCCCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006640 268 EEVIVEMEHNGVQ--------PNGRTCGIIISGYCKEGKIKEALRFARTM-KEYGVHPNLVIFNLLIKGFVEIMDRDGVD 338 (637)
Q Consensus 268 ~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 338 (637)
...++.-+...++ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555544332110 00000000 0111112222333333333 23333355555555555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
..|+..+... +.|..+||.|...++...+.++|+..|++.++. .|. +.+...|.-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 6666665544 235556666666666666666666666666654 222 333444555566666666666665544321
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 418 ---------GFHPNVVIFTTIISGWCSDGSMDRAIE 444 (637)
Q Consensus 418 ---------~~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (637)
...++..+|..|=.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 011233456555555555555554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00017 Score=74.67 Aligned_cols=393 Identities=15% Similarity=0.127 Sum_probs=229.1
Q ss_pred hhHHHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------CCC
Q 006640 72 VRSMTKLMN--SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-G--------MDP 140 (637)
Q Consensus 72 ~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~~ 140 (637)
..+-..+++ .|..-|+.+.|.+-.+-+. +...|..+.+.|.+..+++-|.-.+-.|... | -.+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 334444443 3556788888877666553 4567899999998888877776666555421 0 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 220 (637)
+ ..-..+.-.....|.+++|..+|.+-.+ |..|=+.|-..|.+++|+++-+.--+ + .=..||....
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYA 865 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHH
Confidence 2 2223333345577899999999988775 45566778888999999888764322 1 1234666666
Q ss_pred HHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 221 RAWCNEKNITEAWNVMHKMA----------ASG---------MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
.-+-..++.+.|++.|++.- ... -..|...|..........|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 66666777888877776531 111 112444555555555667788888877766543
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC------C--CCCH
Q 006640 282 NGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR------V--NPDV 353 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~--~~~~ 353 (637)
|-+++...|-.|+.++|-++-++- -|......+...|...|+..+|...|....... . ..+.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455666667778888887765543 356666777888888888888888776643210 0 0011
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHH--CCCCCCH
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT--------MIE--SGFHPNV 423 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~--~~~~~~~ 423 (637)
..+|..+ .+...+.-.|-..|++. |. -+.--+..|-+.|.+.+|+++--+ ++. ..-..|+
T Consensus 1011 ~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1011 RLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 1111110 01111222233333332 11 112234457777777777665321 122 2224567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH----HHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK----STFLL 498 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~----~~~~~ 498 (637)
...+.-..-++.+.++++|..++-...+ |..-+..|...| +.-..++-+.|. ..+-.|+. .....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 7777777788888888888888766654 223344444333 223333334442 22233333 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006640 499 LAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 499 l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+.+.|.++|.+..|.+-|-++
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhh
Confidence 778899999888887766555
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00039 Score=73.64 Aligned_cols=320 Identities=12% Similarity=0.159 Sum_probs=172.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
|+...+..+.++...+-+.+..+++++..-.+ +..+...-|.|+-...+. +.....+..+++-..+. ..+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PDI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hhH
Confidence 44555555666666666666666666654321 112223334444333332 33344444444433221 123
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
.......+-+++|..+|++.. .+....+.|+. .-+.++.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 344455566667777766542 24444444443 2344555555544432 34566677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006640 264 ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
..+|.+-|-+. .|+..|..+++...+.|.+++-.+++...++..-.|.+ =+.++-+|++.++..+.++.+
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh--
Confidence 77666655332 35566667777777777777777766666555433333 245666666666655544433
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006640 344 MKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV 423 (637)
Q Consensus 344 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 423 (637)
..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|++..|.+.-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 1355555666666666666666666655433 23555666666666666666555443 245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+|-.+-.+|...+.+.-| +|.-..+.....-+..|+.-|-..|-++|-+.+++.
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 6666666666655444333 222222223344455566666666666666655544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-05 Score=74.99 Aligned_cols=145 Identities=9% Similarity=0.025 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
++..+-..+...++.++|+.+.++++... +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44444455555667777777777776632 224445655555555555 4566666666666554 44555555554444
Q ss_pred HhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006640 153 SESGNM--EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 153 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
.+.|.. ++++.+++++.+..+. +..+|+...-++...|+++++++.++++.+.+ +.|..+|+.....+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVI 186 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHH
Confidence 444442 4455555555555433 45555555555555556666666666655543 34445555444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-05 Score=74.97 Aligned_cols=236 Identities=9% Similarity=0.038 Sum_probs=177.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 006640 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDT 164 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~ 164 (637)
+++.+|...|+.+.. ..+..++|+.++.++++.. +-+..+|+....++...| ++++++..
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 456666666666543 3467788999999998875 556678887777777877 68999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKP--EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
++++.+..++ +..+|+...-.+.+.|+. ++++.+++++.+.. +.|..+|+...-++...|+++++++.++++++.
T Consensus 95 ~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 95 AEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999987655 666788766666667763 67899999998875 678999999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 006640 243 GMKPDVVTYNTIATAYAQN---GE----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE----GKIKEALRFARTMKE 311 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~ 311 (637)
+. .|...|+.....+.+. |. .+.......+++...+ .|...|+.+...+... +...+|...+.+...
T Consensus 172 d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 172 DV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred CC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 64 3667777666555544 22 2467777767776643 5788899888888773 445678888888776
Q ss_pred cCCCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHHh
Q 006640 312 YGVHPNLVIFNLLIKGFVEIM------------------DRDGVDEVLALMKE 346 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~------------------~~~~a~~~~~~~~~ 346 (637)
.+ +.+......++..|+... ..+.|..+++.+.+
T Consensus 250 ~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred cc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 54 557778888888887632 23678899888843
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00013 Score=75.47 Aligned_cols=299 Identities=13% Similarity=0.125 Sum_probs=187.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhC-C--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEG-G--------HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP 140 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 140 (637)
.+-..|..+.+++.+..+++-|.-.+-.|... | -.|+ .+=..+.......|-+++|+.+|++..+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 45678999999999999888887766655321 1 1121 1111222223467889999999998876
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------HhcCCCC
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLM----------SREGNVK 210 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~~~~~ 210 (637)
|..|=..|-..|.+++|.++-+.--+.. =..||.....-+-..++.+.|++.|++. .... |
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~--p 899 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY--P 899 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC--h
Confidence 3445566778899999998876543321 2346666666677778888888888753 2211 2
Q ss_pred C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006640 211 P----------NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280 (637)
Q Consensus 211 ~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 280 (637)
+ |...|.-.....-..|+.+.|+.+|....+ |-++++..+-.|+.++|-++-++-
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------ 964 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------ 964 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------
Confidence 2 222333333444457888888888877653 556888888899999998887653
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh---------------HHHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD---------------GVDEVLALMK 345 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---------------~a~~~~~~~~ 345 (637)
.|......|.+.|-..|++.+|..+|.+... +...|..|-.++-.+ .|-..|++
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe-- 1033 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE-- 1033 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH--
Confidence 3667778899999999999999999987752 333333332222111 12222222
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 346 EFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD--------MGK--AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 346 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.|.. +...+..|-+.|.+.+|+++--+ ++. .....|+...+.-.+.++...++++|..++-...
T Consensus 1034 -~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1034 -LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1211 12233456677777776654211 111 2234467777777777777888888877765443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-05 Score=85.51 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-----DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC 286 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 286 (637)
+...|-..+....+.++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3455666666666666666666666666532 111 12345555555555555566666666665531 123455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 006640 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWST 365 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 365 (637)
..|...|.+.+++++|.++++.|.+.- .-....|...+..+.+..+-+.|..++....+.-++ -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 566666666666666666666665431 234455666666666655555566666555443211 122233333344445
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
.|+.+.++.+|+..+... +.-...|+.++++-.++|+.+.++.+|+++...++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666665555432 2344556666666666666666666666655554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-06 Score=85.69 Aligned_cols=222 Identities=13% Similarity=0.122 Sum_probs=177.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 280 QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 280 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
+|-...-..+...+...|-...|+.+|+++. .|...+..|...|+...|..+..+..+ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333444567888999999999999998775 577788899999999999999888877 36899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
.+......-+++|.++.+..... +-..+.......++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 98887777788898888875432 22223333345799999999999887764 66778999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+.|.+.|..-... .|| ...|+.+-.+|.+.|+..+|...+++..+.+.. +...|....-+....|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999998874 455 458999999999999999999999999887744 444566666677899999999999999
Q ss_pred Hhhcc
Q 006640 519 IKNKE 523 (637)
Q Consensus 519 ~~~~~ 523 (637)
+....
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 86543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-06 Score=83.78 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 246 PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
|-...-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..+. +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33344456778888999999999999876 44677889999999999999999988874 78999999998
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPE 405 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (637)
+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8877777778888877764332 11122222234789999999999877754 446788888888889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 406 KAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|.+.|....... |.+...||.+-.+|.+.|+-.+|...+++..+.+. -+...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999988763 55678999999999999999999999999998773 356677788888889999999999998885
Q ss_pred H
Q 006640 486 A 486 (637)
Q Consensus 486 ~ 486 (637)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 3
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-05 Score=83.20 Aligned_cols=223 Identities=12% Similarity=0.081 Sum_probs=169.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEY-GVH---PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITY 356 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (637)
.....|-..+....+.++.++|++++++++.. +++ --...|.++++.-..-|.-+...++|+++.+.. .....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34667888888888899999999999888643 111 123478888887777787788889999887753 234567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 006640 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISGWC 434 (637)
Q Consensus 357 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 434 (637)
..|...|.+.+.+++|.++++.|.+. +.....+|...++.+.++.+-+.|..++.++.+.- |. ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 88899999999999999999999875 34577889999999999999999999999988752 22 2344555666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC
Q 006640 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS--TFLLLAEARRATGL 508 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~ 508 (637)
+.|+.+.+..+|+......++ ....|+.++..-.++|..+.++.+|++....++.|... .|...+..-...|+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 899999999999998876432 56689999999999999999999999998877776533 44445444444444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.4e-06 Score=72.99 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
|... ..+-..+...|+-+....+........ +.|......++....+.|++..|...|.+.....+ +|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 555677777788887777776654332 56677777788888999999999999999887654 48889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|.+.|++++|..-|.+..+.. +-+....|.|.-.+.-.|+.+.|..++......+ .-|..+-..+.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999999888753 4556778888888889999999999998887764 336777777888888999999
Q ss_pred HHHHHHHHHHH
Q 006640 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|..+...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99988766543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-05 Score=71.02 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=121.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 357 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
..+-..+...|+-+....+....... .+.|......++....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55566677777777777777765433 24566677778888888999999999999888765 78888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|+.++|..-|.+..+.... ++..++.+.-.+.-.|+.+.|..++......+.. |...-..+.-+.+..|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999998888885332 5667788888888889999999888887653322 5556667788888889999888876
Q ss_pred HH
Q 006640 517 SK 518 (637)
Q Consensus 517 ~~ 518 (637)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.4e-05 Score=81.39 Aligned_cols=280 Identities=9% Similarity=0.082 Sum_probs=154.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006640 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 344566777777777777777777777765554 3332 3333333355555554444333 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGF 368 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 368 (637)
++.......++.-...+...+.+. ..+...+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222222333332233333334332 2334466667777777777777777777777766 34677777777777777 7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDK 448 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (637)
+++|++++.+.... |...+++..+.++|.++.... +.|. +.-..+.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~----------------d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDF----------------DFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccc----------------hHHHHHHHH
Confidence 77777777666543 555667777777777777652 2222 222333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 006640 449 MCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERTN 526 (637)
Q Consensus 449 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 526 (637)
+... |..--..++..+-..|....+++++..+++.+.+ +.|+ ......+++.|. +++.+ ...++.......-.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 3322 2222344555666677777888888888888877 3343 334555555554 22222 22222222111111
Q ss_pred cccccccchHHHHHHHHhhhccC
Q 006640 527 EMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 527 ~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
...++...+..-.|+.+..++.+
T Consensus 288 ~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 288 NNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred cCCccHHHHHHHHHHHeeecCCC
Confidence 12245566777778877666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-05 Score=71.29 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=62.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW-CSDGS--MDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 442 (637)
.++.+++...++..++.. +.+...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555544443 3455555555555556666666666666555543 44555555555542 44444 3556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666655554322 444555555555556666666666655544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-05 Score=75.06 Aligned_cols=187 Identities=10% Similarity=-0.057 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 006640 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP--DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA--HAYS 392 (637)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 392 (637)
....+..+...+...|+++.|...++.+....+.. ....+..+..++...|++++|+..++.+.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44555666666666666666666666665543211 1134455566666666666666666666654321111 1344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 393 ILAKGYVRE--------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.+...+.+. |++++|.+.|+++.+.. +.+...+..+...... .. .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HH------HH--------HHHHHHH
Confidence 444444443 55666666666665542 2222222221111000 00 00 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFG-VHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...+.+.|++++|...+++..+.. -.| ....+..++.++...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567888899999999998886532 123 2457888899999999999999988887554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-05 Score=69.88 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=116.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
+..|...|+++......+.+.. |. ..|...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467888888776544433221 11 01223677788888888888775 78999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGY-SEARQ--PWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
++|+..|++..+.... +...+..+..++ ...|+ .++|.+++++..+ ..|+ ...+..+...+.+.|++++|...
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999986533 677888888864 67777 5999999999988 4454 56788899999999999999999
Q ss_pred HHHHhhccc
Q 006640 516 LSKIKNKER 524 (637)
Q Consensus 516 ~~~~~~~~~ 524 (637)
++++....+
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999987755
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-05 Score=72.60 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
.+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566777777777777777665422 112456667777777777777777777766543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-07 Score=56.40 Aligned_cols=32 Identities=47% Similarity=1.027 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-07 Score=56.58 Aligned_cols=31 Identities=48% Similarity=0.766 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006640 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
+.||..+|++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00022 Score=64.26 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 006640 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----E 401 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 401 (637)
..|+..+++++|.+...... +......=+..+.+..+++.|.+.++.|..- .+..+.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555544311 1222222223334445555555555555442 233444444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006640 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
+.+.+|.-+|++|.++ .+|++.+.+....++...|++++|..++++++..... ++.++..++..-.+.|+..+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 3345555555555543 2455555555555555555555555555555544322 44555555554445554433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-05 Score=83.58 Aligned_cols=226 Identities=16% Similarity=0.152 Sum_probs=142.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
+...+..|+..+...+++++|.++.+...+... .....|..+...+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 456777888888888888888888886665422 2234444444466666665555444 2 222
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
......++..+..+...+...+ -+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2233333333333444444432 344577778888888888888888888888876 55788888888888888 8888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 407 AEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|.+++.+.... +...+++..+.++|.++.+..+. |...|..+......+-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 88888887653 55666888888888888875422 3334444443332221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 487 FGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 487 ~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
|..--..++.-+...|....+++++..+++.+....+.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 11112234444556667777788888888777766553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=67.62 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555566666666666666666553 44556666666666666666666666666665432 245566666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 006640 471 ARQPWRAEEILQIMKA 486 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~ 486 (637)
.|+.++|+..|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666655
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0024 Score=63.52 Aligned_cols=415 Identities=11% Similarity=0.079 Sum_probs=250.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+-|..+|+.||+-+..+ ..+++++.++++... ++.....|..-|..-.+..+++..+++|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45999999999987666 899999999999865 46677889999999999999999999999977653 356677766
Q ss_pred HHHHHh-cCChHH----HHHHHHHHHhcCCCC-CCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006640 184 IKGYGI-AGKPEE----SVKLLDLMSREGNVK-PNLRTYNVLVRA---------WCNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 184 i~~~~~-~g~~~~----A~~~~~~m~~~~~~~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
++---+ .|+... ..+.|+-....-++. .+...|+..+.. |..+.+++...+++++++..-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654332 233332 233344433332222 233456555543 33455777888888888754222112
Q ss_pred HHHH------HHHHHH-------HHcCCHHHHHHHHHHHHH--CCCCCChhh---------------HHHHHHHHHHcC-
Q 006640 249 VTYN------TIATAY-------AQNGEADQAEEVIVEMEH--NGVQPNGRT---------------CGIIISGYCKEG- 297 (637)
Q Consensus 249 ~~~~------~li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~~~g- 297 (637)
..|+ .=|+.. -+...+-.|.++++++.. .|...+..+ |-.+|.---.++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222 111111 123346677777777643 233222221 322332111111
Q ss_pred -----CH--HHHHHHHHHHH-HcCCCCCHHHHHH-----HHHHHHHcCC-------HhHHHHHHHHHHhCCCCCCHHHHH
Q 006640 298 -----KI--KEALRFARTMK-EYGVHPNLVIFNL-----LIKGFVEIMD-------RDGVDEVLALMKEFRVNPDVITYS 357 (637)
Q Consensus 298 -----~~--~~A~~~~~~~~-~~~~~~~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 357 (637)
.. ....-.+++.. -.+..|++.-..+ .-+.+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111222221 1122232211100 1112222333 345556666555433333444444
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006640 358 TIMNAWSTAG---FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGW 433 (637)
Q Consensus 358 ~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~ 433 (637)
.+.+---..- ..+....++.+++..-...-.-+|..+++.-.+..-+..|+.+|.++.+.+..+ ++...++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 4433221122 255556666666553222234467777777778888999999999999987666 666777777755
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK--STFLLLAEARRATGLTKE 511 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~e 511 (637)
| .++...|.++|+--++. ..-++.--...+.-+.+.++-..+..+|++....++.|+. ++|..+++--...|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 57889999999987664 2224445557788889999999999999999877777764 589999999999999999
Q ss_pred HHHHHHHHhhccc
Q 006640 512 AKRILSKIKNKER 524 (637)
Q Consensus 512 A~~~~~~~~~~~~ 524 (637)
+.++-+++....+
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 9999888865544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-05 Score=66.92 Aligned_cols=95 Identities=6% Similarity=-0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+.....++...|++++|...|+.+.... +.+...+..+..++...|++++|...|++..+.++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 445566666666666666666666666666665432 55566666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 006640 190 AGKPEESVKLLDLMSRE 206 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~ 206 (637)
.|++++|+..|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00028 Score=75.87 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006640 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
.+.++..+-.|.......|.+++|..+++...+..+. +......++..+.+.+++++|+..+++..... |.+....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 3566888888888888999999999999999887543 56677888888999999999999999988865 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 006640 218 VLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 297 (637)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+..- +....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHHH------
Confidence 88888889999999999999998743 33578888888889999999999999988876532 33444444332
Q ss_pred CHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHH
Q 006640 298 KIKEALRFARTMKEYG----VHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~ 330 (637)
++..-..+++++.-.+ .+..+.+...++.-|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3333444555553322 22233444445544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00056 Score=61.78 Aligned_cols=236 Identities=14% Similarity=0.072 Sum_probs=109.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
++-+.-.|++..++..-..... .+.++..-..+-++|...|.+.....-. .. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~--~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS--SKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchh
Confidence 3445555777666654444332 2234455555566777666654433221 11 1122222222222222222332
Q ss_pred HHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 159 EEAM-DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 159 ~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+.-. .+.+.+......-+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 23333333322212222223334556666666666665541 133333333444555566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
+|.+.. +..|.+.|..++.+ .+.+..|.-+|++|-++ .+|+..+.+-...++...|++++|..+++......
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 665432 44455545444443 23455566666665442 23555555555555666666666666666655543
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 006640 314 VHPNLVIFNLLIKGFVEIM 332 (637)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~ 332 (637)
..++.+...++..-...|
T Consensus 238 -~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLG 255 (299)
T ss_pred -CCCHHHHHHHHHHHHHhC
Confidence 233444444433333333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-05 Score=65.65 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.....+...+.+.|++++|...|+.+...+ +.+...|..+...+...|++++|..+|++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444555555555555555555555443 3455555555555555555555555555555433 12344455555555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006640 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00014 Score=78.18 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 103 HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
+..++..+-.|..+..+.|.+++|..+++.+.+.. |-+......+...+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 55678899999999999999999999999999874 556778888999999999999999999999998755 7778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
+..++.+.|++++|..+|+++...+ +.+..++..+..++-..|+.++|...|++..+.- .+...-|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 9999999999999999999999854 4568999999999999999999999999998752 334444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.3e-05 Score=63.76 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.....+...+...|++++|...|+.+...++. +...|..+...+...|++++|...++...... +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 33444444444555555555555555444322 44445555555555555555555555544432 3344444445555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~ 241 (637)
+...|++++|...|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0021 Score=57.77 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006640 263 EADQAEEVIVEMEH---NG-VQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGV 337 (637)
Q Consensus 263 ~~~~A~~~~~~~~~---~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 337 (637)
+.++..+++.++.. .| ..++. ..|..++-+....|+.+.|..+++++...- +.+..+-..-.-.+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555554432 12 22332 233444555566777777777777776542 22222222222224456777778
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 338 DEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
+++++.+.+.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-|...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88887777765 345666666666666667766777777666654 4567888888888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 006640 418 GFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEH 452 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 452 (637)
. |-++..+..+...+...| +.+.|.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 555666666666544443 456677777777764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0017 Score=58.27 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 86 GKPQEAQAIFNNLIEG---G-HKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (637)
.++++.++++.+++.. | ..++.. .|..++-+....|+.+.|...+..+...= +.+..+--.=.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655431 2 223332 23333444445555555555555554431 2221111111112333455556
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|+++++.+.+.++. |.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 66666655555422 4444444444444455555555555555544 34555555555555555555555555555555
Q ss_pred HC
Q 006640 241 AS 242 (637)
Q Consensus 241 ~~ 242 (637)
-.
T Consensus 182 l~ 183 (289)
T KOG3060|consen 182 LI 183 (289)
T ss_pred Hc
Confidence 43
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00078 Score=66.28 Aligned_cols=239 Identities=18% Similarity=0.156 Sum_probs=146.8
Q ss_pred HHHHHHcC-ChhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 006640 79 MNSLIERG-KPQEAQAIFNNLI---EGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAF 152 (637)
Q Consensus 79 ~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~ 152 (637)
+..+.+.| ++....+.|+++. ..+-.|+.+..+.=+ -..+...+...-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 44556666 4555667888887 334344433221111 0112223333333332211 134555555555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
.....-..+-..+.+..+. . ....+.-..-.+...|++++|+..++.+.... |.|...+......+.+.++..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHH
Confidence 4333333333333222221 1 22233333344457888888888888887763 56677777778888888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 233 WNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 233 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.+++++.. .|+ ......+..++.+.|++.+|..+++...... +.|...|..|..+|...|+..++.....+..
T Consensus 360 ~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~- 435 (484)
T COG4783 360 IERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY- 435 (484)
T ss_pred HHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH-
Confidence 8888888876 444 5666678888888888888888888877654 3578888888888888888888887776664
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
...|+++.|...+....+.
T Consensus 436 -----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 -----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HhCCCHHHHHHHHHHHHHh
Confidence 3457777777777666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00091 Score=65.84 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=55.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006640 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
..|+++.|+..++.+++.- |-|+..+......+.+.++.++|.+.++++....+. ....+..+..+|.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 3445555555555544432 334444444445555555555555555555544221 13444445555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 199 LLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 199 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
+++...... |.|...|..|..+|...|+..++..
T Consensus 396 ~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555554442 4445555555555555555544443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00025 Score=60.79 Aligned_cols=126 Identities=18% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 464 (637)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+...+....|+. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4677777777777777653 3331 23333456677778888888888888775533322 244456
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
...+...|++++|+..++..... ......+...++++.+.|++++|...+++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888887653321 223345667778888888888888877654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00025 Score=70.36 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|++++++..... +.+...+......
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344455555666677777777777777653 23 34456666667777777777777776543 4456666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
+.+.++.+.|+.+.+++.... +.+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777776652 2233467777777777777777776666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00026 Score=70.33 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
....+++.+...++++.|..+++++.+.. |++ ...++..+...++-.+|.+++.+..+..+. +..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33445555666677777777777777653 443 334666666677777777777777654332 5556666667777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.++++.|+++.+++.... |.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777777653 33455777777777777777777777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00056 Score=58.61 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=9.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~ 170 (637)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333344444444444444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.031 Score=57.55 Aligned_cols=205 Identities=9% Similarity=0.044 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHCCC
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF----------SESGNMEEAMDTFWKMKESGL 173 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~~~ 173 (637)
.|.+..|..+.......-.++.|...|-+... -+.+.....|-... +--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 57888888888776666677777776655432 12221111111111 12377888888887776542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 174 TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
..|..+.+.|++-...++++.-.....-.--...|+.+...+.....+++|.++|..-.. . ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 235666677777666665543111100001135678888888888888888888765432 1 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
.+.++.+..++++-+.+...+ +.+....-.+.+++...|.-++|.+.|-+-. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 566666666666655544433 3456667778888888888888887764432 22 234556777777
Q ss_pred HhHHHHHHHH
Q 006640 334 RDGVDEVLAL 343 (637)
Q Consensus 334 ~~~a~~~~~~ 343 (637)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777776554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.04 Score=58.60 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=127.3
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 75 MTKLMNSL--IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 75 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 33344444 5788999999888877654332 7778888888888899999999999988875 46677777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK----------PEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
++.+++.+-.++--++-+. .+-+++.+=++++.+.+.-. ..-|.+.++.+.+.++.-.+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8888776544444444332 22245555555555544321 234566666666654211122222333344
Q ss_pred HHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 223 WCNEKNITEAWNVMH-KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
....|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 556788888888883 333332333445555667777778888888888777777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-05 Score=48.46 Aligned_cols=33 Identities=36% Similarity=0.900 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-05 Score=47.92 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS 106 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 106 (637)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677788888888888888888888877777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00043 Score=53.92 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ 473 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 473 (637)
+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.|+....... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3344444444444444444444432 22233444444444444444444444444444321 122334444444444444
Q ss_pred hhHHHHHHHHH
Q 006640 474 PWRAEEILQIM 484 (637)
Q Consensus 474 ~~~A~~~~~~m 484 (637)
+++|...++..
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.3e-05 Score=46.19 Aligned_cols=32 Identities=31% Similarity=0.679 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=5e-05 Score=46.29 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKP 105 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 105 (637)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.086 Score=56.24 Aligned_cols=225 Identities=12% Similarity=0.124 Sum_probs=152.7
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
.....+++..|++....+.+. .|+.. |..++.++ .+.|+.++|..+++.....+ ..|..+...+-..|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 345678999999999998875 35543 34444444 68899999999888877665 44888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----------C
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK----------N 228 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----------~ 228 (637)
++|..+|++..+.. |+......+..+|++.+.+.+-.+.--++-+. .|.+...+=++++.+.+.- -
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999998763 56777778888888888776644444444332 3444544444444443321 1
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVE-MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
..-|.+.++.+.+.+ ..-+..-...-...+...|++++|.+++.. ..+.-..-+...-+.-++.+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 234666677776554 111222122223345678899999999843 333323334445556778888999999999999
Q ss_pred HHHHHcC
Q 006640 307 RTMKEYG 313 (637)
Q Consensus 307 ~~~~~~~ 313 (637)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 9998876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0022 Score=54.03 Aligned_cols=93 Identities=10% Similarity=-0.036 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.-.+..-+...|++++|..+|+.+.... +-+...|-.|..++-..|++++|+..|..+....+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344445566677777777777666653 45566666677777777777777777777766553 256666666667777
Q ss_pred cCChhHHHHHHHHHH
Q 006640 471 ARQPWRAEEILQIMK 485 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~ 485 (637)
.|+.+.|.+.|+...
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777776654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.001 Score=58.68 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006640 386 PDAHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
.+..+|..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|+..+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 455666666666643 24555555555666666666666666666654432 2211 011111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhc---ccc----ccccccc
Q 006640 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT-KEAKRILSKIKNK---ERT----NEMEAEE 532 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~---~~~----~~~~~~~ 532 (637)
.-| -.+.+-|++++++|..+|+-||.+++..+++++++.+.. ....+++--|+.- +|. ..+....
T Consensus 113 -----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp~~lP~Dp~ 185 (228)
T PF06239_consen 113 -----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLPRPLPQDPL 185 (228)
T ss_pred -----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCHH
Confidence 001 123456899999999999999999999999999877642 2333333223222 221 1234556
Q ss_pred cchHHHHHHHH
Q 006640 533 DIPVESLERLY 543 (637)
Q Consensus 533 ~~a~~~~e~l~ 543 (637)
++|..+++++-
T Consensus 186 eLA~lal~rm~ 196 (228)
T PF06239_consen 186 ELAKLALRRMS 196 (228)
T ss_pred HHHHHHHHHhc
Confidence 77877787774
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=64.36 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=70.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQP 474 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~ 474 (637)
.-..+.+++++|+..|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+.. .|... +|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34566777888888888877764 567777777777788888888888777777763 34433 777777788888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH
Q 006640 475 WRAEEILQIMKAFGVHPQKSTFL 497 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~ 497 (637)
++|++.|++..+ +.|+.++|.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 888887777666 777777554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00089 Score=55.05 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH-P-QKSTFLLLAEAR 503 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~ 503 (637)
.++..+...|++++|...|+++...... .....+..+..++...|++++|...|+.+...... | ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444444444444444444432110 00123333444444555555555555444331100 0 122344444444
Q ss_pred HHcCCHHHHHHHHHHHhhc
Q 006640 504 RATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~~~ 522 (637)
...|+.++|...++++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4555555555555444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00064 Score=62.75 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 363 WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
..+.+++++|+..|.+.++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 344556666666666666553 3355555555666666666666666666655542 22334566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~ 462 (637)
++.|++.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666665 345544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=66.16 Aligned_cols=88 Identities=9% Similarity=-0.029 Sum_probs=47.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
.+...|+++.|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3444555555555555555543 2244555555555555555555555555555543 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 006640 442 AIEVFDKMCE 451 (637)
Q Consensus 442 A~~~~~~m~~ 451 (637)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00082 Score=52.29 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
+..+...+...|++++|...++.+.+.. +.+..++..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566677788888888888777653 2344667777777788888888888888877654 4455677777788888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006640 436 DGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (637)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.081 Score=51.86 Aligned_cols=435 Identities=10% Similarity=0.089 Sum_probs=217.3
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...+.|+.+|-.|+.-|-.+|.+++.++++++|..- .+--..+|..-+++-...+++.....+|.+.+... .+...|
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHH
Confidence 356789999999999999999999999999999752 22244577777887777889999999999998764 456677
Q ss_pred HHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHhcCC
Q 006640 146 NAVINAFSESGNM------EEAMDTFWKMKE-SGLTPT-TSTYNTLIKGYG---------IAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 146 ~~li~~~~~~g~~------~~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~ 208 (637)
..-+..--+.... ..-.++|+-... .++.|- ...|+..+..+- .+.+++..+..+.++....
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP- 191 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP- 191 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-
Confidence 7666544443311 122334444333 234333 234555444332 2335566677777776531
Q ss_pred CCCC-HHHHHH------HHHH-----HHh--cCCHHHHHHHHHHHHH--CCCC----CCHHHHH-----------HHHHH
Q 006640 209 VKPN-LRTYNV------LVRA-----WCN--EKNITEAWNVMHKMAA--SGMK----PDVVTYN-----------TIATA 257 (637)
Q Consensus 209 ~~~~-~~~~~~------li~~-----~~~--~g~~~~A~~~~~~~~~--~g~~----~~~~~~~-----------~li~~ 257 (637)
-.+ ...|+- =+.. ++. .--+..|...++++.. .|.. .+..+++ ..|..
T Consensus 192 -~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 192 -MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 011 112211 1111 110 1113345555555432 2221 1122222 22222
Q ss_pred HHHc-----CC-H-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 006640 258 YAQN-----GE-A-DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI-KGFV 329 (637)
Q Consensus 258 ~~~~-----g~-~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~ 329 (637)
-... |+ . ....-+|++.... +.....+|----..+...++-+.|++........ .|+ .+..+ ..|.
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~ye 344 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYE 344 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHh
Confidence 1111 11 1 1222234443332 1233444544444555667777777665544322 222 22222 2222
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST---AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
-..+.+.....|+..... ...--..+.+=+. -|+++.-.+++-.-. ..-..+|..+++.-.+..-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred hcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHH
Confidence 233333333333322110 0000000000000 122322222111111 1234455666666666666677
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHH
Q 006640 407 AEELLMTMIESG-FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF-ETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
|..+|-+..+.+ +.+++.++++++.-++ .|+...|..+|+--... -||...| .-.+.-+..-++-..|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 777777777665 4556666666666443 45666777777655443 2343333 23444555666666777777644
Q ss_pred HHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 485 KAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 485 ~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
... +..+ ..+|..+++--..-|++..+..+=+++.+..|
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 311 1112 34677777777777777777766666665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0045 Score=54.80 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
..+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555566666677777776666655322221 3456666666667777777777776666542 334555555666
Q ss_pred HHHhcCCHHHH
Q 006640 432 GWCSDGSMDRA 442 (637)
Q Consensus 432 ~~~~~g~~~~A 442 (637)
.+...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 66665554333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0043 Score=54.91 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
....+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..++++.+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677788888899999999999999886532222 467888899999999999999999999885322 45567777
Q ss_pred HHHHHhcCCh
Q 006640 465 MWGYSEARQP 474 (637)
Q Consensus 465 ~~~~~~~g~~ 474 (637)
..++...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 7788777764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=63.11 Aligned_cols=129 Identities=10% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR-EQEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
+|..++....+.+..+.|+.+|.+..+.+ ..+..+|...+.+-.. .++.+.|.++|+...+. ++.+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2234445444444333 44455567777666654 455666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNL---KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+....+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777777777666653 22222 2566666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0033 Score=51.60 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=8.5
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006640 79 MNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~ 99 (637)
+..+.+.|++++|...|+.+.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=65.62 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 006640 313 GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF--RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+.+.+......+++.+....+.+.+..++-..... ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777776554 2222234455788888888888888888888778888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
++.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877666566666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0024 Score=63.80 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 44455666666666666666653 44556666666666666666666666666666432 14445666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHH
Q 006640 476 RAEEILQIMKAFGVHPQKST 495 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~ 495 (637)
+|+..|++..+ +.|+...
T Consensus 88 eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH--hCCCCHH
Confidence 66666666655 3444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0001 Score=56.31 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 006640 436 DGSMDRAIEVFDKMCEHGVS-PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~ 513 (637)
.|+++.|+.+|+++.+.... |+...+..+..+|.+.|++++|..++++ .+ ..|+. .....++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35556666666666553221 1233344455566666666666666655 22 22222 22223355566666666666
Q ss_pred HHHHH
Q 006640 514 RILSK 518 (637)
Q Consensus 514 ~~~~~ 518 (637)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0053 Score=64.09 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 006640 349 VNPDVITYSTIMNAWSTAG-----FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE--------QEPEKAEELLMTMI 415 (637)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 415 (637)
.+.+...|...+.+..... ..+.|+.+|++.++.. +.....+..+..+|... .++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666666544322 2556777777776653 12234444433333221 11223333333333
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 416 ES-GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 416 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.. ..+.+...|..+.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 22 123445566666555556677777777777776643 5666666777777777777777777766655 445444
Q ss_pred HH
Q 006640 495 TF 496 (637)
Q Consensus 495 ~~ 496 (637)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0029 Score=53.33 Aligned_cols=99 Identities=9% Similarity=-0.096 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEA 502 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 502 (637)
....-.+..-+...|++++|..+|+-+....+. +..-|..|..+|-..|++.+|+..|.......+. +...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556666788999999999999999886532 5667889999999999999999999998874432 45678889999
Q ss_pred HHHcCCHHHHHHHHHHHhhcc
Q 006640 503 RRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+...|+.++|++.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987663
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.015 Score=56.12 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG----GHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...|....+.|-..|++++|...|.+.... +.+. -...|.....++. ..++++|...+.+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~-------------- 99 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEK-------------- 99 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHH--------------
Confidence 445666677777777777777777665431 1000 0111222222221 2244444333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIA-GKPEESVKLLDLMSRE----GNVKPNLRTYNVLVR 221 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~ 221 (637)
.+..|...|++..|-+++..+ ...|... |++++|++.|.+.... +....-..++..+..
T Consensus 100 -A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 -AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 334455566655555444443 3344444 6677777766665432 100001234455666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 222 AWCNEKNITEAWNVMHKMAASGMKP-----DVV-TYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.+.+.|++++|.++|++....-... +.. .+...+-++...|++..|.+.+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777777777777665432211 111 1222333555566777777777666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=43.51 Aligned_cols=29 Identities=45% Similarity=0.968 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=64.85 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=101.8
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH
Q 006640 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT 355 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (637)
+.+.+......+++.+....+++++..++.+..... ...-..|..+++..|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334566677778888888888999999998887652 222344667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877667777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0035 Score=60.26 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|..+|+...+. ++.+...|...+..+...++.+.|..+|++..
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44444444433 23334444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.013 Score=56.58 Aligned_cols=275 Identities=12% Similarity=0.002 Sum_probs=132.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
....+.+..++.+|+..+...++.... +..-|..-+..+...|++++|.--.+.-.+... .........-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 445566666677777777666665322 233344444445555666665544443332210 011223333344444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHcCChHHHHHHH
Q 006640 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-RVNPDVITYSTIM-NAWSTAGFMDKCKEIF 376 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li-~~~~~~g~~~~a~~~~ 376 (637)
..+|...++.-. .+ ....++..++.+... .-+|...++..+- ..+.-.|+.+.|.++-
T Consensus 133 ~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443110 00 001111111111111 1112233333332 2344566677776666
Q ss_pred HHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCCHHH
Q 006640 377 DDMGKAGIKPDAHAYSILAKG--YVREQEPEKAEELLMTMIESGFHPNVVI-------------FTTIISGWCSDGSMDR 441 (637)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~ 441 (637)
..+.+.. ....+..++++ +--.++.+.|...|++.++. .|+... |..=..-..+.|++..
