Citrus Sinensis ID: 006644

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------
METDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
ccHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEEEEEEcHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEccEEEEEcccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEEEEcHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHcccccEEccccccccccccEEEcHHHHHHHHHHHccccccEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHccccccccccccEccccEEccccccccccccEEEEcEEEEEcHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEccEEcccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEccccccEEEEcccccccccEEEEcHHHHHHHHccccccEcccccccccccccEEcHHHHHHHHHHHcccccccEEEEccccccccccccccEEcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccEEEEEccc
METDLVASSKGKLVNFRMKELKDVLtklglpkqgkkqdLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAedslnlggkifcpcgtslpseskiqcvdprclvqqhiscviipekpmeeirllpplffcetcrikradpfWITVAHLVSpmklvasniptdgtnpLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLvrtvnrpgtqllgsngrddGALITLYIGegvnqislsgcdirnfcFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCfggvatgnedgdsdlEIIADSIIVnlrcpmsgsrirvagrfkpcvhtgcfdLETFVELNQRtrkwqcpicmknysledliidpYFHRITTMMRNFADDLTEIEvkhdgswrvkckgennnlaewhspdgstyaarsevvsnsetkqLVNSGQTIIARIKKNLSanvdvskywstspnkhmsyhvENNSEKIITmsssasgcsrdeedptvnqdtnsrkdlndiphridpifgtgnqtdgligdtdiivlsdseedndhlapstsyqsyhpidsapdgisslrgdpkctrtndakifdgpfsfprqprsvrqkvhls
metdlvasskgklvnfrMKELKDVltklglpkqgkkqdlVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPgtqllgsngrdDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVlslvpketagevfedalTRVRRCFGgvatgnedgdsdlEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVsnsetkqlvnSGQTIIARIKKNLSANVDVSKYwstspnkhmsyHVENNSEKIITMSssasgcsrdeedptvnqdtnsrkdlndipHRIDPIfgtgnqtdgliGDTDIIVLSDSEEDNDHLapstsyqsyhpidsapdgisslrgdPKCTRTNDakifdgpfsfprqprsvrqkvhls
METDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
*************VNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEW**************************GQTIIARIKKNLSANVDVSKYWS****************************************************RIDPIFGTGNQTDGLIGDTDIIVL*******************************************************************
******ASSKGKLVNFRMKELKDVLTKLGLPKQ*KKQDLVDRIFHQLSDEGVARIIDDTYR****************************************************************************************ETCRIKRADPFWITVAHLVSPMKLVASNI*****NPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVR******************ALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC************SDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWR*************************************************************************************************************************************************************************************************************
**********GKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITM********************NSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQ***********
*ETDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISE********************************************SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLA********************************************************************************************NSRKDLNDIPHRIDPIFGTGNQT****GDTDI**LSDSEEDNDH*****SY************I*SL***********AKIFDGPFSFPRQPRSVRQK****
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METDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query637 2.2.26 [Sep-21-2011]
Q680Q4 884 E3 SUMO-protein ligase SI yes no 0.968 0.697 0.505 1e-176
Q6L4L4 875 E3 SUMO-protein ligase SI yes no 0.904 0.658 0.509 1e-171
Q6ASW7 813 E3 SUMO-protein ligase SI no no 0.880 0.690 0.472 1e-150
Q6P1E11072 Zinc finger MIZ domain-co yes no 0.357 0.212 0.280 3e-18
Q9ULJ61067 Zinc finger MIZ domain-co yes no 0.357 0.213 0.280 3e-18
O94451 727 E3 SUMO-protein ligase pl yes no 0.409 0.359 0.27 7e-17
Q8NF64920 Zinc finger MIZ domain-co no no 0.348 0.241 0.273 3e-16
Q6AZ28572 E3 SUMO-protein ligase PI no no 0.599 0.667 0.261 6e-16
Q8CIE2920 Zinc finger MIZ domain-co no no 0.348 0.241 0.268 7e-16
O75928621 E3 SUMO-protein ligase PI no no 0.601 0.616 0.266 1e-15
>sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2 Back     alignment and function desciption
 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 344/680 (50%), Positives = 440/680 (64%), Gaps = 63/680 (9%)

Query: 4   DLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE------------- 50
           DL A+ K KL  FR+KELKDVLT+LGL KQGKKQ+LVDRI   LSDE             
Sbjct: 2   DLEANCKEKLSYFRIKELKDVLTQLGLSKQGKKQELVDRILTLLSDEQAARLLSKKNTVA 61

Query: 51  --GVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSL 108
              VA+++DDTYRKMQ+S A+DLA  GQ   D  N+KV+ E ED      K+ C CG SL
Sbjct: 62  KEAVAKLVDDTYRKMQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGNSL 121