T Consensus 193 ~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 6665542 11222222222 23456666677777666654 233321 1111223446677777
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 442 AIEVFDKMCEH---GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 442 A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--++..+ +.|.- ..|..-..++...++|++|.+-++
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777653 3344555666666667777777777776665544 33321 133333445555677777777777
Q ss_pred HHhhc
Q 006640 518 KIKNK 522 (637)
Q Consensus 518 ~~~~~ 522 (637)
++...
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 76543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0026 Score=56.10 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
...+..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3445556666666777777777777766542111 124666677777777777777777777765421 1233455555
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 006640 466 WGYS-------EARQPWRAEEILQ 482 (637)
Q Consensus 466 ~~~~-------~~g~~~~A~~~~~ 482 (637)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5555554444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0022 Score=50.04 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQK--------RFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
-...|..+...+++..-..+|+.+.+.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777899999999999998888 889999999888776542 123344455555555555555555
Q ss_pred HHHHHHH
Q 006640 146 NAVINAF 152 (637)
Q Consensus 146 ~~li~~~ 152 (637)
+.++..+
T Consensus 108 nivl~~L 114 (120)
T PF08579_consen 108 NIVLGSL 114 (120)
T ss_pred HHHHHHH
Confidence 5555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0037 Score=55.13 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 353 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...+..+...+...|++++|...|+........+ ...++..+...|...|++++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456667777778888888888888887653222 23577888888888899999999888888753 44456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 006640 431 SGWC-------SDGSMDRAIEVFDKM 449 (637)
Q Consensus 431 ~~~~-------~~g~~~~A~~~~~~m 449 (637)
..+. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 667777555555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.19 Score=51.99 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=127.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHcCCC
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLL----------AALTIQKRFNSIHSIMSQVEENGMD 139 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll----------~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (637)
|.+..|..|.......-.++-|...|-+... -|.+.....|- ..-+-.|++++|.++|-.|.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 5567787777777766677777776665532 22222111111 11223478999999988776543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 006640 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT 215 (637)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 215 (637)
..|..+.+.|++-...++++. -|...| ..+|+.+...++....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 245667778888766665543 111112 346888888888888888888888754321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 006640 216 YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
...+.++.+..++++-+.+-..+ +-|....-.+..++...|.-++|.+.|-+. +. | -..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHH
Confidence 23455666666666655554444 345667777889999999999998887443 21 2 234567788
Q ss_pred cCCHHHHHHHHHHHH
Q 006640 296 EGKIKEALRFARTMK 310 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~ 310 (637)
.+++.+|.++-+...
T Consensus 891 LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888888766543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.01 Score=61.98 Aligned_cols=140 Identities=12% Similarity=0.048 Sum_probs=100.3
Q ss_pred CCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 006640 382 AGIKPDAHAYSILAKGYVR--EQ---EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD--------GSMDRAIEVFDK 448 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~ 448 (637)
...+.+...|...+.+... .+ ..+.|..+|++.++.. |.....|..+..++... ++...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446788889888887543 33 3778999999999874 44455666555544332 123344455555
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 449 MCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 449 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.... ....+...|..+.......|++++|...++++.+ +.|+...|..++.++...|+.++|.+.++++....|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4443 1334567788887777778999999999999988 557888999999999999999999999888765544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.12 Score=50.21 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (637)
.........+.+.+..++.+|+..+...++.. +.++.-|..-+..+...+++++++--.++-++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 34444455667777788888888888888753 23455566666666677777776665554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0003 Score=53.68 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 85 RGKPQEAQAIFNNLIEGGHK-PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 163 (637)
+|+++.|+.+|+++.+.... ++...+..+..++.+.|++++|..++++ .+.+ +.+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666653221 1233344455666666666666666655 2221 1222333344555556666666666
Q ss_pred HHHH
Q 006640 164 TFWK 167 (637)
Q Consensus 164 ~~~~ 167 (637)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0002 Score=42.43 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGG 102 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 102 (637)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 357777777777777777777777777654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.072 Score=45.76 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PNLKTFET 463 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 463 (637)
.|+...-..|..+..+.|+..+|...|.+...--+..|....-.+..+....+++..|...++++.+.... -.+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555555666666666666666666666665444556666666666666666666666666666654210 01223444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.+.+...|+..+|...|+.... .-|+...-......+...|+.++|..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55666666666666666666655 3344443333334445566555554433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.085 Score=45.33 Aligned_cols=127 Identities=16% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006640 175 PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PDVVTYNT 253 (637)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ 253 (637)
|++..-..|..+....|+..+|...|.+... |.+..|......+.++....+++..|...++.+.+.... .++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555556666666777777777777766653 334556666666666666777777777777666553210 11223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
+.+.+...|.+..|+..|+..... -|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777777777777776654 2444433334455666666655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=47.67 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENGM-DPDSIFFNAVINAFSESG--------NMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
...|..+...+++...-.+|+.+.+.|+ -|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677888888888888888888 788888888888777653 2345566777777777777777777
Q ss_pred HHHHHHHh
Q 006640 182 TLIKGYGI 189 (637)
Q Consensus 182 ~li~~~~~ 189 (637)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.064 Score=51.79 Aligned_cols=111 Identities=20% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-KNITEAWNVMHKMAAS----GMKPD--VVTYNTIAT 256 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----g~~~~--~~~~~~li~ 256 (637)
+..|...|++..|-+.+..+ ...|... |++++|++.|++..+. | .+. ..++..+..
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 34455555555555544443 3344455 6777777777766532 1 111 234445666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCh-----h-hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 257 AYAQNGEADQAEEVIVEMEHNGVQPNG-----R-TCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.+.|++++|.++|+++.......+. . .+...+-++...|++..|.+.+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777777777777766554322111 1 112223344445666666666666543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.084 Score=49.46 Aligned_cols=55 Identities=9% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+..-|.+.|.+..|+.-|+.+.+. +.+........++.+|...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455566666666666666543 2222333455555666666666666555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.019 Score=53.64 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
|...|..|...|...|+++.|..-|.+..+.. ++++..+..+..++.... ...++..+|+++...+.. |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44555555555555555555555555554442 344444444444333221 233444555555443211 2333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 006640 464 LMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444555555555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=46.81 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..+.+.|++++|...|+++++.. +.+...|..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555442 33444555555555555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0015 Score=46.83 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=33.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...+...|++++|+..|+++++..+. +...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666654311 444566666666666666666666666654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.21 Score=46.85 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHN--GVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
.+.+.|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3555666667777777777666653 112233445556667777777777766655443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=47.38 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIM 484 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 484 (637)
+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3444444444444444444444444443211 2223444444444444 344444444443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.031 Score=45.44 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 397 GYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+|++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444432222 1233334444444444444444444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=47.01 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG-SMDRAIEVFDKMCEH 452 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 452 (637)
+..+|..+...+...|++++|+..|.+.++.. +.+...|..+..+|...| ++++|++.|++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677777888888888888888888887764 556777888888888888 688888888877763
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.014 Score=51.75 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 006640 105 PSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----------------NMEEAMD 163 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~ 163 (637)
.+-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 456666666666653 3556666667777777777777777777777654311 2344566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 164 TFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
++++|...|+-||..++..++..+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666654444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.035 Score=51.85 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAASGMKPDVVTYN 252 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 252 (637)
|...|-.|...|...|+.+.|..-|....+.. ++|...+..+..++... ....++..+|+++++.+ +-|..+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 55566666666666666666666666665543 34455555555444322 23345566666665543 22444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555666666666666666666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.073 Score=48.37 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH-----H
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN-----V 218 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----~ 218 (637)
+.+.++..+.-.+.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..+ +.|..+.+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34444445555555555555555555555444555555555555556666666555554443221 12222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
....|.-.+++..|...+.+....+ +.|+...|.-.-+..-.|+...|.+..+.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233444555555555555555443 223333333333333345566666666665554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.34 Score=47.28 Aligned_cols=281 Identities=16% Similarity=0.185 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
+|..+...-.+.|+.+-|..+++. .|++.- =+..+...|+.+.| +.+..+.| .||.. |..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DLi-~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDLI-YLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccHH-HHHHHHHHH
Confidence 577788888899999999887763 344322 23445566666666 45677776 55543 444443322
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
+.. .. +++ .+.... |.. ..+...|++..+.+.-..+|.+--+ ........+-.++.. .+.+.-.
T Consensus 68 ~l~-~s---~f~-~il~~~--p~a---~~l~~~~~r~~~~~~L~~~y~q~d~-----~~~~a~~~l~~~~~~-~~~~~~~ 131 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQN--PVA---SNLYKKYCREQDRELLKDFYYQEDR-----FQELANLHLQEALSQ-KDVEEKI 131 (319)
T ss_pred hCC-HH---HHH-HHHHhC--cch---HHHHHHHHHhccHHHHHHHHHhcch-----HHHHHHHHHHHHHhC-CChHHHH
Confidence 222 21 233 333221 221 2344455565555554444432111 011111112222211 3333322
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HH-HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 234 NVMHKMAAS-GMKPDVVTYNTIATAYAQNGEADQAEEVIVE---ME-HNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 234 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
..+....+. +-..+......++ ++..++++. +. ..+......+.+..+.-+...|+...|.++..+
T Consensus 132 ~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~ 202 (319)
T PF04840_consen 132 SFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE 202 (319)
T ss_pred HHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222222210 0001111111111 111122111 10 011112233455556667777888877777666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
.. .|+..-|...+.+++..++|++...+-.. ..+++.|..++.+|.+.|...+|..+...+ +
T Consensus 203 Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~--- 264 (319)
T PF04840_consen 203 FK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI-----P--- 264 (319)
T ss_pred cC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C---
Confidence 64 57778888888888888888776654321 123466777888888888888887776652 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
+..-+.+|.++|++.+|.+.-.+
T Consensus 265 --~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 265 --DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred --hHHHHHHHHHCCCHHHHHHHHHH
Confidence 24556778888888887665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0026 Score=46.08 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006640 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|++++|+..|+++.+..+. +...+..++.+|.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444333222 333333444444444444444444444433
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.06 Score=43.78 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPS--LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAF 152 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 152 (637)
+..++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455566777777777777776654332 2244445566666677777777666665532 11 122222233345
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006640 153 SESGNMEEAMDTFWKMK 169 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~ 169 (637)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=45.99 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.|++++|+++|+++.... |.+...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443332 22333444444444444444444444444443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.024 Score=53.51 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHHcCCH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ-KSTFLLLAEARRATGLT 509 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~g~~ 509 (637)
.+.|++++|+..|+.+++..+... ...+..+..+|...|++++|...|+.+.+ +.-.|. ...+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554321100 13444555556666666666666666543 111111 22444455555566666
Q ss_pred HHHHHHHHHHhhccc
Q 006640 510 KEAKRILSKIKNKER 524 (637)
Q Consensus 510 ~eA~~~~~~~~~~~~ 524 (637)
++|...++++....|
T Consensus 234 ~~A~~~~~~vi~~yP 248 (263)
T PRK10803 234 AKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHHCc
Confidence 666666666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=57.03 Aligned_cols=265 Identities=15% Similarity=0.124 Sum_probs=143.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--Hc--CCC-CCHHHHHHHH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSL----VTYTTLLAALTIQKRFNSIHSIMSQVE--EN--GMD-PDSIFFNAVI 149 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~~-~~~~~~~~li 149 (637)
...+++.|+....+.+|+..++-|-. |. ..|..|..+|.-.+++++|++.+..=+ .+ |-. -...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45689999999999999999987642 33 356777788888889999988765421 11 100 0112223344
Q ss_pred HHHHhcCCHHHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWK----MKESGL-TPTTSTYNTLIKGYGIAGK--------------------PEESVKLLDLMS 204 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~----m~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 204 (637)
..+--.|.+++|...-.+ ..+.|- ......+..+...|...|+ ++.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 444455666666543222 222220 0123345556677765552 233344443221
Q ss_pred h----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 205 R----EGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA----SGMK-PDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 205 ~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
+ .|.--.--..|..|...|.-.|+++.|+...+.-+. .|-+ .....+..|.+++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 110001112345555555566777777766554321 1211 112455567777777777777777776543
Q ss_pred H----CC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006640 276 H----NG-VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY----G-VHPNLVIFNLLIKGFVEIMDRDGVDEVLALM 344 (637)
Q Consensus 276 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (637)
. .| -.....+..+|.+.|.-..++++|+.++.+-... + ..-....+-++..++...|..+.|....+.-
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 11 1123445566777777777777777766543221 1 1123445666667777777766666555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.44 Score=46.45 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.-+.-+...|+...|.++-.+.. -||...|...+.+++..|+|++-..+... . -.++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34445666778899999988877774 68999999999999999999987765432 1 24578999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..|...+|..+..+ +. + ..-+..|.+.|.+.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999988876 22 2 34567788999999998876553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.22 Score=51.21 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------- 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 459 (637)
+..+...+...+.+...+.-|.++|.+|-.. .++.......+++.+|..+-++.-+ ..||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3444555555555666677777777776431 2455566677777777777666544 223321
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 460 ----TFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 460 ----~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
-|.---.+|.++|+..||.++++++.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12222334555566666666655553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.02 Score=55.27 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIE----SG-FHPNVV 424 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~ 424 (637)
.|..|...|.-.|+++.|+..++.-+. .|- ......+..|.+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355555566667888888887765332 121 11245677788888888999999888876432 22 123345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.-+|..+|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666788888888888999888865432 11 11234578888889988898888888776553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.095 Score=44.59 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=58.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
+...|++++|..+|+-+...+ +-|...|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 456777777777777766554 45666677777777777777777777776665433 2444455566677777777777
Q ss_pred HHHHHHHHH
Q 006640 478 EEILQIMKA 486 (637)
Q Consensus 478 ~~~~~~m~~ 486 (637)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.21 Score=51.37 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
.+.+-+-.|.+.|.+++|.++--- |+ ...-|..|.......-+++-|++.|.+....
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------------- 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL----------------- 614 (1081)
T ss_pred cccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------------
Confidence 334445567788888877654211 11 2223444444444444555555555443321
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.+-+..--++++.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 11222334566677766566532 34455566777777777754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.69 Score=45.81 Aligned_cols=427 Identities=14% Similarity=0.124 Sum_probs=232.2
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 006640 82 LIERGKPQEAQAIFNNLIEGGHKPSLV------TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA--FS 153 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~ 153 (637)
+.+++++.+|..+|.++.+. ...+++ .-+.++++|... +.+.....+....+.. | ...|-.|..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 45789999999999998764 222323 234567777643 5555555555555432 2 2233333333 34
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHH
Q 006640 154 ESGNMEEAMDTFWKMKES--GLTP------------TTSTYNTLIKGYGIAGKPEESVKLLDLMSREG---NVKPNLRTY 216 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~ 216 (637)
+.+.+..|.+.+..-.+. +..| |-..-+..++.+...|++.+++.+++++...- ....++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999888766544 2211 22223566788899999999999999987642 123688888
Q ss_pred HHHHHHHHhcC--------C-------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 006640 217 NVLVRAWCNEK--------N-------ITEAWNVMHKMAAS------GMKPDVVTYNTIATAYAQN--GEADQAEEVIVE 273 (637)
Q Consensus 217 ~~li~~~~~~g--------~-------~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 273 (637)
+.++-.+.+.- . ++.+.-+.++|... .+.|-......++....-. ....--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 88665554321 1 12222222233221 1222222222222222111 111112222222
Q ss_pred HHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 274 MEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGV----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 274 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
-...-+.|+- -+...|...+.+ +.+++..+.+.+....+ ..=..++..++...++.++...|.+.+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 2233333442 223334444444 45555555544433211 1123567888888888899888888888776543
Q ss_pred CCCCHHH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCC-HHHHHHHHHH
Q 006640 349 VNPDVIT-------YSTIMNAWS----TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK---GYVREQE-PEKAEELLMT 413 (637)
Q Consensus 349 ~~~~~~~-------~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~-~~~A~~~~~~ 413 (637)
|+... -..+.+..+ ..-+...-+.++..+....+. ......-|+. -+-+.|. -++|+.+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 22211 111112211 111233334455555544321 1222222332 2344555 7889999999
Q ss_pred HHHCCCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHhcCChhHHHHH
Q 006640 414 MIESGFHPNVVIFTTIIS----GWCSD---GSMDRAIEVFDKMCEHGVSPNL----KTFETLMW--GYSEARQPWRAEEI 480 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~--~~~~~g~~~~A~~~ 480 (637)
+.+-. +-|...-|.+.. .|.+. ..+.+-+.+-+-+.+.|+.|-. ..-+.|.. -+...|++.++.-+
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 98753 445554444332 23221 2233334444444567877643 33344433 34567888888766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006640 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
-.-+.+ +.|+..+|..++-.+....+++||..++.++|.
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 555555 889999999999999999999999999998864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.055 Score=46.30 Aligned_cols=69 Identities=12% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKST 495 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 495 (637)
...++..+...|++++|+.+.+.+....+ -|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444455556666666666666655432 244455666666666666666666655542 3566665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.68 Score=44.88 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHA-YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVF 446 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (637)
+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+. .|.+.++...+ +.+.|+ .++.=+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cHHHHH
Confidence 344555555554443 444322 223456788899999999999988876 55555554333 334443 444444
Q ss_pred HHHHHC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhc
Q 006640 447 DKMCEH-GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT-GLTKEAKRILSKIKNK 522 (637)
Q Consensus 447 ~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 522 (637)
++.... .++|| .+....+..+-...|++..|..--+.... ..|....|..|.++-... |+-.++..++.+...-
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 444321 23444 55777788888889999888776666554 778889999999886655 9999999998887543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.014 Score=42.93 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
..|.+.+++++|.++++.+...+ |.++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666655553 445555555555566666666666666665553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.065 Score=50.63 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPNLKTFETL 464 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 464 (637)
|...+..+.+.|++++|...|+.+++. .|+ ...+-.+...|...|++++|...|+.+.+.-. ......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334455566666666655554 122 13444555555666666666666666654311 0112334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 006640 465 MWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+...|+.++|..+|++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666666666665544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.62 Score=42.61 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----H
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI-----L 394 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 394 (637)
+.+.++..+...+.+.-...++..+++...+.++...+.+.+.-.+.|+.+.|...|+...+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666666677777777777777776666777888888888888888888888887765432333333333 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
...|.-.+++..|...+.++...+ +.|+...|.-.-+..-.|+..+|++..+.|.+.. |.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 334556777888888888877664 5566666666666667788888888888888743 4444333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.4 Score=46.56 Aligned_cols=110 Identities=9% Similarity=0.016 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+.+. .+.-|..+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555677888899988888876 6888888888899999999887666554432 3567778889999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+.|+.+||.+++-+.. +.. ..+.+|.+.|++.+|.++.-+
T Consensus 756 ~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999876532 111 567888999999999887654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.33 Score=44.21 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
....+...|++++|...|+.+...... --....-.++.++.+.|++++|...+++.++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543211 1122333444555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.43 Score=43.41 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=10.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~ 276 (637)
...|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444444555555544444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.041 Score=47.11 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKTFE 462 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 462 (637)
..+...++..+...|++++|..+.+.+.... |-|...|..+|.+|...|+..+|+++|+++. +.|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456667778888999999999999999875 7788999999999999999999999998875 358888887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.00048 Score=41.62 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=28.5
Q ss_pred HHHHHhhhccCCCCCCcccccccccccCCCchhh
Q 006640 539 LERLYHKEATTASYPNLLQIPNVVSSDQKGSAAA 572 (637)
Q Consensus 539 ~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~ 572 (637)
++|+++++|+++. ++..||++|...|++++|.
T Consensus 2 y~kAie~~P~n~~--a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE--AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH--HHHHHHHHHHHCcCHHhhc
Confidence 5789999999976 5789999999999999986
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=41.45 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|.+.++++.|.++++.+...++. +...|.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444322 334444444444444444444444444444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.1 Score=44.20 Aligned_cols=27 Identities=15% Similarity=-0.094 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+..++.++.-.|+.++|.+..++|.+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 344445555555555555555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.15 Score=46.84 Aligned_cols=47 Identities=30% Similarity=0.278 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhh
Q 006640 475 WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL-TKEAKRILSKIKN 521 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~eA~~~~~~~~~ 521 (637)
+-++.++++|...|+.||.++-..+++++++.|. ..+-.+++--|+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 3478899999999999999999999999998886 3444444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.06 E-value=1 Score=44.54 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=81.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 359 IMNAWSTAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 359 li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
++-+|....+++..+++.+.+...- +.....+-...+-++.+ .|+.++|+.++..+......+++.++..++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555666666666666655421 01112222223333444 56666666666664443345566666655554
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHH---HHH-HHCCCCCCHH-
Q 006640 433 WCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR----AEEIL---QIM-KAFGVHPQKS- 494 (637)
Q Consensus 433 ~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~m-~~~g~~p~~~- 494 (637)
|-. ....++|+..|.+.-+. .||..+-..++..+...|...+ ..++- ..+ .+.|..-...
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 431 12367788888877763 3555443333333444443222 22222 111 1233222222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 495 --TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 --~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.+..++.+..-.|+.++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3446667777778888887777777544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.025 Score=42.24 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
+++.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555544443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.08 Score=52.80 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 446788999999999999999999999999886 4553 459999999999999999999999999852 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHHCCCC
Q 006640 461 FETLMW--GYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 461 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
|..+.. .+..-.+..+..++++.+.+.|..
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 221111 111222334566667777666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=43.89 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
...-+...|++++|..+|+-+...++. |..-|..|..+|-..+.+++|+..|......+.. |...+......+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344466899999999999999876543 6777888888888999999999999887543322 33345567788999999
Q ss_pred HHHHHHHHHHHhhc
Q 006640 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
.++|+..|+.+..+
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998775
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.57 Score=47.06 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 369 MDKCKEIFDDMGK-AGIKPD-AHAYSILAKGYV---------REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 369 ~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+.|..+|.+... ....|+ ...|..+...+. ......+|.++.++..+.+ +.|+.....+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4566777777662 122333 333333333222 1234567788888888886 788999888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 006640 438 SMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK---STFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~eA~ 513 (637)
+++.|...|++....+ ||.. +|......+..+|+.++|.+.+++..+ ..|.. ......++.|+.. .+++|.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 9999999999998854 6644 677777778889999999999998665 55553 3444555666655 468888
Q ss_pred HHHHHHh
Q 006640 514 RILSKIK 520 (637)
Q Consensus 514 ~~~~~~~ 520 (637)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 8876543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.75 Score=37.31 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
......-++...+.|.-+.-.++++++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455666777777777777777776533 677777777788888888888888888887777653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.34 Score=48.50 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=57.6
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----VTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
..+.+...|+.+...|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999998874 4542 46899999999999999999999998875
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.7 Score=43.53 Aligned_cols=389 Identities=12% Similarity=0.042 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVT-YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
...|+.|+..--...+.+.+..+++.++.. .|.... |-....-=.+.|..+.+.++|++.+. +++..+..|.....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 334555554444444445555666666532 343332 22233333455666666666666654 34555555555554
Q ss_pred HHHh-cCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---H
Q 006640 151 AFSE-SGNMEEAMDTFWKMKES-GLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW---C 224 (637)
Q Consensus 151 ~~~~-~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~---~ 224 (637)
.+.. .|+.+.....|+..... |.. .+...|...|..-..++++.....+++++.+. | ..-++....-| .
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHH
Confidence 4432 35566666666665542 110 13445666666655666666666666666552 1 11111111111 1
Q ss_pred h------cCCHHHHHHHHHHHHH--------------------CCCCCCH--HHHHHHHH-------HHHHcCCHHHHHH
Q 006640 225 N------EKNITEAWNVMHKMAA--------------------SGMKPDV--VTYNTIAT-------AYAQNGEADQAEE 269 (637)
Q Consensus 225 ~------~g~~~~A~~~~~~~~~--------------------~g~~~~~--~~~~~li~-------~~~~~g~~~~A~~ 269 (637)
+ ....+++.++-..... .+-+.+. ...+.+-. .+-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 1122222222211111 0000000 01111111 1111122222223
Q ss_pred HHHHHHHC---CC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 270 VIVEMEHN---GV----QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 270 ~~~~~~~~---~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.|+.-.+. .+ +++..+|..-++.-.+.|+.+.+.-+|+...--- ..=...|--.+.-....|+.+.+..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 33332221 11 2245678888888888999999999888876311 1112234334444444588888887776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAE---ELLMTMIESG 418 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 418 (637)
...+...+..+.+--.-....-..|++..|..+++.+...- |+. .+-..-+.+..+.|..+.+. .++......
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 66554433333332222223445789999999999988753 432 22233345566788888777 333333322
Q ss_pred CCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 419 FHPNVVIFTTIIS-----GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 419 ~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.-+..+...+.- -+...++.+.|..++.++.+. .+++...|..++..+...+..
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 222222222222 234567889999999998875 445667788888777665533
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.032 Score=41.58 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEH----GVS-PN-LKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555421 100 11 223444444444555555555544443
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.93 Score=41.09 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m 168 (637)
.++....+|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444445555555555554444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.27 Score=45.55 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH-HHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK-STFLLLA 500 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~-~~~~~l~ 500 (637)
.|+.-+. +.+.|++..|...|...++..+. -....+-.|..++...|++++|..+|..+. +++-.|.. +.+.-++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 44566677777777777765321 112344557778888888888888887774 45555554 5777888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 501 EARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 501 ~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
....+.|+.++|...++++..+.|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 8888888888888888888877664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.25 Score=40.66 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006640 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
..|+..+..+++.+|+.+|++..|+++++...+.-+++-+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666666666666665555555666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.1 Score=40.27 Aligned_cols=145 Identities=13% Similarity=0.126 Sum_probs=75.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.....|++.+|..+|......... +...-..++.+|...|+.+.|..++..++.... .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 445566666666666666655433 345556666666677777777777766654320 011111112233333433333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcCCH
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-QPNGRTCGIIISGYCKEGKI 299 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 299 (637)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. ..|...-..++..+.-.|.-
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 333333333321 22555555666667777777777666655544321 13445556666666665533
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.2 Score=46.50 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTT-IISGWCSDGSMDRAIEVFDKMCEHG---VSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
....+.|.+++..+.+. -|+...|.. -...+...|++++|++.|++..... .......+--+...+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888876 466555543 3445677888888888888765321 11223345556777778888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHhhcc
Q 006640 477 AEEILQIMKAFGVHPQKSTFLLLA-EARRATGLT-------KEAKRILSKIKNKE 523 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~-------~eA~~~~~~~~~~~ 523 (637)
|.+.|..+.+.. .....+|.-+. -++...|+. ++|..++.+++...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 988888887632 12334444333 345567777 88888888887553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.55 E-value=2.9 Score=41.60 Aligned_cols=402 Identities=11% Similarity=0.097 Sum_probs=208.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 93 AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESG 172 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 172 (637)
++=+++.+ .+.|..+|-.|+.-+..++..++..+++++|..- ++--..+|..-+++=....++.....+|.+.....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44455554 3568999999999999999999999999998743 34456678888887777889999999999987764
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH---------hcCCHHHHHHHH
Q 006640 173 LTPTTSTYNTLIKGYGIAGKP------EESVKLLDLMSREGNVK-PNLRTYNVLVRAWC---------NEKNITEAWNVM 236 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~---------~~g~~~~A~~~~ 236 (637)
. +...|...+.---+.+.. ....+.|+-......+. .....|+..+...- .+.+++...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 466677666544443311 11122333332211122 23445555544332 233455666667
Q ss_pred HHHHHCCCCCCHHHHHH------HHHHHH-H------cCCHHHHHHHHHHHHH--CCCC----CChhhHHHH--------
Q 006640 237 HKMAASGMKPDVVTYNT------IATAYA-Q------NGEADQAEEVIVEMEH--NGVQ----PNGRTCGII-------- 289 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~------li~~~~-~------~g~~~~A~~~~~~~~~--~~~~----~~~~~~~~l-------- 289 (637)
.+|+..-+..=...|+- =++-.. + .--+-.|...++++.. .|.. .+..+++..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 77765322111122211 111100 0 0113345555555432 2221 112222221
Q ss_pred ---HHHHHHc-----CC-HHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 290 ---ISGYCKE-----GK-IKE-ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 290 ---i~~~~~~-----g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
|.--... |+ ... ..-++++.... +.-....|----.-+...++-+.|........+. .|. .-..+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 1110000 00 000 01111111111 0112222322222333444445555444433222 122 11112
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------H---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV------R---EQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...|.-..+-+.....|+.... .|.+-|. . .|+++...+++-+-. ..=...|...+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~ 404 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHL 404 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHH
Confidence 2223333333333333333221 1111111 0 233332222222111 22356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGL 508 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 508 (637)
....+..-++.|..+|-+..+.| +.++...+.+++.-+ ..|+..-|..+|+.-.. .-||...|. ..++-+.+.|+
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCc
Confidence 88888888999999999999887 567777888888755 46888899999987544 345655554 66677788899
Q ss_pred HHHHHHHHHHHhhc
Q 006640 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
-..|..+|++..++
T Consensus 482 e~naraLFetsv~r 495 (660)
T COG5107 482 EENARALFETSVER 495 (660)
T ss_pred HHHHHHHHHHhHHH
Confidence 99999999866544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.6 Score=41.09 Aligned_cols=311 Identities=15% Similarity=0.169 Sum_probs=198.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHH
Q 006640 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA--FSESGNMEEAM 162 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~ 162 (637)
.+..+...|..-.+. ..|..|-.++ ...|+-..|.++-.+..+. +..|......|+.+ -.-.|+.+.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 455566666655431 1244444333 3457888888777665432 23444444444433 34569999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKG----YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+-|+.|.. |+.+-..=+++ --+.|..+.|...-+...... +.-...+...+...+..|+++.|+++++.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999986 44444333332 246788999999888887653 44467889999999999999999999987
Q ss_pred HHHCC-CCCCHHH--HHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 239 MAASG-MKPDVVT--YNTIATAYA---QNGEADQAEEVIVEMEHNGVQPNGRTC-GIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-+... +.++..- -..|+.+-. -.-+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 76543 3444322 223333222 12355666666555544 35664332 2345788999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM---KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
.. |.+..+...+ +.+.|+ .+..-++.. .... +.+......+..+-...|++..|..--+..... .|..
T Consensus 292 ~e--PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre 362 (531)
T COG3898 292 AE--PHPDIALLYV--RARSGD--TALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE 362 (531)
T ss_pred cC--CChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence 74 4444433322 334444 344333333 2222 235566667777878889999888877776654 6788
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCC
Q 006640 389 HAYSILAKGYVR-EQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 389 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
..|-.|.+.-.. .|+-.++...+.+..+..-.|+
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 888888887654 5999999999999987643343
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.53 Score=45.11 Aligned_cols=128 Identities=15% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-H-
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-----PDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNV-V- 424 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~- 424 (637)
...+..++...+.++++++.|+...+.... ....++..|...|.+..++++|.-+..+..+. ++ .|. .
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHH
Confidence 344666777788888888888876653111 12467888888888888998888777665432 21 121 1
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 425 ----IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-KTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 425 ----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+.-.|..++...|....|.+.-++..+ .|-.|.. .....+.+.|...|+.+.|+.-|+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223344567778888888888777653 3433322 24566777888888888888777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.36 Score=39.68 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHc
Q 006640 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~ 506 (637)
...|+..++.+++.+|+..|++..|+++.+... .+++..+...|..++.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 456788888888888888888888888887764 577777777777777554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.59 Score=45.77 Aligned_cols=139 Identities=10% Similarity=-0.015 Sum_probs=80.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
.+.|.+.|++..|...|++.... -... ..-+.++..... ..-..+++.|...|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 35678888888888888876541 0000 000111111110 11234456666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT-EAWNVMH 237 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~ 237 (637)
..|++.-.+..+.+.. |+...-.-..+|...|+++.|+..|.++.+.. |.|-..-+.|+.+-.+..... ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776543 66666667777777777777777777777753 333344444444444433333 3356666
Q ss_pred HHHH
Q 006640 238 KMAA 241 (637)
Q Consensus 238 ~~~~ 241 (637)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.78 Score=37.09 Aligned_cols=93 Identities=18% Similarity=0.111 Sum_probs=69.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhc
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI---FFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~ 155 (637)
.-++++.|+++.|++.|.+.+.. .+..+..||.-..++.-+|+.++|++-+.+.++..-+.... .|..-...|-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34677889999999999988864 23478889999999999999999999888887754233333 333334567777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 006640 156 GNMEEAMDTFWKMKESG 172 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~ 172 (637)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.64 Score=45.51 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEA 502 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~ 502 (637)
.+++.+..+|.+.+++.+|++.-++.++.+. +|...+-.-..+|...|+++.|+..|+++++ +.|+..... .++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3445555666666666666666666666542 3555555556666666666666666666666 555554333 33333
Q ss_pred HHHcCCHH-HHHHHHHHHhhc
Q 006640 503 RRATGLTK-EAKRILSKIKNK 522 (637)
Q Consensus 503 ~~~~g~~~-eA~~~~~~~~~~ 522 (637)
-.+..... ...+++..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 33333333 335666666544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.3 Score=44.62 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
..+..++.+.|+.++|++.|++|.+..... +......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445556667777777777777776532211 2235556777777777777777776654
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.4 Score=37.11 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQ 120 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 120 (637)
..++..+...+.+......++.+...+ ..++..++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344555555555555555555555443 23444455555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.82 Score=45.97 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 403 EPEKAEELLMTMIES-GFHPN-VVIFTTIISGWCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+.. |......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 356788899998821 12444 3444444444332 33466788888888887654 888888888888999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 472 RQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
|+.+.|...|++... +.|+.. .|......+.-+|+.++|.+.+++.....|.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999999887 678754 6777777888899999999999998877663
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.85 Score=46.77 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=75.6
Q ss_pred HHHHHcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 80 NSLIERGKPQEAQAIFN--NLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
....-+|+++++..+.+ ++.. .+ +..-.+.+++-+-+.|-.+.|+.+- .|+. .-.....++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCC
Confidence 44455677777666654 2221 11 2344566666666666666666542 2222 12334456666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHH
Confidence 66666554433 2455666666666666666666666665432 4555555666666665555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 271 (637)
.....| -++....++.-.|+.++..+++
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 555443 1233334444455555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=3 Score=38.32 Aligned_cols=165 Identities=16% Similarity=0.087 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK-GYVREQEPEKAEELLMTMIESGF--HPNVVIFTTIIS 431 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~ 431 (637)
.+......+...+.+..+...+.........+ ......... .+...|+++.|...+.+...... ......+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 33333444444444455555555444322111 111111112 44555555555555555543210 012222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTK 510 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 510 (637)
.+...++.+.|...+.++...........+..+...+...+..++|...+..... ..|+ ...+..+...+...|..+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHH
Confidence 3445556666666666655532110244555555555556666666666655544 2232 233333333333555556
Q ss_pred HHHHHHHHHhhc
Q 006640 511 EAKRILSKIKNK 522 (637)
Q Consensus 511 eA~~~~~~~~~~ 522 (637)
++...+.+....
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 666555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.9 Score=36.42 Aligned_cols=127 Identities=9% Similarity=0.096 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
...++..+...+........++.+...+ +.+...++.++..|++.. ..+....+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHH
Confidence 3567777777888999999999998887 578889999999999864 3444444442 1 244556668888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 260 (637)
.+.++++.-++.++.. +...+..+... ++.+.|.+.+.+-. +...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 9999999999987743 23334444444 88999999887732 56688888877654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.89 E-value=4.6 Score=40.32 Aligned_cols=393 Identities=14% Similarity=0.159 Sum_probs=202.2
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006640 75 MTKLMNSL--IERGKPQEAQAIFNNLIEG--GHKP------------SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGM 138 (637)
Q Consensus 75 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (637)
|-.|..++ .+.+.+++|++.|.....+ +..| |-+.=+..+.++...|++.+++.++.++...=+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444443 4688899998888776654 2221 111223445677788899888888888765433
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 006640 139 ----DPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 139 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
..+..+|+.++-++.++ .|-++.+. ++-| -|--++-.|.+.=..-++.. +.+ +-|
T Consensus 160 krE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~p---dyYemilfY~kki~~~d~~~-Y~k------~~p 221 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYP---DYYEMILFYLKKIHAFDQRP-YEK------FIP 221 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccCh---HHHHHHHHHHHHHHHHhhch-HHh------hCc
Confidence 37788888877666543 34444332 1222 24444444433211111100 000 112
Q ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CChh
Q 006640 212 NLRTYNVLVRAWCN--EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----PNGR 284 (637)
Q Consensus 212 ~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ 284 (637)
-......++.-..- ..+..--.+++......-+.|+-. +...|...+.+ +.+++..+-+.+....+. .=..
T Consensus 222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22222222222111 111111222222222222334422 22233333333 444444444433322111 1135
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHH----cCCHhHHHHHHHHHHhCCCCCCH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL-------LIKGFVE----IMDRDGVDEVLALMKEFRVNPDV 353 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 353 (637)
++..++....+.++..+|.+.+.-+... .|+...-.- +.+..+. .-+...-..+++......+...
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq- 376 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ- 376 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-
Confidence 6777788888888888888888777654 233321111 1122221 1112233445555554433211
Q ss_pred HHHHHH---HHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHH---HcCCHHHHHHHHHHHHHCCCCCC
Q 006640 354 ITYSTI---MNAWSTAGF-MDKCKEIFDDMGKAGIKPDAHAYSILAK----GYV---REQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 354 ~~~~~l---i~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
....-| ..-+-+.|. -++|+.+++.+.+-. +-|..+-|.... .|. ....+..-.++-+-+.+.|++|-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 111112 223445555 888999999988742 234444333322 232 23344555555555667777664
Q ss_pred HH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006640 423 VV----IFTTIISG--WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 423 ~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
.+ .-|.+..+ +..+|++.++.-.-.=+.+ +.|++.+|..++-++....++++|++++.. +.|+..++
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 33 44445444 4578999988665544444 779999999999999999999999999876 56777666
Q ss_pred HH
Q 006640 497 LL 498 (637)
Q Consensus 497 ~~ 498 (637)
..