Query: 109 PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLV 168
            ++S IQC DPRC V QH+ CVI+P+KPM+    LP  F+CE CR+ RADPFW+TVAH +
Sbjct: 122 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTRADPFWVTVAHPL 181

Query: 169 SPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWP 228
           SP++L A+ IP DG + +Q  E  F +T+A  DLL   EYDVQAWC+LLNDKV FRMQWP
Sbjct: 182 SPVRLTATTIPNDGASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQWP 241

Query: 229 LHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVR 288
            +A+LQVNG+ VR +NRPG QLLG NGRDDG +IT  I +GVN+ISLSG D+R FCFGVR
Sbjct: 242 QYADLQVNGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFGVR 301

Query: 289 LVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCF-GGVATGNEDGDSDLEIIADSIIVNL 347
           LVKR+T+ QVL+L+P+E  GE FEDAL RVRRC  GG    N D DSD+E++AD   VNL
Sbjct: 302 LVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVNL 361

Query: 348 RCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFH 407
           RCPMSGSRI+VAGRF PCVH GCFDL+ FVELNQR+RKWQCPIC+KNYS+E +I+DPYF+
Sbjct: 362 RCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFN 421

Query: 408 RITTMMRNFADDLTEIEVKHDGSWRVKCKGEN-----NNLAEWHSPDGSTYAARSEVVSN 462
           RIT+ M++  +++TEIEVK DGSWRVK K E+       L++WH+PDGS   +  ++   
Sbjct: 422 RITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRK 481

Query: 463 SETKQLVNSGQT-----IIARIKKNLSANVDVSK-----YWSTSPNKHMSYHVENNSEKI 512
            E   +   G +     +   I+KN +   +VSK       S++  + + Y  +N    I
Sbjct: 482 MEMLPVKQEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKN----I 537

Query: 513 ITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPI---------FGTGNQTDGLIG 563
           I MSSSA+G  RD +D +VNQD     D       +D I         F   NQ+ G  G
Sbjct: 538 IPMSSSATGSGRDGDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQS-GEGG 596

Query: 564 DTDIIVLSDSEEDNDH-LAPSTSYQSYH-------PIDSAPDGISSLRGDPKCTRT---- 611
           + ++IVLSDS+++ND  + P  +Y           P++  P  I+S   DP         
Sbjct: 597 NNEVIVLSDSDDENDLVITPGPAYSGCQTDGGLTFPLN-PPGIINSYNEDPHSIAGGSSG 655

Query: 612 ----NDAKIFDGP-FSFPRQ 626
               ND   FD P +SFP +
Sbjct: 656 LGLFNDDDEFDTPLWSFPSE 675
E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing tolerance by mediating sumoylation of ICE1, a transcription activator of the cold signaling regulator CBF3/DREB1A. Acts as positive regulator of drought stress tolerance. Acts as floral repressor that promotes FLC expression by repressing FLD activity through sumoylation. Acts as negative regulator of abscisic acid (ABA) signaling through ABI5 sumoylation. Mediates sumoylation of SCE1, GTE3 and GTE5.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q6L4L4|SIZ1_ORYSJ E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ASW7|SIZ2_ORYSJ E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P1E1|ZMIZ1_MOUSE Zinc finger MIZ domain-containing protein 1 OS=Mus musculus GN=Zmiz1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULJ6|ZMIZ1_HUMAN Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3 Back     alignment and function description
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3 Back     alignment and function description
>sp|Q8NF64|ZMIZ2_HUMAN Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2 Back     alignment and function description
>sp|Q6AZ28|PIAS2_RAT E3 SUMO-protein ligase PIAS2 OS=Rattus norvegicus GN=Pias2 PE=1 SV=1 Back     alignment and function description
>sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2 OS=Mus musculus GN=Zmiz2 PE=2 SV=2 Back     alignment and function description
>sp|O75928|PIAS2_HUMAN E3 SUMO-protein ligase PIAS2 OS=Homo sapiens GN=PIAS2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query637
255570825 876 sumo ligase, putative [Ricinus communis] 0.937 0.681 0.531 0.0
225435251 876 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.905 0.658 0.556 0.0
449459066 869 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.926 0.678 0.530 0.0
356550169 885 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.919 0.662 0.528 1e-180
356550167 880 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.919 0.665 0.528 1e-180
224112985614 predicted protein [Populus trichocarpa] 0.891 0.925 0.546 1e-179
297819032 873 predicted protein [Arabidopsis lyrata su 0.954 0.696 0.506 1e-178
356543432 882 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.919 0.664 0.521 1e-178
356543434 895 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.919 0.654 0.521 1e-178
357472339 882 E3 SUMO-protein ligase SIZ1 [Medicago tr 0.935 0.675 0.521 1e-177
>gi|255570825|ref|XP_002526365.1| sumo ligase, putative [Ricinus communis] gi|223534324|gb|EEF36036.1| sumo ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/645 (53%), Positives = 442/645 (68%), Gaps = 48/645 (7%)

Query: 4   DLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGV----------- 52
           DLV S K KL  FR+KELKDVLT+LGL KQGKKQDLVDRI   L+DE V           
Sbjct: 2   DLVTSCKDKLAYFRIKELKDVLTQLGLSKQGKKQDLVDRILAVLTDEQVPKTSAKKSVVG 61

Query: 53  ----ARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSL 108
               A+++DD YRKMQ+S A DLA  G+  L+     ++ E +DS +   K+ CPCG+SL
Sbjct: 62  KEEVAKLVDDIYRKMQVSGATDLASKGEGVLESSKPVIKGEIDDSFHFDTKVRCPCGSSL 121

Query: 109 PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLV 168
            +ES I+C DPRC V QHI CVIIPEKPME I  +P LF+CE CR+ RADPFW++VAH +
Sbjct: 122 ETESMIKCEDPRCRVWQHIGCVIIPEKPMEAIPQVPDLFYCEICRLCRADPFWVSVAHPL 181

Query: 169 SPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWP 228
            P+KL  +NI  DG+ P+Q AE  FHLT+A  DLL   EYDVQAWC+LLNDKV FRMQWP
Sbjct: 182 YPVKLT-TNIQADGSTPVQSAEKTFHLTRADKDLLAKQEYDVQAWCMLLNDKVPFRMQWP 240

Query: 229 LHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVR 288
            +A+LQVNG+ VR +NRPG+QLLG NGRDDG +IT    +G+N+ISL+GCD R FC GVR
Sbjct: 241 QYADLQVNGVPVRAINRPGSQLLGINGRDDGPIITPCTKDGINKISLNGCDARIFCLGVR 300

Query: 289 LVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLR 348
           +VKR+TV Q+L+++PKE+ GE FEDAL RV RC GG A  N D DSDLE++ADS  VNLR
Sbjct: 301 IVKRRTVQQILNMIPKESDGERFEDALARVCRCVGGGAADNADSDSDLEVVADSFAVNLR 360

Query: 349 CPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHR 408
           CPMSGSR++VAGRFKPC H GCFDLE F+E+NQR+RKWQCP+C+KNYSLE++IIDPYF+R
Sbjct: 361 CPMSGSRMKVAGRFKPCAHMGCFDLEVFLEMNQRSRKWQCPVCLKNYSLENVIIDPYFNR 420

Query: 409 ITTMMRNFADDLTEIEVKHDGSWRVKCKGEN-----NNLAEWHSPDGS-----TYAARSE 458
           +T+ M++  +D+TEIEVK DGSWR K K E        LA+WH+PDGS     +   +S+
Sbjct: 421 VTSKMQHCGEDITEIEVKPDGSWRAKTKSEAERRDVGELAQWHNPDGSLCVPISGEHKSK 480

Query: 459 VVSNSETKQLVNS----GQTIIARIKKNLSANVDVSK---YWSTSPNKHMSYHVENNSEK 511
           V    + KQ  NS    G  +   I+KN +   +VSK     ++S    +    E   +K
Sbjct: 481 VEMEKQIKQEGNSEGYNGTGLKLGIRKNRNGFWEVSKPEDVNTSSSGNRLPERFEIIEQK 540

Query: 512 IITMSSSASGCSRDEEDPTVNQD-------TNSRKDLNDIPHRIDPIFGTGNQT-DGLIG 563
           +I MSSSA+G  RD EDP+VNQD       TN+  +L+ +P  +D  +G  ++     + 
Sbjct: 541 VIPMSSSATGSGRDGEDPSVNQDGGGNFDFTNNGIELDSLPLNVDSTYGFPDRNFSAPVE 600

Query: 564 DTDIIVLSDSEEDNDHLAPS-TSYQSYHPIDSA------PDGISS 601
           D ++IVLSDS++DND L  + T Y++    D        P+GIS+
Sbjct: 601 DPEVIVLSDSDDDNDILMTTGTVYKNSQTDDGGAGFSMPPNGISN 645