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 54
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.2 Score=44.42 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS------TYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
...++....=.|+-+.+++.+.+..+.+--..+. .|+..+..++. ....+.|.++++.+.+.- |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555555677777777777765532111222 23444443333 456788999999998863 6655
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006640 215 TYNV-LVRAWCNEKNITEAWNVMHKMAASG---MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 215 ~~~~-li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
.|.. -.+.+...|++++|++.|++..... .+.....+--+.-.+.-..+|++|.+.|..+.+..- .+...|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 5544 4566778899999999999765321 112334455677778889999999999999987532 2333444333
Q ss_pred -HHHHHcCCH-------HHHHHHHHHHHHc
Q 006640 291 -SGYCKEGKI-------KEALRFARTMKEY 312 (637)
Q Consensus 291 -~~~~~~g~~-------~~A~~~~~~~~~~ 312 (637)
.++...|+. ++|.++|.++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 344456777 8899999888643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.6 Score=42.01 Aligned_cols=166 Identities=12% Similarity=0.036 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC----CHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKA-GIKP---DAHAYSILAKGYVREQEPEKAEELLMTMIESGF-HP----NVVI 425 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~ 425 (637)
.|..+..++.+..++.+++.+-+.-... |..| .-...-++..++.-.+.++++++.|+...+... .. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555666666666666655543321 2222 123344567777788889999999998775321 11 2347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCC
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKT-----FETLMWGYSEARQPWRAEEILQIMK----AFGVHPQ 492 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 492 (637)
+..|.+.|.+..|+++|+-+..++.+ .++..-..- ...+.-++...|..-.|.+.-++.. ..|-.|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88899999999999999988877654 233311112 3344557788898888888887764 4554444
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 493 KS-TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 493 ~~-~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.. ...++.|+|...|+.|.|.+-++++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33 45688899999999999988887763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=4 Score=38.47 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
.......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334567888888999888887764 455677778888888999999999988887654222222222233444555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 264 ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
..+...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444332 22566666777778888888888776655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.83 Score=36.94 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+..|+++.|++.|.+.+.. .|.....||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554443 133444455555555555555555555554444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.36 E-value=4.9 Score=40.78 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL-VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
..+|...-+..+++.-++.-.+.++ +.||- ..|..|.. -......++.++|++..+.| +. .+.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-E~----------~lg~ 236 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-EA----------SLGK 236 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-HH----------hhch
Confidence 3456666667777777777777665 33432 22322211 12335677888888777654 10 0000
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.......-..++....+...+-..+-..+..+.-+.|+.++|++.|.+|.+......+......|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00000101112222222222334444556677778889999999988887654111234567778888888888888888
Q ss_pred HHHHHHHC
Q 006640 235 VMHKMAAS 242 (637)
Q Consensus 235 ~~~~~~~~ 242 (637)
++.+..+.
T Consensus 317 lL~kYdDi 324 (539)
T PF04184_consen 317 LLAKYDDI 324 (539)
T ss_pred HHHHhccc
Confidence 88887543
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.18 Score=32.53 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFT 427 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (637)
+..+...|...|++++|.++|+++++.. |.|...|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 4444455555555555555555555442 33444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.19 E-value=4.3 Score=36.99 Aligned_cols=204 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.|.....+|...+++++|...+.+..+.- ..+...|.+ ...++.|.-+.+++.+.. --+..|+.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 34444556666777888877776665321 222222221 122345555555555431 11234556667777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHHcCC
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS---G--MKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g--~~~~~~~~~~li~~~~~~g~ 263 (637)
.+|.++.|-..+++..+. ...-++++|+++|++.... + ...-...+....+.+.+...
T Consensus 103 E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 888877777666655431 1223344455555443321 0 00001222334445555556
Q ss_pred HHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHh
Q 006640 264 ADQAEEVIVEMEHN----GVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKEYG---VHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 264 ~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
+++|-..|.+-... .--++ -..+...|-.|.-..++..|.+.++.--+.+ -+.+..+...|+.+|-. |+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHH
Confidence 66555544332110 00011 1223344444555566666666666543221 12244455555555533 4444
Q ss_pred HHHHH
Q 006640 336 GVDEV 340 (637)
Q Consensus 336 ~a~~~ 340 (637)
++..+
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.18 E-value=10 Score=41.11 Aligned_cols=175 Identities=11% Similarity=0.108 Sum_probs=110.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA----LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
..-+..+.+...++-|+.+-..- ..+..+...+.+. +.+.|++++|..-|-+.+..- .| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 34466677777777777665443 2344444444433 456789999888777655431 22 234555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHH
Confidence 66666777778888888888876 67777889999999999888777776554 3311 1123445566666676777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
|..+-.+... ....... .+-..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 7665544432 2333222 344567888888887665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.5 Score=45.10 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
.+.+++.+-+.|.++.|+++-. |+. .-.....+.|+++.|.++..+ ..+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 6778888889999999987643 332 233445688999999876442 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998764 6778888889999988888887777665 26666777777888888887
Q ss_pred HHHHH
Q 006640 235 VMHKM 239 (637)
Q Consensus 235 ~~~~~ 239 (637)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.14 E-value=9.5 Score=40.71 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=168.6
Q ss_pred CCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 006640 171 SGLTPTTSTYN-----TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN--ITEAWNVMHKMAASG 243 (637)
Q Consensus 171 ~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g 243 (637)
.|++.+..-|. .+|.-+...+.+..|+++-..+.... ......|.....-+.+..+ -+++.+.+++=....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 35665555553 35677778888999998887775321 1124556666666665532 223333333222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 006640 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLV 319 (637)
Q Consensus 244 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 319 (637)
. -+..+|..+.+-....|+++.|..+++.-...+.. .+..-+...+.-..+.|+.+-...++-.+... .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 34567788888888899999998887543221110 01111222333344455555554444444321 1111
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-H----HCCCCCCHHHHHHH
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM-G----KAGIKPDAHAYSIL 394 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~~~~~l 394 (637)
.+... ..+...|..+|.++.+.. |.. .+-+.|....+....-.+.-+- . ..+..|+ ....
T Consensus 580 ~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~ 644 (829)
T KOG2280|consen 580 SLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTA 644 (829)
T ss_pred HHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHH
Confidence 11111 122344555555544321 111 1222232222222222221111 0 0122222 2333
Q ss_pred HHHHHHcCCHHH----------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 395 AKGYVREQEPEK----------AEELLMTMIE-SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 395 ~~~~~~~g~~~~----------A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
...+.+.....- -+++.+.+.. .+..-.-.+.+--+..+...|+..+|.++-.+..- ||...|..
T Consensus 645 a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wL 720 (829)
T KOG2280|consen 645 ANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWL 720 (829)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHH
Confidence 444444433211 1222222222 12223334566667778889999999988777643 78889988
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
-+.+++..+++++-.++-++++. +.-|.-.+.+|.++|+.+||.+++.++.
T Consensus 721 k~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 89999999999887766555431 2345558889999999999999998763
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.4 Score=41.91 Aligned_cols=155 Identities=12% Similarity=-0.004 Sum_probs=109.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCh
Q 006640 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---GLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~ 193 (637)
.-..|+..+|-..++++++. .|.|...+...=.+|.-.|+...-...++++... +++-.+++-..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888875 4778888888888888999988888888888754 2222233334455566788999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 006640 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQNGEADQAEEV 270 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~ 270 (637)
++|.+.-++..+.+ +.|...-.++...+--.|+..++.+...+-...=-..+ ..-|=...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999888765 56777778888888888999999888765432210111 12233344456677899999999
Q ss_pred HHHH
Q 006640 271 IVEM 274 (637)
Q Consensus 271 ~~~~ 274 (637)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 9764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.94 E-value=14 Score=41.84 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWG 467 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~ 467 (637)
+|.+..+-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|++|+.+..++... -|.. +-..|..-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 334444444555666666666655421 122355677777788877777766531 1222 22556777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+...++.-+|-++..+-.. .|. ..+..|+++-.+++|.+.....
T Consensus 1009 L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 7778888887777655432 222 2344556666667776665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.3 Score=41.07 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 123 FNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----------------NMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
.+-.-..++.|.+.|+..|..+|+.|+..+-+-. +-+-+++++++|...|+.||..+-..|+.+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3444444455555555556556655555443321 223456666777767776776666666666
Q ss_pred HHhcCCh-HHHHHHHHHHHh
Q 006640 187 YGIAGKP-EESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~-~~A~~~~~~m~~ 205 (637)
+.+.+.. .+..++.-.|.+
T Consensus 168 FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 168 FGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hccccccHHHHHHHHHhhhh
Confidence 6655543 334444445544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.27 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 180 YNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=5.6 Score=36.40 Aligned_cols=199 Identities=16% Similarity=0.072 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEY-GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMN- 361 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 361 (637)
.........+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555555566666666555555431 113334444455555555555666666666655543222 111222222
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAGI--KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGWCSDGS 438 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 438 (637)
.+...|+++.+...+........ ......+......+...++.+.+...+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777777777777777755221 1233344444444667778888888888877653 33 36677777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 439 MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+.|...+....... |+ ...+..+...+...|..+++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888887643 33 34455555555566677888877777655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.34 E-value=13 Score=39.77 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Q 006640 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRA-----WCNEKNITEAWNVMHKMAA-------SGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~ 260 (637)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 467888888887766 44443333333 3456788889888888866 44 33345566677766
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--H
Q 006640 261 NG-----EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE---GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV--E 330 (637)
Q Consensus 261 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~ 330 (637)
.. +.+.|..++.+..+.|. |+.... +...|... .+...|.++|......|. +....+.+++-... -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 43 56678888888777664 333322 33333222 356788888888877763 22222222211111 2
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..+...|...+++.-+.+. |...--...+..+.. +..+.+.-.+..+...|
T Consensus 377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2355667777777766662 221212222223333 56666666655555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.23 E-value=3 Score=34.79 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=25.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
.....+.|++++|++.|+.+..+-+. -...+-..++.++.+.++++.|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444555555555555555443110 01223333444444455555555555444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.11 E-value=8.8 Score=37.09 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 006640 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVR--E----QEPEKAEELLMTMIESGF---HPNVVIFTTIISGWCSDGS--- 438 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--- 438 (637)
+.+.+++.+.+.|+..+..+|-+....... . .....|..+++.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555554444332222111 1 123456666666665421 2333344444333 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 439 -MDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQ--PWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 439 -~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+.|+++...+|..++
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 344555666666655544322 22222222221111 335566666666667776666665544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.01 E-value=5.2 Score=34.16 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+.++.+++..+++.+.-..+. ....-..-...++..|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666665544322 1122222233344566666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.3 Score=41.75 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLKTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 464 (637)
++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666777777666666654 55666667777777777777777666666543 3555555554444
Q ss_pred HHH
Q 006640 465 MWG 467 (637)
Q Consensus 465 ~~~ 467 (637)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.7 Score=39.23 Aligned_cols=154 Identities=11% Similarity=0.002 Sum_probs=111.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH----HHHHHHHHhcCC
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY----NVLVRAWCNEKN 228 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~~li~~~~~~g~ 228 (637)
-..|+..+|-..++++.+.- +.|..++...=.+|.-.|+.+.-...++++...- .+|...| ..+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 45688888888899988764 4478888888889999999999999999987652 2444333 344455668999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN---GRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
+++|++.-++..+.+ +.|...-.++...+.-.|++.++.+...+-...--..+ ..-|-...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998775 45677777888888889999999988765432211111 12233334456677999999999
Q ss_pred HHHHH
Q 006640 306 ARTMK 310 (637)
Q Consensus 306 ~~~~~ 310 (637)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.69 E-value=6 Score=34.05 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=26.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+..+..++|+..|..+.+.|..--++ ....+.....+.|+...|+..|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34455566666666666554331111 1122233344556666666666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.53 E-value=2.5 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCCHHHHHHHH
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-KPNLRTYNVLV 220 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li 220 (637)
.|+.-+.. .+.|++..|...|...++..+. -....+--|...+...|+++.|..+|..+.+...- +.-..++..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3566677777777777765422 11233445677777777777777777777664321 12246666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006640 221 RAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=9 Score=35.49 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNG---RTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+.+.|.+.|.+..|..-+++|++. .+.+. ..+-.+..+|...|-.++|.+.-.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 344455555555555555555544 21111 122333444445555554444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.44 E-value=7.7 Score=34.74 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++.-|.+-|...-+.+.-.|-...|.-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 3346788888888889999999999999998876543333333334333 468888888877777665422222233333
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------hhhHHHH
Q 006640 219 LVRAWCNEKNITEAWNVM-HKMAASGMKPDVVTYNT-IATAYAQNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~-~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
+.. ..-+..+|..-+ ++... .|..-|.. ++..|...=..+. +++++... -..+ ..+|--+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 322 334455555433 33332 23333332 3333332222222 22222221 1111 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 006640 290 ISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..-|...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66667777777777777776643
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.29 E-value=11 Score=36.21 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=60.4
Q ss_pred HHcCChhHHHHHHHHHHhCC--CCCCHH-----HHHHHHHHHHhcC-ChhHHHHHHHHHHHc--------CCCCCH----
Q 006640 83 IERGKPQEAQAIFNNLIEGG--HKPSLV-----TYTTLLAALTIQK-RFNSIHSIMSQVEEN--------GMDPDS---- 142 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~--~~~~~~-----~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 142 (637)
.+.|+.+.|..++.+..... ..|+.. .+..+.......+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876532 122221 1111222233444 666666666654432 112222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 143 -IFFNAVINAFSESGNME---EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 143 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
.+...++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24445555555555433 344444444332211 2334444445555556666666666666654
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.13 E-value=7.1 Score=33.61 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=60.0
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHHhcCC
Q 006640 82 LIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI-FFNAVI--NAFSESGN 157 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li--~~~~~~g~ 157 (637)
+++.|..++|+.-|..+...|...-++ ..-.+....+..|+...|...|+++-.....|-.. -...|= -.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345666777777777776655432111 11122233445566666666666655432222221 111111 12334455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+++...-.+-+...+-+.-...-..|.-+-.+.|++..|...|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 5555555544443333323334445555555666666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.05 E-value=2 Score=40.59 Aligned_cols=81 Identities=10% Similarity=0.215 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCCHHHHH
Q 006640 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE----GNVKPNLRTYN 217 (637)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~ 217 (637)
..++..++..+..+|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+++... -++.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345666777777777778887777777776554 6677777888888888888887777776541 13667666666
Q ss_pred HHHHHH
Q 006640 218 VLVRAW 223 (637)
Q Consensus 218 ~li~~~ 223 (637)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.83 E-value=6 Score=33.06 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGM--DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
+-.-.....+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.++++.|...+++.++..+......|-..+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33344455688999999999999987621 2234567788999999999999999999999987654445565555555
Q ss_pred HhcC
Q 006640 188 GIAG 191 (637)
Q Consensus 188 ~~~g 191 (637)
+...
T Consensus 93 ~~~~ 96 (142)
T PF13512_consen 93 SYYE 96 (142)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.78 E-value=8.4 Score=37.24 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCC-
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ--NG----EADQAEEVIVEMEHNGV---QPNGRTCGIIISGYCKEGK- 298 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 298 (637)
+++.+.+++.|.+.|+..+..+|.+....... .. ....|..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455667777777777666655543322222 11 24566777777766532 1223334444332 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCC--HhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 299 ---IKEALRFARTMKEYGVHPNL--VIFNLLIKGFVEIMD--RDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 299 ---~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
.+.+..+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24455566666665544422 222222222111111 12444555555555555444444433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.7 Score=37.69 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQ-----------PWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
++|+.-|++.+. +.|+. .++..+..++...+. +++|.+.|++..+ .+|+.+.|..-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444555555 44664 477777777765542 3445555555555 678888887666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.06 E-value=15 Score=35.29 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 354 ITYSTIMNAWSTAGFMD---KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566677777766544 455555566443 22235555555666667888888888888888752 21334444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HH----HHHHHHHHhcCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 006640 431 SGW---CSDGSMDRAIEVFDKMCEHGVSPNLK-TF----ETLMWGYSEARQ------PWRAEEILQIMKA-FGVHPQKST 495 (637)
Q Consensus 431 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~----~~l~~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~ 495 (637)
..+ ... ....|...++.+....+.|... .. ...+......++ .+...+++....+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 333 3456666666666443444442 11 111112222221 3333444443322 223333333
Q ss_pred HHHH-------HHHHHHcCCHHHHHHHHHHH
Q 006640 496 FLLL-------AEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 496 ~~~l-------~~~~~~~g~~~eA~~~~~~~ 519 (637)
-.++ +..+.+++++++|.++++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 34567888999999998754
|
It is also involved in sporulation []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.06 E-value=22 Score=37.14 Aligned_cols=389 Identities=12% Similarity=0.089 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+-..|..++.---...+.+.+..+++.++.. -|.. -.|......=.+.|..+.+.++|++-+. +++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4445666664444444556777777777753 3444 3566677767788999999999999887 4666778888777
Q ss_pred HHHH-hcCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 006640 185 KGYG-IAGKPEESVKLLDLMSREGNV-KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-- 260 (637)
Q Consensus 185 ~~~~-~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 260 (637)
..+. ..|+.+...+.|+.....-+. -.+...|-..|..-..++++.....++++.++. ....++..-.-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6554 457788888888888764321 234677888898888999999999999998864 22223222222211
Q ss_pred -------cCCHHHHHHHHHHHHH--------------------CCCCCCh--hhHHHHH-------HHHHHcCCHHHHHH
Q 006640 261 -------NGEADQAEEVIVEMEH--------------------NGVQPNG--RTCGIII-------SGYCKEGKIKEALR 304 (637)
Q Consensus 261 -------~g~~~~A~~~~~~~~~--------------------~~~~~~~--~~~~~li-------~~~~~~g~~~~A~~ 304 (637)
....+++.++-..... .+-+.+. ...+.+. .+|-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1223333333222211 0000000 0011111 11212222233333
Q ss_pred HHHHHHHcC---C----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006640 305 FARTMKEYG---V----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 305 ~~~~~~~~~---~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 377 (637)
.|+.-++.. + +++..+|..-+.--...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 333333221 1 234568888888888899999888888876431 11223344444444455588888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHC
Q 006640 378 DMGKAGIKPDAHAYSILAKGY-VREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAI---EVFDKMCEH 452 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~ 452 (637)
...+-..+ +......+-..+ -..|+++.|..+++.+.+.- |+.+ .-..-+....+.|+.+.+. .++....+.
T Consensus 356 ~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 356 RACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred hhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 76554332 322222333333 35679999999999998762 4433 2233344556778888777 333333322
Q ss_pred CCCCCH--HHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006640 453 GVSPNL--KTFETLMW-GYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 453 ~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 507 (637)
...+.. ..+.-..+ .+.-.++.+.|..++.++.+ +.|+ ...|..+++.+...+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 111111 11112222 23346788889999988876 4444 456777777766665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.58 Score=28.50 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.87 E-value=28 Score=37.97 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=94.6
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (637)
+.+.+.|++++|..-|-+-+.. +.| ..++.-+....+...--..++.+.+.|+ .+...-+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchH
Confidence 3445789999999888776632 222 3345555555566666677888888884 56666778999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
.-.++.+... .|.. .+-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|++++..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 8777766654 2211 12245567777788888888777665432 23333333 34578899999998876
Q ss_pred H
Q 006640 240 A 240 (637)
Q Consensus 240 ~ 240 (637)
.
T Consensus 517 p 517 (933)
T KOG2114|consen 517 P 517 (933)
T ss_pred C
Confidence 3
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.34 Score=29.11 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 006640 420 HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A 442 (637)
|.|..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555444
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.69 E-value=21 Score=36.37 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA-LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.|+..|..-+..+-+.+.+.+.-.+|.+|+... +.++..|-....- +-.+.+.+.|+.+|.+.++.+ +..+..|-..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHH
Confidence 366666666666666666667777777766531 2233444333222 222233666777666666654 3334444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.68 Score=43.98 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 006640 433 WCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
|.++|.+++|+..|...... .| |++++..-..+|.+..++..|..-.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 45555555555555555442 23 5555555555555555554444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=15 Score=34.16 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=24.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
..-|.+.|.+..|..-+++|.+. .+-. ...+-.+..+|.+.|..++|...-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 33455555555555555555553 1111 1233344445555555555555433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.40 E-value=4 Score=36.02 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQPWRAEEILQIMKA---FGVHPQKS---- 494 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~---- 494 (637)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+.....+... .|-.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356667777778888888888888777664444433 466677777777888777777666642 22222221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 495 TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.|..+ .+...|++.+|-+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 2345677887777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.31 E-value=8.9 Score=31.39 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
.......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455555566666666666666666542 245666666666666677776666666666666665
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.89 Score=27.05 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.85 Score=27.75 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
|+.|.+.|.+.|++++|+.+|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777776643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.98 E-value=14 Score=31.94 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=42.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 96 NNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTP 175 (637)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 175 (637)
+.+.+.+++|+...+..++..+.+.|++..... ++..++-+|.......+-.+. +....+.++--+|..+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH----
Confidence 334444556666666666666666665543332 333344444433332221111 1122233332233221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006640 176 TTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
=...+..++..+...|++-+|+++....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555555556666665555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.74 E-value=18 Score=32.60 Aligned_cols=63 Identities=11% Similarity=-0.101 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.+||.|.--+...|+++.|.+.|+...+.+ |....+...-.-++.--|++.-|.+-|...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 3455555555566666666666666665543 11222222222222234555555554444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.26 E-value=1.3 Score=26.34 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.06 E-value=54 Score=37.43 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCC
Q 006640 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT--YSTIMNAWSTAGF 368 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 368 (637)
+.+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.++..+..++... .|... -..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333345555555555544421 122345566667777776666655331 12222 2455566666677
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTM 414 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (637)
.-+|-++..+.... ..-.+..|++...|++|..+-...
T Consensus 1015 h~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 66666666655432 112334455666666666655443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.99 E-value=32 Score=37.43 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=93.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH---
Q 006640 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWST--- 365 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 365 (637)
...+.-.|+++.|++++-.. .+...+.+.+...+.-| |-+......-..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45566789999999988762 11233444444443332 22221111112222211 11222567788888876
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHH-----------HHHHH-HHHCCCCC-CHHHH---HH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILA-KGYVREQEPEKAE-----------ELLMT-MIESGFHP-NVVIF---TT 428 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-----------~~~~~-~~~~~~~~-~~~~~---~~ 428 (637)
..+...|.+.+--+....-+.....+...+ ......++++.-+ -++++ ..=.++.. +.... ..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 356777877777665432111122222222 2222333322211 11111 00001122 22222 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC-----------hhHHHHHHHHHHHCC-----CCC
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG-YSEARQ-----------PWRAEEILQIMKAFG-----VHP 491 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~-----------~~~A~~~~~~m~~~g-----~~p 491 (637)
...-+...|++++|+.+|.-+.+.. .=....+.++.- ...... ...|..+.+.....+ +.+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3334667899999999888765421 011234444432 222222 223444433332111 222
Q ss_pred C-HHHHHHHHHH-----HHHcCCHHHHHHHHHHHh
Q 006640 492 Q-KSTFLLLAEA-----RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 492 ~-~~~~~~l~~~-----~~~~g~~~eA~~~~~~~~ 520 (637)
. ..++..|+++ +.+.|++++|.+.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 2 3355555543 668899999999999985
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=26 Score=33.63 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 352 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
+..+-...+.++.+.++ +.++..+-.+.+ .++..+-...+.++.+.+ .-..+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33344444444444443 234444444433 123333333333333322 12234444444432 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 55555554 33444444443321 1 122344444454443 3444444444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.85 E-value=11 Score=33.24 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
+.+.|++++|..-|.+.+..- ++.. +.|..-..++.+.+.++.|+.-..+.++.+.. ....+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 455566666666665555541 2211 22333333455555555555555555553321 1122333344455555
Q ss_pred ChhHHHHHHHHHHH
Q 006640 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|++-|+++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.8 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 495 TFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
.+..+..++...|++++|++.+++.....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666654443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.41 E-value=10 Score=33.53 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 252 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444444444444444443322111 122333344444444444444443333
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.6 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.25 E-value=52 Score=35.33 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHHh
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKG-----YGIAGKPEESVKLLDLMSR-------EGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~~li~~~~~ 225 (637)
...|.+.++...+.| +......+..+ +....+.+.|+..|..+.+ .+ ......-+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhc
Confidence 467888888888876 44444333333 3455689999999998876 33 33456677777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----
Q 006640 226 EK-----NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK---- 295 (637)
Q Consensus 226 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 295 (637)
.. +.+.|+.++.+.-+.| .|+.......+..... ..+...|.++|....+.|.. ..+-.+..+|..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 6778999999988877 3444433222222222 24678999999999888752 223333333322
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..+.+.|..++.+.-+.| .|....-...+..+.. +..+.+.-.+..+.+.+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 346888999999998877 3332222222233333 66666666666655554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.85 E-value=20 Score=30.19 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
.++.+++..+++.|.-..+. ....-..-.-.++..|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666666554322 1111222223345566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.02 Score=48.81 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=55.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
++..+.+.+.+......++.+...+...+....+.++..|++.++.+....+++ ..+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 466777778888888888888876555667788888888888877677666655 1112334456666666777
Q ss_pred HHHHHHHHHHHH
Q 006640 158 MEEAMDTFWKMK 169 (637)
Q Consensus 158 ~~~A~~~~~~m~ 169 (637)
++.|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 766666665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.69 E-value=23 Score=30.73 Aligned_cols=131 Identities=10% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006640 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.++.+.+.+++++...+..++..+.+.|++.. +..+.+.++-+|.......+-.+ .+....+.++=-+|.++-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 34445556777777778888888877777554 33344444445554444333222 123333444444443320
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+|+-.
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 013455566666777777777776654322 1122233455555555544444444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.98 E-value=24 Score=30.27 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 399 VREQEPEKAEELLMTMIESGFHPNVVIF-TTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+.++.+++..++..+.-. .|..... ..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4566777777777776654 3433222 22233456777777777777777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.72 E-value=13 Score=35.39 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
+.++++.++..=+..|+-||.++++.+++.+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555544555555555555555555555555555555544443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.33 E-value=68 Score=35.00 Aligned_cols=439 Identities=10% Similarity=0.070 Sum_probs=215.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHH--
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIE-GGHKP--SLVTYTTLLAALT-IQKRFNSIHSIMSQVEENGMDPDSI-- 143 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 143 (637)
..+..|-.||.. |++.++.+.+ ...+| ...++..+...+. ...+++.|...+.+.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345556566544 4555666663 23333 2345556666665 5678999999998875543222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCC--CCCCH
Q 006640 144 ---FFNAVINAFSESGNMEEAMDTFWKMKESG----LTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGN--VKPNL 213 (637)
Q Consensus 144 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ 213 (637)
....++..+.+.+... |....++..+.- ..+-...+..+ +..+...++...|++.++.+..... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234456666665555 888888766531 11112223333 3333344789999999988866432 12334
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH----
Q 006640 214 RTYNVLVRAWC--NEKNITEAWNVMHKMAASG---------MKPDVVTYNTIATAYA--QNGEADQAEEVIVEMEH---- 276 (637)
Q Consensus 214 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~---- 276 (637)
.++..++.+.. ..+..+++.+.++.+.... ..|-..+|..+++.++ ..|+++.+...++++..
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44455555443 4565677777777664321 1234566776666554 56777677766655432
Q ss_pred ---CC-C---C-------------------CChhhH---------HHHHH--HHHHcCCHHHHHHHHH-------HHH-H
Q 006640 277 ---NG-V---Q-------------------PNGRTC---------GIIIS--GYCKEGKIKEALRFAR-------TMK-E 311 (637)
Q Consensus 277 ---~~-~---~-------------------~~~~~~---------~~li~--~~~~~g~~~~A~~~~~-------~~~-~ 311 (637)
.. . . +....| .-++. .++..+..++|.++++ +.. .
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 10 0 0 111111 11122 2223344435544444 444 1
Q ss_pred cCCCC--C------HHHHHHHHHH---------HHHcCCHhHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHc
Q 006640 312 YGVHP--N------LVIFNLLIKG---------FVEIMDRDGVDEVLALMKEFRV-NPD-------VITYSTIMNAWSTA 366 (637)
Q Consensus 312 ~~~~~--~------~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~ 366 (637)
....+ . ...|...+.. ..-.+++..+...++.+.+... .|+ +.++....-.+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 11111 1 1122222222 2345788889888888765321 111 22222333344567
Q ss_pred CChHHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHHHcC--CHHH--HHHHHHHHHHC---CCCCCHHHHHHH
Q 006640 367 GFMDKCKEIFD--------DMGKAGIKPDAHAYSIL--AKGYVREQ--EPEK--AEELLMTMIES---GFHPNVVIFTTI 429 (637)
Q Consensus 367 g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l 429 (637)
|+++.|...|. .....+...+..++..| +..+...+ ..++ +.++++.+... ....+..++..+
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999998 44444444444444332 22222222 2233 66677665432 112233445444
Q ss_pred H-HHHHhcC--CHHHHHHHHHHHHH-C--CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC--HHHHH
Q 006640 430 I-SGWCSDG--SMDRAIEVFDKMCE-H--GVSPNLK---TFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ--KSTFL 497 (637)
Q Consensus 430 i-~~~~~~g--~~~~A~~~~~~m~~-~--~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~--~~~~~ 497 (637)
+ .++...- ...++...+.+..+ . ....+.. +++.+...+. .|...|.......... ..-.|| ...|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3 3333211 12244444433321 1 1111222 2232222333 6777776555443321 111233 33442
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHH
Q 006640 498 -----LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 498 -----~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.+.+.+...|+.++|.....+.
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 3445688899999999887665
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.13 E-value=4.6 Score=30.88 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+..+..+-++.+..+.+.|+.....+.+.+|.|.+++.-|.++++.++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666667778888888888888888888888888888877644
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.74 E-value=2.5 Score=26.32 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.59 E-value=57 Score=33.52 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 006640 93 AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 171 (637)
.+|+....+ .+.|+..|..-+.-+-+.+.+.+...+|.+|+... |.++..|-....- |-..-+++.|..+|..-.+.
T Consensus 92 ~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 92 FLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 344444432 33466666666665555555666666666665543 3334444332222 22223366666666665554
Q ss_pred C
Q 006640 172 G 172 (637)
Q Consensus 172 ~ 172 (637)
+
T Consensus 170 n 170 (568)
T KOG2396|consen 170 N 170 (568)
T ss_pred C
Confidence 4
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.27 E-value=3.1 Score=25.88 Aligned_cols=26 Identities=12% Similarity=0.425 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555566666665555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=45 Score=32.04 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+.++...|+. +|+..+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444442 34444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.66 E-value=34 Score=35.81 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=103.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (637)
.+.-.|+++.|-.++..+. ....+.+++-+.++|-.++|+++ .+|..-- .....+.|+++.
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHH
Confidence 3345678877766554442 23456666667777777766653 3333221 233457889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+-....
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 888776653 567799999999999999999999877643 5677777888888776666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
+.|. .|. -..+|...|+++++.+++..-
T Consensus 720 ~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 6663 232 233566789999998887554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.48 E-value=34 Score=35.84 Aligned_cols=150 Identities=12% Similarity=0.141 Sum_probs=101.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006640 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
-.|+++.|..++..+. ....+.++..+.+.|..++|+.+- +|+... .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 3466766665443221 345667777788888877776542 232221 223357899999988
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 199 LLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 199 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
+..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 659 la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 659 LAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 87654 3667799999999999999999999887654 4457777888888776666666666665
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 279 VQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 279 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
. .| .. .-+|...|+++++.+++..-
T Consensus 723 ~-~N-~A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K-NN-LA----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-cc-hH----HHHHHHcCCHHHHHHHHHhc
Confidence 4 23 22 23567789999998887655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.33 E-value=21 Score=31.71 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=37.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 363 WSTAGFMDKCKEIFDDMGKAGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 438 (637)
+...|++++|..-|...+..-.... ...|..-..++.+.+.++.|++--.+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 3444555555555555544321111 1222222334445555555555544444432 1122222222334444555
Q ss_pred HHHHHHHHHHHHH
Q 006640 439 MDRAIEVFDKMCE 451 (637)
Q Consensus 439 ~~~A~~~~~~m~~ 451 (637)
+++|+.-|+++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.60 E-value=15 Score=32.74 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhcCC
Q 006640 458 LKTFETLMWGYSEARQ 473 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~ 473 (637)
+..+.+|++.+.+.|+
T Consensus 178 ~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 178 PEILKSLASIYQKLKN 193 (203)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3333333333333333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.57 E-value=5.6 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+..+-++.+..+.+.|+.......+.+|.|.+++.-|.++++.++.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 455555666677788888888888899999999999999998887653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.53 E-value=86 Score=34.16 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (637)
++.+.+.+.+++|+++-..... ..| -...+...|..+...|++++|-...-.|.. .+..-|..-+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 7888999999999988776653 333 234567778888888899888887777763 3455566555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
++... ++.-+.......+...|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 54432 23333332223455667777766665
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.16 E-value=65 Score=32.51 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 357 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
..|+.-|...|++.+|.+..+++--- +-....++.+++...-+.|+-...+.+++..-+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666666666655554211 111345555666666666665555555555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.66 E-value=17 Score=32.47 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=61.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG--NVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+.. +-.+|+..+.+|++.+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 678888888888776657777777777776 678999999998887642 12578999999999999999999
Q ss_pred HHH
Q 006640 231 EAW 233 (637)
Q Consensus 231 ~A~ 233 (637)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 885
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.59 E-value=39 Score=29.61 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG----S-------MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
+++|..-|++.+... |....++..+..+|...+ + +++|...|+++.+ ..|+..+|..-+..+.
T Consensus 51 iedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---
Confidence 344555555555542 333456666666665443 2 5556666666665 4689999988777663
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 006640 473 QPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~ 490 (637)
+|-++..++.+.+..