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435251|ref|XP_002284945.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459066|ref|XP_004147267.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] gi|449511458|ref|XP_004163961.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550169|ref|XP_003543461.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356550167|ref|XP_003543460.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224112985|ref|XP_002316352.1| predicted protein [Populus trichocarpa] gi|222865392|gb|EEF02523.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297819032|ref|XP_002877399.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323237|gb|EFH53658.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356543432|ref|XP_003540164.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356543434|ref|XP_003540165.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357472339|ref|XP_003606454.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] gi|355507509|gb|AES88651.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query637
ZFIN|ZDB-GENE-080220-271068 zmiz1a "zinc finger, MIZ-type 0.398 0.237 0.298 4.6e-19
UNIPROTKB|F1NFB5970 F1NFB5 "Uncharacterized protei 0.398 0.261 0.288 1e-17
UNIPROTKB|I3L8P9943 I3L8P9 "Uncharacterized protei 0.398 0.269 0.288 2.7e-17
UNIPROTKB|I3LDU8985 I3LDU8 "Uncharacterized protei 0.398 0.257 0.288 2.9e-17
UNIPROTKB|I3LJD11021 ZMIZ1 "Uncharacterized protein 0.398 0.248 0.288 3.1e-17
UNIPROTKB|F1MP121066 ZMIZ1 "Uncharacterized protein 0.398 0.238 0.288 3.3e-17
UNIPROTKB|Q9ULJ61067 ZMIZ1 "Zinc finger MIZ domain- 0.398 0.238 0.288 3.3e-17
UNIPROTKB|E2RGZ01072 ZMIZ1 "Uncharacterized protein 0.398 0.236 0.288 3.3e-17
UNIPROTKB|F1S2E41072 ZMIZ1 "Uncharacterized protein 0.398 0.236 0.288 3.3e-17
MGI|MGI:30406931072 Zmiz1 "zinc finger, MIZ-type c 0.398 0.236 0.288 3.3e-17
ZFIN|ZDB-GENE-080220-27 zmiz1a "zinc finger, MIZ-type containing 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 264 (98.0 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 84/281 (29%), Positives = 137/281 (48%)

Query:   193 FHLTKA-HSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLL 251
             FHL  + H  L+  ++ ++Q  C    D+      WP   ++ VN   + T+ R      
Sbjct:   590 FHLRPSVHQTLMWRSDLELQFKCYHHEDR-QMNTNWPASVQVSVNATPL-TIER------ 641

Query:   252 GSNGRDDGALITLYI---GEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAG 308
             G N      L   ++   G    QI+++ C   +  F ++LV R +V  VL  + K+   
Sbjct:   642 GDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHL-FVLQLVHRPSVRSVLQGLLKKRLL 700

Query:   309 EVFEDALTRVRRCFGGVA--TGNE--DGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKP 364
                E  +T+++R F  VA  TGN   +G+  +E  A  I V+L+CP++  RI++  R   
Sbjct:   701 PA-EHCITKIKRNFSSVAASTGNATLNGEDGVEQTA--IKVSLKCPITFRRIQLPARGHD 757

Query:   365 CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIE 424
             C H  CFDLE++++LN     W+CP+C K   LE L +D Y   I   ++N   +  E+ 
Sbjct:   758 CKHVQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQN--SEFEEVN 815

Query:   425 VKHDGSWR-VKCKGENNNLAEWHSPDGSTYAARSEVVSNSE 464
             +    SWR V  K + + + E   PDG   A R + +S S+
Sbjct:   816 IDPTCSWRPVPIKSDIH-IKE--DPDGPL-AKRFKTMSPSQ 852
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|F1NFB5 F1NFB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3L8P9 I3L8P9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDU8 I3LDU8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJD1 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MP12 ZMIZ1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULJ6 ZMIZ1 "Zinc finger MIZ domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ0 ZMIZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2E4 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:3040693 Zmiz1 "zinc finger, MIZ-type containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6L4L4SIZ1_ORYSJ6, ., 3, ., 2, ., -0.50970.90420.6582yesno
Q680Q4SIZ1_ARATH6, ., 3, ., 2, ., -0.50580.96860.6979yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.2569.1
hypothetical protein (614 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query637
pfam0289150 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger 1e-17
pfam0203735 pfam02037, SAP, SAP domain 1e-06
smart0051335 smart00513, SAP, Putative DNA-binding (bihelical) 3e-05
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger Back     alignment and domain information 
 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 345 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKN 394
           V+L+CP+S  RI +  R + C H  CFDL +F+E N+RT  W CP+C K 
Sbjct: 1   VSLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVCDKP 50

This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50
>gnl|CDD|202100 pfam02037, SAP, SAP domain Back     alignment and domain information
>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 637
KOG2169636 consensus Zn-finger transcription factor [Transcri 100.0
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 99.82
PF14324144 PINIT: PINIT domain; PDB: 3I2D_A. 99.7
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.45
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 97.85
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 97.71
KOG2979262 consensus Protein involved in DNA repair [General 97.19
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.19
KOG1973274 consensus Chromatin remodeling protein, contains P 96.76
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 96.47
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.01
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 95.66
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 94.83
COG5627275 MMS21 DNA repair protein MMS21 [DNA replication, r 93.47
COG5222427 Uncharacterized conserved protein, contains RING Z 92.06
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 90.65
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 89.86
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 89.51
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 89.44
KOG1844508 consensus PHD Zn-finger proteins [General function 88.11
PF04641260 Rtf2: Rtf2 RING-finger 87.48
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 86.37
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 83.86
cd0016245 RING RING-finger (Really Interesting New Gene) dom 80.09
>KOG2169 consensus Zn-finger transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3e-41  Score=383.77  Aligned_cols=366  Identities=21%  Similarity=0.374  Sum_probs=263.2