T Consensus 125 ---kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 ---KAPELHMEIHKQGLG 139 (186)
T ss_dssp ---THHHHHHHHHHSSS-
T ss_pred ---hhHHHHHHHHHHHhh
Confidence 467777777665544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.51 E-value=15 Score=34.94 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 172 GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN--VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
|.+.++.+...++..-....+++.+...+-++..... ..|+ .+-.+.++.+. .-+.++++.++..=+.-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555556667777776666654210 0011 01111222222 234556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 250 TYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+++.+++.+.+.+++..|.++.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777766666655544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.01 E-value=3.2 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555443
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.01 E-value=52 Score=30.70 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPDV---VTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
...+++|+.-|++.++...+... ...-.++..+.+.+++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566666666666654222222 223345556666666666666665553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 4e-17
Identities = 34/363 (9%), Positives = 98/363 (26%), Gaps = 16/363 (4%)
Query: 168 MKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227
+++ +P L++ + + + + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH-SQAQLSGQQQRLLAFFKCCLLTD 141
Query: 228 NITEAWNV---MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284
+ A ++ H + YN + +A+ G + V+ ++ G+ P+
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 285 TCGIIISGYCKEGKIKEAL-RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343
+ + ++ + + R M + G+ + +L+ V +V
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 344 MKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE 403
P + S ++ ++ + + + V
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ-LHMELASRVCVVS 320
Query: 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463
EK + + + + ++ RA+ E V +
Sbjct: 321 VEKPTLPSKEVKHARKTLKTLR-------DQWEKALCRALRETKNRLEREVYEGRFSLYP 373
Query: 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523
+ E +LQ+++A + T L + R ++ +S
Sbjct: 374 FLCLLDEREV---VRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQAL 430
Query: 524 RTN 526
+ +
Sbjct: 431 QNH 433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 7e-15
Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 5/186 (2%)
Query: 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSI--- 129
+ +L+ + QA + + + H +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 130 MSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189
+ +NAV+ ++ G +E + + +K++GLTP +Y ++ G
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 190 AGKPEESV-KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248
+ ++ + L+ MS+EG L VL+ + V + P
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQAL-FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 249 VTYNTI 254
V + +
Sbjct: 272 VNTSKL 277
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 3e-09
Identities = 28/276 (10%), Positives = 71/276 (25%), Gaps = 10/276 (3%)
Query: 5 AEGKAFLQTDDKYQSGSTIVKKGWGQMIPAKKNNPGEKKQL-YSNSKPTDSQPQTHCSFC 63
A + + + P + L + K + Q
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 64 MNKESCRTVRSMTKLMNSLIERGKPQEAQAIFN---NLIEGGHKPSLVTYTTLLAALTIQ 120
+ + + + + A + + +L Y ++ Q
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFW-KMKESGLTPTTST 179
F + ++ V++ G+ PD + + A + ++ +M + GL
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239
L+ A + K+ S + P + T +L + + K+
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL-----RDVYAKDGRVSYPKL 293
Query: 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275
+ + A E+ + +
Sbjct: 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 5e-08
Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 4/157 (2%)
Query: 373 KEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432
+ D +A P + L + + + + ++
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 433 WCSDGSMDRAIEVFDK---MCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV 489
+ A + + L + +M G++ +L ++K G+
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 490 HPQKSTF-LLLAEARRATGLTKEAKRILSKIKNKERT 525
P ++ L R +R L ++ +
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 53/437 (12%), Positives = 128/437 (29%), Gaps = 103/437 (23%)
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S + +D + + T + W ++ K ++ + Y +
Sbjct: 47 SKEEIDHIIMSKD--AVSGTLRLF---WTLLSKQE---EMVQKFVEEVLRIN---YKFLM 95
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC-----KEGKIKEALRFARTMK 310
+ + + + + + + + + Y K+++AL R
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLKLRQALLELR--- 148
Query: 311 EYGVHPNLVIFNLLIKGFVEIMDRDG----VDEVLALMKEFRVNPDVITYSTIMNAWSTA 366
N++I + G G +V K I + + N S
Sbjct: 149 ---PAKNVLIDGV--LGS-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426
++ +++ + H+ +I + + L +++S + N ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLL- 248
Query: 427 TTIISG-WCSDGSMDRAIEVFDKMC-------EHGVSPNLK-------TFETLMWGYSEA 471
++ + +A F+ C V+ L + + +
Sbjct: 249 --VLLNVQNA-----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 472 RQPWRAEEILQIMKAFGVHPQKSTFLLLAEAR----RATGLTKEAKRI-LSKIKNKERTN 526
+ +L +K PQ L E R + E+ R L+ N + N
Sbjct: 302 ----EVKSLL--LKYLDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 527 EMEAEE--DIPVESLE-----RLYHKEATTASYPNLLQIP---------NVVSSDQKGSA 570
+ + + LE +++ + + +P IP +V+ SD
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 571 AALKKGRMLLRDADSSL 587
L K ++ + S
Sbjct: 409 NKLHKYSLVEKQPKEST 425
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 64/444 (14%), Positives = 137/444 (30%), Gaps = 148/444 (33%)
Query: 62 FCMNKESCRTVRSMTKLMNSLIERGKP----------------QEAQAIFNNLIEG-GHK 104
F +N ++C + ++ +++ L+ + P QA L++ ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 105 PSL-----VTYTTLLAALTIQ-K-----RFNSIHSIMSQV---------EENGMDPD--- 141
L V A + K RF + +S + PD
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 142 SIFFNA------------------VINAFSESGNMEEAMDT--FWK-MKESGLTPT-TST 179
S+ ++ +ES + + + T WK + LT S+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 180 YNTLIKGYGIAGKPEESVKLLDLMS--REGNVK-PNLRTYNVLVRAWCNEKNITEAWNVM 236
N L +P E K+ D +S + P +L W + ++ V+
Sbjct: 363 LNVL--------EPAEYRKMFDRLSVFPP-SAHIP----TILLSLIWFDVIK-SDVMVVV 408
Query: 237 HKMAASGM-----KPDVVTYNTIATAYAQNGEADQA-EEVIVE-------MEHNGVQPNG 283
+K+ + K ++ +I E + A IV+ + + + P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP- 467
Query: 284 RTCGIIISGY-----------CKEGKIKEA-------LRF-ARTMKEYGVHPNLV--IFN 322
+ Y + + RF + ++ N I N
Sbjct: 468 -----YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 323 LLI-----KGFVEIMDRDGVDE-VLALMKEF--RVNPDVIT--YSTIMNAWSTAGFMDKC 372
L K + I D D E ++ + +F ++ ++I Y+ ++ M +
Sbjct: 523 TLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR----IALMAED 576
Query: 373 KEIFDDMGKAGIKPDAHAYSILAK 396
+ IF++ A+ + +
Sbjct: 577 EAIFEE-----------AHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 637 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.97 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.74 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.42 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.25 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.48 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.42 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.37 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.3 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.81 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.12 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.02 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.3 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.21 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.09 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.31 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.41 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.15 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.22 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.89 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.15 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.41 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.89 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.73 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.05 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.72 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.11 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.67 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.67 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=359.18 Aligned_cols=441 Identities=8% Similarity=-0.008 Sum_probs=368.6
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
+.+++..|+.++..+.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+|+++... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 346788999999999999999999999999985 4678899999999999999999999999988653 789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 006640 148 VINAFSESGNMEEAMDTFWKMKES---------------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 212 (637)
++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh
Confidence 999999999999999999953321 223358899999999999999999999999999875 334
Q ss_pred HHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 213 LRTYNVL--------------------------------------VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 213 ~~~~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
...+..+ +..|.+.|++++|.++|+++.+. +++..+|+.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 5554444 44555778888999999888765 5788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
+.+|.+.|++++|.++|+++.+.+. .+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|..++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 9999999999999999998887653 467888889999999999999999999888654 56788888888999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTM 414 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (637)
++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998887754 3467888899999999999999999999888764 457888888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006640 415 IESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 415 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8764 667888999999999999999999999988765 55677 6788899999999999999999998887643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 489 VHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 489 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..+|..++.+|.+.|++++|.++++++...
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 225678888899999999999888888776544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=351.79 Aligned_cols=458 Identities=10% Similarity=-0.008 Sum_probs=370.5
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 82 LIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEA 161 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 161 (637)
+...|.+..+...+..+. .+++..|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 455677777777776653 468899999999999999999999999999864 57889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHHhcC
Q 006640 162 MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG--------------NVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g 227 (637)
..+|+++... +++..+++.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998653 5689999999999999999999999999533221 12345899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH--------------------------------------HHHHHHcCCHHHHHH
Q 006640 228 NITEAWNVMHKMAASGMKPDVVTYNTI--------------------------------------ATAYAQNGEADQAEE 269 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~A~~ 269 (637)
++++|+++|++|.+.+. .+...+..+ +..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999999988642 233443333 455667889999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 006640 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
+|+++.+. +++..+++.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998765 4789999999999999999999999999998775 4577889999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTI 429 (637)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (637)
+.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4578899999999999999999999999998753 4468899999999999999999999999999875 6688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAF----GVHPQ--KSTFLLLAEAR 503 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~ 503 (637)
+.+|.+.|++++|+++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999988643 37889999999999999999999999999764 67888 78999999999
Q ss_pred HHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccc
Q 006640 504 RATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
.+.|++++|.++++++....|. +.. .+..|+++|...|+|++|....+++.+
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~-----------------------~~~--~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTN-----------------------DAN--VHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSC-----------------------CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-----------------------ChH--HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999888655432 221 234555566666666666555554443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-27 Score=244.47 Aligned_cols=382 Identities=12% Similarity=0.046 Sum_probs=224.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
+...+.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455666777777777777766542 2345555556666666777777777776666654 5566667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|...|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|...|+
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777766665322 44556666666666666666666666666543 3344555556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~ 202 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------------------------------------PNF 202 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------------------------TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------CCc
Confidence 665442 2234455555555555555555555555554432 223
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
...+..+...+...|++++|...++...... +.+..++..+..+|...|++++|+..|+++.+.. +.+..++..++..
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444444444445555555555554444432 1244555555556666666666666666665543 2245556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|+..|+++.+.. +.+..++..++.++.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666553 5556666666666666666666666666666542 22455666666666666666666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006640 478 EEILQIMKAFGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 507 (637)
...|+++.+ +.|+ ...|..+..++...|
T Consensus 359 ~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 666666655 3443 345556665555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-27 Score=244.17 Aligned_cols=365 Identities=13% Similarity=0.016 Sum_probs=309.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...++...+.. |.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence 45566778888888888887776433 55667777778888888888888888887764 5678888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+..+ .+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887753 33466788888889999999999999988887642 3456677788888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+..+|..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 98764 55678899999999999999999999999988753 467889999999999999999999999998764 3468
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.++..++..|.+.|++++|...|+++.+.+ +.+..+|..++.++...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999874 5678899999999999999999999999999864 34788999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|...++++.+ ..|+ ...+..++.++.+.|++++|...++++....|.
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999976 4455 668999999999999999999999999887664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=253.85 Aligned_cols=202 Identities=16% Similarity=0.286 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHH
Q 006640 128 SIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK---------PEESV 197 (637)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~ 197 (637)
.+.+++.+.+..+.+ .+++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 344444444444333 34566666666667777777777777666666677777777766665543 46677
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
++|++|...| +.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.
T Consensus 91 ~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 91 DIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776665 667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006640 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 330 (637)
|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=253.37 Aligned_cols=204 Identities=16% Similarity=0.190 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------Hh
Q 006640 266 QAEEVIVEMEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD---------RD 335 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~ 335 (637)
.+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555556555554333 34667777777777777777777777777777777777777777766544 23
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445555544444455555555555555555555555555555444444555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 416 ESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 416 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 444455555555555555555555555555555544444455555544444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-24 Score=225.73 Aligned_cols=443 Identities=11% Similarity=0.011 Sum_probs=297.8
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
.+..|..+...+.+.|++++|+..|++++... |+..+|..+..++...|++++|...++++++.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35567778899999999999999999999854 799999999999999999999999999999876 677889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+|.+.|++++|...|+++.+.++. +......++..+........+.+.+..+...+.. |+...+..-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCc
Confidence 999999999999999999988643 4444445555444433333333333222211101 11111110000000000111
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----C--CC------CCChhh
Q 006640 231 EAWNVMHKMAASGM---------KPDVVTYNTIATAYAQ---NGEADQAEEVIVEMEH-----N--GV------QPNGRT 285 (637)
Q Consensus 231 ~A~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~ 285 (637)
....+...+..... +.+...+..+...+.. .|++++|...|+++.+ . .. +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111100 1124444444444443 6778888888877766 2 11 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
+..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+... .+..++..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHH
Confidence 6777777888888888888888877664 2367777777888888888888888888776543 356677777888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.|++++|...++.+.+.. +.+..++..+...|...|++++|..+++++.+.. +.+..+|..+...+...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888877764 3356777778888888888888888888877653 45667778888888888888888888
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 446 FDKMCEHGVS-PN----LKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 446 ~~~m~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|+++.+.... ++ ...+..+..++.. .|++++|...++++.+. .| +...+..++.++.+.|++++|...+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8887753211 11 3377777778888 88888888888887663 33 3556777888888888888888888
Q ss_pred HHHhhcccc
Q 006640 517 SKIKNKERT 525 (637)
Q Consensus 517 ~~~~~~~~~ 525 (637)
+++....|.
T Consensus 473 ~~a~~~~~~ 481 (514)
T 2gw1_A 473 EESADLART 481 (514)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHhccc
Confidence 888776653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-23 Score=221.45 Aligned_cols=435 Identities=9% Similarity=-0.008 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+......+...|++++|...|+++++.. |+..++..+..+|.+.|++++|...|+++.+.++. +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4456777788888999999999999998875 68889999999999999999999999998887643 67788889999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
|...|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999988865 345555555555554444444444444333222212222111111111111111111
Q ss_pred HHHHHHHHHHCCC---------CCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHH
Q 006640 267 AEEVIVEMEHNGV---------QPNGRTCGIIISGYCK---EGKIKEALRFARTMKE-----YGV--------HPNLVIF 321 (637)
Q Consensus 267 A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~ 321 (637)
...+...+..... +.+...+......+.. .|++++|+.+|+++.+ ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1224555555555554 8999999999999987 311 2245688
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006640 322 NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
..+...+...|++++|...++.+.+..+. ...+..+...+...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999887643 8889999999999999999999999998864 45778899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006640 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
|++++|...++++.+.. +.+..++..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999875 56788999999999999999999999999987642 35678999999999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHH
Q 006640 482 QIMKAFGV-HPQ----KSTFLLLAEARRA---TGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERL 542 (637)
Q Consensus 482 ~~m~~~g~-~p~----~~~~~~l~~~~~~---~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l 542 (637)
+++.+... .++ ...+..++.++.. .|++++|...++++....|.. ...++.+.|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99865221 122 3488899999999 999999999999998776643 2357888999999999
Q ss_pred HhhhccCCC
Q 006640 543 YHKEATTAS 551 (637)
Q Consensus 543 ~~~~~~~~~ 551 (637)
+++.|++..
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 999988755
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-23 Score=212.53 Aligned_cols=341 Identities=12% Similarity=0.086 Sum_probs=192.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 90 EAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 169 (637)
.+...|.++... .+.++..+..+...+...|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444442 13356667777777777777777777777776654 5566777777777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL---RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 246 (637)
+.++. +..++..+..+|...|++++|.+.|+++.+.. +.+. ..+..++..+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH---------------------
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH---------------------
Confidence 65433 56667777777777777777777777776643 2333 555555433100
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
..+..+...+...|++++|...|+++.+... .+..++..++.+|.+.|++++|+..|+++.+.. +.+..+|..+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 0011112223444444444444444443321 233444444444444444444444444443332 233444444444
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HH
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYS------------TIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AH 389 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~ 389 (637)
.|...|++++|...++.+.+..+ .+...+. .+...|...|++++|...|+.+.+.. |+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 44444444444444444443321 1222222 23667777888888888888877642 33 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
.+..++..+.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...|+++.+..+. +...+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 67777788888888888888888877653 556778888888888888888888888888774322 344555555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=210.27 Aligned_cols=331 Identities=13% Similarity=0.083 Sum_probs=222.7
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.++..|..+...+.+.|++++|+.+|++++... +.+..+|..+..++...|++++|...|+++++.+ +.+..++.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 456788999999999999999999999999998753 4578999999999999999999999999999986 67789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHhcCChHHHHHHHHHHHhcCCCCC
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTT---STYNTLIKG------------YGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
.+...|.+.|++++|...|+++.+..+. +. ..+..++.. +...|++++|+..|+++.+.. +.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 9999999999999999999999987533 44 677777555 555566666666666655543 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS 291 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 291 (637)
+..++..++.+|.+.|++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++..... .+...+..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHH
Confidence 55555566666666666666666666555432 23455555555555555555555555555554321 11222222100
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcC
Q 006640 292 GYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD----VITYSTIMNAWSTAG 367 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g 367 (637)
. . ....+..+...+...|++++|...++.+.+..+. + ...+..+..++.+.|
T Consensus 254 ~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 254 V--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp H--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTT
T ss_pred H--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCC
Confidence 0 0 0001122255666667777777777766654321 2 335666777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
++++|+..++.+.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 310 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777776643 3456777777777777788888888777777653 44455555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-22 Score=214.32 Aligned_cols=434 Identities=11% Similarity=0.027 Sum_probs=330.0
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
....|..+...+.+.|++++|+..|++++... +.++.+|..+..++...|++++|...++++++.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 46778889999999999999999999999853 4588999999999999999999999999999886 678899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHh
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG-----NVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~ 225 (637)
.+...|++++|...|+.+ ... |+ .....+..+...+...+|...++.+.... ...|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999999999999999743 322 22 22333455566667788999999886531 112333 33444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC-------hhhHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYA--------QNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
..+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 66666665554433322 22211 2233332222 235789999999998876432 2 2346677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 006640 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFM 369 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 369 (637)
...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 788889999999999999998874 558888899999999999999999999988865 34788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
++|...++++.+.. +.+..++..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|+..|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998864 3467889999999999999999999999998874 667789999999999999999999999998
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006640 450 CEHGV-----SPNLKTFETLMWGYSEA----------RQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 450 ~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
.+... ......+..+..++... |++++|...|+++.+. .| +...+..++.++.+.|++++|.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 76421 11223345556677777 9999999999999773 34 4568889999999999999999
Q ss_pred HHHHHHhhcccc
Q 006640 514 RILSKIKNKERT 525 (637)
Q Consensus 514 ~~~~~~~~~~~~ 525 (637)
..++++....|.
T Consensus 483 ~~~~~al~~~~~ 494 (537)
T 3fp2_A 483 ELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhCCC
Confidence 999999877664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=213.97 Aligned_cols=433 Identities=9% Similarity=0.015 Sum_probs=290.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
....+..+...+...|++++|...|+++++.. +.+..++..+..+|.+.|++++|++.|+++.+.++. +..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 34667778888889999999999999988876 668888999999999999999999999998887644 6788888899
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG------MKPDVVTYNTIATAYA 259 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~ 259 (637)
++...|++++|+..|+.+... |+ .....+..+...+...+|...++.+.... ..|+. ..+..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN----GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcC----CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 999999999999998644221 22 22223445555666778888888886531 22333 3344455
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 006640 260 QNGEADQAEEVIVEMEHNGVQPNG-RTCGIIISGYCKE--------GKIKEALRFARTMKEYGVHPNL-------VIFNL 323 (637)
Q Consensus 260 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ 323 (637)
...+.+.+...+...... .+.. .....+...+... |++++|+.+++++.+.. +.+. .++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHH
Confidence 666666665554333221 1111 1233333333222 36788888888887654 2232 24556
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 324 LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE 403 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (637)
+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 6667777888888888888887754 447777778888888888888888888877654 3467778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+++|...|+++.+.. +.+..+|..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|...|++
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887764 45567788888888888888888888888877542 2556777788888888888888888888
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhcc
Q 006640 484 MKAFG-----VHPQKSTFLLLAEARRAT----------GLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEAT 548 (637)
Q Consensus 484 m~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~ 548 (637)
+.+.. .......+.....++.+. |++++|...++++... .|+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------~p~ 460 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----------------------DPR 460 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-----------------------CTT
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-----------------------CCC
Confidence 75421 111122244445566666 7777777777666544 444
Q ss_pred CCCCCCcccccccccccCCCchhhhhhhhcccccc
Q 006640 549 TASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDA 583 (637)
Q Consensus 549 ~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~ 583 (637)
+.. .+..|+.+|...|++++|....+...+...
T Consensus 461 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 461 SEQ--AKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 332 245667777777777777766655544443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-19 Score=176.57 Aligned_cols=96 Identities=13% Similarity=0.029 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 108 VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 108 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+..+. +...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 344445555555555555555555555443 334455555555555555555555555555544322 344455555555
Q ss_pred HhcCChHHHHHHHHHHHh
Q 006640 188 GIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~ 205 (637)
...|++++|...|+++.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHTCHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHHHHh
Confidence 555555555555555544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-19 Score=176.19 Aligned_cols=344 Identities=14% Similarity=0.128 Sum_probs=207.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
++..+..+...+...|++++|+..|++++... +.++.++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46678888888999999999999999988753 3467888888889999999999999999988875 557788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
.+...|++++|...|+++.+..+. .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 999999999999999998876431 13334443321110 1112333444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
+++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555442 2344555555555555566666666555555442 23445555566666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
..+.. +.+...+..+.. +. .......+...+...|++++|...++.+.+... .+.
T Consensus 214 a~~~~-~~~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 268 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVA 268 (359)
T ss_dssp HHHHC-TTCHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSH
T ss_pred HHhhC-ccchHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cch
Confidence 55432 222222211100 00 011122234455566666666666666655421 122
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 389 ----HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 389 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
..+..+...|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|...|+++.+..+. +...+..+
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l 346 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 223445666667777777777777766652 446666777777777777777777777777664321 34445555
Q ss_pred HHHHH
Q 006640 465 MWGYS 469 (637)
Q Consensus 465 ~~~~~ 469 (637)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-17 Score=172.12 Aligned_cols=365 Identities=14% Similarity=0.038 Sum_probs=295.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006640 91 AQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE----SGNMEEAM 162 (637)
Q Consensus 91 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 162 (637)
++..+....+ ..++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455555554 3477777788888877 788999999999988764 67788888888888 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWN 234 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 234 (637)
..|++..+.| +...+..|...|.. .+++++|+..|++..+.+ +...+..|...|.. .++.++|+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999988865 67778888888887 788999999999988764 67788888888887 788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHH
Q 006640 235 VMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFA 306 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 306 (637)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999988865 67788888888888 889999999999888764 56677788888886 78899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHH
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVE----IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA-----GFMDKCKEIFD 377 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~ 377 (637)
++..+.+ +...+..+...|.. .++.++|...++...+.+ +...+..+...|... +++++|+..|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9988754 45666777777777 788899999998887754 556777788888877 89999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 006640 378 DMGKAGIKPDAHAYSILAKGYVREQ---EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMC 450 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 450 (637)
+..+.+ +...+..|...|...| ++++|.++|++..+. .+...+..+...|.. .+++++|+..|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 988864 5677788888888766 788899999998876 367888888888888 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 006640 451 EHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 489 (637)
+.+ +...+..|...|.. .++.++|...|++..+.+.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 865 56778888888887 7899999999998877553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-17 Score=170.25 Aligned_cols=364 Identities=15% Similarity=0.089 Sum_probs=313.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 006640 126 IHSIMSQVEENGMDPDSIFFNAVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESV 197 (637)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 197 (637)
+...+.+..+ ..+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455555555 3477888888888888 899999999999999874 67889999999998 89999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006640 198 KLLDLMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEE 269 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 269 (637)
+.|++..+.+ +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+
T Consensus 100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998864 77888889999998 899999999999999876 67788889888987 789999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHH
Q 006640 270 VIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE----IMDRDGVDEVL 341 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 341 (637)
+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...+
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67888899999988 899999999999998864 56778888888886 78999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 006640 342 ALMKEFRVNPDVITYSTIMNAWST----AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE-----QEPEKAEELLM 412 (637)
Q Consensus 342 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 412 (637)
+...+.+ +...+..+...|.. .++.++|+..|+...+.+ +...+..|...|... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9988764 56677778888888 899999999999998764 667888899999888 99999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 006640 413 TMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMK 485 (637)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 485 (637)
+..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+...|.. .++.++|...|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999864 6678888888888867 8899999999999864 67888899999988 899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcc
Q 006640 486 AFGVHPQKSTFLLLAEARRA----TGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 486 ~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~ 523 (637)
+.| +...+..+..+|.. .+++++|..++++.....
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 755 56788889999988 899999999999987765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-17 Score=171.35 Aligned_cols=422 Identities=8% Similarity=0.001 Sum_probs=276.4
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.++..|..++. +.+.|++++|+.+|+++++. .+.+...|...+..+.+.|+++.|..+|+++++. .|+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 446667777776 36677777777777777764 2345666777777777777777777777777664 2466666666
Q ss_pred HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCC
Q 006640 149 INAF-SESGNMEEAMD----TFWKMKE-SGLTP-TTSTYNTLIKGYGI---------AGKPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 149 i~~~-~~~g~~~~A~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~ 212 (637)
+... ...|+.+.|.+ +|++... .|..| +...|...+..... .|+++.|..+|++.... |.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 5432 23455555443 5555443 23322 34566666665544 56666677777666652 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHCC---CCC
Q 006640 213 --LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM------EHNG---VQP 281 (637)
Q Consensus 213 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~~ 281 (637)
...|..........+. .+...++. ...+++..|..++.++ .+.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 1222222211111110 00011110 1234566666666552 2211 233
Q ss_pred C--------hhhHHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHh---
Q 006640 282 N--------GRTCGIIISGYCKE----GKI----KEALRFARTMKEYGVHPNLVIFNLLIKGFVE-------IMDRD--- 335 (637)
Q Consensus 282 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~--- 335 (637)
+ ...|...+...... ++. +++..+|++++... +.+...|...+..+.+ .|+.+
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444333222 222 47778898887753 5678888888888775 68876
Q ss_pred ----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHH
Q 006640 336 ----GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-A-HAYSILAKGYVREQEPEKAEE 409 (637)
Q Consensus 336 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~ 409 (637)
+|..+++...+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . .+|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999886323456888999999999999999999999999986 343 3 589999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006640 410 LLMTMIESGFHPNVVIFTTIISG-WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
+|++..+.. +.+...|...+.. +...|+.++|..+|++..+... -+...|..++..+...|+.++|..+|++....+
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999863 3333444333322 4468999999999999987532 267889999999999999999999999998753
Q ss_pred -CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 489 -VHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 489 -~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
..|+ ...|...+......|+.+.+..+..++....|
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2332 44788888888899999999999999877655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-18 Score=170.51 Aligned_cols=283 Identities=12% Similarity=-0.039 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..+..+...+...|++++|..+|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...|..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHH
Confidence 33444444444455555555555555443322 33334444444445555555555555554432 2334444444444
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 006640 223 WCNEK-NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE 301 (637)
Q Consensus 223 ~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 301 (637)
+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+... .+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHH
Confidence 55554 4555555555444432 11233444444444444444444444444443321 122333334444444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 302 ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
|...++++.+.. +. +...+..+...+...|++++|...++++.+
T Consensus 178 A~~~~~~al~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 178 AERFFSQALSIA-PE-----------------------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHTTC-TT-----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CC-----------------------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444444332 22 334444444444455555555555544443
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 382 AG--------IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 382 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
.. .+....++..+...|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|...|+++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 11 12234556666666666666666666666665543 4455566666666666666666666666665533
Q ss_pred CCCCHHHHHHHHHHH
Q 006640 454 VSPNLKTFETLMWGY 468 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~ 468 (637)
. .+...+..+..++
T Consensus 301 p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 R-DDTFSVTMLGHCI 314 (330)
T ss_dssp S-CCHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHH
Confidence 1 1444555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-18 Score=169.66 Aligned_cols=291 Identities=9% Similarity=-0.020 Sum_probs=207.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS 291 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 291 (637)
+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 34445555555555566666666666555442 22334444455555666666666666666655432 34555666666
Q ss_pred HHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 006640 292 GYCKEG-KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMD 370 (637)
Q Consensus 292 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 370 (637)
.+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++.+.+... .+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666543 33455666677777777777777777777666542 24556677888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG--------FHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
+|...++++.+.. +.+..++..+...|...|++++|...++++.+.. .+.+..+|..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998864 4578899999999999999999999999988641 134567999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HHcCCHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEAR-RATGLTK 510 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~-~~~g~~~ 510 (637)
+..|+++.+... .+...+..+..++...|++++|...|+++.+ +.|+ ...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 999999998643 3677899999999999999999999999876 5564 55777777777 4556544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-18 Score=177.90 Aligned_cols=288 Identities=15% Similarity=0.016 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChH
Q 006640 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKG---FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST----AGFMD 370 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 370 (637)
++++|+..|++..+.. +.++..+..+..+ +...++.++|++.+++..+..+ .+..++..+...+.. .++++
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 3455555555554432 2233333333222 2223444445555555444331 233333333333322 23445
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------
Q 006640 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS--------------- 435 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--------------- 435 (637)
+|.+.+++..... +.+..++..+...|...|++++|...++++.+.. |.+..++..+..+|..
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555554432 2344555555555555555555555555555442 3344444444443322
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCC
Q 006640 436 ----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS--TFLLLAE-ARRATGL 508 (637)
Q Consensus 436 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~ 508 (637)
.+..++|...|++..+... .+..++..+...+...|++++|+..|++..+....|... .+..+.. .+...|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 2335678888888776532 244567788888889999999999998887743332221 2233333 2346788
Q ss_pred HHHHHHHHHHHhhccccc-cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCccc
Q 006640 509 TKEAKRILSKIKNKERTN-EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSL 587 (637)
Q Consensus 509 ~~eA~~~~~~~~~~~~~~-~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~ 587 (637)
.++|+..+++.....+.. ...+..+.+...+++.++.+|+++. ++..||.+|...|++++|....++..+.+..-+.
T Consensus 388 ~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~--~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 388 EDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE--ALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT--HHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 899999998887765543 1223334455667777788888866 5788999999999999999999998888877777
Q ss_pred chhhh
Q 006640 588 ECSWF 592 (637)
Q Consensus 588 g~swi 592 (637)
..||+
T Consensus 466 a~~~~ 470 (472)
T 4g1t_A 466 ASSWN 470 (472)
T ss_dssp -----
T ss_pred HhhcC
Confidence 78886
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-16 Score=168.42 Aligned_cols=390 Identities=10% Similarity=0.043 Sum_probs=263.2
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHc-CCC-C
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL-TIQKRFNSIHS----IMSQVEEN-GMD-P 140 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~ 140 (637)
.+.+...|..++..+.+.|++++|..+|++++.. .|++..|...+... ...|+.+.|.+ +|++.+.. |.. +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 4567888999999999999999999999999975 46888888877543 45677777665 77776653 443 3
Q ss_pred CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 006640 141 DSIFFNAVINAFSE---------SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 141 ~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
+...|...+....+ .|+++.|..+|++..+....+....|..........|. ..+..++.
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------- 188 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------- 188 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH----------
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH----------
Confidence 56788888887665 68899999999999883111112334333322111111 01111110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKM------AASG---MKPD--------VVTYNTIATAYAQN----GEA----DQ 266 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~ 266 (637)
...+++..|..++..+ .+.. ++|+ ...|...+...... ++. +.
T Consensus 189 ------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 189 ------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred ------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 0123344555444442 1111 2332 23444444332221 122 36
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCK-------EGKIK-------EALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 332 (637)
+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 667777776653 2456777777777765 68876 88888888876322456778888888888889
Q ss_pred CHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHH
Q 006640 333 DRDGVDEVLALMKEFRVNPD-VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG-YVREQEPEKAEEL 410 (637)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 410 (637)
++++|..+|+.+.+..+ .+ ...|...+..+.+.|+++.|+.+|++..+.. +.+...+...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999999988887542 23 3578888888888889999999999988753 2233444333332 3368999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN--LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|++..+.. +.+...|..++..+.+.|+.++|..+|+++...+. .|+ ...|...+......|+.+.+..+++++.+
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888763 55788999999999999999999999999988642 232 44777778888888999999998888865
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=174.64 Aligned_cols=309 Identities=10% Similarity=0.025 Sum_probs=196.0
Q ss_pred HHHhcCChHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006640 186 GYGIAGKPEESVK-LLDLMSREGNVKP--NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 186 ~~~~~g~~~~A~~-~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
.+...|++++|+. .|++........| +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4445566666666 5554443221111 23445566666666666666666666666553 334556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
++++|...|+++.+... .+..++..+...|...|++++|+..++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 66666666666655432 345556666666666666666666666665543 1111111110000 0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
. ...+ ...+..+...+ ..|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.
T Consensus 177 ---~-~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 177 ---G-GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ---h-hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01111233333 8899999999999988764221 57889999999999999999999999988864 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C-------
Q 006640 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH---P------- 491 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p------- 491 (637)
+..+|..++..+...|++++|+..|+++.+... .+...+..+..+|...|++++|...|+++.+.... |
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 788999999999999999999999999987642 36778999999999999999999999988652111 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 492 QKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
....|..++.++...|+.++|..+.++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1578999999999999999999987644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-18 Score=169.62 Aligned_cols=304 Identities=11% Similarity=-0.013 Sum_probs=179.0
Q ss_pred hcCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 154 ESGNMEEAMD-TFWKMKESGLT---PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 154 ~~g~~~~A~~-~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
..|++++|.. .|++..+.... .+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3466677776 66655443211 124456677777777788888888887777754 45677777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
++|+..|+++.+.. +.+..++..+..++...|++++|...++++...... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 88888887777654 336677777778888888888888888877765432 22222111000 00 0
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
. .+. ..+..+...+ ..|++++|...++.+.+..+.. +..++..+...|...|++++|+..++++.+.. +.+.
T Consensus 179 ~----~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----GLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----ccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 000 0111111112 4455555555555555433211 45566666666666667777776666666542 3346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP----------NL 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~ 458 (637)
.++..++..|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 667777777777777777777777776653 4556677777777777777777777777776532110 14
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 459 KTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+|..+..+|...|+.++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6777777777777777777776653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=167.55 Aligned_cols=276 Identities=8% Similarity=-0.010 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006640 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISG 292 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 292 (637)
...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+... .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3446666677777777777777777766553 33566666666667777777777777766665432 345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 006640 293 YCKEGKIKEALRFARTMKEYGVHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 371 (637)
|...|++++|+..|+++.+.. |+.. .+..+ ......+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHH
Confidence 666666666666666665431 1110 00000 0122345556778888999999
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 372 CKEIFDDMGKAGIK-PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 372 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
|+..++++.+.... .+..++..+...|.+.|++++|...|+++.+.. +.+..+|..++.+|...|++++|+..|+++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998886422 168899999999999999999999999998874 6678999999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 451 EHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH---P--------QKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p--------~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+... .+..++..+..+|...|++++|...|+++.+.... | +...|..+..++...|+.+.|....++-
T Consensus 275 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 275 EIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8642 25778999999999999999999999998642111 1 2467889999999999999998877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=171.31 Aligned_cols=277 Identities=10% Similarity=-0.006 Sum_probs=195.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 255 (637)
+...+..+...+.+.|++++|+..|+++.+.. |.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45568899999999999999999999999875 6689999999999999999999999999998864 44688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 006640 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
.+|...|++++|...|+++.+... .+...+..+. .....+..+...+...|+++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC--------------------------------------------CCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 999999999999999999987532 1222222220 01122333334444455555
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 336 GVDEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTM 414 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (637)
+|...++.+.+..+. .+..++..+...|...|++++|+..++++.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443321 145666666777777777777777777766653 345677777888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 415 IESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-----------PNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 415 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+.. +.+..+|..+..+|...|++++|+..|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7763 555777888888888888888888888887753211 1256788888889999998888776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-15 Score=161.66 Aligned_cols=383 Identities=12% Similarity=0.109 Sum_probs=290.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGH--KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
.-....++.|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..+...+... .....+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 3345567888899999999999999884311 12345556666666665 55666655554432 22444778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHH
Confidence 88899999999999999631 2333344433 778899999998865 35788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+|+..|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+ +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----I 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----H
Confidence 999999664 377888899999999999999999998877754 3444455699999999998864433 2
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 006640 311 EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+ .++...|..+...|...|++++|...|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 2 456777888999999999999999999885 37899999999999999999999876 36789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|.-+..++++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999998877654 3467777899999999999999999998887643 2233366666666655
Q ss_pred --cCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 471 --ARQPWRAEEILQIMKAFGVHP------QKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 471 --~g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
-++..++.++|..-. ++.| +...|..++-+|.+.|+++.|...+
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 456666777766432 2333 3557999999999999999998544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-16 Score=162.16 Aligned_cols=384 Identities=12% Similarity=-0.031 Sum_probs=235.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEG--------GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-----G 137 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 137 (637)
.+..||.|...+...|++++|++.|++.++. ..+....+|+.+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888889999998888876541 12234667888888888888888888888877653 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhcCCCC
Q 006640 138 --MDPDSIFFNAVINAFSES--GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY---GIAGKPEESVKLLDLMSREGNVK 210 (637)
Q Consensus 138 --~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~ 210 (637)
......++..+..++... +++++|+..|++..+..+. ++..+..+..++ ...++.++|++.+++..+.. |
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--C
Confidence 112345666666555554 4688888888888876543 555555555443 34567778888888877764 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006640 211 PNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC 286 (637)
Q Consensus 211 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 286 (637)
.+..++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+++..+..+ .+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 566666666655544 456778888888877654 34567777888888888888888888888876532 345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006640 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 366 (637)
..+..+|...+....+... .. ........+..+.|...++...+..+ .+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------~~------~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------NG------MYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------HH------HHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 6666555432111110000 00 00001111234667777777766542 3455677788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 367 GFMDKCKEIFDDMGKAGIKPDA--HAYSILAKG-YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
|++++|+..|++.++....+.. ..+..+... +...|+.++|+..|.+..+. .|+...+... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 9999999988888876433221 122333322 34678888999998888875 4443332222 23445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006640 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.++++..+..+ .+..+|..+..+|...|+.++|++.|++..+.+
T Consensus 417 ~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56666665442 366788888888888999999999998887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=157.38 Aligned_cols=266 Identities=10% Similarity=-0.003 Sum_probs=187.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
.+...+..+...+...|++++|+.+|+++.... +.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355667778899999999999999999998753 4478889999999999999999999999999875 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCCHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL--------------IK-GYGIAGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
..|...|++++|...++++.+..+. +...+..+ .. .+...|++++|.+.++++.+.. +.+..
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 173 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQ 173 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHH
Confidence 9999999999999999999887533 23333333 22 2556677777777777776653 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006640 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC 294 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 294 (637)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+...|.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 77777777777777777777777776553 33456666677777777777777777776665432 34556666666777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 295 KEGKIKEALRFARTMKEYGVHP-----------NLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
+.|++++|...++++.+..... +...|..+..++...|+.++|..+++
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777777777776665442111 34455555555666666665555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-16 Score=151.94 Aligned_cols=270 Identities=11% Similarity=0.064 Sum_probs=169.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDV--VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 300 (637)
....|++..|+..+++.... .|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 44556666666666554332 2222 2334456666677777666655433 1 2345556666666666677777
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006640 301 EALRFARTMKEYGV-HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 301 ~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 379 (637)
+|++.++++...+. +.+...+..+...+...|++++|.+.++. +.+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777666543 33455566666667777777777776665 346667777777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 380 GKAGIKPDAHAY---SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 380 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++...|++++|+..|+++.+..+ -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 7653 332211 122333444577888888888887763 66777888888888888888888888888777543 2
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 457 NLKTFETLMWGYSEARQPWR-AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
+..++..++..+...|+.++ +.++++++.+ +.|+..... +...+.+.++++.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~---d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK---EYRAKENDFDRLV 285 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH---HHHHHHHHHHHHH
Confidence 66677778878888888765 4577777766 556654332 3334444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-14 Score=158.75 Aligned_cols=317 Identities=11% Similarity=0.121 Sum_probs=151.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
...+++|+..|.+.+|++++++..-.+ +..+....+.|+....+. +..+...+..+.... + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 444555555555555555555555221 012233444444444444 333333333333211 1 222444555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555321 1112222221 4455555555555431 3455555555555555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..|.+. .|...|..++.+|.+.|++++|++++...++.. ++....+.++.+|++.+++++..... .
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 555332 244455555555555555555555555554432 22222223555555555544322221 1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
.++...+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 123344444555555555555555555553 24555555555555555555555554 24455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++...
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555544321 1244444455555555555555555554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-16 Score=154.96 Aligned_cols=275 Identities=9% Similarity=0.013 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4445555555566666666665555543 3445555555556666666666666666555542 224555555666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCCHhHH
Q 006640 260 QNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK--GFVEIMDRDGV 337 (637)
Q Consensus 260 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a 337 (637)
..|++++|...++++.+... .+...+..+.... ++......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 66666666666666555422 1222222220000 00000001101 12333444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 338 DEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
...++.+.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44444443332 1234445555555555555555555555554432 234455555556666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP-----------NLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
. +.+..+|..+...|...|++++|...|+++.+..... +..++..+..++...|+.++|..++++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 3445556666666666666666666666655432111 244555666666666666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=164.97 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=62.7
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 84 ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 163 (637)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|.+.|.+ .+|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445566666666655 2223566666666666666666666643 2344455666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG 243 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 243 (637)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 55544442 2334555556666666666665555542 144445555555555555555555555544
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL 323 (637)
Q Consensus 244 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 323 (637)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 23455555555555555555555554 14455555555555555555553333221 122222333
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 324 LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
++..|.+.|.++++..+++...... +.....|+-+..+|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 4455555555555555555544433 2334444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-17 Score=159.21 Aligned_cols=237 Identities=12% Similarity=0.138 Sum_probs=102.4
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 44568888888888888888888888653 46678888888888888888888877766653 45577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccH
Confidence 88888888888887774 256678888888888888888888888866 2588888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887 277888888888888888888865554322 23333456788888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006640 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM 344 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (637)
.... +.....|+-+...|++- +++...+.++..
T Consensus 234 L~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~ 266 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELF 266 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 7654 55666777776666653 444444444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=147.27 Aligned_cols=253 Identities=11% Similarity=0.066 Sum_probs=183.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPS--LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 156 (637)
++.....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45566788999998888776542 233 23556667888888888888876644 2 2566777888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 157 NMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888765434 456667777888888888888888876 35778888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 236 MHKMAASGMKPDVVTY---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88887763 443211 123333444578888888888887763 356777888888888888888888888887766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHhCC
Q 006640 313 GVHPNLVIFNLLIKGFVEIMDRDG-VDEVLALMKEFR 348 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 348 (637)
. +.+..++..++..+...|+.++ +.++++++.+..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4 4567777777777777777765 456777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=174.67 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIE---SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
..+|++||++|++.|++++|.++|.+|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006640 465 MWGYSEARQP-WRAEEILQIMKAFGVHPQKSTFLLLAEARRA 505 (637)
Q Consensus 465 ~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 505 (637)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 5555555543 4455555555555555555555555544443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=169.79 Aligned_cols=117 Identities=8% Similarity=0.118 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGK---AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.||+++|++|++.|++++|..+|..|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||.+|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4555555555555555555555555432 2455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 431 SGWCSDGS-MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 431 ~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 55555554 24555555555555555555555555544433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-14 Score=134.38 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=114.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 006640 251 YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV--HPN----LVIFNLL 324 (637)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 324 (637)
+..+...+...|++++|...|+++.+.. .+..++..+..+|...|++++|+..++++.+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444433 3344444444444444444444444444433210 001 2344444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
...+...|++++|...++...+.. |+. ..+...|++++|...++.+.... +.+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 444445555555555554444432 221 22344455566666666655542 22345555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 405 EKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++.+... .+...+..+..++...|++++|...|++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666543 44556666666666666666666666666665432 23555666666666666666666666665
Q ss_pred HH
Q 006640 485 KA 486 (637)
Q Consensus 485 ~~ 486 (637)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-14 Score=133.43 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----hhhHH
Q 006640 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PN----GRTCG 287 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 287 (637)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555566666666666666655544 45555555666666666666666666555442111 11 35566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 367 (637)
.+...|.+.|++++|+..|+++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 332 23444566677777777766643 224566777777788888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.. +.+..+|..+..++...|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877654 3467788888888888888888888888887764 5567888888888888888888888888
Q ss_pred HHHHC
Q 006640 448 KMCEH 452 (637)
Q Consensus 448 ~m~~~ 452 (637)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-14 Score=132.00 Aligned_cols=196 Identities=14% Similarity=0.028 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+..+...+...|++++|...|+++++.. |.+...+..+...+.+.|++++|+..|++..+..+. +...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3344444444444444444444444444433 333444444444444444444444444444443322 33444444444
Q ss_pred HHhc-----------CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 187 YGIA-----------GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255 (637)
Q Consensus 187 ~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 255 (637)
+... |++++|+..|++..+.. |.+...|..+...+...|++++|+..|++.++.. .+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 4444 55555665555555543 3345555555555556666666666665555544 3555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
.++...|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555566666666666655554422 23445555555555556666655555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=149.36 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG---KIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
..+..|...|...+.++++......+.+.-...+...+..|..+|.+.| +.++|+..|++..+.| +++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3444455555555543333333222211111123336666666666666 6667777777776665 44555445555
Q ss_pred HHHHHc----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 326 KGFVEI----MDRDGVDEVLALMKEFRVNPDVITYSTIMNA-W--STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 326 ~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
..|... ++.++|...|+... . -+...+..+... + ...+++++|+..|++..+.| +...+..|..+|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 555443 56677777777765 2 244455555555 3 45778888888888887765 667777777777
Q ss_pred HHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 399 VREQ-----EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 399 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
. .| ++++|...|++.. +.++..+..|...|.. ..+.++|...|++..+.|. ......|...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHH
Confidence 6 44 8888888888876 3466777777777765 3488888888888887653 334445555555
Q ss_pred h----cCChhHHHHHHHHHHHCC
Q 006640 470 E----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 470 ~----~g~~~~A~~~~~~m~~~g 488 (637)
. ..+.++|...|+...+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 346777888887776655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=129.92 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|++...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. |.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 345555666666666666666666666666655433 55566666666666666666666666666553 344556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 006640 219 LVRAWCNE-----------KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCG 287 (637)
Q Consensus 219 li~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 287 (637)
+...+... |++++|+..|++.++.. +.+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 66666655 55555555555554432 1234444445555555555555555555554443 3444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
.+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555554432 23344444444444444444444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=148.00 Aligned_cols=343 Identities=13% Similarity=0.049 Sum_probs=240.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRF---NSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
+...+.+.|++++|.+.|++..+.| ++.++..+...+...|+. ++|...|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 6778889999999999999998765 344555666667777877 8999999998853 55666777775555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 155 SG-----NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 155 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.+ ++++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......+ +...+..|...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC
Confidence 55 788999999999997643 36777888887766543 4555555555544 456777888888888
Q ss_pred CCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc---
Q 006640 227 KNIT----EAWNVMHKMAASGMKPDVVTYNTIATAYAQNG---EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE--- 296 (637)
Q Consensus 227 g~~~----~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 296 (637)
+.++ ++..+++.... .++..+..|...|...| +.++|++.|++..+.|. ++...+..+..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 8554 44444444433 23448888999999999 99999999999998875 4555557788888665
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 006640 297 -GKIKEALRFARTMKEYGVHPNLVIFNLLIKG-F--VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG----- 367 (637)
Q Consensus 297 -g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 367 (637)
+++++|+..|++.. . -+...+..+... + ...++.++|...|+...+.+ +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999987 3 355666666666 3 46899999999999998876 6777888888887 55
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSM 439 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 439 (637)
++++|+..|++.. . -+...+..|..+|.. ..++++|..+|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999887 3 477888888888876 349999999999999876 34455667766664 4588
Q ss_pred HHHHHHHHHHHHCCC
Q 006640 440 DRAIEVFDKMCEHGV 454 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~ 454 (637)
++|...|+...+.|.
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999888763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=136.93 Aligned_cols=251 Identities=8% Similarity=0.036 Sum_probs=208.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-FNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.+...|+.+...+.+.|++++|+..|++++... +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 457778889999999999999999999999853 3478899999999999996 999999999999986 6788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN-EK 227 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g 227 (637)
..++...|++++|+..|+++.+..+. +..+|..+..++...|++++|+..|+++.+.. +.+...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998765 78899999999999999999999999999875 5678999999999999 66
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---
Q 006640 228 NITEA-----WNVMHKMAASGMKPDVVTYNTIATAYAQNG--EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG--- 297 (637)
Q Consensus 228 ~~~~A-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 297 (637)
..++| +..|++.+... +-+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 58888888764 336778888888888888 688999999887 33 2345678888889998874
Q ss_pred ------CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 006640 298 ------KIKEALRFARTM-KEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 298 ------~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+++|+++|+++ .+.. +.....|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 358999999998 6543 344556666665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-13 Score=130.19 Aligned_cols=235 Identities=9% Similarity=-0.037 Sum_probs=144.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN--PDVITYSTIMNAW 363 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~ 363 (637)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++...+.... .....+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344445555555555555555555442 223334555555555555555555555555442211 1233466666677
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
...|++++|+..|+...+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766643 3355677777777777777777777777777653 556666766663344445788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 006640 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFG-VHPQ------KSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~eA~ 513 (637)
..|+++.+... .+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..+...+...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88887776532 235666677777777777 777777777765321 1122 246667777888888888888
Q ss_pred HHHHHHhhccc
Q 006640 514 RILSKIKNKER 524 (637)
Q Consensus 514 ~~~~~~~~~~~ 524 (637)
..++++....|
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 88877766655
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-12 Score=123.33 Aligned_cols=225 Identities=12% Similarity=0.040 Sum_probs=161.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
.++..+..+...+...|++++|+..|++..+ +.+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3455667777777788888888888888776 3355677777777777 778888888888777754 66777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006640 146 NAVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 146 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHH
Confidence 777777777 777888888887777764 66677777777777 777777777777777653 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006640 218 VLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGII 289 (637)
Q Consensus 218 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 289 (637)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777776 777777777777777653 45666667777777 777777777777776653 24556666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcC
Q 006640 290 ISGYCK----EGKIKEALRFARTMKEYG 313 (637)
Q Consensus 290 i~~~~~----~g~~~~A~~~~~~~~~~~ 313 (637)
..+|.+ .+++++|...|++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677776 677777777777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-13 Score=126.05 Aligned_cols=201 Identities=12% Similarity=0.080 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
+..|..+...+...|++++|+..|+++.... +.+..++..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777777888888888888888777642 3356677777777777777777777777777654 4466667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
|...|++++|...|+++.+.+..| +...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777766522222 34556666666677777777777777666653 345666666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
+|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666665543 234555556666666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-10 Score=124.24 Aligned_cols=432 Identities=8% Similarity=-0.015 Sum_probs=278.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 006640 88 PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN---MEEAMDT 164 (637)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 164 (637)
..+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++.. +|.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455555555443 347777777777777777777777777777765 36667777777777777777 7777777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHH---------
Q 006640 165 FWKMKESGL-TPTTSTYNTLIKGYGIAGKP--------EESVKLLDLMSREGNV--KPNLRTYNVLVRAWC--------- 224 (637)
Q Consensus 165 ~~~m~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~--~~~~~~~~~li~~~~--------- 224 (637)
|++.....+ +|++..|...+....+.++. +...++|+.....-+. +.+...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 777776531 35677777766655554443 2334666665543222 234566766665543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHH--CCC----C-----
Q 006640 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA-------------QNGEADQAEEVIVEMEH--NGV----Q----- 280 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~~~--~~~----~----- 280 (637)
..++++.+..+|++++......-..+|......-. ...+++.|...+.++.. .++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23346667777777764311111223321111100 11233445555554322 111 1
Q ss_pred ------C--C------hhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH-
Q 006640 281 ------P--N------GRTCGIIISGYCKEG-------KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVD- 338 (637)
Q Consensus 281 ------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 338 (637)
| + ...|...+..--..+ ..+.+..+|++.+..- +-....|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 123444444332222 1334567788887653 557888888888888889988996
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 006640 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---------KP------------DAHAYSILAKG 397 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~ 397 (637)
.+++...... +.+...|...+......|+++.|.++|+.++.... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988753 45677788888888899999999999999876310 13 23468888888
Q ss_pred HHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006640 398 YVREQEPEKAEELLMTMIES-GFHPNVVIFTTIISGWCSD-GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+.|..+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999876 2 22334444333333344 4589999999999876 3335666778888888899999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 476 RAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|..+|++.......+. ...|...++.-...|..+.+..+.+++....|.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999876433222 347888888889999999999999999888775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-13 Score=128.09 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD--SIFFNAVINA 151 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~ 151 (637)
.+......+...|++++|+..|+++++.. +.+..++..+..++...|++++|...++++.+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556778889999999999999998853 33566788888899999999999999999887431222 3458888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
|...|++++|...|++..+..+. +..+|..+...|...|++++|+..|++..+.. +.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887544 67788999999999999999999999888763 5567788888734444559999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHHcCCHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGE---ADQAEEVIVEMEHNG-VQPN------GRTCGIIISGYCKEGKIKE 301 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~ 301 (637)
|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..++..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988763 3346777778888888888 777888888776531 1122 2467778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 006640 302 ALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
|...|+++.+.. +.+...+..+
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhcC-ccHHHHHHHh
Confidence 888888887764 3444444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-12 Score=120.24 Aligned_cols=144 Identities=13% Similarity=0.035 Sum_probs=70.8
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 006640 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST----AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQ 402 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 402 (637)
.+++++|...++...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCC
Confidence 444444444444443332 33444444444444 455555555555554432 34444445555554 55
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 006640 403 EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQP 474 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~ 474 (637)
++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.
T Consensus 165 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 165 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 5555555555555432 34445555555555 555555555555555542 23444455555555 5555
Q ss_pred hHHHHHHHHHHH
Q 006640 475 WRAEEILQIMKA 486 (637)
Q Consensus 475 ~~A~~~~~~m~~ 486 (637)
++|...|++..+
T Consensus 239 ~~A~~~~~~a~~ 250 (273)
T 1ouv_A 239 KQAIENFKKGCK 250 (273)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=123.22 Aligned_cols=203 Identities=13% Similarity=-0.021 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567777888888999999999999988875 567888888888999999999999999988876543 67788888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
|...|++++|++.|+++...+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 889999999999998887722123456778888888888899999999888887764 3357778888888888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
|...++++.+... .+...+..+...+.+.|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888876543 456677778888888888888888888887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-12 Score=120.60 Aligned_cols=201 Identities=11% Similarity=-0.046 Sum_probs=90.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
.++..|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 344445555555555555555555555554432 2234445555555555555555555555554443 33444444444
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 150 NAFSES-GNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 150 ~~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
..+... |++++|...|+++.+.+..| +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcC
Confidence 555555 55555555555444411111 13344444444444444444444444444432 223444444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 228 NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44444444444443321023333333334444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=119.54 Aligned_cols=205 Identities=8% Similarity=-0.018 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
.++.++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+..+. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 356788889999999999999999999999875 667889999999999999999999999999887543 788899999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 185 KGYGIA-GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 185 ~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
..|... |++++|...++++.+.+..+.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 99999999999998832234447889999999999999999999999998764 3468889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 264 ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999887643246677888888899999999999999998765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.1e-14 Score=133.44 Aligned_cols=222 Identities=12% Similarity=-0.012 Sum_probs=152.2
Q ss_pred HcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 84 ERGKPQEAQAIFNNLIEGGHK---PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (637)
..|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 347888899999988875321 245677778888888888888888888888775 5577888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|...|+++.+..+. +..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888876433 56778888888888888888888888887753 343334444445566677777777776666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP---NGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
... +++...+. ++..+...++.++|...+.+........ +..++..+...|.+.|++++|...|+++.+.
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 542 23333333 5556666667777777776665432110 1355566666666666666666666666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=131.70 Aligned_cols=245 Identities=12% Similarity=-0.047 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006640 262 GEADQAEEVIVEMEHNGV---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVD 338 (637)
Q Consensus 262 g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 338 (637)
|++++|+..|+++.+... +.+..++..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444443311 0123344444445555555555555555544432 234445555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..++.+.+..+ .+..++..+...|...|++++|...++.+.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 55555544331 234555555566666666666666666665532 332233333334455566666666666655542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006640 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--P-NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495 (637)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 495 (637)
+++...+. ++..+...++.++|+..++++.+.... | +..++..+...|...|++++|...|+++.+ ..|+.
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN-- 248 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--
Confidence 33333333 455555666666666666666543211 0 135566667777777777777777777665 33432
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 006640 496 FLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.....++...|++++|...+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 122234455566666665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=130.87 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN-ITEAWNVMHKMAASGMKPDVVTYNTIATAY 258 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 258 (637)
|..+...+...|++++|++.|+++.... |.+...|+.+..++...|+ +++|+..|+++++.. +-+...|+.+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444444444444444444444444432 2334444444444444443 445554444444432 12344444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHH
Q 006640 259 AQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE-IMDRDGV 337 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 337 (637)
...|++++|+..|+++++... .+...|..+..++.+.|++++|+..|+++++.. +.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 444555555555544444322 234444445555555555555555555554443 2344444444444444 2332333
Q ss_pred -----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------
Q 006640 338 -----DEVLALMKEFRVNPDVITYSTIMNAWSTAG--FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-------- 402 (637)
Q Consensus 338 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 402 (637)
+..++..++.. +.+...|..+...+...| ++++|++.+..+ +. .+.+...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 23344444332 123444444444444444 345555555544 22 1234445555555555442
Q ss_pred -CHHHHHHHHHHH
Q 006640 403 -EPEKAEELLMTM 414 (637)
Q Consensus 403 -~~~~A~~~~~~~ 414 (637)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135555555555
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-13 Score=127.42 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=136.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
.....|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667777888888899999999998888743 3467788888888888888888888888887765 55677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
..|...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888887776533 66777777788888888888888888877653 45677777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
++|+..++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777776653 334666777777777777777777777777664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=126.86 Aligned_cols=202 Identities=13% Similarity=0.099 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
.+.+|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 44566666777777788888888888777654 556777777777777788888888888777765433 5667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7777777888877777777654 4566777777777777777777777777776653 335666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
+|...++++.+... .+..++..+..+|.+.|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777777665432 345566667777777777777777777776553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-10 Score=123.69 Aligned_cols=425 Identities=9% Similarity=0.048 Sum_probs=300.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCCHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR---FNSIHSIMSQVEENG-MDPDSI 143 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~ 143 (637)
.+.+...|..++..+.+.+.++.++.+|++++.. .+.....|...+..-.+.++ ++.+..+|++.+... .+|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4578999999999999999999999999999985 45678889988888888888 999999999998764 138999
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 006640 144 FFNAVINAFSESGNM--------EEAMDTFWKMKE-SGL-TP-TTSTYNTLIKGYGI---------AGKPEESVKLLDLM 203 (637)
Q Consensus 144 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 203 (637)
.|..-+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 999888776665543 334578887654 455 44 45788888876542 34578899999999
Q ss_pred HhcCCCCCC--HHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHH--CCCC---------------C-----
Q 006640 204 SREGNVKPN--LRTYNVLVRAWCN-------------EKNITEAWNVMHKMAA--SGMK---------------P----- 246 (637)
Q Consensus 204 ~~~~~~~~~--~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~--~g~~---------------~----- 246 (637)
... |.. ..+|......-.. ..+++.|...+.++.. .++. |
T Consensus 221 L~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 221 LCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp TTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 853 322 2344322221111 1233445555554321 1111 1
Q ss_pred C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Q 006640 247 D---VVTYNTIATAYAQNG-------EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL-RFARTMKEYGVH 315 (637)
Q Consensus 247 ~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~ 315 (637)
+ ...|...+..--..+ ..+.+..+|++.+... +.+...|...+..+...|+.++|. .+|++..... +
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-P 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-C
Confidence 0 134544444322222 1234566788877653 347788888889888999999997 9999998753 5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---------CC------------CHHHHHHHHHHHHHcCChHHHHH
Q 006640 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV---------NP------------DVITYSTIMNAWSTAGFMDKCKE 374 (637)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~a~~ 374 (637)
.+...|...+....+.|+.+.|..+|+.+..... .| ...+|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777788888888999999999999998875310 12 13467788888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 375 IFDDMGKAGIKPDAHAYSILAKGYVRE-QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
+|....+.-......+|...+..-.+. ++.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++.....
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998761122344555444444454 4599999999999887 46688888899998889999999999999998864
Q ss_pred CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 454 VSP--NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAE 501 (637)
Q Consensus 454 ~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 501 (637)
..+ ....|...+..-...|..+.+..+.+++.+ ..|+......+++
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTN 582 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence 322 234788888888889999999999999976 3455444433433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-13 Score=135.53 Aligned_cols=156 Identities=15% Similarity=0.050 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----V 423 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 423 (637)
.++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+... .++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3456666667777777777777776554210 011 23666777777777888887777777654210 011 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-H
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-K 493 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~ 493 (637)
.++..+...|...|++++|...|+++.+. +..+. ..++..+...|...|++++|...+++..+ .+..+. .
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 46667777777888888888887777642 11111 34566777777778888888887777642 221221 2
Q ss_pred HHHHHHHHHHHHcCCH
Q 006640 494 STFLLLAEARRATGLT 509 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~ 509 (637)
.++..+..++...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 2455556666665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=133.57 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVV 424 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 424 (637)
++..+...|...|++++|...++...+... ..+ ..++..+...|.+.|++++|...+++..+. +. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 344455555555555555555555433100 001 345555666666666666666666655432 11 11234
Q ss_pred HHHHHHHHHHhcCCH
Q 006640 425 IFTTIISGWCSDGSM 439 (637)
Q Consensus 425 ~~~~li~~~~~~g~~ 439 (637)
++..+...+...|+.
T Consensus 349 ~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHh
Confidence 555566666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-13 Score=135.70 Aligned_cols=279 Identities=14% Similarity=0.084 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCChh
Q 006640 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----G-VQPNGR 284 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 284 (637)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445556667777777777777777766532 122 35666667777777777777777665432 1 011234
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 364 (637)
++..+...|...|++++|...+++..+.. ...+ .......++..+...|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~---------------~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLG---------------DRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT---------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhh---------------chHHHHHHHHHHHHHHH
Confidence 55556666666666666666666654320 0000 00011234444555555
Q ss_pred HcCC-----------------hHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 006640 365 TAGF-----------------MDKCKEIFDDMGKA----G-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-HP 421 (637)
Q Consensus 365 ~~g~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 421 (637)
..|+ +++|+..+.+..+. + ......++..+...|...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 56666665554331 1 011235677788888899999999998888765310 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C
Q 006640 422 N----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-P----NLKTFETLMWGYSEARQPWRAEEILQIMKAF----G 488 (637)
Q Consensus 422 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g 488 (637)
+ ..++..+...|...|++++|+..|+++.+.... . ...++..+...+...|++++|..++++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 237788888999999999999999988753110 1 1457888899999999999999999987541 1
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 489 VHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 489 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
..+. ...+..+..++...|++++|..+++++....
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 3477788999999999999999999987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-11 Score=116.54 Aligned_cols=221 Identities=9% Similarity=-0.001 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCH-------hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVE-------IMDR-------DGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
++|..+|++++... +.+...|..++..+.. .|+. ++|..+|+...+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 5567777777766653 4775 8888999888873123466788888888899
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKP-DAH-AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC-SDGSMDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 442 (637)
.|++++|..+|+++++. .| +.. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998875 34 343 88889999999999999999999998864 455556654444322 36999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG-VHP--QKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..+|+++.+... -+...|..++..+...|+.++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987532 267788888999999999999999999998752 455 3567888888899999999999999998
Q ss_pred hhcccc
Q 006640 520 KNKERT 525 (637)
Q Consensus 520 ~~~~~~ 525 (637)
....|+
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 877664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=132.96 Aligned_cols=278 Identities=13% Similarity=0.044 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 006640 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRAWCNEKNITEAWNVMHKMAAS----GM-KPD 247 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~ 247 (637)
...+..+...+...|++++|+..|+++.+.. +.+. ..|..+...|...|++++|+..+++..+. +. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667788999999999999999999874 3343 57889999999999999999999988753 11 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHcCC-----------------HHHHHHH
Q 006640 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNG-----VQPNGRTCGIIISGYCKEGK-----------------IKEALRF 305 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 305 (637)
..++..+...|...|++++|...+++..+.. ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999876531 11224466777778888888 6666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006640 306 ARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
+.+..+. ..... .......++..+...|...|++++|+..+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5554321 11110 00012235566666777777777777777766542100
Q ss_pred -CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 006640 386 -PD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-H----PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--- 452 (637)
Q Consensus 386 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 452 (637)
.+ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|...|++..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 23677788888888999999888888765310 0 11467788888899999999999999888753
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 453 -GVSP-NLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 453 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+ ...++..+..+|...|++++|..++++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 134677888899999999999999988865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-11 Score=116.57 Aligned_cols=236 Identities=8% Similarity=0.010 Sum_probs=136.7
Q ss_pred chhHHHHHHHHHHHc----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHH
Q 006640 71 TVRSMTKLMNSLIER----GKP----QEAQAIFNNLIEGGHKPSLVTYTTLLAALTI-------QKRF-------NSIHS 128 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~ 128 (637)
+...|...+..--+. ++. ++|+.+|++++... +.++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345566666554332 122 56777777777632 3466677776666543 3664 66777
Q ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 129 IMSQVEE-NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 129 ~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+|++.++ .. +.+...|..++..+.+.|++++|..+|+++.+..+. +.. +|..++..+.+.|++++|+.+|++..+.
T Consensus 86 ~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777666 22 445556667777777777777777777776664322 232 6666666666667777777777766654
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--C
Q 006640 207 GNVKPNLRTYNVLVRAWC-NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG-VQP--N 282 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~ 282 (637)
. +++...|...+.... ..|+.++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++..... ++| .
T Consensus 164 ~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 3 333444443333222 2466666666666665542 2245556666666666666666666666666542 222 2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 283 GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
...|..++..+.+.|+.++|..+++++.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555666666666666666666666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-11 Score=109.03 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=9.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
|..+...|.+.|++++|+..|++.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~a 31 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKV 31 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-12 Score=124.35 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS----LVTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
.+......+...|++++|+..|+++.+... .+ ...+..+...+...|++++|...++++.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555666666666666666655321 12 2344555555555666666666555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-11 Score=108.08 Aligned_cols=167 Identities=11% Similarity=0.054 Sum_probs=113.0
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
+...|..|...|.+.|++++|+..|++.++.. +-++.++..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34566677777777777777777777776643 2356667777777777777777777777766654 455666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+...++++.|...+.+..+..+. +...+..+...|.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 677777777777777776665433 56666677777777777777777777766653 455666777777777777777
Q ss_pred HHHHHHHHHHHC
Q 006640 231 EAWNVMHKMAAS 242 (637)
Q Consensus 231 ~A~~~~~~~~~~ 242 (637)
+|+..|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-12 Score=125.64 Aligned_cols=273 Identities=10% Similarity=0.020 Sum_probs=210.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD----SIFFNAVINAFSESGNMEEAMDTFWKMKES----GLT-PTTST 179 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~ 179 (637)
.+......+...|++++|...++++.+.. +.+ ...+..+...|...|++++|...+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556678889999999999999999875 444 467888999999999999999999886543 111 13567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 006640 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN----LRTYNVLVRAWCNEKN--------------------ITEAWNV 235 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 235 (637)
+..+...|...|++++|...+++..+.....++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 888999999999999999999987653211122 4478889999999999 9999999
Q ss_pred HHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHHcCCHHHHHHH
Q 006640 236 MHKMAAS----GM-KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-----QPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 236 ~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
+++.... +. .....++..+...+...|++++|...+++..+... .....++..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9887542 11 11245788899999999999999999998764311 01134788899999999999999999
Q ss_pred HHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCChHHHHHH
Q 006640 306 ARTMKEYGV-HPN----LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV-----NPDVITYSTIMNAWSTAGFMDKCKEI 375 (637)
Q Consensus 306 ~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~ 375 (637)
+++..+... ..+ ..++..+...+...|++++|...++...+... .....++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 998864310 111 55788889999999999999999988754311 11144677899999999999999999
Q ss_pred HHHHHHC
Q 006640 376 FDDMGKA 382 (637)
Q Consensus 376 ~~~~~~~ 382 (637)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=128.42 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=157.2
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--
Q 006640 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEG-------GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-- 136 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 136 (637)
...+.+..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|...++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345567888999999999999999999999998862 22335667888889999999999999999988764
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006640 137 ----GM-DPDSIFFNAVINAFSESGNMEEAMDTFWKMKES------GL-TPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 137 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
+- +....++..+...|...|++++|...|+++.+. +. +....++..+...|...|++++|++.|+++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 223567888888889999999999999887764 11 1234567778888888888888888888876
Q ss_pred hc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHHHcCCH
Q 006640 205 RE------GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG-------MKPDV-------VTYNTIATAYAQNGEA 264 (637)
Q Consensus 205 ~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-------~~~~~-------~~~~~li~~~~~~g~~ 264 (637)
.. +..+....++..+...|...|++++|...++++.+.. ..+.. ..+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 64 1112234567778888888888888888888876521 11111 1111222223333444
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.++...+....... +.+..++..+..+|.+.|++++|..+|++..+
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444443321 12344555666666666666666666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-11 Score=123.27 Aligned_cols=231 Identities=11% Similarity=-0.023 Sum_probs=160.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-C-----CHHHHH
Q 006640 289 IISGYCKEGKIKEALRFARTMKEY----GVHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-P-----DVITYS 357 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 357 (637)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+.+..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777766542 1011 2345666666777777777777766665432100 1 134677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006640 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIK-PD----AHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVVIFT 427 (637)
Q Consensus 358 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 427 (637)
.+...|...|++++|...+.+..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888999999999998887653110 11 247888999999999999999999998762 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCEH----GVSPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFGVHPQ-KSTFLLL 499 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 499 (637)
.+...|...|++++|...+++..+. +-+.....+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999988753 111112235667778888888 67777777654 33343 3367789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc
Q 006640 500 AEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 500 ~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.++...|++++|..+++++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-11 Score=122.16 Aligned_cols=233 Identities=8% Similarity=-0.022 Sum_probs=122.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-----ChhhHH
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAAS----GMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ-P-----NGRTCG 287 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 287 (637)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777766542 1011 1345566666666666666666666665432100 0 123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGV-HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 366 (637)
.+...|...|++++|+..|++..+... .++. .....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-------------------------------QLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-------------------------------HHHHHHHHHHHHHHHHC
Confidence 555666666666666666655542100 0000 00112444555555666
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcC
Q 006640 367 GFMDKCKEIFDDMGK-----AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g 437 (637)
|++++|+..+++..+ ...+....++..+...|.+.|++++|...+++..+. +.+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 666666666655544 211223455666666666666666666666665432 11111223455566666666
Q ss_pred C---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 438 S---MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 438 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+ +++|+.++++. +..|+ ...+..+...|...|++++|..+|++..
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 56666666554 22222 2355566667777777777777776664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-12 Score=129.79 Aligned_cols=214 Identities=8% Similarity=-0.056 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006640 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 377 (637)
+++++..++...... +.+...+..+...+...|++ ++|...|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 34566677777777777777 77777777776654 2356777777777778888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006640 378 DMGKAGIKPDAHAYSILAKGYVRE---------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD--------GSMD 440 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 440 (637)
+.++. .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77765 35567777777777777 88888888888887764 56677888888888887 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 441 RAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
+|+..|+++.+.... -+...|..+..+|...|++++|...|++..+ +.|+ ...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888875320 2677888888888888888888888888876 3444 4467778888888888888887665
Q ss_pred HH
Q 006640 518 KI 519 (637)
Q Consensus 518 ~~ 519 (637)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=126.80 Aligned_cols=216 Identities=11% Similarity=-0.016 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP-EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++...+++...... .+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666666555432 3666777777777777777 77777777777654 445777777777777888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc--------CCH
Q 006640 237 HKMAASGMKPDVVTYNTIATAYAQN---------GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE--------GKI 299 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 299 (637)
++.++. .|+...+..+...+... |++++|...|++..+... .+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765 35567777777777777 788888888887776543 3567777777777777 788
Q ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006640 300 KEALRFARTMKEYGVH---PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 376 (637)
++|+..|++..+.. + .+...|..+...|...|++++|...|+...+..+ .+...+..+..++...|++++|+..+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887753 3 4677888888888888888888888888777653 35667778888888888888888877
Q ss_pred HHHHH
Q 006640 377 DDMGK 381 (637)
Q Consensus 377 ~~~~~ 381 (637)
..+..
T Consensus 316 ~~~~~ 320 (474)
T 4abn_A 316 GKTKP 320 (474)
T ss_dssp TTCCH
T ss_pred ccccC
Confidence 66543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-12 Score=123.42 Aligned_cols=246 Identities=12% Similarity=0.056 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006640 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHN-------GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVI 320 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 320 (637)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 345555556666666666666666655441 111223445555555555555555555555544320
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 006640 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA------GI-KPDAHAYSI 393 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 393 (637)
+.......+....++..+...|...|++++|...++++.+. +. +....++..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112344555556666666666666666665442 11 123455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC--
Q 006640 394 LAKGYVREQEPEKAEELLMTMIES------GF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-------GVSPN-- 457 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-- 457 (637)
+...|...|++++|..+++++.+. +. +....++..+...|...|++++|...|+++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 777777777777777777776653 11 222346677777788888888888888777642 11111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 458 -----LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 458 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...+..+...+...+.+.++...++.... ..|+ ...+..++.+|.+.|++++|.++++++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11223333444555666667777766543 2233 4477888999999999999999998876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-09 Score=110.10 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH--
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK----PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFT-- 427 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-- 427 (637)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.......+ +...+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444555666666666666666665542111 113455666666777777777777777665421111 111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCH-HHH
Q 006640 428 ---TIISGWCSDGSMDRAIEVFDKMCEHGVSP---NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQK-STF 496 (637)
Q Consensus 428 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~ 496 (637)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...+++... .|..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 12233567777777777777665432211 122455666677777777777777776642 2221122 245
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 497 LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..++...|+.++|...+++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56667777777777777777776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-09 Score=107.79 Aligned_cols=161 Identities=13% Similarity=0.014 Sum_probs=78.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTS----TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN----LRTYNVLVR 221 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~ 221 (637)
..+...|++++|...+++........+.. +++.+...+...|++++|.+.+++......-..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 33445566666666666555443222221 3444455555666666666666555432100011 122444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----ChhhHHHHH
Q 006640 222 AWCNEKNITEAWNVMHKMAAS----GMK--P-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP----NGRTCGIII 290 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li 290 (637)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 556666666666666555432 111 1 12334445555666666666666666554321110 123344455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 006640 291 SGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~ 310 (637)
..+...|++++|...+++..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555666666666655554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-10 Score=113.49 Aligned_cols=310 Identities=8% Similarity=-0.033 Sum_probs=138.0
Q ss_pred hHHHHHHHHH--HHcCChhHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCChhHHH---------HHHHHHHH
Q 006640 73 RSMTKLMNSL--IERGKPQEAQAIFNNLIEG--GHKPS--LVTYTTLLAA--LTIQKRFNSIH---------SIMSQVEE 135 (637)
Q Consensus 73 ~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~ll~~--~~~~~~~~~a~---------~~~~~~~~ 135 (637)
..-+.|-..| ...+++++|..+++++... ....| ...|-.++.. ....+.+.... ..++.+..
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 3344455566 7899999999999987652 12223 3333444322 11112222222 34444332
Q ss_pred cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 136 NGMDPDS----IFFNAVINAFSESGNMEEAMDTFWKMKESGL-TPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 136 ~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
...+.+. ..+......+...|++++|...|++..+... .++ ..++..+...|...|++++|...+.+....
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 170 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1101010 1122233344555666666666666544210 011 234555555555666666665555554432
Q ss_pred CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-
Q 006640 207 GNVKP-----NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ- 280 (637)
Q Consensus 207 ~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 280 (637)
..-.+ ...+++.+...|...|++++|...|++..+.. .+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~ 219 (378)
T 3q15_A 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDR 219 (378)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHH
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHH
Confidence 10001 12344555555555555555555555544310 000000
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC----CCC
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKE-----YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR----VNP 351 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~ 351 (637)
....++..+..+|...|++++|+..+.+..+ .. +....++..+...+.+.|++++|...++...+.. .+.
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 0122334444444444444444444444433 11 1223344444445555555555555554443321 111
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 352 DVITYSTIMNAWSTAGF---MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 352 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
....+..+...|...++ +.+|+..++... ..+.....+..+...|.+.|++++|...|++..+
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12233334444444455 445555444411 0111233455666667777777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=110.23 Aligned_cols=232 Identities=12% Similarity=0.019 Sum_probs=117.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CC-ChhhHH
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGM-KPD----VVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-----QP-NGRTCG 287 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~ 287 (637)
....+...|++++|+..|++..+.-. .++ ..++..+...|...|+++.|...+.+..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666666654210 011 23455566666666666666666655543100 00 123445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHc
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTA 366 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 366 (637)
.+...|...|++++|...|.+..+.. .+.+.. ....++..+...|...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHC
Confidence 55555666666666666555554310 000000 0123344555555566
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC
Q 006640 367 GFMDKCKEIFDDMGK-----AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG----FHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 437 (637)
|++++|+..+++... .. +....++..+...|.+.|++++|...+++..+.. .+.....+..+...|...|
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 666666666655544 22 2224555666666666666666666666655421 1112233444444555555
Q ss_pred C---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 438 S---MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 438 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+ +.+|+..+++. +..|+ ...+..+...|...|++++|...|++..
T Consensus 315 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 315 DERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5 55565555542 12222 2245556666667777777777666654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-10 Score=100.23 Aligned_cols=165 Identities=8% Similarity=0.004 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445556666667777777777777665432 2355566666666666666666666666666553 4455556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666555432 244555555555666666666666666555542 3345555555555555555555
Q ss_pred HHHHHHHHHH
Q 006640 232 AWNVMHKMAA 241 (637)
Q Consensus 232 A~~~~~~~~~ 241 (637)
|...++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=123.29 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=147.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.++.+|+.|...|.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|+..|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3467889999999999999999999999998853 3368889999999999999999999999999876 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
..+|...|++++|++.|++..+..+. +..+|+.+..+|...|++++|++.|++..+.. +.+...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc
Confidence 99999999999999999999887654 67889999999999999999999999998875 5568899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAA 241 (637)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (637)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-10 Score=99.00 Aligned_cols=161 Identities=16% Similarity=0.074 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 33444555555555555555555555555544322 134444455555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544432 3344444444555555555555555555444432 2233444444444444444444444
Q ss_pred HHHHHH
Q 006640 270 VIVEME 275 (637)
Q Consensus 270 ~~~~~~ 275 (637)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.4e-10 Score=102.76 Aligned_cols=152 Identities=12% Similarity=0.026 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45566777777777777777777777777766543566666667777777777777777777777653 23556677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNV-------VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLM 465 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 465 (637)
..|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 77777777777777777777653 3444 44666666777777777777777777663 344 34566666
Q ss_pred HHHHhc
Q 006640 466 WGYSEA 471 (637)
Q Consensus 466 ~~~~~~ 471 (637)
.++...