Q ss_pred             hhcChHHHHHHH-HHcCCCCCC--ChHHHHHHHHHhcCchh---HHHHHHHHHHH-hhc--ccchhhhhccCCCCccccc
Q 006644           14 VNFRMKELKDVL-TKLGLPKQG--KKQDLVDRIFHQLSDEG---VARIIDDTYRK-MQI--SEAADLAIMGQSGLDICNV   84 (637)
Q Consensus        14 ~sFRv~ELq~lL-~~lg~~KsG--rK~eL~~R~L~lL~~~~---v~~kI~elYr~-~~~--~~~~~~a~~~~~~~~~~~~   84 (637)
                      |++|++|||.++ ++.++++.|  +|++|+.|+|.++..+|   ++++|+|+|++ +.+  ..+.++....         
T Consensus         1 m~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~q~~i~~~~~~~~~~~~~~~~~~~~~~---------   71 (636)
T KOG2169|consen    1 MSLRVSSLQVLLSGAIGRSFPGQVNKHKLAPRALTLVGSGCKPYLQMVIKELYQRQYPNGQQQPIDLPAVK---------   71 (636)
T ss_pred             CCcccccccccchhhhccccccccchhhhhhhhhcccccCCchhhhhhhhhhhhhhccccccccccccccc---------
Confidence            589999999999 999999999  99999999999999998   79999999985 322  2222221111         


Q ss_pred             cccccccc-ccCCCCcccccCCCCCCCCCceeecCccccccccccccccCCCCcccc--cCCCCcccccccccccCCchh
Q 006644           85 KVEMEAED-SLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEI--RLLPPLFFCETCRIKRADPFW  161 (637)
Q Consensus        85 ~~~~~~~~-~~~~~~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~--p~~p~~f~C~~CRL~~~dPF~  161 (637)
                       .+..... .+.                ..       |....|..-...+.-.+.+-  +.++++      ++ +..|||
T Consensus        72 -~~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~------~~-~~~~~y  120 (636)
T KOG2169|consen   72 -LHPNVVPPFYP----------------LL-------WQLLRHPTQQPVTPSSLLGPPLPFHPDV------KL-KKLPFY  120 (636)
T ss_pred             -cCCcccCcccc----------------ch-------hcccccCCCCCCCcccccCCCCcCCCcc------cc-cCCchh
Confidence             0000000 000                00       11111111000111000110  234444      44 469999


Q ss_pred             HhhhhhcCceeeeeccccCCCCCCCceEEEEEEeCHhhHHhhcCC-C------ceEEEEEEecCCCccccccCCCceEEE
Q 006644          162 ITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT-E------YDVQAWCILLNDKVSFRMQWPLHAELQ  234 (637)
Q Consensus       162 ~~i~~lL~Pv~L~~s~i~~~g~~~~Qs~~~~F~Lt~~q~~~L~~~-~------~~lqv~Ci~l~d~~~~~~~wP~~~~I~  234 (637)
                      +++..+++|+.+.++..     ..++...+.|.|++++...+... +      ..-.+ |.. ....+++.+||.++.++
T Consensus       121 ~~l~~~~~p~~~~~~~~-----~~~~~~~~~f~lt~~~~~~i~~~~~~~~~~k~~~~~-~~~-~~s~p~e~~~p~~~~~~  193 (636)
T KOG2169|consen  121 DVLSELIKPHVLHSSNS-----PSLSESPFLFALTPEQVSGISSRPDVLPGSKSEGSV-CLM-ETSCPQEDHFPPNVQVK  193 (636)
T ss_pred             eecccccCceeecCcCC-----CCcccccchhhcchhhhhhcccccccccccccccce-eec-cccCccccccCceeEEE
Confidence            99999999998876532     35567788999999998766431 1      11111 554 34567889999999999


Q ss_pred             ECCeEeeecCCCCccc---C-CCCCCCCCCc-ccc--ccCCc-ccEEEEEEe--ccceEEEEEEEEeecCHHHHHHhccc
Q 006644          235 VNGLLVRTVNRPGTQL---L-GSNGRDDGAL-ITL--YIGEG-VNQISLSGC--DIRNFCFGVRLVKRQTVAQVLSLVPK  304 (637)
Q Consensus       235 VNg~~v~~~~RP~~~~---~-g~~gR~~~p~-IT~--~lk~g-~N~I~Is~~--d~~~y~~~V~lVk~~t~e~Ll~~I~~  304 (637)
                      ||+..+....  +...   . -..+|...|. ||.  ++..- .|.+.+.|.  .++.|.+++|+|+.++.++||++++.
T Consensus       194 vn~~~~~l~~--~~~~~n~~~~~~~~~~~P~n~t~~~~~~~~~~~~~~~~~~~~~~~~ysl~~~~v~~~t~~~llq~~~~  271 (636)
T KOG2169|consen  194 VNNSPCQLPF--GYMPNNKHGLEPKRPSRPGNITSLSRLSVTTPNQITVLWTAQGGKSYSLSVYFVEGLTSKDLLQRLKQ  271 (636)
T ss_pred             ecCCcceeec--cccCCCCcccccCCCCCCCcCcccccccccccccceEEEEeccCcccceEEEEecccCHHHHHHHHhc
Confidence            9999888631  2211   1 1235666666 998  44433 377777664  57899999999999999999999986


Q ss_pred             cCC-CCcHHHHHHHHHHhhCCccCCCCCCCCCcceeeeceEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHccC
Q 006644          305 ETA-GEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRT  383 (637)
Q Consensus       305 ~~~-~~~~edal~rIkr~l~~~~~~~~dsDdD~EIv~~s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~  383 (637)
                      ..+ ...++.+.+.+++.+        ..+.|.||+++++.|||.|||+++||++|+|+..|+|+||||+.+||+||+++
T Consensus       272 ~~~~~~~~~~s~~~~~~~l--------~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~  343 (636)
T KOG2169|consen  272 NGKINRNLSQSDALIKKKL--------TAGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQK  343 (636)
T ss_pred             cCCccCchhHhHHHhhccc--------ccCCcccceeccceeEecCCcccceeecCCcccccccceecchhhhHHhccCC
Confidence            432 223355666666433        34566689999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCCCCCeeecHHHHHHHHHHhcCCCCccEEEEccCCceEEeccCCC
Q 006644          384 RKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGEN  439 (637)
Q Consensus       384 ~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~  439 (637)
                      ++|+||||++.+.+++|+||+||..||.   +|..+++||++..||+|++...+.+
T Consensus       344 pTW~CPVC~~~~~~e~l~iD~~~~~iL~---~~~~~~~ev~~~~dGsw~pi~~~~~  396 (636)
T KOG2169|consen  344 PTWRCPVCQKAAPFEGLIIDGYFLNILQ---SCQANVEEVEVSEDGSWKPIPEEAE  396 (636)
T ss_pred             CeeeCccCCccccccchhhhHHHHHHHh---hccCCCcceEecCCCceecCccccc
Confidence            9999999999999999999999999974   5566799999999999999987655

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query637
2rno_A110 Solution Structure Of The N-Terminal Sap Domain Of 5e-19
4fo9_A360 Crystal Structure Of The E3 Sumo Ligase Pias2 Lengt 5e-15
2rsd_A68 Solution Structure Of The Plant Homeodomain (Phd) O 5e-12
1wew_A78 Solution Structure Of Phd Domain In Dna-Binding Fam 5e-12
3i2d_A371 Crystal Structure Of S. Cerevisiae Sumo E3 Ligase S 7e-11
>pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3 Ligases From Oryza Sativa Length = 110 Back     alignment and structure 
Iteration: 1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 17/102 (16%)
Query: 3   TDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD------------- 49
            DLV+S K KL  FR+KELKD+L +LGLPKQGKKQDL+DR+   L+D             
Sbjct: 7   ADLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKN 66
Query: 50  ----EGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVE 87
               E VA+I+DDTYRKMQI  A DLA    SG D     +E
Sbjct: 67  SLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIE 108
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2 Length = 360 Back     alignment and structure
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The E3 Sumo Ligase Siz1 From Rice Length = 68 Back     alignment and structure
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family Protein Aam98074 Length = 78 Back     alignment and structure
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1 Length = 371 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query637
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 4e-57
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 1e-51
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 2e-25
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 3e-17
1wew_A78 DNA-binding family protein; structural genomics, P 4e-16
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 8e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-07
1wem_A76 Death associated transcription factor 1; structura 5e-07
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 1e-05
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 5e-05
1wee_A72 PHD finger family protein; structural genomics, PH 1e-04
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 2e-04
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 2e-04
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 Back     alignment and structure
 Score =  196 bits (498), Expect = 4e-57
 Identities = 62/318 (19%), Positives = 133/318 (41%), Gaps = 31/318 (9%)

Query: 156 RADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT--EYDVQAW 213
           +  PF+  +  L+         +  + T       A F L+KA  +LL N   ++ +  +
Sbjct: 69  KESPFY-KIQRLIPE-----LVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLF 122

Query: 214 CIL---LNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGV 270
             +   L  + +  +Q+P   EL+ N + ++   R      G+    D   +T ++    
Sbjct: 123 SGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPAD---LTPHLKPYT 179

Query: 271 NQISLS---GCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVAT 327
            Q ++        + +     +V+  T  Q+L  V +       +  L  +++       
Sbjct: 180 QQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKII-KQATLLYLKKTL----- 233