T Consensus 161 ~~~~~~ 166 (228)
T 4i17_A 161 VLFYNN 166 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-10 Score=121.70 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++.+|+.+..++...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..|++..+..+. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57789999999999999999999999999876 667889999999999999999999999999987654 6889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|...|++++|++.|++..+.. +.+...|+.+..+|...|++++|+..|++.++.. +-+...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998875 5678899999999999999999999999998864 335788889999999999999
Q ss_pred HHHHHHHHHHH
Q 006640 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=101.67 Aligned_cols=196 Identities=10% Similarity=0.021 Sum_probs=156.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
++..+..+...+...|++++|+..|++.++...+++...+..+..++...|++++|...+++.++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4577888899999999999999999999986544788888889999999999999999999999875 556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTT-------STYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVR 221 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~ 221 (637)
.|...|++++|...|++..+..+. +. ..|..+...+...|++++|++.|++..+.. |. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999887543 45 457888888999999999999999998864 33 4677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
.|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 886554 34455555543 23444444433 344567899999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-08 Score=96.32 Aligned_cols=184 Identities=8% Similarity=-0.030 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006640 302 ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV-NPDVITYSTIMNAWSTAGFMDKCKEIFDDMG 380 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 380 (637)
|+..|++..+.+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444333 23333444555555555555555555555544332 1234445555555555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 381 KAGIKP-----DAHAYSILAKG--YVREQ--EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 381 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 13333333333 22222 555555555555443 33322222233355555555555555554432
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 452 HG-----V----SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 452 ~~-----~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.. . +-|+.++..++......|+ +|.++++++.+ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 10 0 1133344444444444554 55555555554 344443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-10 Score=106.92 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=156.7
Q ss_pred HcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 006640 84 ERGKPQEAQAIFNNLIE-------GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN------GM-DPDSIFFNAVI 149 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 149 (637)
..|++++|+..|++.++ ...+....++..+..++...|++++|...+.++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34666666666665544 122235667888899999999999999999998764 21 22356788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKES-----GL--TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE------GNVKPNLRTY 216 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~ 216 (637)
..|...|++++|...|++..+. +. +....++..+...|...|++++|...|++..+. ...+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 11 223567888999999999999999999998765 1112235778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCC
Q 006640 217 NVLVRAWCNEKNITEAWNVMHKMAAS-------GMKP-DVVTYNTIATAYAQNGEAD------QAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~-~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~ 282 (637)
..+...|...|++++|...++++.+. ...+ ....|..+...+...+... .+...+..... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 89999999999999999999988763 1112 2233333333333333322 22222222111 11223
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 283 GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..++..+...|...|++++|..+|++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=104.41 Aligned_cols=168 Identities=14% Similarity=0.043 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC-CCC----
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KP--DAHAYSILAKGYVRE-QEPEKAEELLMTMIESGF-HPN---- 422 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~---- 422 (637)
.+|+.+..+|...|++++|+..+++.++... .+ -..+++.+...|... |++++|+..|++..+... ..+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555666666666666666666666543210 00 134677778888885 888888888888765310 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL------KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-- 494 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 494 (637)
..++..+...+...|++++|+..|+++.+....... ..|..+..++...|++++|...|++..+ +.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 346777888888888888888888888875432221 1567777788888888888888888765 444422
Q ss_pred ----HHHHHHHHHH--HcCCHHHHHHHHHHHhhcc
Q 006640 495 ----TFLLLAEARR--ATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 495 ----~~~~l~~~~~--~~g~~~eA~~~~~~~~~~~ 523 (637)
.+..++.++. ..+++++|...++++....
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 2344555554 4566888888877765443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=104.39 Aligned_cols=122 Identities=16% Similarity=0.046 Sum_probs=59.4
Q ss_pred hcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006640 119 IQKRFNSIHSIMSQVEEN-------GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES------GL-TPTTSTYNTLI 184 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 184 (637)
..|++++|...+++.++. ..+....++..+...|...|++++|...|+++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345566666655555431 11122445555666666666666666666655432 11 11233455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 185 KGYGIAGKPEESVKLLDLMSRE------GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
..|...|++++|.+.|.+.... ...+....++..+...|...|++++|...++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555432 0001123344444555555555555555555444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=94.09 Aligned_cols=199 Identities=10% Similarity=0.041 Sum_probs=145.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
+...++.....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 45666667888999999999999999999877653 2367888889999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 416 ESGFHP-----NVVIFTTIISG--WCSDG--SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 416 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+. .| +..+...+..+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 35566666655 44445 899999999999764 35634444445589999999999999997754
Q ss_pred C-----CC---CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHH
Q 006640 487 F-----GV---HPQK-STFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERL 542 (637)
Q Consensus 487 ~-----g~---~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l 542 (637)
. .. .|+. .++..++.+....|+ +|.++++++....|....-.+.........++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~ 302 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDEL 302 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 2 11 2554 466688777778887 89999999988877543333333333333333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-07 Score=93.68 Aligned_cols=125 Identities=8% Similarity=-0.017 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS-DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+|...+..+.+.+..+.|..+|.++ +.. +.+...|......-.. .++.+.|..+|+...+... -++..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 55667777777788899999999998 331 2344555433332222 3369999999999987532 235556667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006640 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
..+.|+.+.|..+|+.+. .....|...++.-...|+.+.+..+++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999998862 2466788888877888999999988888754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-09 Score=101.59 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=119.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHN----GVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
...|...|++++|...|.+.... +-+++ ..+|+.+..+|.+.|++++|+..|++.++. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 44555566666666666554331 11111 234555555555555555555555554421 11
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCC
Q 006640 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA-GFMDKCKEIFDDMGKAGIKP-D----AHAYSILAKGYVREQE 403 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~ 403 (637)
..|+...+ ..++..+..+|... |++++|+..|++.++..... + ..++..+...|.+.|+
T Consensus 109 ~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 109 HRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 11211111 23566777788885 88888888888876531110 1 3567888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--
Q 006640 404 PEKAEELLMTMIESGFHPNV------VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------TFETLMWGYS-- 469 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~-- 469 (637)
+++|+..|++..+....... .+|..++.++...|++++|+..|++..+. .|+.. .+..++.++.
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999998876322211 15677888888999999999999988763 23321 3445566664
Q ss_pred hcCChhHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
..+++++|+..|+++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3566777887776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=83.92 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.++..|...|++++|..+++++.+.. +.+...+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 33344444444444444444443332 22333444444444444444444444444443221 12333444444444444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
++++|..+++++.+... .+...+..++.++.+.|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444433111 123333444444444444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-08 Score=82.97 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=8.3
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 006640 78 LMNSLIERGKPQEAQAIFNNL 98 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~ 98 (637)
+...+...|++++|+.+|+++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~ 27 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKA 27 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHH
Confidence 333333344444444444333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=96.51 Aligned_cols=24 Identities=4% Similarity=0.056 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+...|...|++++|+..|+++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555555555555555554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-08 Score=90.78 Aligned_cols=178 Identities=10% Similarity=0.059 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
.+......+.+.|++++|+..|++.+.. .| +...|... ...... .........+...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKNS--------------EISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcchh--------------hhhHHHHHHHHHHH
Confidence 3444455666777777777777777653 23 22222220 000000 00111223355566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN--IT 230 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~ 230 (637)
.+.|++++|...|++..+..+. +...+..+...|...|++++|+..|++..+.. |.+..+|..+...|...|. ..
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666666666655433 55566666666666666666666666666553 3455566666655544332 23
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.+...++.... ..|....+..+..++...|++++|...|++.++.
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33334433321 1122222333344444555666666666655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-08 Score=91.35 Aligned_cols=131 Identities=9% Similarity=0.007 Sum_probs=69.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 358 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+..+|...|++++|+..|++.++.. +.+...+..+...|...|++++|...|+++.+.. |.+..+|..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 35556666666666666666666543 2355666666666666666666666666666553 445566666666655443
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 438 S--MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 438 ~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
. .+.+...++.... ..|....+.....++...|++++|+..|++..+ +.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 2 2333444444322 112222233334445555666666666666554 445544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-09 Score=114.14 Aligned_cols=173 Identities=10% Similarity=-0.049 Sum_probs=137.5
Q ss_pred HHcCCHhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006640 329 VEIMDRDGVDEVLALMK--------EFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 329 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...|++++|.+.++... +.. +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56788888988888887 433 3456778888888999999999999999988764 4477888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
.|++++|...|++..+.. +.+...|..+..+|...|++++ +..|+++.+.+.. +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988874 5577888899999999999999 9999999886532 667888899999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 006640 481 LQIMKAFGVHPQK-STFLLLAEARRATGL 508 (637)
Q Consensus 481 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 508 (637)
|++..+ +.|+. ..+..++.++...|.
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 988765 56764 466677777766554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-08 Score=93.69 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS---LVTYTTLLAALTIQKRFNSIHSIMSQVEENGM--DPDSIF 144 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 144 (637)
.++..+-.+...+.+.|++++|+..|++++... +.+ ..++..+..++...|++++|...|+++++... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 344555555666666666666666666665532 112 44555555666666666666666666655421 111334
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 006640 145 FNAVINAFSE--------SGNMEEAMDTFWKMKES 171 (637)
Q Consensus 145 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~ 171 (637)
+..+..++.. .|++++|...|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4445555555 55555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-06 Score=88.01 Aligned_cols=360 Identities=6% Similarity=-0.023 Sum_probs=194.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 006640 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-FNSIHSIMSQVEEN-GM-DPDSIFFNAVINAFS----ESGNM 158 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g~~ 158 (637)
|+++.+..+|++.+.. .|++..|...+.-..+.++ .+....+|+.++.. |. +.+..+|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888888763 4688888877777666653 35566677776653 32 335677777776554 23567
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+.+..+|++........-...|......- .......+..++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~----------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL----------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh----------------------HHHHHHHHHHHH
Confidence 77888888887642111111222222111 1111111222211110 112222222222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 239 MAASGMKPDVVTYNTIATAYAQNG--E-----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|++++|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221100012234433333321110 0 233455666665532 23455666666666666667777777766666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHH-HHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVD-EVLALMKEF--------RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA 382 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 382 (637)
. +.+...|.. |....+.++.. .+.+..... .......+|...+....+.+.++.|..+|... +.
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred C--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 5 333322222 22111111111 111110000 00111345666666666778899999999988 32
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006640 383 GIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
...+..+|...+..-...+ +.+.|..+|+...+.- +.++..|...+......|+.+.|..+|+.+. .....|
T Consensus 315 -~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 315 -EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 2234555554443333334 6999999999988752 4456667777887788899999999999872 246678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006640 462 ETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
...+..-...|+.+.+..+++++.
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777677899998988888775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=86.49 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 006640 126 IHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLD 201 (637)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 201 (637)
|...|++..+.| ++..+..|...|...+++++|...|++..+.| ++..+..|...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44455555555555555555555555555543 44455555555544 4 5555666655
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006640 202 LMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMK-PDVVTYNTIATAYAQ----NGEADQAEEVIV 272 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 272 (637)
+..+.+ +...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|..+|.. .+++++|..+|+
T Consensus 78 ~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 555432 45555555555554 55666666666665554311 014555555555655 556666666666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 006640 273 EMEHNGVQPNGRTCGIIISGYCKE-G-----KIKEALRFARTMKEYG 313 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 313 (637)
+..+. ..+...+..|..+|... | ++++|+..|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66554 12334455555555542 2 5666666666665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-07 Score=85.04 Aligned_cols=241 Identities=10% Similarity=0.009 Sum_probs=187.1
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 006640 79 MNSLIERGKP-QEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK--RFNSIHSIMSQVEENGMDPDSIFFNAVINAF--- 152 (637)
Q Consensus 79 ~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--- 152 (637)
+.+..+.|.+ ++|+.+++.++..+ +-+..+|+.--.++...+ ++++++..++.++... +.+..+|+.-...+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 4444455555 69999999999853 336778999888888888 9999999999999876 66777777766666
Q ss_pred -Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 153 -SES---GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE--ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 153 -~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
... +++++++.+++++.+..+. +-.+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.........
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSS
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 555 7899999999999988765 8889988888888889888 9999999999875 67889998888887777
Q ss_pred CC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHHcC
Q 006640 227 KN------ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ-AEEVIVEMEHNG--VQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 227 g~------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 297 (637)
+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++...+ -..+...+..++..|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 889999999988775 4578889888888888887544 445555554432 1246678888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 298 KIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
+.++|+++++.+.+.--+.....|+...
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999987632144555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=110.25 Aligned_cols=172 Identities=12% Similarity=0.011 Sum_probs=105.9
Q ss_pred HHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 83 IERGKPQEAQAIFNNLI--------EGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
...|++++|++.|++.+ +. .+.+...+..+..++...|++++|...|+++++.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45667777777777666 32 13355566666666666777777777777666654 4556666666666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|++++|...|++..+..+. +...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777766665433 55666666666667777766 66666666653 4456666666666667777777776
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006640 235 VMHKMAASGMKPD-VVTYNTIATAYAQNG 262 (637)
Q Consensus 235 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g 262 (637)
.|++..+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 66666554 233 344555555554433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-09 Score=91.00 Aligned_cols=143 Identities=10% Similarity=0.059 Sum_probs=101.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
..+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34455677888888887776532 1234455667888888888888888888888764 667788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 006640 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI-LQIMKAFGVHPQK-STFLLLAEARRATGL 508 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 508 (637)
+|+..|+++.+..+. +...+..+...|...|+.++|.+. +++..+ +.|+. ..|.....++.+.|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 888888888875432 566788888888888888776655 466666 45653 456666666666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-07 Score=85.59 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 006640 89 QEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----NMEEAMDT 164 (637)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 164 (637)
.+|++.|++..+. .++.++..+...+...+++++|...|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577788888874 477888888888988999999999999998865 67778888888887 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHh----cCCHHHHH
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPN---LRTYNVLVRAWCN----EKNITEAW 233 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~ 233 (637)
|++..+.| +..++..|...|.. .+++++|++.|++..+.+ ++ ...+..|...|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998865 67788888888877 789999999999998865 32 7888899999988 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 006640 234 NVMHKMAASGMKPDVVTYNTIATAYAQN-G-----EADQAEEVIVEMEHNGV 279 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 279 (637)
.+|++..+. ..+...+..|..+|... | ++++|..+|++..+.|.
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999876 23455677788887654 3 89999999999887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=89.61 Aligned_cols=160 Identities=10% Similarity=0.092 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 153 (637)
+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++++.+.. + +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHH
Confidence 3344555666666666666666654421 2345556666666666666666666666554432 2 33322221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..+....|...|++..+..+. +...+..+...+...|++++|...|+++.+...-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 111112234444444443221 3444444444444444444444444444443210111234444444444444444444
Q ss_pred HHHHH
Q 006640 234 NVMHK 238 (637)
Q Consensus 234 ~~~~~ 238 (637)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=4e-08 Score=86.78 Aligned_cols=160 Identities=11% Similarity=0.028 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG-YGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~ 189 (637)
..+...+...|++++|...|+++++.. |.+...+..+...+...|++++|...|++..+..+ +...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344455566666666666666655543 44556666666666666666666666666655432 33322222111 112
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 268 (637)
.+...+|+..|++..+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334555555555543 3345556666666666666666666666655543221 2334555555566666666666
Q ss_pred HHHHHHH
Q 006640 269 EVIVEME 275 (637)
Q Consensus 269 ~~~~~~~ 275 (637)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-08 Score=92.65 Aligned_cols=164 Identities=11% Similarity=0.065 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH-H
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV-L 219 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-l 219 (637)
+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++.... |+...... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHH
Confidence 3444444555555555555555555555554332 44455555555555555555555555554432 33222221 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCC
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-NGRTCGIIISGYCKEGK 298 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 298 (637)
...+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 222344445555555555555442 2244455555555555555555555555555442211 13445555555555555
Q ss_pred HHHHHHHHHHH
Q 006640 299 IKEALRFARTM 309 (637)
Q Consensus 299 ~~~A~~~~~~~ 309 (637)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-07 Score=85.75 Aligned_cols=187 Identities=12% Similarity=0.019 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK-P-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDS---IFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 146 (637)
...+..+...+.+.|++++|+..|++++...+. | ...++..+..++...|++++|...|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 445666778889999999999999999874322 1 13577888899999999999999999998764 2222 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006640 147 AVINAFSE------------------SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 147 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+..++.. .|++++|...|+++.+..+. +..++....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 34566666666666654322 222222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|++++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01124567788889999999999999887632111 24677888899999999999999998887643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-06 Score=82.27 Aligned_cols=223 Identities=9% Similarity=0.042 Sum_probs=117.6
Q ss_pred HhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc
Q 006640 118 TIQKRF-NSIHSIMSQVEENGMDPDSIFFNAVINAFSESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGY----GIA 190 (637)
Q Consensus 118 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~ 190 (637)
.+.|.+ ++|+.++++++..+ |.+..+|+.--..+...+ ++++++..++.+....++ +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 334433 56777777776665 555666666666666666 666666666666665443 445555544444 333
Q ss_pred ---CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 191 ---GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT--EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 191 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+++++++++++++.+.. +.|..+|+--.-.+.+.|.++ ++++.++++.+.. ..|-..|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~------------- 184 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWS------------- 184 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHH-------------
T ss_pred cccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHH-------------
Confidence 45566666666665543 445555555555555555544 5555555554433 12333333
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH-HH
Q 006640 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK------IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG-VD 338 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~ 338 (637)
.....+.+.+. ++++++.+++++... +.|...|+.+...+.+.|+... +.
T Consensus 185 ----------------------~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 185 ----------------------HRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp ----------------------HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred ----------------------HHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHH
Confidence 33333333232 566666666666554 4566666666666655555332 33
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 339 EVLALMKEFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 339 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
.+...+.+.+ -..++..+..+..+|.+.|+.++|.++++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3444333221 123445555555555555555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-07 Score=86.39 Aligned_cols=186 Identities=9% Similarity=-0.047 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 006640 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD--VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA--HAYSI 393 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 393 (637)
...+..+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|+++++....... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44555566667777888888888877766432211 345666777777788888888888777765322111 23444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 394 LAKGYVR------------------EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 394 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
+..++.+ .|++++|...|+++++.. |.+...+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH------
Confidence 4444443 234455555555554431 22222221111000 000000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 456 PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK----STFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
......+...+...|++++|+..|+++.+ ..|+. ..+..++.++.+.|+.++|...++.+....|
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456778889999999999999876 33442 4678889999999999999999988876644
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=87.63 Aligned_cols=143 Identities=7% Similarity=-0.019 Sum_probs=95.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (637)
..+...|++++|+..|+...... +.+...+..+...|...|++++|...|++.++.. +.+..+|..+...|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445677777877777765421 1133455566777777888888888888777765 556777777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKL-LDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
+|+..|++..+..+. +..+|..+...|.+.|+.++|.+. +++..+.. |.+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 888888777776543 566777777777777777665554 46666643 445666666666655555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=91.63 Aligned_cols=158 Identities=6% Similarity=-0.033 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHH
Q 006640 322 NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI-LAKGYVR 400 (637)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 400 (637)
..+...+...|++++|...++...+..+ .+...+..+...+...|++++|...++.+... .|+...... ....+..
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHh
Confidence 3333333444444444444444433321 13333444444444444444444444443332 122221111 1112333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.++.++|...+++..+.. |.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.++|..
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 344444444444444432 3344444444444444444444444444444432110 12344444444444444444444
Q ss_pred HHHH
Q 006640 480 ILQI 483 (637)
Q Consensus 480 ~~~~ 483 (637)
.+++
T Consensus 277 ~~r~ 280 (287)
T 3qou_A 277 XYRR 280 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=100.88 Aligned_cols=154 Identities=12% Similarity=-0.027 Sum_probs=118.6
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006640 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477889999999887765 3467889999999999999999999999998864 44688899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 006640 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA---RQPWRAEEILQIMKAF 487 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 487 (637)
+++..+.. +.+...+..+..+|...|++++|++.|+++.+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 66788999999999999999999999999988643 2677888999999999 9999999999998774
Q ss_pred C
Q 006640 488 G 488 (637)
Q Consensus 488 g 488 (637)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=101.07 Aligned_cols=154 Identities=8% Similarity=-0.091 Sum_probs=110.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 85 RGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 164 (637)
.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887642 3367788888888888889999998888888765 56678888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAA 241 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 241 (637)
|++..+..+. +...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8888876543 67788888888888888888888888888764 45677888888888888 888888888888877
Q ss_pred CC
Q 006640 242 SG 243 (637)
Q Consensus 242 ~g 243 (637)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=92.17 Aligned_cols=155 Identities=12% Similarity=-0.023 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAG--I-KP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFH-PN----VV 424 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 424 (637)
++..+...|...|++++|+..|++.++.. . .+ ...++..+...|.. |++++|+..|++..+.... .+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 45555566666667776666666654320 0 11 13456677777777 8888888888877653100 01 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----H--
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ----K-- 493 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~-- 493 (637)
++..+...|...|++++|+..|++..+. +..+. ...+..++.++...|++++|...|++.. +.|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCCCCCHHH
Confidence 6777888888888888888888888753 11111 2256666777777889999999888876 2332 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 006640 494 STFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~ 514 (637)
.....++.++ ..|+.+.+..
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 1233444444 5667665555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=90.40 Aligned_cols=185 Identities=9% Similarity=-0.009 Sum_probs=110.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---CC--CHHHHHHHHH
Q 006640 292 GYCKEGKIKEALRFARTMKEY----GVHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV---NP--DVITYSTIMN 361 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~ 361 (637)
.|...|++++|...|.+..+. +-.. -..+|+.+...|...|++++|...+++..+... .+ -..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555444321 1000 123455555666666666666666665433210 11 1345667777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAGIKP-----DAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPN-VVIFTTIIS 431 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~ 431 (637)
.|.. |++++|+..|++.+...... ...++..+...|.+.|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7777 88998888888876531111 1467788889999999999999999988763 11111 236667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CC--HHHHHHHHHHHHhcCChhHHHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCEHGVS--PN--LKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
++...|++++|+..|++.. .... .. ......++.++ ..|+.+...+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888899999999999988 4211 11 12344455554 4566555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.4e-06 Score=78.83 Aligned_cols=231 Identities=8% Similarity=0.030 Sum_probs=169.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
+.+-....+.+..++|+++++.++..+ +-+..+|+.--.++...+ ++++++..++.++... +.+..+|+.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333333444556679999999999853 347778998888888888 5999999999999876 7788899988888877
Q ss_pred c-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006640 155 S-G-NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE--------ESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 155 ~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
. + ++++++.+++++.+..+. +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 7 7 889999999999988755 7888887777776666666 8999999999875 678999999988888
Q ss_pred hcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHC
Q 006640 225 NEKN-------ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA--------------------DQAEEVIVEMEHN 277 (637)
Q Consensus 225 ~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~ 277 (637)
+.+. ++++++.+++++... +-|...|+.+-..+.+.|.. ........++...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 8776 788999998888764 44778888777777766653 1222222222221
Q ss_pred C-----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 278 G-----VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 278 ~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
. -.+....+..+++.|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 0245566667777777777777777777777543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-07 Score=78.72 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|+..|+++.+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 4456666666777777777777777776653 556667777777777777777777777777764322 45566677777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 468 YSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
|...|++++|...|++..+ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 7777777777777777665 345543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-06 Score=79.46 Aligned_cols=165 Identities=9% Similarity=-0.021 Sum_probs=124.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 006640 358 TIMNAWSTAGFMDKCKEIFDDMGKAGI-KPDA----HAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFT 427 (637)
Q Consensus 358 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~ 427 (637)
..+..+...|++++|..+++...+... .|+. ..+..+...|...|++++|+..|+++.+... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677889999999999999887421 1221 2334567777788899999999999987422 223 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCE----H-GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTF 496 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 496 (637)
.++..|...|++++|+..|+++.+ . +..+.. .++..+...|...|++++|+.++++..+ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 222222 3788899999999999999999988753 333333 5688
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhhc
Q 006640 497 LLLAEARRATGL-TKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~-~~eA~~~~~~~~~~ 522 (637)
..++.++.+.|+ +++|...++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 69999999887543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-07 Score=74.83 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+......|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++|+..|++.++.+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345556666666666666666666666553 45566666666666666666666666666666432 2455666666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
...|++++|++.|++..+ +.|+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~ 113 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPS 113 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHCCCHHHHHHHHHHHHH--HCcC
Confidence 666666666666666655 4444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-06 Score=79.60 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 359 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 438 (637)
+...+...|++++|+..|++.. .|+..++..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444455555555444432 2344444445555555555555555555544432 3344444445555555555
Q ss_pred HHHHHHHHHHHHH
Q 006640 439 MDRAIEVFDKMCE 451 (637)
Q Consensus 439 ~~~A~~~~~~m~~ 451 (637)
+++|+..|+++.+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-06 Score=71.55 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
.+..+...|.+.|++++|+..|++.++.. +.+..+|..+..++...|++++|+..+++.++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 33344444444444444444444443321 1233344444444444444444444444444332 233333444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~ 170 (637)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-06 Score=79.62 Aligned_cols=160 Identities=9% Similarity=0.018 Sum_probs=79.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PD----VVTYNTI 254 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 254 (637)
+..+...|++++|..++++........|+. ..+..+...+...+++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566666666666666665532111221 12223445555556666666666666653211 11 2245666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----C-CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEH----N-GVQP-NGRTCGIIISGYCKEGKIKEALRFARTMKEY----GVHPN-LVIFNL 323 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 323 (637)
...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666542 1 1111 1234555666666666666666666555431 11111 334444
Q ss_pred HHHHHHHcCC-HhHHHHHHHH
Q 006640 324 LIKGFVEIMD-RDGVDEVLAL 343 (637)
Q Consensus 324 ll~~~~~~~~-~~~a~~~~~~ 343 (637)
+..++...|+ +++|.+.+++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHH
Confidence 4444444442 3444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-06 Score=76.19 Aligned_cols=126 Identities=15% Similarity=0.043 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 146 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+...+...|++++|...|++.. .|+..+|..+...|...|++++|+..|++..... +.+...|..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence 344455556666666666665553 3455566666666666666666666666665543 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 226 EKNITEAWNVMHKMAASGMK--------------P-DVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|++++|+..|++..+.... | ....+..+..++...|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666666553211 0 1245556666666666666666666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.2e-05 Score=74.78 Aligned_cols=191 Identities=8% Similarity=0.017 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
++.+..........++|+.++++++..+ +.+..+|+.--..+...| .+++++..++.+....++ +..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3333333344445568888888888876 667777888777777777 488888888888887655 6777877777766
Q ss_pred hc-C-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 189 IA-G-KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 189 ~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
.. + ++++++++++++.+.. +.|..+|+--.-.+.+.+.++. .+. ..+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~--------------~~~-------------~~~~e 185 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGR--------------ISE-------------AQWGS 185 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTC--------------CCH-------------HHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccc--------------cch-------------hhHHH
Confidence 66 6 7788888888887764 5677777765555544443330 000 00124
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK-------IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
+++.++++.+..+ .|...|+.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|.
T Consensus 186 ELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 186 ELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 4444444444332 244444444444444433 566777777766554 4566666665555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-06 Score=74.45 Aligned_cols=130 Identities=11% Similarity=0.018 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 445566666777777777777777776653 45667777777777777777777777777776532 2556677777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHH--HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTF--LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~--~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...|++++|...|++..+. .|+ ...+ ...+..+...|++++|...+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7777777777777777652 232 2333 33344466777888888887776544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.5e-06 Score=73.87 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
|..+...+...|++++|...|++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al 40 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAI 40 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333344444444444444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=81.30 Aligned_cols=192 Identities=8% Similarity=-0.066 Sum_probs=109.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHhHHHHHHHHHHhC------------CC------
Q 006640 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLL-------IKGFVEIMDRDGVDEVLALMKEF------------RV------ 349 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~------------~~------ 349 (637)
..++...|.+.|.++.... +.....|..+ ...+...++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777664 4455666666 34444444444444444433321 10
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 006640 350 --NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVI 425 (637)
Q Consensus 350 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 425 (637)
..-..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0002233445556667777777777777665543 333355555566677777777777776554321 110 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 56666677777777777777777664322143 23455566667777777777777777765 3454
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-06 Score=81.42 Aligned_cols=168 Identities=8% Similarity=-0.017 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AHAYSILAKGYVREQEPEKAEELLMTMIESGF---HPN--VV 424 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 424 (637)
.+...+..+...|++++|.+.+....+...... ...+..+...|...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334455666778888888888877766432211 12234455667778899999999888875321 111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-H
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPN-----LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-K 493 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~ 493 (637)
+++.+...|...|++++|+..|+++.+. ...|+ ..++..+..+|...|++++|+.++++..+ .+.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999888731 01122 25788888899999999999999988753 122222 5
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhhc
Q 006640 494 STFLLLAEARRATGLTKEA-KRILSKIKNK 522 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 522 (637)
..|..++.++.+.|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788889999999999999 7778777543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-06 Score=69.29 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...|..+...+...|++++|+..|+++.... +.+..++..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555556666666666665555432 2244455555555555555555555555555443 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006640 152 FSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~ 171 (637)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.6e-06 Score=78.35 Aligned_cols=166 Identities=8% Similarity=-0.060 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KPD--AH 389 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 389 (637)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|+..+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777766654322111 2233455667788899999999998875321 112 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIES--GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-L 458 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~ 458 (637)
+++.+...|...|++++|...|+++.+. ..+.+ ..++..++..|...|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999988731 01222 258889999999999999999999998753 11111 5
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006640 459 KTFETLMWGYSEARQPWRA-EEILQIMK 485 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 485 (637)
.+|..+..+|...|+.++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77777764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-07 Score=79.68 Aligned_cols=118 Identities=9% Similarity=0.084 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG-WCSDGSM--DRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A 442 (637)
.|++++|+..++...+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 2344555555555555555555555555555442 3344555555555 4455555 555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..|+++.+... .+...+..+...+...|++++|...|+++.+
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555321 1344555555555555555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-07 Score=81.13 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=105.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 438 (637)
...|++++|.++++.+.. .......++..+...|...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777775554433 22234667777788888888888888888877651 11 1234567778888888888
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcC
Q 006640 439 MDRAIEVFDKMCEH----GVSP--NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 439 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g 507 (637)
+++|+..+++..+. +-.| ....+..+...+...|++++|...+++..+ .+..+. ...+..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887653 2111 133577778888888999999988887753 121111 224577888899999
Q ss_pred CHHHHHHHHHHHhhc
Q 006640 508 LTKEAKRILSKIKNK 522 (637)
Q Consensus 508 ~~~eA~~~~~~~~~~ 522 (637)
++++|.+.+++....
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-07 Score=76.75 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++.+..+ .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455556666666677777777776666553 45666666666666667777777777766665432 14456666666
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 006640 467 GYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666777777666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-06 Score=68.47 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 108 VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 108 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+. +..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 344444455555555555555555554443 334444444555555555555555555554443221 344444444445
Q ss_pred HhcCChHHHHHHHHHHHh
Q 006640 188 GIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~ 205 (637)
...|++++|...|+++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555544444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-06 Score=70.60 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=94.8
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.++..|..+...+.+.|++++|+..|++..... +.+..++..+..++...|++++|...++++.+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345677888889999999999999999999988753 3477788888888888889999999888888765 55677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
.+...+...|++++|...|++..+..+. +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 8888888888888888888888775432 4456666666665544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=73.88 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...+..+...+.+.|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34566777778888899999999998888764 4478888888888899999999999999888874 567788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLK 459 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (637)
+|...|++++|+..|+++.+.. |+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999888753 5553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=7e-07 Score=85.37 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006640 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVR 221 (637)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 221 (637)
...+..+...+.+.|++++|...|++..+..+. +...|..+...|...|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344444555555555555555555555544322 44555555555555555555555555555442 334555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006640 222 AWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~ 241 (637)
++...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-06 Score=79.91 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 006640 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD--VVTYNTIATA 257 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~ 257 (637)
+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 4445666677777777777777766543 433355566667777777777777776554321 111 2355667777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 258 YAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777777777777777764322132 234556666777778888888888777765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-06 Score=70.84 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPN----LKTFE 462 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 462 (637)
..+..+...|.+.|++++|+..|++.++.. |.+..+|..+..+|...|++++|+..|++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777777777777777776653 55666777777777777777777777777665311 111 12455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006640 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
.+..++...|++++|++.|++..+ ..|+.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 666666777777777777776655 34555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=78.80 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=92.8
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC
Q 006640 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN----GM-DPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 157 (637)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888888885555543 22235667777778888888888888888877652 11 1224456667777777788
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcC
Q 006640 158 MEEAMDTFWKMKES----GLTP--TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN----LRTYNVLVRAWCNEK 227 (637)
Q Consensus 158 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g 227 (637)
+++|...+++..+. +-.+ ...++..+...+...|++++|...+++.........+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88777777765543 1011 1334566667777777777777777665432100111 223455556666666
Q ss_pred CHHHHHHHHHHHH
Q 006640 228 NITEAWNVMHKMA 240 (637)
Q Consensus 228 ~~~~A~~~~~~~~ 240 (637)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-06 Score=69.20 Aligned_cols=120 Identities=13% Similarity=-0.008 Sum_probs=76.7
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+.+..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 345566666777777777777777777776532 2356666666667777777777777777766654 44566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
..+...|++++|...|++..+..+. +...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666667777777766666655432 45555556666555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-07 Score=86.31 Aligned_cols=97 Identities=7% Similarity=-0.005 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|...+++..+..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344444455555555555555555555443 334555555555555555555555555555554322 44555555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006640 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|+..|.+..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555666666555555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.9e-06 Score=70.26 Aligned_cols=98 Identities=4% Similarity=-0.022 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+..+. +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34445555555555555555555555555443 334445555555555555555555555555443322 3444444555
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006640 186 GYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~ 205 (637)
+|...|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-06 Score=69.33 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555556666666666666666666543 445566666666666666666666666666654321 345566666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006640 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=75.89 Aligned_cols=121 Identities=7% Similarity=0.057 Sum_probs=73.6
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--H
Q 006640 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FSESGNM--E 159 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 159 (637)
...|++++|+..|+..+... +.+...|..+..++...|++++|...|+++.+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 46677777777777766542 3356667777777777777777777777766654 4455566666666 5566666 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+|...|++..+..+. +...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666655432 4555666666666666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.3e-06 Score=68.76 Aligned_cols=116 Identities=14% Similarity=0.028 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++..... +.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHH
Confidence 3444444444445555555555444443221 34444445555555555555555555544432 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554432 1234444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.4e-05 Score=72.85 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 006640 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG--FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE-PEKAEELL 411 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 411 (637)
+++..++..+....+ .+..+|+.-...+...+ .+++++.++..+.+.. +.|..+|+--...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444444332 24444444444444444 2555555555555543 2345555554444455555 35666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 006640 412 MTMIESGFHPNVVIFTTIISGWCSD--------------GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA------ 471 (637)
Q Consensus 412 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 471 (637)
.++++.. +.|...|+.....+... +.++++++.+++++...+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 6665543 45555555555444433 3456666777666664322 455555444444443
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCH
Q 006640 472 -----RQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 472 -----g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+.++++++.++++.+ +.|+.
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred chHHHHHHHHHHHHHHHHHh--hCccc
Confidence 346677777777776 55664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00018 Score=69.25 Aligned_cols=182 Identities=6% Similarity=0.001 Sum_probs=120.5
Q ss_pred hhHHHHHHHHH---HHcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcC
Q 006640 72 VRSMTKLMNSL---IERGKPQ-EAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR----------FNSIHSIMSQVEENG 137 (637)
Q Consensus 72 ~~~~~~l~~~~---~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 137 (637)
+..|..+.+.+ .+.|.+. +|+.+++.++..+ +-+..+|+.--.++...+. +++++.+++.++...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44555554433 4566665 7899999988743 2356667766555544333 567777888777765
Q ss_pred CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCHH
Q 006640 138 MDPDSIFFNAVINAFSESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK-PEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
+.+..+|+.-...+.+.+ .+++++.+++++.+..+. |..+|+.-.-.+...|. ++++++.++++.+.. +.|..
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S 180 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS 180 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH
Confidence 667778887777777777 478888888888877654 77777777777777777 478888888887765 56777
Q ss_pred HHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 215 TYNVLVRAWCNE--------------KNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 215 ~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
.|+.....+.+. +.++++++.+.+..... +-|...|+-+-..+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 777776665554 34666777777666543 335555654433333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=74.04 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|...|++..+..+. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33344444444444444444444444433 334444444444444445555555555444443322 3344444444445
Q ss_pred hcCChHHHHHHHHHHHh
Q 006640 189 IAGKPEESVKLLDLMSR 205 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~ 205 (637)
..|++++|+..|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-06 Score=81.92 Aligned_cols=87 Identities=7% Similarity=-0.144 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.+|..+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. |.+...+..+..+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 44555555555555555555555555554322 44555555555555555555555555555543 3345555555555
Q ss_pred HHhcCCHHHH
Q 006640 223 WCNEKNITEA 232 (637)
Q Consensus 223 ~~~~g~~~~A 232 (637)
+...|+.++|
T Consensus 274 ~~~~~~~~~a 283 (336)
T 1p5q_A 274 QQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.4e-06 Score=81.46 Aligned_cols=131 Identities=13% Similarity=0.013 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN---------------VVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
...+..+...|.+.|++++|...|++..+.. +.+ ..+|..+..+|.+.|++++|+..|+++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555442 112 466777777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHHhhc
Q 006640 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEA-KRILSKIKNK 522 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 522 (637)
.. .+...+..+..+|...|++++|+..|++..+ +.|+ ...+..+..++.+.|+.++| ..++++|..+
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2566777777777777888888877777766 3444 44666777777777777777 4456666544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-06 Score=71.63 Aligned_cols=93 Identities=10% Similarity=-0.041 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++.+..+ .+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344444555555555555555555442 34455555555555555555555555555554332 133444455555555
Q ss_pred cCChhHHHHHHHHHH
Q 006640 471 ARQPWRAEEILQIMK 485 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~ 485 (637)
.|++++|...|++..