Query: 328 GNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQ 387
                D ++ +   S I++L+CP+S +R++   +   C H  CFD   F+    +   WQ
Sbjct: 234 ---REDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQ 290

Query: 388 CPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHS 447
           CP+C  + +LE+L I  +   I   ++N   ++ ++E+  DG W    + ++++  +  S
Sbjct: 291 CPVCQIDIALENLAISEFVDDI---LQNCQKNVEQVELTSDGKWTAILEDDDDS--DSDS 345

Query: 448 PDGSTYAARSEVVSNSET 465
            DGS    +  +   +  
Sbjct: 346 NDGSRSPEKGTLGEGAAA 363
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Length = 110 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 65 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Length = 114 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query637
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 100.0
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 100.0
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 99.9
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 99.84
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 98.89
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.73
1wew_A78 DNA-binding family protein; structural genomics, P 98.7
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.87
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.84
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.77
1wee_A72 PHD finger family protein; structural genomics, PH 97.71
1wem_A76 Death associated transcription factor 1; structura 97.58
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 97.55
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 97.53
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 97.52
1we9_A64 PHD finger family protein; structural genomics, PH 97.45
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 97.34
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 97.33
1weu_A91 Inhibitor of growth family, member 4; structural g 97.31
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.25
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 97.11
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 97.09
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 96.97
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 96.84
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 96.83
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 96.8
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 96.75
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 96.6
1x4i_A70 Inhibitor of growth protein 3; structural genomics 96.6
2k16_A75 Transcription initiation factor TFIID subunit 3; p 96.57
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.57
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 96.5
3kv5_D488 JMJC domain-containing histone demethylation prote 96.4
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 96.39
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 96.34
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 96.34
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 96.27
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 96.2
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 96.09
2f42_A179 STIP1 homology and U-box containing protein 1; cha 96.01
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 95.85
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 95.21
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 95.2
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 95.17
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 95.11
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 94.89
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 94.79
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 94.53
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 94.5
1z6u_A150 NP95-like ring finger protein isoform B; structura 94.28
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 94.0
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 93.98
2ecw_A85 Tripartite motif-containing protein 30; metal bind 93.65
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 93.6
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 93.26
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 92.09
2ysl_A73 Tripartite motif-containing protein 31; ring-type 91.84
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 91.5
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 91.44
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 91.35
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 90.87
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 90.55
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 90.26
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 89.97
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 89.71
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 89.36
2jx3_A131 Protein DEK; alpha helix, SAF/SAP motif, DNA bindi 88.5
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 88.44
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 87.98
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 86.87
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 86.61
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 85.34
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 85.29
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 85.18
2ect_A78 Ring finger protein 126; metal binding protein, st 85.05
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 84.92
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 84.71
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 84.41
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 83.72
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 83.52
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 83.46
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 83.42
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 82.85
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 82.34
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 80.57
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
Probab=100.00  E-value=9.8e-56  Score=466.94  Aligned_cols=288  Identities=26%  Similarity=0.407  Sum_probs=211.8

Q ss_pred             cCCCCcccccccccccCCchhHhhhhhcCceeeeeccccCCCCCCCceEEEEEEeCHhhHHhhcCC---------CceEE
Q 006644          141 RLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT---------EYDVQ  211 (637)
Q Consensus       141 p~~p~~f~C~~CRL~~~dPF~~~i~~lL~Pv~L~~s~i~~~g~~~~Qs~~~~F~Lt~~q~~~L~~~---------~~~lq  211 (637)
                      +.||++.      |+ .+|||+++++|++|+.|.++     ++.++|+..+.|.||++|...++.+         +|.+|
T Consensus        13 ~~~~~~~------~k-~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vq   80 (360)
T 4fo9_A           13 NLYFQGQ------LK-NLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQ   80 (360)
T ss_dssp             ----CCC------BC-CCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEE
T ss_pred             ccCCCce------ec-CCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEE
Confidence            6688885      44 68999999999999999865     3467899999999999999888642         35555


Q ss_pred             E---EEEecCCCccccccCCCceEEEECCeEeeecCCCCcccCCC-CCCCCCCc-cccccCCc---ccEEEEEEe-c-cc
Q 006644          212 A---WCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGS-NGRDDGAL-ITLYIGEG---VNQISLSGC-D-IR  281 (637)
Q Consensus       212 v---~Ci~l~d~~~~~~~wP~~~~I~VNg~~v~~~~RP~~~~~g~-~gR~~~p~-IT~~lk~g---~N~I~Is~~-d-~~  281 (637)
                      |   +|.. ++..++++.||.+++|+|||+.|+....-..++.|. ++|...|+ ||++++.+   .|+|+|+|. + ++
T Consensus        81 vqlRfC~~-~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~  159 (360)
T 4fo9_A           81 VQLRLCLA-ETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGK  159 (360)
T ss_dssp             EEEEEEEC--C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTB
T ss_pred             EEEEEEEc-cCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCc
Confidence            5   4655 567788999999999999999999642101122232 35555565 99999987   599999996 3 68