T Consensus 99 ~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 99 LGDLDGAESGFYSAR 113 (142)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=66.23 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 353 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777888888888888888887764 4467888888888899999999999999888764 5677888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006640 433 WCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~ 452 (637)
+...|++++|+..|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999888774
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-06 Score=68.70 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPN----LKTFE 462 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 462 (637)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|+++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666677777777776666553 44566666666667777777777777766665321 112 45566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+..++...|++++|...|+++.+ ..|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 666667777777777777766655 334544444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-05 Score=62.99 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
..+...+...|++++|+..|++..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~ 31 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAI 31 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 333333444444444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-05 Score=62.85 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 45677888899999999999999999998875 668889999999999999999999999999887543 6788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
++...|++++|.+.|++..+.. +.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 9999999999999999998864 4566666665544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=65.26 Aligned_cols=97 Identities=13% Similarity=-0.053 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555555555555555555555555555442 334555555555555555555555555555553321 3445555555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 006640 467 GYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~ 485 (637)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-06 Score=67.15 Aligned_cols=92 Identities=7% Similarity=-0.049 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..+. +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34445555566666666665555542 345555555555555666666666666655554321 3445555555555556
Q ss_pred ChhHHHHHHHHHHH
Q 006640 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666555555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-05 Score=68.61 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4455566666666677777777776666653 445666666666666677777777777666664322 45566666666
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 006640 468 YSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~ 486 (637)
|...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-05 Score=68.44 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=56.7
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
.+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..++++++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345555666666666666666666666665532 2245555555555666666666666666555543 34455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006640 150 NAFSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~ 171 (637)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555555555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-05 Score=70.25 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD---------------AHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
+..+...+...|++++|+..|.+.++...... ..++..+..+|.+.|++++|+..+++..+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 34444445555555555555555554311100 1445555555556666666666666555542 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006640 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
.+...+..+..+|...|++++|+..|++..+... -+...+..+..++...++.+++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666666666655555321 13344444444444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=70.44 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----------------VTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
....+..+...+.+.|++++|+..|++.+..... +. .+|..+..++...|++++|...+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4555667777777888888888888877763211 11 344444444444444554444444444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 135 ENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 135 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...+
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 432 333444444444444444444444444444443221 3333444444433333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-05 Score=66.33 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...+..+...+.+.|++++|+..|++++... +.+...|..+..++...|++++|...|+++++.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3344444444455555555555555544421 2244444444444444455555555554444443 3334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006640 152 FSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~ 170 (637)
|...|++++|...|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-05 Score=64.11 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQV 133 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 133 (637)
+..|...+.+.|++++|+..|++.++.. +.++.+|..+..++...|++++|+..+++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444443321 113333333334444444444444433333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=65.86 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF--HPN----VVIFT 427 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 427 (637)
..+..+...+...|++++|...+....+.. +.+..++..+...|...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777778888888888888877653 34677777888888888888888888888776421 122 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+..++...|++++|...|+++.+.. |+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 88888888888888888888888743 565555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=64.39 Aligned_cols=96 Identities=16% Similarity=0.049 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ---KSTFLLLA 500 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~ 500 (637)
..|..+...+...|++++|+..|+++.+... .+...+..+..++...|++++|...|++..+ ..|+ ...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHHH
Confidence 3444455555555555555555555554321 2344555555555555555555555555544 2232 34555555
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhc
Q 006640 501 EARRAT-GLTKEAKRILSKIKNK 522 (637)
Q Consensus 501 ~~~~~~-g~~~eA~~~~~~~~~~ 522 (637)
.++.+. |++++|.+.++++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 6666666655555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.2e-05 Score=64.44 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=85.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS----LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF 144 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (637)
..+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 456778888899999999999999999999874 455 5677777888888888888888888887764 556777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+..+..+|...|++++|...|++..+..+. +...+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 777888888888888888888887775432 344444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=65.00 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHH
Q 006640 76 TKLMNSLIERGKPQEAQAIFNN 97 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~ 97 (637)
..+...+...|++++|+..|+.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~ 34 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGR 34 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHH
Confidence 3333333333333333333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=63.33 Aligned_cols=97 Identities=14% Similarity=0.005 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP--DSIFFNAVIN 150 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 150 (637)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445566666666666666666665532 2345555555566666666666666666655543 33 4555555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC
Q 006640 151 AFSES-GNMEEAMDTFWKMKES 171 (637)
Q Consensus 151 ~~~~~-g~~~~A~~~~~~m~~~ 171 (637)
.+... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5666666655555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-05 Score=63.58 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 353 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 444444455555555555555555555443 223 3444445555555555555555555554432 334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=66.89 Aligned_cols=134 Identities=13% Similarity=-0.003 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSP-NL 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 458 (637)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566667777777788877777777654310 111 136677778888888888888888887642 1111 13
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 459 KTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..+...+...|++++|...+++..+ .+..+. ...+..+..++...|++++|.+.+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567778888888999999888887753 221111 235677888889999999999998887544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=63.04 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
.+..+...+.+.|++++|+..|++.+... +.+...|..+..++...|++++|+..|++.++.. +.+...+..+...|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35566677777888888888887777642 3366777777777777777777777777777765 556667777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006640 154 ESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~ 171 (637)
..|++++|+..|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-05 Score=66.52 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-------C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIES-------G----------FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+......+.+.|++++|+..|.+.++. . .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555666666666666555442 0 0122345566666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.. .+...|..+..+|...|++++|...|++..+
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 2445566666666666666666666666555
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-05 Score=78.17 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPN---------------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
..+..+...|.+.|++++|...|++.++.. +.+ ...|..+..+|.+.|++++|+..|+++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555555666666666666666655532 222 5778888888889999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH-HHHHH
Q 006640 454 VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR-ILSKI 519 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~-~~~~~ 519 (637)
. .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2677888888899999999999999988877 556544 67778888888888877764 34444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.1e-05 Score=62.62 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP------NL-----KTFETLMWGYSEARQPWRAEEILQIMKAF-----G 488 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g 488 (637)
.+......+...|++++|+..|++.++..... +. ..|..+..++...|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666532110 22 27777888888888888888888877762 1
Q ss_pred CCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 489 VHPQKS-TF----LLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 489 ~~p~~~-~~----~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+.|+.. .| .....++...|++++|+..+++..+..|
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 277754 67 8888999999999999999888766644
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=8.5e-05 Score=78.10 Aligned_cols=188 Identities=7% Similarity=-0.007 Sum_probs=131.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE----------PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
..++|++.++.++... +.+..+|+.-...+.+.|+ ++++++.++++.+.. +.+..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4467788888888764 3456777776666666666 899999999998875 778899999999999999
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 438 --SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 438 --~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~ 514 (637)
+++++++.++++.+.... |...|..-..++.+.| .++++++.++++.+.... +...|.....++.+.+...++.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~- 198 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG- 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS-
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc-
Confidence 779999999999987654 7888998888888888 888999999888764333 4567777776666542210000
Q ss_pred HHHHHhhccccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006640 515 ILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
.......+..+.+...+.++++++|++.+ ++..+.+++...+++++
T Consensus 199 --------~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 --------PQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp --------SCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred --------ccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence 00000012234455556666777777655 34557777877777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.3e-05 Score=60.96 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLMWGY 468 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~ 468 (637)
...+.+.|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.... + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344445555555555555554432 1222 34444555555555555555555555443211 1 33444445555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006640 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00024 Score=72.38 Aligned_cols=198 Identities=12% Similarity=-0.009 Sum_probs=118.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNG----------------RTCGIIISGYCKEGKIKEALRFARTMKEYG-VHP 316 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 316 (637)
-...+.+.|++++|++.|..+.+....... ..+..++..|.+.|++++|.+.+.++...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 355677889999999999888876432211 125667888888888888888887775421 111
Q ss_pred CHH----HHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC
Q 006640 317 NLV----IFNLLIKGFVEIMDRDGVDEVLALMKE----FRVNPD-VITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIK 385 (637)
Q Consensus 317 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~ 385 (637)
+.. +.+.+...+...|+.+.+..++..... .+..+. ..++..+...|...|++++|..+++.+... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 122222233345667777777666432 222222 345666777777777777777777766542 111
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 386 ---PDAHAYSILAKGYVREQEPEKAEELLMTMIES--GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 386 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
....++..++..|...|++++|..++++.... .+..+ ...+..++..+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11356666777777777777777777765532 11111 23455555666677777777777776655
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00027 Score=71.94 Aligned_cols=196 Identities=9% Similarity=-0.024 Sum_probs=101.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-C
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPN----------------LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-P 351 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 351 (637)
-...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567788888888888888877542211 123555666677777777777666665432111 1
Q ss_pred CHH----HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 006640 352 DVI----TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIES--GF- 419 (637)
Q Consensus 352 ~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~- 419 (637)
+.. +.+.+...+...|+.+.+..++..... .+..+ -..++..|+..|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 122222233345566666666665432 11111 1345555666666666666666666655432 10
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 420 -HP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GV-SP-N--LKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 420 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..++..+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 1234555566666666666666666655421 11 11 1 123444445555566666666555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.2e-05 Score=75.31 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006640 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLA 500 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 500 (637)
+..+|..+..+|.+.|++++|+..++++++... .+...+..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 445677777777777777777777777776532 2556777777777777777777777777765 3443 44555666
Q ss_pred HHHHHcCCHHHHHH
Q 006640 501 EARRATGLTKEAKR 514 (637)
Q Consensus 501 ~~~~~~g~~~eA~~ 514 (637)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=64.13 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAG--IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
.|++++|+..|++.++.+ -+.+..++..+...|.+.|++++|...|++..+.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234556666666666666666666666666653 445666666666666666666666
Q ss_pred HHHHHHHHC
Q 006640 444 EVFDKMCEH 452 (637)
Q Consensus 444 ~~~~~m~~~ 452 (637)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=4e-05 Score=65.56 Aligned_cols=133 Identities=14% Similarity=0.013 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-PD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----V 423 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 423 (637)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666677777777777777766542100 11 24677778888888888888888887664210 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSP-NLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777888888999999999998887642 2111 134677788888999999999999888754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00029 Score=57.56 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=10.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 006640 79 MNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
...+.+.|++++|+..|+.+..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~ 30 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLE 30 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.97 E-value=8.8e-05 Score=76.14 Aligned_cols=88 Identities=8% Similarity=-0.090 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..|..+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 45555556666666666666666666555432 45556666666666666666666666665543 3344555556666
Q ss_pred HHhcCCHHHHH
Q 006640 223 WCNEKNITEAW 233 (637)
Q Consensus 223 ~~~~g~~~~A~ 233 (637)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.6e-05 Score=80.46 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=107.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
..+.+.|++++|++.+++.++.. +.+..++..+...|.+.|++++|++.+++..+.. +.+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567788999999998888763 3468888889999999999999999999998874 667888889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHHHC-----CC-----CCCHHHHH
Q 006640 441 RAIEVFDKMCEHGVSPNLKTFETLMWG--YSEARQPWRAEEILQ-----------IMKAF-----GV-----HPQKSTFL 497 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~m~~~-----g~-----~p~~~~~~ 497 (637)
+|++.|+++.+.... +...+..+..+ +...|++++|++.++ +..+. +. ..+...+.
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 999999998875322 33345555444 778899999999887 32210 00 12344566
Q ss_pred HHHHHHHHcCCHH--HHHHHHHHH
Q 006640 498 LLAEARRATGLTK--EAKRILSKI 519 (637)
Q Consensus 498 ~l~~~~~~~g~~~--eA~~~~~~~ 519 (637)
.++..+...+.+. ++..++.++
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a 194 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQV 194 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 6777777766543 333355544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00028 Score=59.35 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHP-------NV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEH----- 452 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 452 (637)
.+......+.+.|++++|+..|++.++.. +. +. ..|..+..++...|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455566667777777777777776642 11 22 37888888888888888888888888874
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 006640 453 GVSPNL-KTF----ETLMWGYSEARQPWRAEEILQIMKA-----FGVHPQKST 495 (637)
Q Consensus 453 ~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 495 (637)
.+.|+. ..| .....++...|++++|+..|++..+ .|+.+....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 114654 467 8888899999999999999988753 455554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=63.11 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKA--------G---------IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
+......+.+.|++++|+..|...+.. . -+.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444445555555555555555554442 0 01234678888889999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
+.+...|..+..+|...|++++|+..|++..+..
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 6678899999999999999999999999998853
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-05 Score=63.89 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 86 GKPQEAQAIFNNLIEGG--HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 163 (637)
|++++|+..|++.++.+ .+.+..++..+..++...|++++|...|+++++.. +.+..++..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555554421 01123344444444444444444444444444443 3334444444444444444444444
Q ss_pred HHHHHHH
Q 006640 164 TFWKMKE 170 (637)
Q Consensus 164 ~~~~m~~ 170 (637)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.91 E-value=3.5e-05 Score=79.49 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006640 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL 200 (637)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (637)
|++++|...|+++++.. +.+..++..+..+|.+.|++++|+..+++..+..+. +..+|..+..+|...|++++|++.|
T Consensus 20 g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 20 KDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33333333333333332 223333444444444444444444444444433221 3333444444444444444444444
Q ss_pred HHHHh
Q 006640 201 DLMSR 205 (637)
Q Consensus 201 ~~m~~ 205 (637)
++..+
T Consensus 98 ~~al~ 102 (477)
T 1wao_1 98 ETVVK 102 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=72.07 Aligned_cols=90 Identities=10% Similarity=-0.030 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 256 (637)
..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456666666666666666666666666543 3456666666666666666666666666666542 224555555666
Q ss_pred HHHHcCCHHHHHH
Q 006640 257 AYAQNGEADQAEE 269 (637)
Q Consensus 257 ~~~~~g~~~~A~~ 269 (637)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-05 Score=75.72 Aligned_cols=93 Identities=15% Similarity=0.020 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEA- 502 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~- 502 (637)
.|..+..+|.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 677788888888888888888888887542 2566788888888888888888888887755 445533 33333333
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 006640 503 RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~ 520 (637)
....+..+++..++.+|.
T Consensus 309 ~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 122334444455554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=64.34 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=49.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM----------DRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.+++|++.+++..+.. +.+...|..+..++...|++ ++|+..|++.++..+. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3344556666666655543 44555555555555555443 4666666666664322 3446666666665
Q ss_pred hcC-----------ChhHHHHHHHHHHHCCCCCCHH
Q 006640 470 EAR-----------QPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 470 ~~g-----------~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
..| ++++|++.|++..+ +.|+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 543 55555555555555 445443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00086 Score=55.73 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAI 443 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 443 (637)
++++|+..|++..+.| .++.. |...|...+..++|.++|++..+.| +...+..|...|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555554 22222 4455555555555666665555542 45555555555555 55566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006640 444 EVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 488 (637)
..|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 44455555555555 555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=7e-05 Score=73.47 Aligned_cols=150 Identities=8% Similarity=-0.024 Sum_probs=76.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
....+..+...+.+.|++++|+..|++.+.. .|+... +...++..++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 4555677777888889999999999887763 343321 111222222222111 125667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA-WCNEKNI 229 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~ 229 (637)
+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence 777888888888888887776433 66777778888888888888888888776643 3344555555555 3345566
Q ss_pred HHHHHHHHHHHHC
Q 006640 230 TEAWNVMHKMAAS 242 (637)
Q Consensus 230 ~~A~~~~~~~~~~ 242 (637)
+++..+|.+|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.2e-05 Score=62.41 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...|..+...+...|++++|+..|++..+... .+...+..+..++...|++++|+..+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455555555555555556555555555322 1444555555555566666666666555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0015 Score=68.52 Aligned_cols=137 Identities=7% Similarity=0.021 Sum_probs=87.4
Q ss_pred HcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 84 ERGK-PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR----------FNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 84 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
+.|. .++|++.++.++... +-+..+|+.--.++...++ +++++..++.+++.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3443 356788888877643 2356667776666666555 677777777776665 55666676666666
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 153 SESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG-KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 153 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
.+.+ ++++++..++++.+.++. +..+|+.-.-.+.+.| .++++++.++++.+.. +.|..+|+.....+.+
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHh
Confidence 6666 557777777777766544 6666666666666666 6666777766666653 4566666666555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.1e-05 Score=59.81 Aligned_cols=93 Identities=10% Similarity=-0.033 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN-------LK 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 459 (637)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|+++.+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45667778888888899999999998888764 5678888888888999999999999999888753 44 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.+..+..++...|+.++|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 56666666666666666655443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0013 Score=54.70 Aligned_cols=84 Identities=12% Similarity=-0.029 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN-- 225 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-- 225 (637)
|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+.+ +...+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGK 107 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCC
Confidence 333333444444444444432 33344444444443 344444444444444332 33344444444444
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 006640 226 --EKNITEAWNVMHKMAAS 242 (637)
Q Consensus 226 --~g~~~~A~~~~~~~~~~ 242 (637)
.++.++|+.+|++..+.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHC
Confidence 34444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00038 Score=71.34 Aligned_cols=126 Identities=9% Similarity=-0.015 Sum_probs=90.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHH
Q 006640 397 GYVREQEPEKAEELLMTMIES---GFHP----NVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGV-SPNL-KTFE 462 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~ 462 (637)
.+..+|++++|+.++++..+. -+.+ -..+++.|...|...|++++|+.++++.++ .|. .|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888877652 1112 235788888899999999999999888764 232 2333 3688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH---CCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 463 TLMWGYSEARQPWRAEEILQIMKA---FGVHPQK----STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.|...|...|++++|..++++..+ .-+.|+. .....+..++...|.+++|+.++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988742 1122443 24556667788889999999999998655
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00022 Score=57.11 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 407 AEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
|+..|++..+.. +.+...|..+...|...|++++|+..|++..+... .+...+..+..++...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444432 33444444555555555555555555555444321 13334444444455555555555554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00036 Score=55.82 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 168 (637)
...+..+..++...|++++|...|++.++.. +.+...+..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444332 223333444444444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=71.43 Aligned_cols=125 Identities=15% Similarity=0.054 Sum_probs=91.1
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 006640 362 AWSTAGFMDKCKEIFDDMGKA---GIKP----DAHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVIFT 427 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 427 (637)
.+...|++++|+.++++.++. -+.+ ...+++.|...|...|++++|..++++..+. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355788999999888887642 1222 2567888999999999999999999887642 2 1222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCE-----HGVS-PNLK-TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|...|...|++++|+.+++++.+ .|.. |+.. +...+..++...|++++|..+|+++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988864 3422 2222 455666777788889999999988864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0011 Score=50.07 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555555555555554432 33444555555555555555555555555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00018 Score=60.38 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=71.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE----------PEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
.+.+.+++|++.++...+.. +.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34556677777777776654 3466777777777766655 458888888888874 55778888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 434 CSDG-----------SMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 434 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...| ++++|+..|+++++. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8764 899999999999984 5776666555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0016 Score=49.10 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=5.4
Q ss_pred HHHcCChhHHHHHHH
Q 006640 82 LIERGKPQEAQAIFN 96 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~ 96 (637)
+...|++++|+..|+
T Consensus 19 ~~~~~~~~~A~~~~~ 33 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQ 33 (91)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHH
Confidence 333333333333333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0009 Score=51.93 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666665543 34455566666666666666666666665553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0012 Score=51.10 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006640 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
...+..+...|...|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444444443322 3334444444444444444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.013 Score=56.55 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006640 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.|++... +.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 4556666666555555666666666666666643 5655565666666666666666666666655 45555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.024 Score=54.68 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444444444444444444444444432 3444444444444444444444444444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0065 Score=46.59 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...|++++|+..|+++.+... .+.. .+..+..++...|++++|...|++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666555555321 1334 555555555556666666666655554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.019 Score=57.80 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=56.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHH
Q 006640 396 KGYVREQEPEKAEELLMTMIESG---FHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HG-VSPNL-KTF 461 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~ 461 (637)
..+.+.|++++|+.++++..+.. +.|+ ..+++.++..|...|++++|+.+++++++ .| -.|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456677777777777776421 1121 24667777777777777777777776653 12 12222 257
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006640 462 ETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.|...|...|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777788777777777663
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0097 Score=59.85 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 006640 401 EQEPEKAEELLMTMIES---GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGV-SPNL-KTFETLMW 466 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~ 466 (637)
.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++++ .|. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665431 11111 23556666666666666666666666543 121 1222 24556666
Q ss_pred HHHhcCChhHHHHHHHHH
Q 006640 467 GYSEARQPWRAEEILQIM 484 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m 484 (637)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 666666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=58.33 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=66.8
Q ss_pred HcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 006640 365 TAGFMDKCKEIFDDMGK---AGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVIFTTII 430 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~li 430 (637)
..|++++|+.++++.++ .-+.|+ ..+++.|...|...|++++|+.++++..+. | ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788888888888664 222232 467888999999999999999999987642 2 1222 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006640 431 SGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..|...|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.029 Score=42.78 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
....+.+.|++++|...|+++.+.. +.+.. .|..+..+|...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445666777777777777776653 44556 67777777777777777777777777643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.28 Score=54.06 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 146 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..++..+.+.|..+.|.++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHH
Confidence 445555555566555554442110 0122334556666666654322 345566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
.++++.|.+.|.++.. |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|+++
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665532 22333444445555544444433333221 22333344445555555544
Q ss_pred H
Q 006640 306 A 306 (637)
Q Consensus 306 ~ 306 (637)
+
T Consensus 759 ~ 759 (814)
T 3mkq_A 759 L 759 (814)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.031 Score=46.28 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 006640 439 MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR---QPWRAEEILQIMKAFGVHP--QKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
...+.+-|.+..+.|. ++..+...+..++.+++ +.++|+.+|+...+.. .| ..+.+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555555443 46666666666666666 4446666666665422 23 2334445555566777777777
Q ss_pred HHHHHHhhcccc
Q 006640 514 RILSKIKNKERT 525 (637)
Q Consensus 514 ~~~~~~~~~~~~ 525 (637)
++++.+.+..|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 777777666664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.042 Score=55.25 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=71.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKA---GIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVI 425 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 425 (637)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|+..|...|++++|+.+++++.+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999988753 12222 567888999999999999999999987642 2 1222 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++.|...|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.32 Score=53.63 Aligned_cols=168 Identities=14% Similarity=0.046 Sum_probs=107.0
Q ss_pred HHHHHHcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 79 MNSLIERGKPQEAQA-IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
.......+++++|.+ ++..+ ++......++..+.+.|.++.|+.+.+ +.. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 344567899999876 44221 213334777888888999998887643 221 11345678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 99999986554 3778999999999999999999999998743 3445555555666665444443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.. ...|+++.|...|.+. .-+...+++|.+.+++++|..+-+.
T Consensus 732 ~a-------------------~~~~~~~~A~~~~~~~---------g~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 732 DA-------------------ETTGKFNLAFNAYWIA---------GDIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HH-------------------HHTTCHHHHHHHHHHH---------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-------------------HHcCchHHHHHHHHHc---------CCHHHHHHHHHHcCChHHHHHHHHH
Confidence 33 3344444444443322 1123344555566777777766544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.04 Score=41.68 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQE---PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+...+..+..++...++ .++|..++++..+.. +.++..+..+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444432222 344555555544442 33444444444445555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.034 Score=42.02 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+.|+..+..+..++...++ .++|..++++.++.... +......+...+...|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777777777765544 67888888888875432 556777777788888888888888888876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=1 Score=41.73 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc-CCH
Q 006640 229 ITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQN-----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE-GKI 299 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 299 (637)
...|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 444 45777888888874 88888888888887765433467777777877774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHH
Q 006640 300 KEALRFARTMKEYGVH--PNLVIFN 322 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~--~~~~~~~ 322 (637)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888876544 4443333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.065 Score=44.34 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHH
Q 006640 403 EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSP--NLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 477 (637)
....+.+-|.+..+.+ +++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4566777788777766 589999999999999988 6779999999999864 24 355677778889999999999
Q ss_pred HHHHHHHHHCCCCCCH
Q 006640 478 EEILQIMKAFGVHPQK 493 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~~ 493 (637)
+++++.+.+ ++|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 999999988 77864
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.74 Score=39.04 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=53.3
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (637)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..|.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3345666666666665554 2455666666666666666666666654321 333444455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.-.++-+.....| -++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433333332 134444444455666666555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.22 E-value=1.2 Score=37.69 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=51.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006640 118 TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197 (637)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (637)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455666666554433 2455566666666666666666666655532 333444444555555544
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
++-+.....| -++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444333332 134444445555666666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.23 Score=38.30 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESG------FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.-+..|...+.+.|+++.|...|+...+.. -.+....+..+..++.+.|+++.|+.+++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555544320 012334455555555555555555555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.23 Score=38.22 Aligned_cols=70 Identities=4% Similarity=-0.030 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006640 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG------VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+..-...|+..+...|+++.|...|+++.+.- -.+....+..|..++.+.|++++|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34445566777777777777777777766421 112345666667777777777777777776665 44554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=1.1 Score=35.71 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006640 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 374 (637)
-.|.+++..++..+..+. .+..-+|-++--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356677777777776653 34444555554444444444444444443221 111 22344444333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 454 (637)
.+-.+ ..+.......++.....|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33222 124445555666777778888877777775443 267777777788888888888888888888877775
Q ss_pred C
Q 006640 455 S 455 (637)
Q Consensus 455 ~ 455 (637)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.32 Score=44.99 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 006640 369 MDKCKEIFDDMGKAGIKPD---AHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD-GSM 439 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 439 (637)
...|...+++.++. .|+ ...|..|...|.+ -|+.++|.+.|++.++.+...+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666667776664 344 4577788888877 488888888888888764212467777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHH
Q 006640 440 DRAIEVFDKMCEHGVS--PNLK 459 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~--p~~~ 459 (637)
++|.+.+++.+...+. |+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHcCCCCCCCChh
Confidence 8888888888876655 5543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.30 E-value=7.6 Score=42.49 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006640 79 MNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~ 99 (637)
++.+.+.++.+.+.++|..+.
T Consensus 237 ~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 237 NKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.21 Score=39.61 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR---AEEILQIMKAFGVHP--QKSTFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~eA~~ 514 (637)
..+.+-|.+....|. |+..+-..+..++.++....+ ++.+++...+.+ .| ..+..-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444444433332 455555555555655554444 555555554321 12 12223344445566666666666
Q ss_pred HHHHHhhcccc
Q 006640 515 ILSKIKNKERT 525 (637)
Q Consensus 515 ~~~~~~~~~~~ 525 (637)
+++.+....|+
T Consensus 96 ~~~~lL~~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCC
Confidence 66666655554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.36 Score=38.34 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=73.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 006640 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR---AIEVFDKMCEHGVSP--NLKTFETLMWGY 468 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~ 468 (637)
+++.......+..+.+-|.+....| .++..+--.+.+++.+..+... ++.++++..+.+ .| +....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 4444455556677777777776655 5888888889999999887666 999999988764 23 344556677789
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.+.|++++|+++++.+.+ +.|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCC
Confidence 999999999999999988 77864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.63 Score=37.97 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
+++++|.++|+.+++.+ +.-..+|......-.++|++..|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 56666666666665432 2225555555555566666666666666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.61 Score=38.05 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=60.9
Q ss_pred CcchhHHHHHHHHHHHcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChhHHHHHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKP------QEAQAIFNNLIEGGHKPSLV----TYTTLLA---ALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~ 135 (637)
+.|..+|-..+..+-+.|++ ++.+++|++.... ++|+.. .|-.+.- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677787777777777888 7888888887763 455421 1111110 11223566666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLT 174 (637)
Q Consensus 136 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 174 (637)
.. +.=..+|......-.+.|++..|.+++......++.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42 222555555555556666666666666666665544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.31 E-value=3.6 Score=32.87 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=67.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006640 120 QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKL 199 (637)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 199 (637)
.|..++..++..+..+. .+..-+|-+|--....-+-+...++++.+-+. -|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45555666666555542 24444444444444444444444444444321 111 123333333333
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 200 LDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 200 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
+-.+- .+.......+......|.-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 84 ~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33221 2334445555555566666666666665433 2245555566666666666666666666666666555
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.75 E-value=2.1e-05 Score=77.03 Aligned_cols=269 Identities=12% Similarity=0.153 Sum_probs=171.0
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+..+..|..|..++...|+..+|++.|-+. .|+..|..++.++.+.|.+++-...+....+. ..++.+=+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 45667788999999999999999998766332 26667889999999999999988887765554 44556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.|+-+|++.+++.+-.+++ . .|+..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.
T Consensus 121 eLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L 183 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHL 183 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSC
T ss_pred HHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHH
Confidence 8899999999866533322 1 35666677888888889999988888876543 33444555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++..|.+.-++ ..++.||-.+-.+|...+.+.-|.-.--.++-. ..-...++..|-..|.+++-+.++
T Consensus 184 ~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 184 GEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666543222 235667777777777777777665544443321 122233556667777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHHcCChHHHH
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE-FRVNP------DVITYSTIMNAWSTAGFMDKCK 373 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~a~ 373 (637)
+.-.... +.....|+-|.-.|++ -+++...+.++..-. .+++. ....|.-++-.|.+-.+++.|.
T Consensus 253 EaglglE-rAHmGmFTELaILYsK-Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 253 EAALGLE-RAHMGMFTELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHS-SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCC-chhHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7665322 4455666666666655 344555444443221 12211 1223555555566656655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=3.5 Score=40.50 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTFLLLA 500 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l~ 500 (637)
...++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|++.|+... +.|+.|..++-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456677778888888888888887653 2367788888888888888888888887763 468888877654444
Q ss_pred HHH
Q 006640 501 EAR 503 (637)
Q Consensus 501 ~~~ 503 (637)
.++
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.23 E-value=0.017 Score=57.10 Aligned_cols=219 Identities=10% Similarity=0.083 Sum_probs=136.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
..|+..|..++....+.|.+++-+..+.-..+.. .++..=+.|+-+|++.++..+..+.+. .||..-...+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 3456667778999999999999988877665542 234444688999999998766544332 4666666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESG--------------------LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+-|...|.++.|.-+|..+.... -.-++.||--+-.+|...+++.-|.-.--.+.-.
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-- 228 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-- 228 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--
Confidence 777888888887777775543210 0125567777777787777776665443333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCC------C
Q 006640 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH-NGVQ------P 281 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~ 281 (637)
+| -...++..|-..|.+++-+.+++.-+... +.-...|+-|.-.|++- ++++..+.++..-. -+++ .
T Consensus 229 --ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 --AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp --SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred --HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11 12335566677788888788877766321 34566777777777664 34444443322111 1111 1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHH
Q 006640 282 NGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
....|.-++-.|.+..+++.|..
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHHH
Confidence 34557777777777777776653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.15 E-value=1.1 Score=47.88 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=70.3
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC-hhHHHHHHHHHHHc------CCC-CCHH--
Q 006640 77 KLMNSLIERGK-PQEAQAIFNNLIEGGHKPSLVTY--TTLLAALTIQKR-FNSIHSIMSQVEEN------GMD-PDSI-- 143 (637)
Q Consensus 77 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~-~~~~-- 143 (637)
.|+..+...|+ .+.|+.+|+++... .|...++ ..++..+...++ --+|..++.+.++. ..+ .+..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 47799999998875 3333322 223333222221 12344444333321 111 1211
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006640 144 --------FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 144 --------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
....=...+...|+++-|+.+-++....-+. +-.+|..|..+|...|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234556678888888888887776432 56788888888888888888888887764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.12 E-value=3.7 Score=32.74 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 453 GVSPNLKTFETLMWGYSEARQP---WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
+-.|+..+--.+..++.++... .+++.+++.+.+.+..-..+.+-.+.-++.+.|++++|.++.+.+....|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4457777777788888887755 357888887765332112445556667788899999999999888877765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=1.9 Score=42.41 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLKT 460 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 460 (637)
.+...++..+...|++++|...+..+.... +-+...|..++.++...|+..+|++.|+...+ .|+.|...+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445567778889999999999999988764 77888999999999999999999999988753 588888765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.22 E-value=7.7 Score=31.35 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 454 VSPNLKTFETLMWGYSEARQPW---RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
..|+..+--.+.+++.++...+ +++.+++.+.+.+..-..+..-.+.-++.+.|++++|.++.+.+.+..|.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3578888777888888877554 67888888766332213344445666788999999999999888877664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.89 E-value=6 Score=42.36 Aligned_cols=49 Identities=10% Similarity=-0.158 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006640 457 NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATG 507 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 507 (637)
+..-|..|+....+.+.++||.+.|+.... .+-+...+..|+..|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 344466666666666666666666666554 2345555666666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.15 E-value=39 Score=37.07 Aligned_cols=252 Identities=12% Similarity=0.101 Sum_probs=122.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 006640 258 YAQNGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV-------HPNLVIFNLLIKGF 328 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 328 (637)
....|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 344566666666665543311 011122333344445556665667777766554321 01112222232233
Q ss_pred HHcCC-HhHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHc
Q 006640 329 VEIMD-RDGVDEVLALMKEFRVNPDVIT--YS--TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK--GYVRE 401 (637)
Q Consensus 329 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 401 (637)
+-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++. ++.-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 32332 235555555555432 2221 11 22333445677777777777766532 3333333333 34467
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006640 402 QEPEKAEELLMTMIESGFHPNVVI-FT---TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
|+.+.+..+++.+... .++.. |. ++.-+|+..|+.....+++..+.+.. ..+......+.-++...|..+.+
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 8888888888877763 23322 22 33445667778766666887777631 12222333333344556666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 006640 478 EEILQIMKAFGVHPQKSTFLLLAEARRATGL-TKEAKRILSKIK 520 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~eA~~~~~~~~ 520 (637)
.++++.+.+.+ .|....-..+.-....+|. ..+|...+..+.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66665554432 2332222222222233333 256666776664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.29 E-value=8.2 Score=30.75 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006640 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.|+..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|+++.+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4555555556666665543 345666777666544211234455556667777777777777777665 55654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.13 E-value=29 Score=34.62 Aligned_cols=165 Identities=4% Similarity=0.005 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--H
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKPD---AHAYSILAKGYVREQEPEKAEELLMTMIE----SGFHPN--V 423 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~ 423 (637)
....|...|...|++.+|..++..+... +.... ...+...++.|...+++..|..+++++.. ...+|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888899999999999887642 21111 35666778888999999999999888642 221222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPNLKTF----ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (637)
..+..++..+...+++.+|-+.|.++.+. ...-|...+ ..++....-++...+--.+.........-++.+.|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 35677777888899999999888887642 111233222 2222222223333333333333322222346678888
Q ss_pred HHHHHHHc--CCHHHHHHHHHHH
Q 006640 499 LAEARRAT--GLTKEAKRILSKI 519 (637)
Q Consensus 499 l~~~~~~~--g~~~eA~~~~~~~ 519 (637)
++.+|... .+++...+.++..
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHhchHhhhHHHHHHHHHH
Confidence 88888654 3456655555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.41 E-value=4.7 Score=30.20 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+.-+..+-++.+..+.+.|+.......+.+|.|.+++.-|.++++.++.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445666667777778888999999999999999999999999999887663
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.89 E-value=16 Score=41.67 Aligned_cols=148 Identities=12% Similarity=0.032 Sum_probs=99.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C---------------
Q 006640 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----G--------------- 418 (637)
Q Consensus 358 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--------------- 418 (637)
.++..+...+..+.+.++.... +.+....-.++.+|..+|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4556667777777776655432 234455556777888999999999999764210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006640 419 ---FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--K--TFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491 (637)
Q Consensus 419 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 491 (637)
...-...|..++..+.+.|.++.++++-+.+++....-+. . .|..+.+++...|++++|...+-.+.... -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 0112245677888888899999999888877754222122 2 57788889999999999999888776533 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 006640 492 QKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA 512 (637)
.......++..++..|..++=
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 356677777777777776553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.73 E-value=4.9 Score=33.46 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSL-------VTYTTLLAALTIQKRFNSIHSIMSQV 133 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 133 (637)
-.-+..+...|.++.|+-+.+.+... +..|++ .++..+..++...+++..|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33355555666666666555554321 112221 13333445555555555555555554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.05 E-value=15 Score=29.61 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006640 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.|+..+--.+.+++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|+++.+.+.+ ++|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555555555556655543 345666666666543221233444455567777777777777777666 55653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.79 E-value=10 Score=31.62 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=66.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH
Q 006640 395 AKGYVREQEPEKAEELLMTMIESG-FHPNV-------VIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFETL 464 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l 464 (637)
+..+...|.++.|+-+...+.... .+|+. .++..+..++...|++..|...|++.+.. .+.-+..+..++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 556677888888887777654321 13331 25566777788888888888888887532 111111111111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
.. ..... ......++.+.-..+..++...|++++|+..++.++.+.
T Consensus 107 ~~---~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 107 GN---SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cc---cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 00 00000 011133345555568889999999999999999987663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.15 E-value=39 Score=33.66 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-- 458 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-- 458 (637)
....|...|...|++.+|.+++..+...-. ..+ ...+...+..|...+++..|..+++++.. ....|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 446788899999999999999999874311 112 34666778889999999999999998742 2222332
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 459 KTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
..+...+..+.+.+++.+|...|.++.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 246677788889999999988887764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.72 E-value=7.1 Score=29.26 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
.-++.+.+..+......|++.+..+.+.+|.+.+++..|..+|+-+..+- .+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33455555555566666777777777777777777777777776665431 22233454444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.11 E-value=32 Score=39.24 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=93.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 006640 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES-------------------- 171 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------- 171 (637)
.++..+...+.++.+.++.... +.+...--.+..+|..+|++++|...|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555566666555543321 334444344455666667777776666543210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 172 G--LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK-PN--LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 172 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 246 (637)
. ...-..-|..++..+-+.+.++.++++-....+..... ++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0 00112346778888889999999888877666543111 11 12578889999999999999999988876643
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~ 268 (637)
-......|+...+..|..+.-.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhh
Confidence 3556677777777777765544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.67 E-value=41 Score=32.80 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCC-HhHHHHHHHHHHhCCC-CCCHH---
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEY-GVHP---NLVIFNLLIKGFVEIMD-RDGVDEVLALMKEFRV-NPDVI--- 354 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~-~~~~~--- 354 (637)
.....|...|.+.|+.++..+++...... +..+ .......+++.+....+ .+.-.++.....+... ..-.+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888777766421 0011 12234455555544322 2222222222221000 00011
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 355 -TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 355 -~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
+-..++..|...|++.+|.+++..+.+.--..| ..++..-+.+|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112455556666666666666655544211111 2333444455556666666666665543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.67 E-value=31 Score=31.38 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=77.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006640 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK----TFETLMWGYSEAR 472 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 472 (637)
...+.|++++|+.....-++.. |-|...-..++..+|-.|+++.|..-++...+.. |+.. +|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH-----
Confidence 4567899999999888888775 7788888899999999999999999998888743 4433 34444432
Q ss_pred ChhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhhccc
Q 006640 473 QPWRAEEILQIMKAFGVH-----PQKSTFLLLAEARR--ATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~-----p~~~~~~~l~~~~~--~~g~~~eA~~~~~~~~~~~~ 524 (637)
...-.....-+-. ........++.++. ..|+.++|.++-.++.+..|
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 1111222221111 23445556666544 56999999999888865543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 637 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.11 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.92 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.69 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.68 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.12 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.57 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.07 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.74 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.64 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.35 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.39 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.2e-22 Score=197.26 Aligned_cols=383 Identities=11% Similarity=0.034 Sum_probs=222.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
+...+.+.|++++|++.|+++++.. +-++.++..+..++...|++++|...++++++.. |.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4555666666666666666666532 2245566666666666666666666666665553 4445555666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|...+....+.... +...+..........+....+........... .................+.
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------- 150 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGR--------- 150 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSC---------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccc--cccccccccccccccccch---------
Confidence 66666666555554322 33333333333334444444444333333322 2233333333333444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
...+...+....... +.+...+..+...+...|++++|...+.+..+.. +.+
T Consensus 151 --------------------------~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~ 202 (388)
T d1w3ba_ 151 --------------------------LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp --------------------------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred --------------------------hhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-ccc
Confidence 444444444433322 1233444445555555555555555555554432 334
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
...+..+...+...|++++|...+....... +.+...+..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4555555666666666666666666655543 2345556666666777777777777777766653 3356677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
|...|++++|.+.++...... +.+...+..+...+...|++++|+..|++..+..+. +..++..+..+|...|++++|
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 566677777777777777777777777777764321 455677777777777888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 006640 478 EEILQIMKAFGVHPQ-KSTFLLLAEARRATGL 508 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 508 (637)
...|++..+ +.|+ ...|..++.+|.+.|+
T Consensus 359 ~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 359 LMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 877777766 4565 4467777777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-21 Score=195.95 Aligned_cols=359 Identities=11% Similarity=-0.004 Sum_probs=252.1
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
.+.++..+..+...|.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...+....+.. +.+......
T Consensus 29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 106 (388)
T d1w3ba_ 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccc
Confidence 34567889999999999999999999999998853 3478899999999999999999999999999876 566666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
........+....+............. ...............+....+...+....... +.+...+..+...+...|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 183 (388)
T d1w3ba_ 107 LAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC--cchhHHHHhhcccccccC
Confidence 666677777776766666666554433 55666667777788889999999988887764 556788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 228 NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
++++|...+++..+.. +-+...+..+...+...|++++|...+.+...... .+...+..+...+.+.|++++|+..|+
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 261 (388)
T d1w3ba_ 184 EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999887753 33567788888888888888888888888776543 355667777777888888888888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+..+.. +.+..++..+...+...|++++|...++...... +.+...+..+...+...|++++|+..|++.++.. +.+
T Consensus 262 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~ 338 (388)
T d1w3ba_ 262 RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEF 338 (388)
T ss_dssp HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 776653 3445566666666666666666666666555443 2344555555555555555555555555555432 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
..++..+...|.+.|++++|...|++..+.. |.+..+|..++.+|.+.|
T Consensus 339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 4445555555555555555555555555432 233445555555554444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.5e-13 Score=129.78 Aligned_cols=231 Identities=10% Similarity=-0.008 Sum_probs=173.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006640 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 156 (637)
.....+.+.|++++|+..|+++++.. +-++.+|..+..++...|+++.|...+.++++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45677889999999999999999863 3478899999999999999999999999999876 667889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 157 NMEEAMDTFWKMKESGLTPT--------------TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
++++|.+.+++.....+... .......+..+...+...+|.+.|.+.........+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999999887542200 0001112223344556677777777776654334456777777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEA 302 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 302 (637)
+...|++++|+..|++..... +-+...|..+..++...|++++|.+.|++..+... .+..++..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888877653 23566777778888888888888888887776532 3456677778888888888888
Q ss_pred HHHHHHHHH
Q 006640 303 LRFARTMKE 311 (637)
Q Consensus 303 ~~~~~~~~~ 311 (637)
+..|++.++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.4e-13 Score=129.20 Aligned_cols=244 Identities=11% Similarity=0.057 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 006640 217 NVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE 296 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 296 (637)
......+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...|.+..+..+ .+...+..+...|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 345667788888888888888888764 33577888888888888888888888888876543 3567777888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006640 297 GKIKEALRFARTMKEYGVHPNLVIF-NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375 (637)
Q Consensus 297 g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 375 (637)
|++++|.+.++++.... |+.... ........ ..+.......+..+...+.+.++...
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 88888888888887653 221100 00000000 00001111112223445566778888
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 376 FDDMGKAGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 376 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 454 (637)
+....+... ..+..++..+...+...|++++|+..|++..... +.+..+|..+...|...|++++|++.|+++.+...
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 877765432 2456778888888999999999999999988764 56788899999999999999999999999887542
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
-+...+..++.+|...|++++|+..|++..+
T Consensus 238 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 -GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2566888899999999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2e-09 Score=102.58 Aligned_cols=218 Identities=6% Similarity=-0.003 Sum_probs=175.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
-...++.+...+.+.+.+++|+.+++++++.. +-+..+|+....++...| ++++|+..++++++.. +-+..+|..+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 35567777788889999999999999999853 347788999998888876 5899999999999886 77899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN- 228 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~- 228 (637)
..+.+.|++++|+..++++.+..+. +..+|..+...+...|++++|++.|+++.+.. |.+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHcccc
Confidence 9999999999999999999998655 78999999999999999999999999999975 5678899988887776665
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHH
Q 006640 229 -----ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-NGRTCGIIISGYCK 295 (637)
Q Consensus 229 -----~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 295 (637)
+++|+..+.+.++.. +.+...|+.+...+.. ...+++.+.++...+....+ +...+..++..|..
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678999998888764 3467778777666544 44677888887776643322 34455556666644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2e-08 Score=97.29 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHH
Q 006640 323 LLIKGFVEIMDRDGVDEVLALMKEFR----VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKP----DAHAYS 392 (637)
Q Consensus 323 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~ 392 (637)
.+...+...|+++.+...+....... .......+......+...+....+...+...... .... ....+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 33444445555555555444443221 1112233344444555556666665555544321 0111 122344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHH
Q 006640 393 ILAKGYVREQEPEKAEELLMTMIESGFH---PNVVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-KTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l 464 (637)
.+...+...|++++|...+.+..+.... .....+..+...+...|++++|...++++.. .+..|+. .++..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 4555666777777777777665543211 1233455566677777777777777776652 2333332 356666
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 006640 465 MWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~ 485 (637)
..+|...|++++|.+.+++..
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7.3e-09 Score=98.62 Aligned_cols=197 Identities=8% Similarity=0.019 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
..+++.+...+.+.+.+++|+.+++++++.. |-+...|+....++...| ++++|+..+++..+..+. +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 5567777777888888889999999888876 667788888888887766 488888888888877654 6788888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE-- 263 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-- 263 (637)
.+.+.|++++|++.++++.+.. |.+...|..+...+...|++++|+..++++++.+ +.+...|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 8888888888888888888764 5678888888888888888888888888887764 3356667766665555444
Q ss_pred ----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 264 ----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 264 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+++|+..+.+.++..+ .+...|+.+...+.. ...+++.+.++...
T Consensus 198 ~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 3445555555444322 234444444333322 22344444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.4e-08 Score=98.39 Aligned_cols=268 Identities=10% Similarity=0.012 Sum_probs=173.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHNGVQPN----GRTCGIIISGYCKEGKIKEALRFARTMKEYGV-HP----NLVIFNLLI 325 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll 325 (637)
...+...|++++|++++++..+.....+ ...+..+..+|...|++++|+..|++..+... .+ ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3344555566666666555554321111 12344455566666666666666665543210 01 122344455
Q ss_pred HHHHHcCCHhHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 006640 326 KGFVEIMDRDGVDEVLALMKE----FRVNP---DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG----IKPDAHAYSIL 394 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l 394 (637)
..+...|++..+...+..... ..... ....+..+...+...|+++.+...+....... .......+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 566666777777666655432 11111 12345567788899999999999999877532 22234566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 006640 395 AKGYVREQEPEKAEELLMTMIES--GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP---NLKTFETLM 465 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~ 465 (637)
...+...+....+...+.+.... ..... ...+..+...+...|+.++|...+++..+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 77888999999999988876542 11111 2345666777889999999999999887643222 234566788
Q ss_pred HHHHhcCChhHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 466 WGYSEARQPWRAEEILQIMK----AFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.++...|++++|...+++.. ..+..|+. ..+..+..++.+.|++++|.+.+++....
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999875 34555543 46788899999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.3e-08 Score=96.77 Aligned_cols=184 Identities=10% Similarity=-0.027 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006640 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM 344 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (637)
++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++++........+|...+..+.+.++.+.|..+|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444555444332223333444444444455555555555555444321112233444444444444444444444444
Q ss_pred HhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-
Q 006640 345 KEFRVNPDVITYSTIMN-AWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG-FHP- 421 (637)
Q Consensus 345 ~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~- 421 (637)
.+..+. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|+.+|++..+.. .+|
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 443321 1122221111 1122344444444444444331 2234444444444444444444444444444321 111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 422 -NVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 422 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
....|...+.--..+|+.+.+..+++++.
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234444444444444444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=2.3e-08 Score=95.04 Aligned_cols=189 Identities=8% Similarity=0.033 Sum_probs=149.8
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
.+++..+++...+...+.+...|...+..+...|+++.|..+|+.+++........+|..++..+.+.|+.+.|.++|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 46788888888775555677788888888899999999999999998764333456788999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC
Q 006640 414 MIESGFHPNVVIFTTIISG-WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG-VHP 491 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p 491 (637)
+.+.. +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+.++|+.+|++..+.. ..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 98874 4455555554443 445689999999999998763 2367789999999999999999999999987633 444
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 492 Q--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 492 ~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+ ...|...+..-...|+.+.+..+.+++.+..+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3 45788888887888999999999998877655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=1e-09 Score=106.02 Aligned_cols=248 Identities=6% Similarity=-0.063 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006640 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRAW----------CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
.++|++++++..+.. |.+...|+..-..+ ...|++++|+.+++...+.. +.+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 356666666655543 23333443322222 22333555666666655542 224445555554444443
Q ss_pred --CHHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006640 263 --EADQAEEVIVEMEHNGVQPNGRTCG-IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDE 339 (637)
Q Consensus 263 --~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (637)
++++|...+.++..... ++...+. .....+...+.+++|+..++.+++.. +.+...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 35566666666555432 2333332 23344455566666666666665554 3455566666666666666655543
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 340 VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF 419 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 419 (637)
.+....+.. |. ...+...+...+..+++...+....... +++...+..++..+...++.++|...+.+..+..
T Consensus 200 ~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 200 QGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp CCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 333222210 00 1112222334455555555555555443 2334444455555555666666666666665442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
+.+..+|..++.++...|+.++|++.|+++.+.
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 233455556666666666666666666666663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=4.6e-09 Score=97.20 Aligned_cols=217 Identities=11% Similarity=-0.040 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 88 PQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 164 (637)
.+.|+.-+++++...... ...+|..+..+|.+.|++++|...|++.++.. |.++.+|..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 445555566666532111 23466677788888888888888888888775 66778888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM 244 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 244 (637)
|+++.+..+. +..++..+..+|...|++++|...|+...+.. +.+......+...+.+.+..+.+..+........
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 8888876544 56678888888888888888888888887764 4455555555555555665555555555554432
Q ss_pred CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 245 KPDVVTYNTIATAYAQNGE----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++...++ ++..+..... .+.+...+....... +....++..+...|...|++++|+..|++.+..
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1222222 2222211111 111111111111100 011234555667777777777777777777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.6e-09 Score=104.60 Aligned_cols=251 Identities=7% Similarity=-0.016 Sum_probs=153.5
Q ss_pred cCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH----------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 85 RGKPQEAQAIFNNLIEGGHKP-SLVTYTTLLAALT----------IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
....++|+.+++++++. .| +...|+..-..+. ..|++++|+..++.+++.. +.+...|..+..++.
T Consensus 42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 33458999999998874 34 4555654433322 2234667777777777665 556677777766666
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 154 ESG--NMEEAMDTFWKMKESGLTPTTSTYN-TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 154 ~~g--~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
..+ ++++|...+.++.+..+. +...+. .....+...+..++|+..++.+.... |.+...|+.+...+.+.|+++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHH
Confidence 654 467777788777775433 444444 33456666777788888877777664 456777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+|...+....+. .|+ ...+...+...+..+++...+........ ++...+..++..+...++.++|...+.+..
T Consensus 196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 665554443322 111 11233334555666666666666655432 344555556666666677777777776665
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 311 EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
... +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 270 ~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 270 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp TTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 432 2234455666666666666777777766666643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=8.1e-09 Score=95.44 Aligned_cols=199 Identities=12% Similarity=-0.018 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
....|..+...|.+.|++++|+..|++.+... +-++.+|+.+..++...|++++|+..|+++++.. +.+..++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 45677888999999999999999999999853 3478899999999999999999999999999976 667888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN-- 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-- 228 (637)
+|...|++++|...|++..+..+. +......+...+.+.+..+.+..+........ ++...++ ++..+.....
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD---KEQWGWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC---CCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc---hhhhhhh-HHHHHHHHHHHH
Confidence 999999999999999999887543 55555555556666666666666666665543 2222222 2222222222
Q ss_pred --HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 229 --ITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 229 --~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
.+.+...+...... .| ...+|..+...|...|++++|...|++.+...
T Consensus 189 ~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 189 TLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222221111 11 23467778999999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=3.4e-07 Score=79.58 Aligned_cols=124 Identities=11% Similarity=-0.063 Sum_probs=75.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+...|+++.|++.|.++. +|+..+|..++.+|...|++++|++.|++.++.+.. +...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 34455666666666665431 455556666666666666666666666666654322 4445666666666666666
Q ss_pred HHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 476 RAEEILQIMKAFG------------V--HPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 476 ~A~~~~~~m~~~g------------~--~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+|+..|++..... . .+. .+.+..+..++...|++++|.+.++++....+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6666666554311 0 111 24566777888889999999998888876654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-06 Score=76.20 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=100.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
...+...|+++.|++.|..+ .+|+..+|..+...|.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 44567788999999888764 25677888889999999999999999999988875 67788899999999999999
Q ss_pred HHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006640 440 DRAIEVFDKMCEHGV--------------SPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
++|+..|++...... .++ ..++..+..++...|++++|.+.++...+....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999998875311 111 356677888899999999999999988774433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=0.00019 Score=65.32 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=147.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
|+..+..|...+.+.|++++|++.|++..+.| +..++..|...|.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35567778888888999999999999988754 66677677777765 557888888888877755 444455
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006640 147 AVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 147 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhh
Confidence 55554443 3567888888888877653 3333334333332 33456666666666553 46677777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006640 219 LVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 219 li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
|...+.. ..+...+...++...+.| +......+...|.. ..+++.|..+|.+..+.| ++..+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 7777765 456667777777776654 55555556656655 456777777777776654 345556666
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcC
Q 006640 291 SGYCK----EGKIKEALRFARTMKEYG 313 (637)
Q Consensus 291 ~~~~~----~g~~~~A~~~~~~~~~~~ 313 (637)
.+|.+ ..+.++|.+.|++..+.|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 66654 235667777777776655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.8e-06 Score=67.89 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
...+.+.|++++|+.+|++.++.. |.+...|..+..+|...|++++|+..++++++.++ .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence 455666666666766666666653 55666666666666666777777777766666543 2555666666666666777
Q ss_pred hHHHHHHHHHHHCCCCCCHH
Q 006640 475 WRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~ 494 (637)
++|+..|++..+ ..|+..
T Consensus 88 ~~A~~~~~~a~~--~~p~~~ 105 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANNP 105 (117)
T ss_dssp HHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHHHHHHHH--hCCCCH
Confidence 777666666665 444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.51 E-value=0.00031 Score=63.83 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 006640 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEH 276 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 276 (637)
.+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+.....
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 34444444444555555555555544433 33333334444433 3344444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.9e-06 Score=64.83 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 169 (637)
|..+..++...|++++|+..+.++++.+ +.+...|..+..++...|++++|+..|++..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 98 (117)
T d1elwa_ 40 YSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333333333333333333333332 2333333333333333333333333333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=7.9e-06 Score=76.12 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 216 YNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+..+...+...|++++|+..|+++..
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 44444555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.7e-06 Score=70.36 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
......|.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|+++++.... +...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 344667889999999999999988875 678888999999999999999999999999886532 567888899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCH
Q 006640 472 RQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
|++++|...+++..+ +.|+.
T Consensus 92 g~~~eA~~~~~~a~~--~~p~~ 111 (159)
T d1a17a_ 92 GKFRAALRDYETVVK--VKPHD 111 (159)
T ss_dssp TCHHHHHHHHHHHHH--HSTTC
T ss_pred CCHHHHHHHHHHHHH--cCCCC
Confidence 999999999998877 44553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.4e-06 Score=69.89 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=42.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006640 116 ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (637)
.+.+.|++++|...|.++++.. +.+...|..+...|...|++++|...|++..+..+. +..+|..+..+|...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444443 334444444444455555555555555544444322 33444444445555555555
Q ss_pred HHHHHHHHHhc
Q 006640 196 SVKLLDLMSRE 206 (637)
Q Consensus 196 A~~~~~~m~~~ 206 (637)
|...|++....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 55555444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=1.1e-05 Score=75.16 Aligned_cols=162 Identities=9% Similarity=-0.054 Sum_probs=69.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-----CCHHHHHHH
Q 006640 290 ISGYCKEGKIKEALRFARTMKEY----GVHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-----PDVITYSTI 359 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 359 (637)
...|...|++++|...|.++.+. +-++ -..+|..+...|.+.|++++|.+.++...+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566666666666666665432 1011 1234445555555555555555555443221000 001223333
Q ss_pred HHHHHH-cCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHH
Q 006640 360 MNAWST-AGFMDKCKEIFDDMGKA----GIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN------VVIFT 427 (637)
Q Consensus 360 i~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~ 427 (637)
...|.. .|++++|+..+.+..+. +.++ ...++..++..|.+.|++++|.+.|+++........ ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 333322 35555555555544321 1000 122344455555555555555555555544321110 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..+..+...|+++.|...++++.+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344445555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=2.8e-06 Score=74.33 Aligned_cols=98 Identities=14% Similarity=-0.027 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
|+...+...+..|.+.|++++|+..|.++++.. |.+...|..+..+|.+.|++++|+..|+++++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 344444555555566666666666666555543 445555666666666666666666666665553211 344555566
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 006640 466 WGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~ 485 (637)
.+|...|++++|+..|+++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.3e-06 Score=67.62 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 006640 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNL-KTFETLMWGY 468 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 468 (637)
.+++.+...+++++|.+.|++....+ +.++.++..+..++.+.+ ++++|+.+|+++...+..|+. .++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555666666666666666666654 556666666666665533 334566666666654333332 2455666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
...|++++|++.|+++.+ +.|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 666666666666666665 455543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=9.2e-06 Score=70.85 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=35.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
....|.+.|++++|+..|.+..+..+. +...|..+..+|.+.|++++|+..|++..+.. |.+..+|..+..+|...|
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHHHHHHHHCC
Confidence 333344444444444444443333222 33334444444444444444444444443321 223334444444444444
Q ss_pred CHHHHHHHHHHH
Q 006640 228 NITEAWNVMHKM 239 (637)
Q Consensus 228 ~~~~A~~~~~~~ 239 (637)
++++|+..|+++
T Consensus 87 ~~~~A~~~~~~a 98 (201)
T d2c2la1 87 SYDEAIANLQRA 98 (201)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=8.4e-06 Score=63.34 Aligned_cols=84 Identities=7% Similarity=-0.006 Sum_probs=35.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006640 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
.+.+.|++++|...|++.++.. |.+..+|..+..++.+.|++++|+..|++..+..+. +...+..+...|...|+.++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 223444444444444444444444444444443211 23344444444444444444
Q ss_pred HHHHHH
Q 006640 477 AEEILQ 482 (637)
Q Consensus 477 A~~~~~ 482 (637)
|++.++
T Consensus 103 A~~~l~ 108 (112)
T d1hxia_ 103 ALASLR 108 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=1.1e-05 Score=62.52 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.|++++|...|++..+..+. +..+|..+..++.+.|++++|+..|++..+.. |.+...|..+...|...|++++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCCHHH
Confidence 33444444444444444443322 34444444444444444444444444444432 2334444444444444444444
Q ss_pred HHHHHHH
Q 006640 232 AWNVMHK 238 (637)
Q Consensus 232 A~~~~~~ 238 (637)
|++.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=0.0035 Score=58.07 Aligned_cols=271 Identities=11% Similarity=0.117 Sum_probs=146.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006640 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 156 (637)
.+...+.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+...+....
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 356667788899999888887642 677778888888888887776543 35678888888888777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
....|. +.......++.....++..|-..|.+++...+++...... +.+...++.++..|++.+. ++-.+.+
T Consensus 84 e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~~~-~kl~e~l 155 (336)
T d1b89a_ 84 EFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKP-QKMREHL 155 (336)
T ss_dssp CHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHhCh-HHHHHHH
Confidence 665432 2222333466666788888888899999888888776542 4677788888888887653 3333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM----------EHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
.... -..|. ..+++.|.+.+-+.++.-++..+ ... .++..-....+..+.+..+.
T Consensus 156 ~~~s---~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~------- 220 (336)
T d1b89a_ 156 ELFW---SRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANV------- 220 (336)
T ss_dssp HHHS---TTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSST-------
T ss_pred Hhcc---ccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCCh-------
Confidence 2221 11121 12334444444444433333322 111 12222222233333333333
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
..|...+..|... +++-...++..+... .|+ ..++....+.+++......++.....+
T Consensus 221 ------------e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 221 ------------ELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp ------------HHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred ------------HHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence 3333333333332 123333333333221 121 334455566677777777777765543
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A 407 (637)
+..+.++|...|...++++.-
T Consensus 279 ~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHH
Confidence 456788888888888876543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=0.0039 Score=57.74 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=29.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
+..+.+.++..-...+++.....| +......+.++|...++++.-++.++
T Consensus 255 V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 255 VNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 333445555556666666655434 23566777777887777665555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=2.7e-05 Score=62.05 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHH
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PN-----LKTFETLM 465 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-----~~~~~~l~ 465 (637)
..+...|.+.|++++|+..|.+.++.+ |.+..+|..+..+|.+.|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345556666666666666666666653 455666666666666666666666666666542110 00 12455555
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 006640 466 WGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...+++++|++.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555666666666666655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.3e-05 Score=61.61 Aligned_cols=89 Identities=8% Similarity=-0.024 Sum_probs=35.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006640 116 ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM---EEAMDTFWKMKESGLTPT-TSTYNTLIKGYGIAG 191 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 191 (637)
.+...+++++|.+.|++.++.+ +.++.++..+..++.+.++. ++|+.+|+++...++.|+ ..+|..+..+|.+.|
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g 86 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Confidence 3333444444444444444433 33344444444444332222 234444444433322211 123334444444444
Q ss_pred ChHHHHHHHHHHHh
Q 006640 192 KPEESVKLLDLMSR 205 (637)
Q Consensus 192 ~~~~A~~~~~~m~~ 205 (637)
++++|++.|+++.+
T Consensus 87 ~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 87 EYEKALKYVRGLLQ 100 (122)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.3e-05 Score=63.91 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-----HHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH-PQ-----KSTFLL 498 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~~~ 498 (637)
.+-.++..+...|++++|+..|++.++.++. +...+..+..+|.+.|++++|+..++++.+.... +. ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4556788899999999999999999987543 6889999999999999999999999998651110 11 246788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 499 LAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 499 l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+...+...+++++|...+++.....+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999998865533
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.00011 Score=61.61 Aligned_cols=126 Identities=9% Similarity=-0.081 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
..+....+.+.+.|++++|+..|.+.+........ ....-......+ -..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence 34455667888999999999999988763111000 000000000000 012455566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.+.|++++|+..++...+..+. ++.+|..+..+|...|++++|+..|+...+.. |.|......+...
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 139 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 6667777777777666665433 56666666666777777777777777666653 2344444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00016 Score=60.70 Aligned_cols=60 Identities=17% Similarity=-0.020 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|+.+..+|.+.|++++|+..+++.++.. |.++.+|..++.+|...|++++|+..|+++.+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444455555555555555544442 33444455555555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=0.00019 Score=58.91 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+|+.+..+|.+.|++++|+..++++++..+ .+..+|..++.++...|++++|+..|++..+ +.|+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n 134 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNN 134 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTC
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 455566666666666666666666666432 2455666666666666666666666666655 44543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.87 E-value=0.00037 Score=57.11 Aligned_cols=125 Identities=11% Similarity=0.012 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH----KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
..++..-.+.+.+.|++.+|+..|.+.+..-. .++..... ... .....+++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~------------------~~~------~~~~~~~~N 72 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD------------------KKK------NIEISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH------------------HHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH------------------hhh------hHHHHHHhh
Confidence 45566677888999999999999998876311 01111100 000 011245667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
+..+|.+.|++++|+..++...+.++. +..+|..+..+|...|++++|+..|++..+.. |.|..+...+-.+.
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 777888888888888888888776543 67788888888888888888888888888764 34555555544433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=1.1e-05 Score=81.28 Aligned_cols=112 Identities=7% Similarity=-0.080 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 319 VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
..+..+...+.+.++.+.|...+....... ...++..+...+...|++++|+..|.+..+.. +.+...|+.|...|
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 344444444445555555444443332211 12344455556666666666666666665542 23445666666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 399 VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 66666666666666666553 4555566666555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00023 Score=59.60 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..|..+..++.+.|++++|+..++++++..+ .+...|..+..++...|++++|+..|++..+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554332 1344555555555555555555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00044 Score=58.24 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=83.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 359 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 438 (637)
........|++++|.+.|...+..- +... +......+.+...-..+. +.....+..++..+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 3345677888888888888877642 1110 000000001111111111 1123567788889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHH
Q 006640 439 MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTFL 497 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 497 (637)
+++|+..++++.+... -+...|..++.+|...|+..+|++.|+++. +.|+.|..++-.
T Consensus 83 ~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 83 ASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999998653 377789999999999999999999998873 479999876543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.71 E-value=0.00098 Score=55.48 Aligned_cols=61 Identities=13% Similarity=-0.028 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|+.+..+|.+.|++++|+..+++.++..+ .+...|..+..++...|++++|...|+++.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555432 2444555555555556666666665555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.2e-05 Score=80.97 Aligned_cols=117 Identities=12% Similarity=-0.063 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 351 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
++...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|++..+.. |.+...|+.++
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg 193 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLA 193 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 345566777788888999999988877765431 23567788999999999999999999999874 66778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
..+...|+..+|+..|.+.+... +|-..++..|...+.+..
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999864 467778899988877644
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.00027 Score=59.16 Aligned_cols=134 Identities=7% Similarity=-0.015 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
.+......+...|++++|+..|.+++.. .............. ... +.....+..+..+|.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHH
Confidence 3455677788999999999999887641 00000001111110 000 224556777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+.|++++|+..+.+..+..+. ++.+|..+..+|...|++++|++.|.+..+.. |.+......+..+..+.....
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHH
Confidence 889999999988888887654 77888888888889999999999998888864 456666766666655444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=0.00012 Score=59.54 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=51.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE----------QEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
.+.+.+++|+..|+..++.. +.+..++..+..+|... +.+++|+..|+++++.+ |.+..+|..++.+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 34455666666666665543 33555555555555432 33456666666666653 45566666666666
Q ss_pred HhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 434 CSDGS-----------MDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 434 ~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
...|+ +++|.+.|+++.+. .|+...+.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~ 123 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 123 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHH
Confidence 54432 45555556555552 34444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.67 E-value=0.001 Score=55.41 Aligned_cols=129 Identities=8% Similarity=-0.069 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG---GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
...+....+.+.+.|++.+|+..|.+.+.. ....+... ......+ ...+|+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhH
Confidence 345566778888999999999998876641 11111100 0000000 12345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
..+|.+.|++++|+..++...+..+. +..+|..+..+|...|++++|+..|.++.... |.+......+.......+
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence 66677777777777777777766543 66677777777777777777777777777653 445555555554444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.0007 Score=56.92 Aligned_cols=125 Identities=9% Similarity=0.022 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006640 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...........|++++|...|.........+ .. ......+-+...-..+.. .....+..++..+.+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344456788999999999999988752111 00 000111111111111111 134567788999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKT 460 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 460 (637)
.|++++|+..++++.+.. +-+...|..++.+|...|+..+|++.|+++. +.|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999999999875 7789999999999999999999999999874 3689998765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.52 E-value=0.00012 Score=59.50 Aligned_cols=101 Identities=13% Similarity=-0.020 Sum_probs=74.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD----------GSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
|-+.+.+++|+..|+...+.. |.+..++..+..+|... +.+++|+..|+++++..+. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 456677999999999998875 77888888888887744 4457899999999886532 66788888888
Q ss_pred HHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 468 YSEARQ-----------PWRAEEILQIMKAFGVHPQKSTFLLLAEA 502 (637)
Q Consensus 468 ~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 502 (637)
|...|+ +++|.+.|++..+ +.|+...|...+..
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH
Confidence 876553 4667777777766 66776666544433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.51 E-value=7.1e-05 Score=67.69 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 476 (637)
..+.|++++|+..+++.++.. |.|...+..++..++..|++++|+..|+...+.. |+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 346799999999999999885 7788999999999999999999999999998853 54 3345545444443333332
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 477 AEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
+..-.......+ .|+ ...+......+.+.|+.++|...++++.+..|.
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 221111100111 222 234455567788999999999999998776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.39 E-value=0.00019 Score=64.72 Aligned_cols=120 Identities=12% Similarity=0.057 Sum_probs=55.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
+.|++++|+..+++.++..+. +...+..+...|+..|++++|.+.|+...+.. |.+...+..+...+...+..+++.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHHH
Confidence 445666666666666655433 55566666666666666666666666655542 223334443333333222222221
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
.-.......+-+++...+......+...|+.++|.+.+.++.+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1111100011111222333334455556666666666666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.12 E-value=0.0029 Score=51.68 Aligned_cols=95 Identities=16% Similarity=-0.030 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCC-
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGV-SPN----------LKTFETLMWGYSEARQPWRAEEILQIMKA-----FGVHPQ- 492 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~- 492 (637)
+..+...|++++|+..|++.++... .|+ ...|..+..+|...|++++|...+++..+ ....++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345566777777777777764210 011 34677777888888888888887777653 112222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 493 ----KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 493 ----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
...+..+..+|...|++++|...++++.+..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12456778899999999999999998876544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.0042 Score=50.66 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 006640 390 AYSIL--AKGYVREQEPEKAEELLMTMIESGF-HP----------NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH---- 452 (637)
Q Consensus 390 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 452 (637)
+|..+ ...+...|++++|+..|++.++... .| ....|+.+..+|...|++++|+..+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4456677888888888888775310 11 1357888888999999999999988887642
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 453 -GVSPN-----LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 453 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
...++ ...+..+..+|...|++++|+..|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2256778889999999999999998875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.013 Score=42.75 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESG-----FHP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
-.+...+.+.|++++|...|++..+.. ..+ ...+++.+..++.+.|++++|+..++++++.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 345555556666666666665554320 011 1344555555566666666666666665553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.014 Score=42.70 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~ 170 (637)
+..|..+|.+.|++++|+..++++.+
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 33344444444444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.14 E-value=0.086 Score=40.99 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAA 241 (637)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (637)
.++|+++|++..+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhc
Confidence 3444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.07 E-value=0.096 Score=40.71 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 006640 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQ 473 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 473 (637)
.+.++|.+++++..+.| ++.....|...|.. ..+.++|+++|++..+.| ++.....|...|.+ ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555555433 33333444443332 234555555555555543 23333334333333 224
Q ss_pred hhHHHHHHHHHHHCC
Q 006640 474 PWRAEEILQIMKAFG 488 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g 488 (637)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 445555555544433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=3 Score=39.60 Aligned_cols=386 Identities=10% Similarity=0.006 Sum_probs=176.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHH
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALT--IQKRFNSIHSIMSQVEENGMDPDSI----FFNAVINA 151 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~ 151 (637)
.+....+.|+..++.++...+.. . | ...|...-..-. ......++..++. + .|+.. .-...+..
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~---~---~p~~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFVR---A---NPTLPPARTLQSRFVNE 81 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHHH---H---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHHH---H---CCCChhHHHHHHHHHHH
Confidence 45667788999998888888742 2 3 223332222211 2234444443332 3 23322 23334566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.+++......+. ..+.+...-.....+....|+.++|...+..+-..|...|+. ...+...+.+.|.+
T Consensus 82 L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~~~l-- 152 (450)
T d1qsaa1 82 LARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASGKQ-- 152 (450)
T ss_dssp HHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTTCS--
T ss_pred HHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCCC--
Confidence 777788766544332 123356666677788888899888888888776666444433 22222222222221
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------HHCCCCCChhhH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM-------------------------EHNGVQPNGRTC 286 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------------------~~~~~~~~~~~~ 286 (637)
+...+-.-+......|+...|..+...+ ... ..+....
T Consensus 153 ---------------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~--~~~~~~~ 215 (450)
T d1qsaa1 153 ---------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTT--GATDFTR 215 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHS--CCCHHHH
T ss_pred ---------------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcC--CCChhhh
Confidence 1111111222222233333333322211 011 1122222
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006640 287 GIIISGYCK--EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGF----VEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 287 ~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 360 (637)
..+..++.+ ..+.+.|..++....... ..+..-+..+-... ...+..+.+...+......+ .+.....-.+
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~ 292 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHH
Confidence 222222222 234555555555554332 12222222221111 12233444544444444332 2233323333
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
......++...+...+..+... ......-.--+..++...|+.+.|...|..+.. .++ .|.-|... +.|..-
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~ 364 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQ--RIGEEY 364 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHH--HTTCCC
T ss_pred HHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHH--HcCCCC
Confidence 3344455666666666554322 111233334455566666666666666666543 222 22222111 111100
Q ss_pred HHHHHHHHHHHCCCC--CC-HH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 441 RAIEVFDKMCEHGVS--PN-LK---TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~--p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~ 514 (637)
. +....+. +. .. .-..-+..+...|+..+|...|..+... .+......+.....+.|.++.|+.
T Consensus 365 ~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 365 E-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp C-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred C-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHH
Confidence 0 0000000 00 00 0112345667788888888888777542 245556667777888888888887
Q ss_pred HHHHHh
Q 006640 515 ILSKIK 520 (637)
Q Consensus 515 ~~~~~~ 520 (637)
...+..
T Consensus 435 a~~~~~ 440 (450)
T d1qsaa1 435 ATIAGK 440 (450)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 776653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.66 E-value=0.95 Score=33.62 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=74.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006640 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 374 (637)
-.|.+++..++..+.... .+..-||-++--....-+-+...++++.+-+. .|. ..++++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 356667777777666653 34444555554444444444444444443221 110 12222322222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 454 (637)
.+-.+ ..+.......++...++|.-+.-.++++.+.+.+ .+++...-.+..+|.+.|...++-+++.++.+.|+
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 22111 1233444555566677777777777777765543 66777777777777777777777777777777665
Q ss_pred C
Q 006640 455 S 455 (637)
Q Consensus 455 ~ 455 (637)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=0.84 Score=34.16 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 455 SPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|...|--....++.++.. .++|+.++++..+. .|. .+.+-.+.-+|.+.|++++|.++++++....|.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3555565556666666543 34667777666542 232 234445555677777777777777777666553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.81 Score=34.25 Aligned_cols=71 Identities=6% Similarity=0.016 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 421 PNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
+.+.+--...+++.+.. +.++|+.+|++..+.+. .+. ..+-.|.-+|.+.|++++|..+++.+.+ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 44444444555555433 34556666666655321 122 3445555566666666666666666655 555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.35 E-value=1.5 Score=32.49 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
..+...++....+|+-+.-.++++.+.+.+ ++++.....+..+|.+.|...++.+++.+.-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344445555555566555555555554432 45555555566666666666666666666655554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.39 E-value=1.9 Score=30.25 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.-+..+-++.+..+.+.|+.....+.+.+|.|.+++.-|.++++.++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44566666666667888899999999999999999999999999988755
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.11 E-value=4.3 Score=28.42 Aligned_cols=48 Identities=6% Similarity=0.074 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
.-++.+.+..+......|++.+..+.+.+|.+.+++..|..+|+.+..
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555566667777777777777777777777777766654
|