Q ss_pred             eEEEEEEEEeecCHHHHHHhccccCCCCcHHHHHHHHHHhhCCccCCCCCCCCCcceeeeceEEeecCCCCccccccccC
Q 006644          282 NFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGR  361 (637)
Q Consensus       282 ~y~~~V~lVk~~t~e~Ll~~I~~~~~~~~~edal~rIkr~l~~~~~~~~dsDdD~EIv~~s~~vsL~CPls~~ri~~P~R  361 (637)
                      .|+++||+|+++|+++|+++|+++ ...+.++++++|++.+.        .|+|.||+++++.|||+||||++||++|+|
T Consensus       160 ~y~l~V~lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~--------~d~DddI~~~~~~vSL~CPlS~~ri~~P~R  230 (360)
T 4fo9_A          160 NYSMSVYLVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLT--------ADPDSEIATTSLRVSLMCPLGKMRLTIPCR  230 (360)
T ss_dssp             CEEEEEEEEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCTTTCSBCSSEEE
T ss_pred             eEEEEEEEEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhc--------cCCccceeeeeeEEeeeCCCccceeccCCc
Confidence            999999999999999999999863 35677889999998874        233446889999999999999999999999


Q ss_pred             CCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHhcCCCCccEEEEccCCceEEeccCC---
Q 006644          362 FKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGE---  438 (637)
Q Consensus       362 g~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e---  438 (637)
                      |..|+|+|||||++||+|+++.++|+||||++.+.+++|+||+||++||+   ++ .++++|+|++||+|++...+.   
T Consensus       231 g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e~~  306 (360)
T 4fo9_A          231 AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKEAM  306 (360)
T ss_dssp             ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC--------
T ss_pred             CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcccc
Confidence            99999999999999999999999999999999999999999999999974   45 489999999999999753332   


Q ss_pred             CCCCccccCCCCCccc
Q 006644          439 NNNLAEWHSPDGSTYA  454 (637)
Q Consensus       439 ~~~~~~w~~p~g~~~~  454 (637)
                      +....+|...||.-.+
T Consensus       307 ~~~~~~~~~~~~~~~~  322 (360)
T 4fo9_A          307 KVSSQPCTKIESSSVL  322 (360)
T ss_dssp             ----------------
T ss_pred             cccCCCCCCccccccc
Confidence            2455577766765544
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Back     alignment and structure
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 637
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 4e-12
d1jeqa151 a.140.2.1 (A:559-609) DNA binding C-terminal domai 2e-07
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 6e-07
d1zrja137 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle 1e-04
d1h1js_44 a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak 2e-04
d1v66a_65 a.140.2.1 (A:) p53 binding domain of protein inhib 5e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 7e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 8e-04
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 0.002
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 0.002
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 0.002
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.8 bits (144), Expect = 4e-12
 Identities = 33/68 (48%), Positives = 42/68 (61%)

Query: 89  EAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFF 148
             ED      K+ C CG SL ++S IQC DPRC V QH+ CVI+P+KPM+    LP  F+
Sbjct: 6   SGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFY 65

Query: 149 CETCRIKR 156
           CE CR+  
Sbjct: 66  CEICRLTS 73
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query637
d1v66a_65 p53 binding domain of protein inhibitor of activat 99.84
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.18
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 97.97
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.44
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 97.39
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.28
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.19
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.05
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 97.03
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 96.94
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.9
d2c2la280 STIP1 homology and U box-containing protein 1, STU 96.75
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 96.4
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 96.38
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 96.37
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 96.18
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 95.85
d1kcfa136 Mitochondrial resolvase ydc2 N-terminal domain {Fi 95.82
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 95.37
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 92.43
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 92.01
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 91.92
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 91.48
d2do1a142 Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId 88.31
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 87.81
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 83.09
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 81.71
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.9e-22  Score=158.05  Aligned_cols=59  Identities=29%  Similarity=0.424  Sum_probs=56.5

Q ss_pred             hHHHHHHHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCchh---HHHHHHHHHHHh
Q 006644            5 LVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKM   63 (637)
Q Consensus         5 ~~~~~k~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~~---v~~kI~elYr~~   63 (637)
                      .+..+++||++|||+|||+||+++|+|||||||||++|||+||+.++   |+.||+|||+++
T Consensus         3 d~~e~~~Mv~sfRVsELQ~LLg~~gr~KsGrK~eL~~RaL~LL~~~~~~~v~~kIrelY~~R   64 (65)
T d1v66a_           3 DSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR   64 (65)
T ss_dssp             CTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence            67899999999999999999999999999999999999999999887   889999999976
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure