Citrus Sinensis ID: 006662
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 636 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPH9 | 633 | Probable methyltransferas | yes | no | 0.984 | 0.988 | 0.699 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.977 | 0.985 | 0.687 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.957 | 0.953 | 0.575 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.948 | 0.952 | 0.579 | 0.0 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.922 | 0.952 | 0.557 | 0.0 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.915 | 0.937 | 0.556 | 0.0 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.812 | 0.846 | 0.531 | 1e-172 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.856 | 0.903 | 0.484 | 1e-156 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.893 | 0.946 | 0.441 | 1e-147 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.795 | 0.843 | 0.447 | 1e-136 |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/633 (69%), Positives = 526/633 (83%), Gaps = 7/633 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+KL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY 536
YRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCEAMSTY
Sbjct: 478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537
Query: 537 PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 596
PRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K+K ITD M+W
Sbjct: 538 PRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQW 597
Query: 597 EGRIADHENGPRQREKILFANKKYWTAPAPDQN 629
EGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 598 EGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/630 (68%), Positives = 510/630 (80%), Gaps = 8/630 (1%)
Query: 10 LSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAK 69
+ I+ +TK ANLY +TLV +LC YL G+WQ++ RAA S PC +
Sbjct: 4 FTRISSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSD---GTPCEGFTRP 60
Query: 70 ASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRER 129
ST +LDF AHH DPPP P C E+ PCED RSLKF R+RL YR+R
Sbjct: 61 NSTK-DLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQR 119
Query: 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFS 189
HCPE+ E+LKCR+PAP+GY PFRWP SR AW+ANVPH ELTVEKKNQNWVR++ DRF
Sbjct: 120 HCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFW 179
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
FPGGGTMFPRGADAYIDDIG+LI+L DGSIRTAIDTGCGVAS+GAYL+SRNI +SFAPR
Sbjct: 180 FPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPR 239
Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRV 309
DTHEAQVQFALERGVPA+IG+MA+IRLPYPSRAFD+AHCSRCLIPWGQ DG YL+EVDRV
Sbjct: 240 DTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRV 299
Query: 310 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 369
LRPGGYWILSGPP+NW+ WKGW RT +DL +EQ IE +ARSLCWKK++Q+ DLAIWQK
Sbjct: 300 LRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQK 359
Query: 370 PTNHVHCIANRRVFKKPRFCKA-QDPDMAWYTKMETCLTPLPEV---SNIKEIAGGQLTK 425
P NH+ C R V K P FC+ QDPDMAWYTKM++CLTPLPEV ++K +AGG++ K
Sbjct: 360 PFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEK 419
Query: 426 WPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNA 485
WP RLNAIPPRVN+GA++ +T E F E+T LWK+RV+YYK +DYQL + GRYRNL+DMNA
Sbjct: 420 WPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNA 479
Query: 486 YLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHA 545
YLGGFAAAL DDP+WVMN VPVEAK+NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IHA
Sbjct: 480 YLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHA 539
Query: 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHEN 605
DS+F+LY+ +CE E++LLEMDRILRP G VIIRDDVD+L+K+K +T G+EWEGRIADHE
Sbjct: 540 DSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEK 599
Query: 606 GPRQREKILFANKKYWTAPAPDQNQGTHTA 635
GP +REKI +A K+YWT PAPD+++ +A
Sbjct: 600 GPHEREKIYYAVKQYWTVPAPDEDKNNTSA 629
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/638 (57%), Positives = 455/638 (71%), Gaps = 29/638 (4%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
S+ + K L I V+ LC + Y+ G WQ + TS S + + C TS
Sbjct: 7 SHSLAEAKRKRLTWILCVSGLCILSYVLGSWQTN----TVPTSSSEAYSRMGCDETSTTT 62
Query: 71 STN----------------------LNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENV 108
+ LDF +HH+ + T V Y PCD E
Sbjct: 63 RAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKL-ELKITNQTVKYFEPCDMSLSEYT 121
Query: 109 PCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPH 168
PCED R +FDR+ + YRERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PH
Sbjct: 122 PCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPH 181
Query: 169 KELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG 228
KEL++EK QNW++ +G+RF FPGGGTMFPRGADAYIDDI +LI L DG+IRTAIDTGCG
Sbjct: 182 KELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCG 241
Query: 229 VASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288
VAS+GAYL+ R+I+A+SFAPRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHC
Sbjct: 242 VASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHC 301
Query: 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 348
SRCLIPW Q DGLYL EVDRVLRPGGYWILSGPP+NW+ +WKGW R+ EDLK EQ+ IE
Sbjct: 302 SRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIED 361
Query: 349 IARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD-PDMAWYTKMETCLT 407
ARSLCWKK+ +K DL+IWQKP NHV C +RV K P C D PD AWY +E+C+T
Sbjct: 362 AARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVT 421
Query: 408 PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSV 467
PLPE ++ E AGG L WP R A+PPR+ G + + AE FRED +WK+R++YYK +
Sbjct: 422 PLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQI 481
Query: 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ 527
+L++ GR+RN++DMNAYLGGFAAA++ P WVMN VPV+A+ TLGVI+ERG IGTYQ
Sbjct: 482 MPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQ 540
Query: 528 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKI 587
+WCE STYPRTYDLIHA +FS+Y++RC++ +LLEMDRILRPEG+V+ RD V++L KI
Sbjct: 541 DWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKI 600
Query: 588 KSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 625
+SIT+GM W+ RI DHE GP EKIL A K YWT P+
Sbjct: 601 QSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/621 (57%), Positives = 458/621 (73%), Gaps = 18/621 (2%)
Query: 16 KTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTS-------- 67
+ + L I V+ LC +FY+ G WQ A T PSSI + + C + S
Sbjct: 13 EARRKKLTLILGVSGLCILFYVLGAWQ-------ANTVPSSI-SKLGCETQSNPSSSSSS 64
Query: 68 AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
+ +S + LDF +H+Q + T + Y PC+ E PCED R +FDR+ + YR
Sbjct: 65 SSSSESAELDFKSHNQI-ELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYR 123
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PHKEL+VEK QNW++ +GDR
Sbjct: 124 ERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDR 183
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFA 247
F FPGGGTMFPRGADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYL+ R+I+AVSFA
Sbjct: 184 FRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFA 243
Query: 248 PRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD 307
PRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHCSRCLIPW + DGLYL+EVD
Sbjct: 244 PRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVD 303
Query: 308 RVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIW 367
RVLRPGGYWILSGPP+NW+ +W+GW RT EDLK EQ+ IE +A+SLCWKK+ +K DL+IW
Sbjct: 304 RVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIW 363
Query: 368 QKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWP 427
QKP NH+ C ++ K P C + + D AWY +ETC+TPLPE +N + AGG L WP
Sbjct: 364 QKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWP 423
Query: 428 ERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYL 487
+R A+PPR+ RG + + AE FRED +WK+R+ +YK + +L+ GR+RN++DMNA+L
Sbjct: 424 DRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFL 482
Query: 488 GGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADS 547
GGFAA+++ P WVMN VPV+A+ TLGVIYERGLIGTYQ+WCE STYPRTYD+IHA
Sbjct: 483 GGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGG 542
Query: 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGP 607
+FSLY+ RC++ +LLEMDRILRPEG+V++RD+V+ L K++ I GM+W+ +I DHE GP
Sbjct: 543 LFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGP 602
Query: 608 RQREKILFANKKYWTAPAPDQ 628
EKIL A K YWT D+
Sbjct: 603 FNPEKILVAVKTYWTGQPSDK 623
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/603 (55%), Positives = 429/603 (71%), Gaps = 16/603 (2%)
Query: 25 ITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNL--NLDFSAHH 82
I +V LC FY+ G WQ S G + S+ T++ A N+ +L+F HH
Sbjct: 18 IFIVFSLCCFFYILGAWQRS-GFGKG--------DSIALEMTNSGADCNIVPSLNFETHH 68
Query: 83 QAPDP---PPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLK 139
A+V PCD +Y + PC+D R++ F RD +IYRERHC + E L
Sbjct: 69 AGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLH 128
Query: 140 CRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPR 199
C +PAP GY PF WP+SR + YAN P+K LTVEK QNW++++GD F FPGGGT FP+
Sbjct: 129 CLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQ 188
Query: 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
GAD YID + +I +++G++RTA+DTGCGVASWGAYL SRN+ A+SFAPRD+HEAQVQFA
Sbjct: 189 GADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFA 248
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
LERGVPA+IGV+ +I+LPYP+RAFDMAHCSRCLIPWG DG+YL+EVDRVLRPGGYWILS
Sbjct: 249 LERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILS 308
Query: 320 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIAN 379
GPP+NW+ ++K W R EDL+ EQ IE A+ LCW+K + ++AIWQK N C +
Sbjct: 309 GPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEAC-RS 367
Query: 380 RRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNR 439
R+ + FCK D D WY KME C+TP PE S+ E+AGG+L +P+RLNA+PPR++
Sbjct: 368 RQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISS 427
Query: 440 GAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499
G++ GVT + + +D WKK V YK ++ L GRYRN++DMNA GGFAAAL L
Sbjct: 428 GSISGVTVDAYEDDNRQWKKHVKAYKRIN-SLLDTGRYRNIMDMNAGFGGFAAALESQKL 486
Query: 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEME 559
WVMN VP A+ N LGV+YERGLIG Y +WCEA STYPRTYDLIHA+ +FSLYK++C +
Sbjct: 487 WVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNAD 546
Query: 560 DVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619
D+LLEMDRILRPEG+VIIRDDVD L+K+K I GM W+ ++ DHE+GP EK+L A K+
Sbjct: 547 DILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQ 606
Query: 620 YWT 622
YW
Sbjct: 607 YWV 609
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/606 (55%), Positives = 424/606 (69%), Gaps = 24/606 (3%)
Query: 24 SITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQ 83
S+ +V LC FYL G WQ S G + + I C+ +LDF HH
Sbjct: 18 SLLVVVGLCCFFYLLGAWQKS-GFGKGDSIAMEITKQAQCTDIVT------DLDFEPHHN 70
Query: 84 A------PDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTEL 137
DP P + PCD K + PC++ R++KF R+ +IYRERHCP E
Sbjct: 71 TVKIPHKADPKPVSFK-----PCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEK 125
Query: 138 LKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMF 197
L+C VPAP GY PF WP+SR + YAN P K LTVEK QNWV+FQG+ F FPGGGTMF
Sbjct: 126 LRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMF 185
Query: 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQ 257
P+GADAYI+++ +I +KDGS+RTA+DTGCGVASWGAY++ RN+L +SFAPRD HEAQVQ
Sbjct: 186 PQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQ 245
Query: 258 FALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWI 317
FALERGVPA+I V+ SI LPYP+RAFDMA CSRCLIPW +G YL+EVDRVLRPGGYW+
Sbjct: 246 FALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGGYWV 305
Query: 318 LSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCI 377
LSGPP+NW++ K WNRT +L +EQ IE IA SLCW+K +K D+AI++K N C
Sbjct: 306 LSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSCD 365
Query: 378 ANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRV 437
+ V CK +D D WY ++ETC+TP P+VSN +E+AGG+L K+PERL A+PP +
Sbjct: 366 RSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSI 421
Query: 438 NRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD 497
++G ++GV E ++ED LWKKRVT YK ++ +L RYRN++DMNA LGGFAAAL
Sbjct: 422 SKGLINGVDEESYQEDINLWKKRVTGYKRIN-RLIGSTRYRNVMDMNAGLGGFAAALESP 480
Query: 498 PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCE 557
WVMN +P K NTL V+YERGLIG Y +WCE STYPRTYD IHA +FSLY+ C+
Sbjct: 481 KSWVMNVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCK 539
Query: 558 MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617
+ED+LLE DRILRPEG VI RD+VD+L ++ I DGM W+ ++ DHE+GP EKIL A
Sbjct: 540 LEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVAT 599
Query: 618 KKYWTA 623
K+YW A
Sbjct: 600 KQYWVA 605
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1562), Expect = e-172, Method: Compositional matrix adjust.
Identities = 278/523 (53%), Positives = 367/523 (70%), Gaps = 6/523 (1%)
Query: 96 YIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE-KTELLKCRVPAPHGYTVPFRW 154
Y P C + +PC D + ++ +R RERHCP+ E +C VP P GY PF W
Sbjct: 90 YFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPW 149
Query: 155 PESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL 214
PESR++AW+ NVP K L KK QNWVR +GDRF FPGGGT FP G Y+D I ++ L
Sbjct: 150 PESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPL 209
Query: 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274
GSIRT +D GCGVAS+GA+L++ IL +S APRD HEAQVQFALERG+PA++GV+++
Sbjct: 210 ASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTY 269
Query: 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR 334
+LPYPSR+FDM HCSRCL+ W YDGLYL+EVDRVLRP GYW+LSGPPV +K R
Sbjct: 270 KLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKR 329
Query: 335 TTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDP 394
+++L+++ + + R LCW+K+ + + IW+KP+NH+ C + K P C + DP
Sbjct: 330 DSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDP 389
Query: 395 DMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDT 454
D AWY +ME C+TPLP+V++ + L WPERLN + PR+ G++ G T F+ DT
Sbjct: 390 DAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHV-PRMKTGSIQGTTIAGFKADT 445
Query: 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTL 514
LW++RV YY + ++ G+YRN++DMNA LGGFAAAL+ P+WVMN VP + K NTL
Sbjct: 446 NLWQRRVLYYDT-KFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTL 504
Query: 515 GVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGS 574
GV+Y+RGLIGTY NWCEA+STYPRTYDLIHA+ +FSLY D+C++ D+LLEM RILRPEG+
Sbjct: 505 GVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGA 564
Query: 575 VIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617
VIIRD D+LVK+K+IT+ M W G + +N IL +
Sbjct: 565 VIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIVD 607
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/559 (48%), Positives = 366/559 (65%), Gaps = 14/559 (2%)
Query: 68 AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
AK T A + P P + P C ++ + PC D R K+ RL +
Sbjct: 47 AKDVTRTTTKAVASPKEPTATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFL 106
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCP E +C +P P GY P RWP+SR+ WY NVP+ + +K NQ+W++ +GD+
Sbjct: 107 ERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDK 166
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSF 246
F FPGGGTMFPRG Y+D + LI +KDG++RTAIDTGCGVASWG L+ R IL++S
Sbjct: 167 FHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSL 226
Query: 247 APRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEV 306
APRD HEAQVQFALERG+PA++G++++ RLP+PS AFDMAHCSRCLIPW ++ G+YL+E+
Sbjct: 227 APRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEI 286
Query: 307 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAI 366
R++RPGG+W+LSGPPVN+ W+GWN T ED KS+ N ++++ S+C+KK QK D+A+
Sbjct: 287 HRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIAV 346
Query: 367 WQKPTNHVHC---IANRRVFKKPRFCKAQDPDMAWYTKMETCLT-PLPEVSNIKEIAGGQ 422
WQK ++ C IA P+ + +PD AWYT + C+ P P+V K+ G
Sbjct: 347 WQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV---KKSGLGS 402
Query: 423 LTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLD 482
+ KWPERL+ P R+ G V G +A + D WK RV +YK V L + RN++D
Sbjct: 403 IPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGT-DKIRNVMD 459
Query: 483 MNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDL 542
MN GGF+AAL++DP+WVMN V + N+L V+++RGLIGTY +WCEA STYPRTYDL
Sbjct: 460 MNTVYGGFSAALIEDPIWVMNVVSSYSA-NSLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 518
Query: 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD 602
+H DS+F+L RCEM+ +LLEMDRILRP G VIIR+ + I ++ G+ W R +
Sbjct: 519 LHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRREE 578
Query: 603 HENGPRQREKILFANKKYW 621
E + EKIL KK W
Sbjct: 579 TEYAVKS-EKILVCQKKLW 596
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1347), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/605 (44%), Positives = 370/605 (61%), Gaps = 37/605 (6%)
Query: 22 LYSITLVTILCTI-FYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSA 80
L L+ +LC + FYL G++ + S + S++L++D S
Sbjct: 18 LPKTVLLILLCGLSFYLGGLYCGK--------------NIIEVSDVAKAESSSLDVDDSL 63
Query: 81 HHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKC 140
+ C Y + PC D + K+ RL + ERHCP + +C
Sbjct: 64 Q----------VKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQC 113
Query: 141 RVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRG 200
VP P GY P RWP+S+ WY NVP+ + +K NQNW+R +G++F FPGGGTMFP G
Sbjct: 114 LVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHG 173
Query: 201 ADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
AY+D + LI +KDG+IRTAIDTGCGVASWG L+ R IL VS APRD HEAQVQFA
Sbjct: 174 VSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFA 233
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
LERG+PA++G++++ RLP+PS +FDMAHCSRCLIPW ++ G+YL+EV R+LRPGG+W+LS
Sbjct: 234 LERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLS 293
Query: 320 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHV--HCI 377
GPPVN+E+ WKGW+ T E+ +S ++ + S+C+K +K D+A+WQK +++ + +
Sbjct: 294 GPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKL 353
Query: 378 ANRRVFKKPRFCKAQDPDMAWYTKMETC-LTPLPEVSNIKEIAGGQLTKWPERLNAIPPR 436
+N P+ + +PD AWYT + C + P P+ +K+ KWPERL+ P R
Sbjct: 354 SNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPK---LKKTDLESTPKWPERLHTTPER 410
Query: 437 VNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD 496
++ V G +F+ D + WK R +YK + + + RN++DMN GG AAALV+
Sbjct: 411 ISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGS-DKIRNVMDMNTAYGGLAAALVN 467
Query: 497 DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRC 556
DPLWVMN V A NTL V+++RGLIGTY +WCEA STYPRTYDL+H D +F+ RC
Sbjct: 468 DPLWVMNVVSSYAA-NTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRC 526
Query: 557 EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFA 616
+M+ V+LEMDRILRP G IIR+ I S+ + W R E+ EK+L
Sbjct: 527 DMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQTESA-SANEKLLIC 585
Query: 617 NKKYW 621
KK W
Sbjct: 586 QKKLW 590
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/534 (44%), Positives = 335/534 (62%), Gaps = 28/534 (5%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C + V ++PCED R+ + R+ YRERHCP E C +P P GY +P WPES
Sbjct: 84 CPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLH 143
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSI 219
W+AN+P+ ++ K +Q W++ +G+ F+FPGGGTMFP GA YI+ + + I L G++
Sbjct: 144 KIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTL 203
Query: 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
RTA+D GCGVAS+G L+S+ ILA+SFAPRD+H++Q+QFALERGVPA + ++ + RLP+P
Sbjct: 204 RTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFP 263
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL 339
+ +FD+ HCSRCLIP+ Y+ Y IEVDR+LRPGGY ++SGPPV W K W
Sbjct: 264 AYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW------- 316
Query: 340 KSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399
++ +AR+LC++ + + IW+KP C+ ++ F ++ P AWY
Sbjct: 317 ----ADLQAVARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWY 371
Query: 400 TKMETCLTPLPEVSNIK-EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWK 458
K++ C+T S++K E A G ++KWPERL +P +R V ++F D W
Sbjct: 372 FKLKRCVT---RPSSVKGEHALGTISKWPERLTKVP---SRAIVMKNGLDVFEADARRWA 425
Query: 459 KRVTYYK-SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI 517
+RV YY+ S++ +L P RN++DMNA+ GGFAA L DP+WVMN +P + TL VI
Sbjct: 426 RRVAYYRDSLNLKLKSP-TVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPL-TLDVI 483
Query: 518 YERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY------KDRCEMEDVLLEMDRILRP 571
Y+RGLIG Y +WCE STYPRTYD IH I SL K RC + D+++EMDRILRP
Sbjct: 484 YDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRP 543
Query: 572 EGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 625
EG V+IRD ++L K+ + + W I + E REKIL A K W P+
Sbjct: 544 EGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 636 | ||||||
| 224130124 | 629 | predicted protein [Populus trichocarpa] | 0.971 | 0.982 | 0.773 | 0.0 | |
| 255541466 | 627 | ATP binding protein, putative [Ricinus c | 0.970 | 0.984 | 0.763 | 0.0 | |
| 224063975 | 622 | predicted protein [Populus trichocarpa] | 0.968 | 0.990 | 0.749 | 0.0 | |
| 449480132 | 635 | PREDICTED: probable methyltransferase PM | 0.979 | 0.981 | 0.728 | 0.0 | |
| 357507093 | 638 | hypothetical protein MTR_7g076170 [Medic | 0.974 | 0.971 | 0.716 | 0.0 | |
| 449432189 | 640 | PREDICTED: probable methyltransferase PM | 0.979 | 0.973 | 0.721 | 0.0 | |
| 297814267 | 633 | dehydration-responsive family protein [A | 0.984 | 0.988 | 0.707 | 0.0 | |
| 353685478 | 634 | putative methyltransferase [Phaseolus vu | 0.952 | 0.955 | 0.724 | 0.0 | |
| 15236921 | 633 | putative methyltransferase PMT15 [Arabid | 0.984 | 0.988 | 0.699 | 0.0 | |
| 356530107 | 622 | PREDICTED: probable methyltransferase PM | 0.933 | 0.954 | 0.722 | 0.0 |
| >gi|224130124|ref|XP_002320758.1| predicted protein [Populus trichocarpa] gi|222861531|gb|EEE99073.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1044 bits (2699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/622 (77%), Positives = 544/622 (87%), Gaps = 4/622 (0%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
SY+ K K NLY I L I CTIFYL G +Q S G + + + SSI PC+
Sbjct: 7 SYLPLKAKKLNLYKIILTIIPCTIFYLVGFYQSSRGNVPVSNTSSSINEVFPCAPPDHNT 66
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
+T LDF AHH APDPP +AR ++PPCDPKY E+ PCED RSLKFDRDRL+YRERH
Sbjct: 67 TT---LDFEAHHFAPDPPLRVARAHHLPPCDPKYSEHTPCEDVERSLKFDRDRLVYRERH 123
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPE E+LKCRVPAP+GY VPFRWPESR+FAWYANVPHKELTVEKKNQNWV +G R F
Sbjct: 124 CPESHEILKCRVPAPYGYKVPFRWPESREFAWYANVPHKELTVEKKNQNWVHVEGKRLRF 183
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNILAVSFAPRD
Sbjct: 184 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILAVSFAPRD 243
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRV 309
TH +QVQFALERGVPALIG++ASIRLPYPSR+FDMAHCSRCLIPWGQY DG YLIEVDR+
Sbjct: 244 THVSQVQFALERGVPALIGIIASIRLPYPSRSFDMAHCSRCLIPWGQYADGQYLIEVDRI 303
Query: 310 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 369
LRPGGYWILSGPP+NWE+HW+GWNRT EDL +EQ+ IE +ARSLCWKKL+Q+KD+AIWQK
Sbjct: 304 LRPGGYWILSGPPINWEAHWEGWNRTREDLGAEQSQIEKVARSLCWKKLVQRKDIAIWQK 363
Query: 370 PTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPER 429
PTNH+HC NR+VFK+P FCK+Q+PDMAWYTKMETCLTPLPEVSNI++IAGGQL KWPER
Sbjct: 364 PTNHIHCKVNRKVFKRPLFCKSQNPDMAWYTKMETCLTPLPEVSNIRDIAGGQLAKWPER 423
Query: 430 LNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG 489
LNAIPPR++RG+++G+TA F E++ LWK+RV YYK +DYQLAQ GRYRNLLDMNA+LGG
Sbjct: 424 LNAIPPRISRGSLEGITAGNFIENSELWKRRVAYYKKIDYQLAQTGRYRNLLDMNAHLGG 483
Query: 490 FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIF 549
FAAALVDDPLWVMN VPV+AK NTLGVI+ERGLIGTYQNWCEAMSTYPRTYD IHADS+F
Sbjct: 484 FAAALVDDPLWVMNVVPVQAKTNTLGVIFERGLIGTYQNWCEAMSTYPRTYDFIHADSVF 543
Query: 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQ 609
SLY+DRC++ED+LLEMDRILRPEGSV++RDDVDIL+K+KSI D M+W+GRIADHE+ P Q
Sbjct: 544 SLYEDRCDVEDILLEMDRILRPEGSVVMRDDVDILMKVKSIIDVMQWDGRIADHESSPHQ 603
Query: 610 REKILFANKKYWTAPAPDQNQG 631
REKILFA KKYWTAP P QNQG
Sbjct: 604 REKILFATKKYWTAPKPGQNQG 625
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541466|ref|XP_002511797.1| ATP binding protein, putative [Ricinus communis] gi|223548977|gb|EEF50466.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/626 (76%), Positives = 538/626 (85%), Gaps = 9/626 (1%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
S++ F+TK ANLY IT+ TILCT+FY G +Q+S G + +TS SSI P
Sbjct: 6 SFLAFRTKKANLYKITVTTILCTVFYFIGFYQNSRGRVPLSTSRSSIFDCAP-------Q 58
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
N LDF HHQ PDPP ARV ++PPCDP+ E PCED RSL+FDRDRL+YRERH
Sbjct: 59 VLNTTLDFDPHHQLPDPPLKAARVLHLPPCDPELSEYTPCEDRQRSLQFDRDRLVYRERH 118
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPEK ELLKCRVPAP GY VPFRWP SR++ W+ANVPHKELTVEKKNQNWVRF+GDRF F
Sbjct: 119 CPEKKELLKCRVPAPFGYRVPFRWPVSREYGWFANVPHKELTVEKKNQNWVRFEGDRFRF 178
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVAS+GAYL+SRNIL +SFAPRD
Sbjct: 179 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASFGAYLLSRNILTMSFAPRD 238
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL 310
THEAQVQFALERGVPALIGV AS+R PYPSRAFDMAHCSRCLIPW YDG YLIEVDR+L
Sbjct: 239 THEAQVQFALERGVPALIGVFASMRQPYPSRAFDMAHCSRCLIPWATYDGQYLIEVDRML 298
Query: 311 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370
RPGGYW+LSGPP+NWE+HWKGW+RT EDL EQ IET+A+SLCWKKL+QK DLAIWQKP
Sbjct: 299 RPGGYWVLSGPPINWENHWKGWSRTPEDLNEEQTSIETVAKSLCWKKLVQKDDLAIWQKP 358
Query: 371 TNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERL 430
TNH+HC ANR+VFK+P FC++QDPD AWYTK+ETCLTPLPEVSNI++IAGGQL WPERL
Sbjct: 359 TNHIHCKANRKVFKQPLFCESQDPDRAWYTKLETCLTPLPEVSNIRDIAGGQLANWPERL 418
Query: 431 NAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGF 490
AIPPR++ G+++G+TAE F E+T LWKKRV +YK+VD+QLA+ GRYRN+LDMNAYLGGF
Sbjct: 419 TAIPPRISSGSLNGITAETFTENTELWKKRVDHYKAVDHQLAEQGRYRNILDMNAYLGGF 478
Query: 491 AAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFS 550
AAALVDDP WVMN VPVE INTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADS+FS
Sbjct: 479 AAALVDDPAWVMNVVPVETDINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSVFS 538
Query: 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQR 610
LYKDRC+MED+LLEMDRILRPEGSVIIRDDVD+L+K+KSI D M+W+ RIADHE P +R
Sbjct: 539 LYKDRCDMEDLLLEMDRILRPEGSVIIRDDVDVLLKVKSIVDVMQWDARIADHERSPHER 598
Query: 611 EKILFANKKYWT--APAPDQNQGTHT 634
EKILFA K+YWT APAP QNQ T
Sbjct: 599 EKILFAVKQYWTAPAPAPHQNQEQST 624
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063975|ref|XP_002301329.1| predicted protein [Populus trichocarpa] gi|222843055|gb|EEE80602.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/619 (74%), Positives = 542/619 (87%), Gaps = 3/619 (0%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
SY+TFK K NLY IT+ ILCT+FYLAG +Q+S G I T+ SS +T+ C+ T+
Sbjct: 7 SYLTFKAKKLNLYKITITIILCTVFYLAGFYQNSRGTISINTTSSSSITAFRCAPTNHST 66
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
+T LDF+A H A DP P +AR + PPCDPKY E PCED RSL+FDRDRL+YRERH
Sbjct: 67 TT---LDFAARHFAQDPKPPVAREHHFPPCDPKYSEYTPCEDVDRSLRFDRDRLVYRERH 123
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPE E+LKCRVP P+GY +PF WPESR+ AWYANVPHK+LTVEKKNQNWVR +G+R F
Sbjct: 124 CPESHEILKCRVPPPYGYKMPFSWPESRELAWYANVPHKDLTVEKKNQNWVRVEGERLRF 183
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNIL VSFAPRD
Sbjct: 184 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILTVSFAPRD 243
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL 310
TH +QVQFALERGVPALIG++ASIRLPYPSR+FDMAHCSRCL+PWGQYDG YLIE+DR+L
Sbjct: 244 THVSQVQFALERGVPALIGIIASIRLPYPSRSFDMAHCSRCLVPWGQYDGQYLIEIDRIL 303
Query: 311 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370
RPGGYWILSGPP+NWE+HWKGWNRT EDL++EQ+ IE +A+SLCW+KL+Q+ D+AIWQKP
Sbjct: 304 RPGGYWILSGPPINWETHWKGWNRTREDLRAEQSQIERVAKSLCWRKLVQRNDIAIWQKP 363
Query: 371 TNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERL 430
TNHVHC NR+VFK+P FCK+Q+PDMAWYTKMETCLTPLPEV++I++IAGGQL KWPERL
Sbjct: 364 TNHVHCKVNRKVFKRPLFCKSQNPDMAWYTKMETCLTPLPEVASIRDIAGGQLAKWPERL 423
Query: 431 NAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGF 490
NAIPPR++ G ++G+ A F E++ LWKKRV YYK +DYQLA+ GRYRNLLDMNA+LGGF
Sbjct: 424 NAIPPRISSGGLEGLAANSFVENSELWKKRVAYYKKIDYQLAKTGRYRNLLDMNAHLGGF 483
Query: 491 AAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFS 550
AAALVDDP+WVMN VPV+AK+NTLGVI++RGLIGTYQNWCEAMSTYPRTYD IHADS+FS
Sbjct: 484 AAALVDDPVWVMNVVPVQAKMNTLGVIFQRGLIGTYQNWCEAMSTYPRTYDFIHADSLFS 543
Query: 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQR 610
LY++RC +ED+LLEMDRILRPEGSVIIRDDVDIL+ +K+I D M+W+GRI DHE+ P +R
Sbjct: 544 LYENRCGVEDILLEMDRILRPEGSVIIRDDVDILLNVKAIMDAMQWDGRITDHESSPHER 603
Query: 611 EKILFANKKYWTAPAPDQN 629
EKILFA KKYWTAP PDQ+
Sbjct: 604 EKILFATKKYWTAPRPDQD 622
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480132|ref|XP_004155808.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/627 (72%), Positives = 529/627 (84%), Gaps = 4/627 (0%)
Query: 13 ITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGA--IRAATSPSSILTSVPCSSTSAKA 70
+FK NLY+ITLV ILC +FYL G+WQ S G I A + + ++V + ++ A
Sbjct: 6 FSFKPGRLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIENSTA 65
Query: 71 STNLNLDFSAHHQAPDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRER 129
+T ++LDF+AHH A D P AR PPCD K E PCED RSLKFDRDRLIYRER
Sbjct: 66 TTVIDLDFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIYRER 125
Query: 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFS 189
HCPE E+LKCRVPAP GY VPFRWPESR FAW++NVPHKELTVEKKNQNWVRF+ DRF
Sbjct: 126 HCPEAGEILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFENDRFR 185
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
FPGGGTMFPRGADAYIDDIGKLINL DGSIRTA+DTGCGVASWGAYL+SRNI+ +SFAPR
Sbjct: 186 FPGGGTMFPRGADAYIDDIGKLINLADGSIRTAVDTGCGVASWGAYLLSRNIVTMSFAPR 245
Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRV 309
DTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPW Q DG+YLIEVDR+
Sbjct: 246 DTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQSDGMYLIEVDRI 305
Query: 310 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 369
LRPGGYW+LSGPP+NWE+HWKGWNRTT DL++EQ+ IE +A+SLCWKKL QK D+AIWQK
Sbjct: 306 LRPGGYWVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQKDDIAIWQK 365
Query: 370 PTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPER 429
PTNH+HC NR+VFK P FC+ QDPD+AWYTKME CLTPLPEVS++KE AGGQL WPER
Sbjct: 366 PTNHIHCKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGGQLLNWPER 425
Query: 430 LNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG 489
L ++PPR++ G++ +T + F E+T LW+KRV +YK++D QLA+PGRYRNLLDMN++LGG
Sbjct: 426 LTSVPPRISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLLDMNSFLGG 485
Query: 490 FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIF 549
FAAA+VDDPLWVMN VPVEA NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IH DS+F
Sbjct: 486 FAAAIVDDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHGDSVF 545
Query: 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQ 609
S+YK RCEMED+LLEMDRILRP+GSVI+RDDVD+LV++KSI + M+WE RIADHE GP Q
Sbjct: 546 SMYKGRCEMEDILLEMDRILRPQGSVILRDDVDVLVEVKSIAEAMQWECRIADHEKGPHQ 605
Query: 610 REKILFANKKYWTAPA-PDQNQGTHTA 635
REKIL A K+YWTA A ++NQ T+
Sbjct: 606 REKILVATKQYWTASATEEENQEKQTS 632
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507093|ref|XP_003623835.1| hypothetical protein MTR_7g076170 [Medicago truncatula] gi|124360854|gb|ABN08826.1| Generic methyltransferase [Medicago truncatula] gi|355498850|gb|AES80053.1| hypothetical protein MTR_7g076170 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/631 (71%), Positives = 530/631 (83%), Gaps = 11/631 (1%)
Query: 11 SYITFKTKHAN-----LYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSS------ILT 59
S+++ K N +Y +T LCT FY G+WQ+SP AA S ++ I
Sbjct: 4 SFLSIFNKKPNKPFSRIYFLTFTIFLCTFFYFLGLWQNSPTTTSAAISGNNHHSTTIIRP 63
Query: 60 SVPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKF 119
P ++ ++ +++ LDFSAHH PDPP T RVT+ P CD E PCEDT RSLKF
Sbjct: 64 DCPPANFTSTTTSSTTLDFSAHHNVPDPPETSERVTHAPVCDVALSEYTPCEDTQRSLKF 123
Query: 120 DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQN 179
R+ LIYRERHCPEK E+L+CR+PAP+GY VP RWPESR +AWYANVPHKELT+EKKNQN
Sbjct: 124 PRENLIYRERHCPEKEEVLRCRIPAPYGYRVPPRWPESRDWAWYANVPHKELTIEKKNQN 183
Query: 180 WVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR 239
WV F+GDRF FPGGGTMFPRGA AYIDDIGKLINLKDGS+RTA+DTGCGVASWGAYL+ R
Sbjct: 184 WVHFEGDRFRFPGGGTMFPRGAGAYIDDIGKLINLKDGSVRTALDTGCGVASWGAYLLPR 243
Query: 240 NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299
+ILAVSFAPRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPWGQ D
Sbjct: 244 DILAVSFAPRDTHEAQVQFALERGVPALIGVIASIRLPYPSRAFDMAHCSRCLIPWGQND 303
Query: 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359
G+YL EVDRVLRPGGYWILSGPP+NWESHWKGW RT EDL +EQ IE +A+SLCWKKL+
Sbjct: 304 GIYLTEVDRVLRPGGYWILSGPPINWESHWKGWERTREDLNAEQTSIERVAKSLCWKKLV 363
Query: 360 QKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIA 419
QK D+AIWQKPTNH+HC R+VFK FC A+DPD AWYTKM+TCLTPLPEV++IKE++
Sbjct: 364 QKGDIAIWQKPTNHIHCKITRKVFKNRPFCDAKDPDSAWYTKMDTCLTPLPEVTDIKEVS 423
Query: 420 GGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRN 479
G L+ WPERL ++PPR++ G++DG+TAEMF+E+T LWKKRV YYK++DYQLA+PGRYRN
Sbjct: 424 GRGLSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYRN 483
Query: 480 LLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRT 539
LLDMNAYLGGFAAA++DDP+WVMN VPVEA+INTLGV+YERGLIGTYQNWCEAMSTYPRT
Sbjct: 484 LLDMNAYLGGFAAAMIDDPVWVMNVVPVEAEINTLGVVYERGLIGTYQNWCEAMSTYPRT 543
Query: 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599
YD IHADS+F+LY+DRC +ED+L+EMDRILRP+GSVI+RDDVD+L+K+K D M+W+ R
Sbjct: 544 YDFIHADSLFTLYEDRCNIEDILVEMDRILRPQGSVILRDDVDVLLKVKRFADAMQWDAR 603
Query: 600 IADHENGPRQREKILFANKKYWTAPAPDQNQ 630
IADHE GP QREKIL A K+YWTAP P+QNQ
Sbjct: 604 IADHEKGPHQREKILVAVKQYWTAPQPEQNQ 634
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432189|ref|XP_004133882.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/632 (72%), Positives = 528/632 (83%), Gaps = 9/632 (1%)
Query: 13 ITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGA--IRAATSPSSILTSVPCSSTSAKA 70
+FK NLY+ITLV ILC +FYL G+WQ S G I A + + ++V + ++ A
Sbjct: 6 FSFKPGRLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIENSTA 65
Query: 71 STNLNLDFSAHHQAPDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRER 129
+T ++LDF+AHH A D P AR PPCD K E PCED RSLKFDRDRLIYRER
Sbjct: 66 TTVIDLDFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIYRER 125
Query: 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFS 189
HCPE E+LKCRVPAP GY VPFRWPESR FAW++NVPHKELTVEKKNQNWVRF+ DRF
Sbjct: 126 HCPEAGEILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFENDRFR 185
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG-----VASWGAYLMSRNILAV 244
FPGGGTMFPRGADAYIDDIGKLINL DGSIRTA+DTG G VASWGAYL+SRNI+ +
Sbjct: 186 FPGGGTMFPRGADAYIDDIGKLINLADGSIRTAVDTGWGGRNGYVASWGAYLLSRNIVTM 245
Query: 245 SFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLI 304
SFAPRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPW Q DG+YLI
Sbjct: 246 SFAPRDTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQSDGMYLI 305
Query: 305 EVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDL 364
EVDR+LRPGGYW+LSGPP+NWE+HWKGWNRTT DL++EQ+ IE +A+SLCWKKL QK D+
Sbjct: 306 EVDRILRPGGYWVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQKDDI 365
Query: 365 AIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLT 424
AIWQKPTNH+HC NR+VFK P FC+ QDPD+AWYTKME CLTPLPEVS++KE AGGQL
Sbjct: 366 AIWQKPTNHIHCKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGGQLL 425
Query: 425 KWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMN 484
WPERL ++PPR++ G++ +T + F E+T LW+KRV +YK++D QLA+PGRYRNLLDMN
Sbjct: 426 NWPERLTSVPPRISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLLDMN 485
Query: 485 AYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIH 544
++LGGFAAA+VDDPLWVMN VPVEA NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IH
Sbjct: 486 SFLGGFAAAIVDDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIH 545
Query: 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHE 604
DS+FS+YK RCEMED+LLEMDRILRP+GSVI+RDDVD+LV++KSI + M+WE RIADHE
Sbjct: 546 GDSVFSMYKGRCEMEDILLEMDRILRPQGSVILRDDVDVLVEVKSIAEAMQWECRIADHE 605
Query: 605 NGPRQREKILFANKKYWTAPA-PDQNQGTHTA 635
GP QREKIL A K+YWTA A ++NQ T+
Sbjct: 606 KGPHQREKILVATKQYWTASATEEENQEKQTS 637
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814267|ref|XP_002875017.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297320854|gb|EFH51276.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/633 (70%), Positives = 528/633 (83%), Gaps = 7/633 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
MAN ++LS ++ + KH NLY + L+ ILC Y G+WQHS G I ++ + LTS
Sbjct: 1 MANYRWPSKLSKLSLRAKHTNLYRVILIAILCAASYFVGVWQHSGGGISRSSLSNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F+A H APDPPPT ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFAASHTAPDPPPTATAARVAQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCP+K E+L+CR+PAP+GYTV FRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPKKHEILRCRIPAPYGYTVSFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINL+DGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLRDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCWKKL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWKKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNH+HC NR ++P FC PD AWYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHIHCKRNRIALRRPPFCHQTLPDQAWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNAVPPRIKSGSLEGITEDDLVSNTETWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY 536
YRNLLDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCE+MSTY
Sbjct: 478 YRNLLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCESMSTY 537
Query: 537 PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 596
PRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K K ITD M+W
Sbjct: 538 PRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKAKKITDAMQW 597
Query: 597 EGRIADHENGPRQREKILFANKKYWTAPAPDQN 629
EGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 598 EGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353685478|gb|AER13155.1| putative methyltransferase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/610 (72%), Positives = 514/610 (84%), Gaps = 4/610 (0%)
Query: 22 LYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCS---STSAKASTNLNLDF 78
LY +T T LCT+FYL G+W HSP ++ A ++ + + C S +N LDF
Sbjct: 23 LYLLTFTTFLCTLFYLLGLWHHSPPSLAAISAATHLAGRRNCPDPISNFLSTISNSTLDF 82
Query: 79 SAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELL 138
S+ H +PDP R + PPCD E PCED +RSLKF R+ LIYRERHCP + E L
Sbjct: 83 SSTHFSPDPEEG-TRAFHAPPCDATLAEYTPCEDVNRSLKFPREDLIYRERHCPVEAEAL 141
Query: 139 KCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFP 198
+CR+PAP GY VP RWPESR AW+ANVPHKELTVEKKNQNWVRF+GDRF FPGGGTMFP
Sbjct: 142 RCRIPAPFGYRVPLRWPESRDAAWFANVPHKELTVEKKNQNWVRFEGDRFRFPGGGTMFP 201
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RGA AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SR+ILAVSFAPRDTHEAQVQF
Sbjct: 202 RGASAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRDILAVSFAPRDTHEAQVQF 261
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318
ALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPWGQ +G+YL EVDRVLRPGGYWIL
Sbjct: 262 ALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWGQNEGIYLTEVDRVLRPGGYWIL 321
Query: 319 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIA 378
SGPP+NWESHWKGW RT E LK EQ+ IE +A+SLCWKKL+QK DLAIWQKPTNH+HC
Sbjct: 322 SGPPINWESHWKGWERTRESLKEEQDTIEKVAKSLCWKKLVQKGDLAIWQKPTNHIHCKI 381
Query: 379 NRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVN 438
RRVFK FC A+DPD AWYTKMETCLTPLPEV+++ E++GG+L+ WPERL ++PPR++
Sbjct: 382 TRRVFKNRPFCAAKDPDTAWYTKMETCLTPLPEVNDVSEVSGGELSNWPERLTSVPPRIS 441
Query: 439 RGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP 498
G+++G+T +MF+E++ LWKKRV YYK++DYQLA+ GRYRNLLDMNAYLGGFAAAL+DDP
Sbjct: 442 SGSLNGITVDMFKENSELWKKRVAYYKTLDYQLAERGRYRNLLDMNAYLGGFAAALIDDP 501
Query: 499 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEM 558
+WVMNTVPVEA++NTLG IYERGLIGTYQNWCEAMSTYPRTYD IH DS+FSLY++RC+M
Sbjct: 502 VWVMNTVPVEAELNTLGAIYERGLIGTYQNWCEAMSTYPRTYDFIHGDSVFSLYQNRCKM 561
Query: 559 EDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618
ED+LLEMDRILRP+GSVI+RDDVD+L+K+K+ D M+W+ RIADHE GP QREKI A K
Sbjct: 562 EDILLEMDRILRPQGSVILRDDVDVLLKVKNFADAMQWDSRIADHEKGPHQREKIFVAVK 621
Query: 619 KYWTAPAPDQ 628
+YWTAP P Q
Sbjct: 622 QYWTAPPPQQ 631
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236921|ref|NP_191984.1| putative methyltransferase PMT15 [Arabidopsis thaliana] gi|75267756|sp|Q9ZPH9.1|PMTF_ARATH RecName: Full=Probable methyltransferase PMT15 gi|4325339|gb|AAD17339.1| F15P23.1 gene product [Arabidopsis thaliana] gi|7267414|emb|CAB80884.1| hypothetical protein [Arabidopsis thaliana] gi|332656529|gb|AEE81929.1| putative methyltransferase PMT15 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/633 (69%), Positives = 526/633 (83%), Gaps = 7/633 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+KL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY 536
YRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCEAMSTY
Sbjct: 478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537
Query: 537 PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 596
PRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K+K ITD M+W
Sbjct: 538 PRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQW 597
Query: 597 EGRIADHENGPRQREKILFANKKYWTAPAPDQN 629
EGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 598 EGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530107|ref|XP_003533625.1| PREDICTED: probable methyltransferase PMT15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/610 (72%), Positives = 518/610 (84%), Gaps = 16/610 (2%)
Query: 22 LYSITLVTILCTIFYLAGMWQHSPGAI---RAATSPSSILTSVPCSSTSAKASTNLNLDF 78
LY ++ T LCTI YL G+W H+P ++ + T+ S+ S+P L+F
Sbjct: 18 LYLLSFTTFLCTITYLLGLWHHAPPSLPSLVSTTAHSNCPNSIP------------TLNF 65
Query: 79 SAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELL 138
SA H +PDP AR Y PPCDP E PCED RSLKF R+ LIYRERHCP ELL
Sbjct: 66 SATHFSPDPQAP-ARDFYAPPCDPSLSEYTPCEDVQRSLKFPRENLIYRERHCPPAEELL 124
Query: 139 KCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFP 198
+CRVPAP GY VP RWPESR AW+ANVPHKELTVEKKNQNWVRF+GD+F FPGGGTMFP
Sbjct: 125 RCRVPAPFGYRVPLRWPESRDAAWFANVPHKELTVEKKNQNWVRFEGDQFRFPGGGTMFP 184
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RGA AYIDDIGKLINL+DGSIRTA+DTGCGVASWGAYL+SR+I+AVSFAPRDTHEAQVQF
Sbjct: 185 RGAGAYIDDIGKLINLEDGSIRTALDTGCGVASWGAYLLSRDIIAVSFAPRDTHEAQVQF 244
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318
ALERGVP LIGV+ASIRLPYPSR+FDMAHCSRCLIPWGQ +G+YL EVDRVLRPGGYWIL
Sbjct: 245 ALERGVPGLIGVLASIRLPYPSRSFDMAHCSRCLIPWGQNEGIYLNEVDRVLRPGGYWIL 304
Query: 319 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIA 378
SGPP+NWE+HWKGW RT E+LK EQ+GIE +A+SLCWKKL+QK DLAIWQKPTNH+HC
Sbjct: 305 SGPPINWENHWKGWERTRENLKEEQDGIEKVAKSLCWKKLVQKGDLAIWQKPTNHIHCKI 364
Query: 379 NRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVN 438
R+V+K FC+A+DPD AWYTKM+TCLTPLPEV++I+E++GG+L+ WPERL ++PPR++
Sbjct: 365 TRKVYKNRPFCEAKDPDTAWYTKMDTCLTPLPEVNDIREVSGGELSNWPERLTSVPPRIS 424
Query: 439 RGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP 498
G++ G+TAEMF+E+ LWKKRV YYK++DYQLA+ GRYRNLLDMNAYLGGFAAAL+DDP
Sbjct: 425 SGSLKGITAEMFKENNELWKKRVAYYKTLDYQLAERGRYRNLLDMNAYLGGFAAALIDDP 484
Query: 499 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEM 558
+WVMNTVPVEA++NTLG IYERGLIGTY NWCEAMSTYPRTYD +H DS+FSLY++RC+M
Sbjct: 485 VWVMNTVPVEAEVNTLGAIYERGLIGTYMNWCEAMSTYPRTYDFMHGDSVFSLYQNRCKM 544
Query: 559 EDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618
ED+LLEMDRILRP+GSVI+RDDVD+L+K+KS TD M+W+ RIADHE GP QREKIL A K
Sbjct: 545 EDILLEMDRILRPQGSVILRDDVDVLLKVKSFTDAMQWDSRIADHEKGPHQREKILVAVK 604
Query: 619 KYWTAPAPDQ 628
+YWTAP+PDQ
Sbjct: 605 QYWTAPSPDQ 614
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 636 | ||||||
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.984 | 0.988 | 0.701 | 4.3e-260 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.973 | 0.980 | 0.690 | 8.7e-253 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.904 | 0.899 | 0.617 | 2.2e-211 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.965 | 0.969 | 0.580 | 5.8e-208 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.921 | 0.951 | 0.558 | 2.8e-192 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.922 | 0.945 | 0.557 | 1.5e-186 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.830 | 0.864 | 0.525 | 9.3e-162 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.877 | 0.925 | 0.478 | 2.7e-148 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.808 | 0.856 | 0.486 | 1.5e-140 | |
| TAIR|locus:2117733 | 600 | QUA3 "QUASIMODO 3" [Arabidopsi | 0.792 | 0.84 | 0.453 | 1.6e-127 |
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2503 (886.2 bits), Expect = 4.3e-260, P = 4.3e-260
Identities = 444/633 (70%), Positives = 528/633 (83%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC T +T + L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPC--TFPHQTTPI-LNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+KL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY 536
YRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNWCEAMSTY
Sbjct: 478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537
Query: 537 PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 596
PRTYD IHADS+FSLYKDRC+MED+LLEMDRILRP+GSVIIRDD+D+L K+K ITD M+W
Sbjct: 538 PRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQW 597
Query: 597 EGRIADHENGPRQREKILFANKKYWTAPAPDQN 629
EGRI DHENGP +REKILF K+YWTAPAPDQ+
Sbjct: 598 EGRIGDHENGPLEREKILFLVKEYWTAPAPDQS 630
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2434 (861.9 bits), Expect = 8.7e-253, P = 8.7e-253
Identities = 433/627 (69%), Positives = 509/627 (81%)
Query: 13 ITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKAST 72
I+ +TK ANLY +TLV +LC YL G+WQ++ RAA S PC + ST
Sbjct: 7 ISSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSD---GTPCEGFTRPNST 63
Query: 73 NLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCP 132
+LDF AHH DPPP P C E+ PCED RSLKF R+RL YR+RHCP
Sbjct: 64 K-DLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCP 122
Query: 133 EKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPG 192
E+ E+LKCR+PAP+GY PFRWP SR AW+ANVPH ELTVEKKNQNWVR++ DRF FPG
Sbjct: 123 EREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPG 182
Query: 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTH 252
GGTMFPRGADAYIDDIG+LI+L DGSIRTAIDTGCGVAS+GAYL+SRNI +SFAPRDTH
Sbjct: 183 GGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTH 242
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312
EAQVQFALERGVPA+IG+MA+IRLPYPSRAFD+AHCSRCLIPWGQ DG YL+EVDRVLRP
Sbjct: 243 EAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRP 302
Query: 313 GGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTN 372
GGYWILSGPP+NW+ WKGW RT +DL +EQ IE +ARSLCWKK++Q+ DLAIWQKP N
Sbjct: 303 GGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFN 362
Query: 373 HVHCIANRRVFKKPRFCKA-QDPDMAWYTKMETCLTPLPEVSN---IKEIAGGQLTKWPE 428
H+ C R V K P FC+ QDPDMAWYTKM++CLTPLPEV + +K +AGG++ KWP
Sbjct: 363 HIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPA 422
Query: 429 RLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLG 488
RLNAIPPRVN+GA++ +T E F E+T LWK+RV+YYK +DYQL + GRYRNL+DMNAYLG
Sbjct: 423 RLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNAYLG 482
Query: 489 GFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSI 548
GFAAAL DDP+WVMN VPVEAK+NTLGVIYERGLIGTYQNWCEAMSTYPRTYD IHADS+
Sbjct: 483 GFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSV 542
Query: 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 608
F+LY+ +CE E++LLEMDRILRP G VIIRDDVD+L+K+K +T G+EWEGRIADHE GP
Sbjct: 543 FTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEKGPH 602
Query: 609 QREKILFANKKYWTAPAPDQNQGTHTA 635
+REKI +A K+YWT PAPD+++ +A
Sbjct: 603 EREKIYYAVKQYWTVPAPDEDKNNTSA 629
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2007 (711.6 bits), Expect = 2.2e-211, Sum P(2) = 2.2e-211
Identities = 357/578 (61%), Positives = 442/578 (76%)
Query: 49 RAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENV 108
RA T+ + S +S+S +S + LDF +HH+ + T V Y PCD E
Sbjct: 63 RAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKL-ELKITNQTVKYFEPCDMSLSEYT 121
Query: 109 PCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPH 168
PCED R +FDR+ + YRERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PH
Sbjct: 122 PCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPH 181
Query: 169 KELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG 228
KEL++EK QNW++ +G+RF FPGGGTMFPRGADAYIDDI +LI L DG+IRTAIDTGCG
Sbjct: 182 KELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCG 241
Query: 229 VASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288
VAS+GAYL+ R+I+A+SFAPRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHC
Sbjct: 242 VASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHC 301
Query: 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 348
SRCLIPW Q DGLYL EVDRVLRPGGYWILSGPP+NW+ +WKGW R+ EDLK EQ+ IE
Sbjct: 302 SRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIED 361
Query: 349 IARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD-PDMAWYTKMETCLT 407
ARSLCWKK+ +K DL+IWQKP NHV C +RV K P C D PD AWY +E+C+T
Sbjct: 362 AARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVT 421
Query: 408 PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSV 467
PLPE ++ E AGG L WP R A+PPR+ G + + AE FRED +WK+R++YYK +
Sbjct: 422 PLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQI 481
Query: 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ 527
+L++ GR+RN++DMNAYLGGFAAA++ P WVMN VPV+A+ TLGVI+ERG IGTYQ
Sbjct: 482 MPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQ 540
Query: 528 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKI 587
+WCE STYPRTYDLIHA +FS+Y++RC++ +LLEMDRILRPEG+V+ RD V++L KI
Sbjct: 541 DWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKI 600
Query: 588 KSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 625
+SIT+GM W+ RI DHE GP EKIL A K YWT P+
Sbjct: 601 QSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2011 (713.0 bits), Expect = 5.8e-208, P = 5.8e-208
Identities = 360/620 (58%), Positives = 462/620 (74%)
Query: 16 KTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILT-SVPCSSTSAKAST-N 73
+ + L I V+ LC +FY+ G WQ + + ++ S T S P SS+S+ +S+ +
Sbjct: 13 EARRKKLTLILGVSGLCILFYVLGAWQAN--TVPSSISKLGCETQSNPSSSSSSSSSSES 70
Query: 74 LNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE 133
LDF +H+Q + T + Y PC+ E PCED R +FDR+ + YRERHCP
Sbjct: 71 AELDFKSHNQI-ELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPV 129
Query: 134 KTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGG 193
K ELL C +P P Y +PF+WP+SR +AWY N+PHKEL+VEK QNW++ +GDRF FPGG
Sbjct: 130 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGG 189
Query: 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHE 253
GTMFPRGADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYL+ R+I+AVSFAPRDTHE
Sbjct: 190 GTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHE 249
Query: 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG 313
AQVQFALERGVPA+IG+M S RLPYP+RAFD+AHCSRCLIPW + DGLYL+EVDRVLRPG
Sbjct: 250 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVDRVLRPG 309
Query: 314 GYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNH 373
GYWILSGPP+NW+ +W+GW RT EDLK EQ+ IE +A+SLCWKK+ +K DL+IWQKP NH
Sbjct: 310 GYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNH 369
Query: 374 VHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAI 433
+ C ++ K P C + + D AWY +ETC+TPLPE +N + AGG L WP+R A+
Sbjct: 370 IECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFAV 429
Query: 434 PPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAA 493
PPR+ RG + + AE FRED +WK+R+ +YK + +L+ GR+RN++DMNA+LGGFAA+
Sbjct: 430 PPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFLGGFAAS 488
Query: 494 LVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 553
++ P WVMN VPV+A+ TLGVIYERGLIGTYQ+WCE STYPRTYD+IHA +FSLY+
Sbjct: 489 MLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLYE 548
Query: 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKI 613
RC++ +LLEMDRILRPEG+V++RD+V+ L K++ I GM+W+ +I DHE GP EKI
Sbjct: 549 HRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKI 608
Query: 614 LFANKKYWTAPAPDQNQGTH 633
L A K YWT D+N +
Sbjct: 609 LVAVKTYWTGQPSDKNNNNN 628
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1863 (660.9 bits), Expect = 2.8e-192, P = 2.8e-192
Identities = 336/602 (55%), Positives = 429/602 (71%)
Query: 25 ITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNL--NLDFSAHH 82
I +V LC FY+ G WQ S G + S+ T++ A N+ +L+F HH
Sbjct: 18 IFIVFSLCCFFYILGAWQRS-GFGKG--------DSIALEMTNSGADCNIVPSLNFETHH 68
Query: 83 QAPDP---PPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLK 139
A+V PCD +Y + PC+D R++ F RD +IYRERHC + E L
Sbjct: 69 AGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLH 128
Query: 140 CRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPR 199
C +PAP GY PF WP+SR + YAN P+K LTVEK QNW++++GD F FPGGGT FP+
Sbjct: 129 CLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQ 188
Query: 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
GAD YID + +I +++G++RTA+DTGCGVASWGAYL SRN+ A+SFAPRD+HEAQVQFA
Sbjct: 189 GADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFA 248
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
LERGVPA+IGV+ +I+LPYP+RAFDMAHCSRCLIPWG DG+YL+EVDRVLRPGGYWILS
Sbjct: 249 LERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILS 308
Query: 320 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIAN 379
GPP+NW+ ++K W R EDL+ EQ IE A+ LCW+K + ++AIWQK N C +
Sbjct: 309 GPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEAC-RS 367
Query: 380 RRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNR 439
R+ + FCK D D WY KME C+TP PE S+ E+AGG+L +P+RLNA+PPR++
Sbjct: 368 RQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISS 427
Query: 440 GAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499
G++ GVT + + +D WKK V YK ++ L GRYRN++DMNA GGFAAAL L
Sbjct: 428 GSISGVTVDAYEDDNRQWKKHVKAYKRIN-SLLDTGRYRNIMDMNAGFGGFAAALESQKL 486
Query: 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEME 559
WVMN VP A+ N LGV+YERGLIG Y +WCEA STYPRTYDLIHA+ +FSLYK++C +
Sbjct: 487 WVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNAD 546
Query: 560 DVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619
D+LLEMDRILRPEG+VIIRDDVD L+K+K I GM W+ ++ DHE+GP EK+L A K+
Sbjct: 547 DILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQ 606
Query: 620 YW 621
YW
Sbjct: 607 YW 608
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1809 (641.9 bits), Expect = 1.5e-186, P = 1.5e-186
Identities = 335/601 (55%), Positives = 422/601 (70%)
Query: 24 SITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQ 83
S+ +V LC FYL G WQ S G + + I C+ +LDF HH
Sbjct: 18 SLLVVVGLCCFFYLLGAWQKS-GFGKGDSIAMEITKQAQCTDIVT------DLDFEPHHN 70
Query: 84 APDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRV 142
P + PCD K + PC++ R++KF R+ +IYRERHCP E L+C V
Sbjct: 71 TVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEKLRCLV 130
Query: 143 PAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGAD 202
PAP GY PF WP+SR + YAN P K LTVEK QNWV+FQG+ F FPGGGTMFP+GAD
Sbjct: 131 PAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMFPQGAD 190
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
AYI+++ +I +KDGS+RTA+DTGCGVASWGAY++ RN+L +SFAPRD HEAQVQFALER
Sbjct: 191 AYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALER 250
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322
GVPA+I V+ SI LPYP+RAFDMA CSRCLIPW +G YL+EVDRVLRPGGYW+LSGPP
Sbjct: 251 GVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGGYWVLSGPP 310
Query: 323 VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRV 382
+NW++ K WNRT +L +EQ IE IA SLCW+K +K D+AI++K N C + V
Sbjct: 311 INWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSCDRSTPV 370
Query: 383 FKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAV 442
CK +D D WY ++ETC+TP P+VSN +E+AGG+L K+PERL A+PP +++G +
Sbjct: 371 DT----CKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLI 426
Query: 443 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVM 502
+GV E ++ED LWKKRVT YK ++ +L RYRN++DMNA LGGFAAAL WVM
Sbjct: 427 NGVDEESYQEDINLWKKRVTGYKRIN-RLIGSTRYRNVMDMNAGLGGFAAALESPKSWVM 485
Query: 503 NTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVL 562
N +P K NTL V+YERGLIG Y +WCE STYPRTYD IHA +FSLY+ C++ED+L
Sbjct: 486 NVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCKLEDIL 544
Query: 563 LEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYWT 622
LE DRILRPEG VI RD+VD+L ++ I DGM W+ ++ DHE+GP EKIL A K+YW
Sbjct: 545 LETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWV 604
Query: 623 A 623
A
Sbjct: 605 A 605
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
Identities = 281/535 (52%), Positives = 374/535 (69%)
Query: 85 PDPPPTLARVT-YIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE-KTELLKCRV 142
P PP + + ++ Y P C + +PC D + ++ +R RERHCP+ E +C V
Sbjct: 78 PPPPSSSSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLV 137
Query: 143 PAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGAD 202
P P GY PF WPESR++AW+ NVP K L KK QNWVR +GDRF FPGGGT FP G
Sbjct: 138 PKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVK 197
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
Y+D I ++ L GSIRT +D GCGVAS+GA+L++ IL +S APRD HEAQVQFALER
Sbjct: 198 DYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALER 257
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322
G+PA++GV+++ +LPYPSR+FDM HCSRCL+ W YDGLYL+EVDRVLRP GYW+LSGPP
Sbjct: 258 GLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPP 317
Query: 323 VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRV 382
V +K R +++L+++ + + R LCW+K+ + + IW+KP+NH+ C +
Sbjct: 318 VASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKA 377
Query: 383 FKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAV 442
K P C + DPD AWY +ME C+TPLP+V++ + L WPERLN +P R+ G++
Sbjct: 378 LKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGSI 433
Query: 443 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVM 502
G T F+ DT LW++RV YY + ++ G+YRN++DMNA LGGFAAAL+ P+WVM
Sbjct: 434 QGTTIAGFKADTNLWQRRVLYYDT-KFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVM 492
Query: 503 NTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVL 562
N VP + K NTLGV+Y+RGLIGTY NWCEA+STYPRTYDLIHA+ +FSLY D+C++ D+L
Sbjct: 493 NVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDIL 552
Query: 563 LEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617
LEM RILRPEG+VIIRD D+LVK+K+IT+ M W G + +N IL +
Sbjct: 553 LEMQRILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIVD 607
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 275/575 (47%), Positives = 370/575 (64%)
Query: 55 SSILTSVPCSSTS---AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCE 111
S L + CS AK T A + P P + P C ++ + PC
Sbjct: 31 SFYLGGIFCSERDKIVAKDVTRTTTKAVASPKEPTATPIQIKSVSFPECGSEFQDYTPCT 90
Query: 112 DTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKEL 171
D R K+ RL + ERHCP E +C +P P GY P RWP+SR+ WY NVP+ +
Sbjct: 91 DPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWI 150
Query: 172 TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVA 230
+K NQ+W++ +GD+F FPGGGTMFPRG Y+D + LI +KDG++RTAIDTGCGVA
Sbjct: 151 NKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVA 210
Query: 231 SWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290
SWG L+ R IL++S APRD HEAQVQFALERG+PA++G++++ RLP+PS AFDMAHCSR
Sbjct: 211 SWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSR 270
Query: 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350
CLIPW ++ G+YL+E+ R++RPGG+W+LSGPPVN+ W+GWN T ED KS+ N ++++
Sbjct: 271 CLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLL 330
Query: 351 RSLCWKKLIQKKDLAIWQKPTNHVHC---IANRRVFKKPRFCKAQDPDMAWYTKMETCLT 407
S+C+KK QK D+A+WQK ++ C IA P+ + +PD AWYT + C+
Sbjct: 331 TSMCFKKYAQKDDIAVWQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVV 389
Query: 408 -PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKS 466
P P+V K+ G + KWPERL+ P R+ G V G +A + D WK RV +YK
Sbjct: 390 APTPKV---KKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKK 444
Query: 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTY 526
V L + RN++DMN GGF+AAL++DP+WVMN V N+L V+++RGLIGTY
Sbjct: 445 VLPALGTD-KIRNVMDMNTVYGGFSAALIEDPIWVMNVVS-SYSANSLPVVFDRGLIGTY 502
Query: 527 QNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVK 586
+WCEA STYPRTYDL+H DS+F+L RCEM+ +LLEMDRILRP G VIIR+ +
Sbjct: 503 HDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDA 562
Query: 587 IKSITDGMEWEGRIADHENGPRQREKILFANKKYW 621
I ++ G+ W R + E + EKIL KK W
Sbjct: 563 ITTLAKGIRWSCRREETEYAVKS-EKILVCQKKLW 596
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
Identities = 256/526 (48%), Positives = 344/526 (65%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C Y + PC D + K+ RL + ERHCP + +C VP P GY P RWP+S+
Sbjct: 73 CSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKD 132
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLI-NLKDGS 218
WY NVP+ + +K NQNW+R +G++F FPGGGTMFP G AY+D + LI +KDG+
Sbjct: 133 ECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGT 192
Query: 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278
IRTAIDTGCGVASWG L+ R IL VS APRD HEAQVQFALERG+PA++G++++ RLP+
Sbjct: 193 IRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPF 252
Query: 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 338
PS +FDMAHCSRCLIPW ++ G+YL+EV R+LRPGG+W+LSGPPVN+E+ WKGW+ T E+
Sbjct: 253 PSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEE 312
Query: 339 LKSEQNGIETIARSLCWKKLIQKKDLAIWQK-PTNHVHC-IANRRVFKKPRFCKAQDPDM 396
+S ++ + S+C+K +K D+A+WQK P N + ++N P+ + +PD
Sbjct: 313 QRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDS 372
Query: 397 AWYTKMETCLT-PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTA 455
AWYT + C+ P P+ +K+ KWPERL+ P R++ V G +F+ D +
Sbjct: 373 AWYTPLRPCVVVPSPK---LKKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDDS 427
Query: 456 LWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 515
WK R +YK + + + RN++DMN GG AAALV+DPLWVMN V A NTL
Sbjct: 428 KWKTRAKHYKKLLPAIGSD-KIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAA-NTLP 485
Query: 516 VIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSV 575
V+++RGLIGTY +WCEA STYPRTYDL+H D +F+ RC+M+ V+LEMDRILRP G
Sbjct: 486 VVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSGYA 545
Query: 576 IIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYW 621
IIR+ I S+ + W R E+ EK+L KK W
Sbjct: 546 IIRESSYFADSIASVAKELRWSCRKEQTESASAN-EKLLICQKKLW 590
|
|
| TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 243/536 (45%), Positives = 339/536 (63%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C + V ++PCED R+ + R+ YRERHCP E C +P P GY +P WPES
Sbjct: 84 CPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLH 143
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSI 219
W+AN+P+ ++ K +Q W++ +G+ F+FPGGGTMFP GA YI+ + + I L G++
Sbjct: 144 KIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTL 203
Query: 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
RTA+D GCGVAS+G L+S+ ILA+SFAPRD+H++Q+QFALERGVPA + ++ + RLP+P
Sbjct: 204 RTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFP 263
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL 339
+ +FD+ HCSRCLIP+ Y+ Y IEVDR+LRPGGY ++SGPPV W K W DL
Sbjct: 264 AYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW----ADL 319
Query: 340 KSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399
++ +AR+LC++ + + IW+KP C+ ++ F ++ P AWY
Sbjct: 320 QA-------VARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWY 371
Query: 400 TKMETCLTPLPEVSNIK-EIAGGQLTKWPERLNAIPPR--VNRGAVDGVTAEMFREDTAL 456
K++ C+T P S++K E A G ++KWPERL +P R V + +D +F D
Sbjct: 372 FKLKRCVTR-P--SSVKGEHALGTISKWPERLTKVPSRAIVMKNGLD-----VFEADARR 423
Query: 457 WKKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 515
W +RV YY+ S++ +L P RN++DMNA+ GGFAA L DP+WVMN +P + TL
Sbjct: 424 WARRVAYYRDSLNLKLKSP-TVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPL-TLD 481
Query: 516 VIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK------DRCEMEDVLLEMDRIL 569
VIY+RGLIG Y +WCE STYPRTYD IH I SL K RC + D+++EMDRIL
Sbjct: 482 VIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRIL 541
Query: 570 RPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKYWTAPA 625
RPEG V+IRD ++L K+ + + W I + E REKIL A K W P+
Sbjct: 542 RPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9ZPH9 | PMTF_ARATH | 2, ., 1, ., 1, ., - | 0.6998 | 0.9842 | 0.9889 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00021435 | hypothetical protein (622 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 636 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 860 bits (2225), Expect = 0.0
Identities = 312/518 (60%), Positives = 380/518 (73%), Gaps = 17/518 (3%)
Query: 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWY 163
+ +PC D R++KF R+R+ +RERHCP E L+C VP P GY P WP+SR WY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 164 ANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRT 221
ANVPH +L EK QNWV+ +GD+F FPGGGT FP GADAYID + ++I G +RT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281
A+D GCGVAS+GAYL+SR++L +SFAP+D HEAQVQFALERGVPA++GV+ + RLPYPSR
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKS 341
+FDMAHCSRCLIPW DG+ L+EVDRVLRPGGY++LSGPPV R EDL+
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQE 232
Query: 342 EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYT 400
E +E +A+SLCWK + +K D+AIWQKP N+ C R KKP CK + DPD AWY
Sbjct: 233 EWKAMEALAKSLCWKLVAKKGDIAIWQKPVNN-SCYNKREPGKKPPLCKDSDDPDAAWYV 291
Query: 401 KMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKR 460
ME C+TPLPEVS+ E+ GG L KWPERL A+PPR+ G + GV+AE F+ DT LWK+R
Sbjct: 292 PMEACITPLPEVSH--EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRR 349
Query: 461 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520
V+ YK + L GR RN++DMNA GGFAAAL+DDP+WVMN VPV +TL VIY+R
Sbjct: 350 VSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYDR 408
Query: 521 GLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580
GLIG Y +WCE STYPRTYDL+HAD +FSLYK RC +ED+LLEMDRILRP G+VIIRDD
Sbjct: 409 GLIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDD 468
Query: 581 VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618
VD+L K+K I M WE RI D E+GP EKIL A K
Sbjct: 469 VDVLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 223 IDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
+D GCG L R + V D + A +R + V + LP+P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKFV-VGDAEDLPFP 54
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGY 315
+FD+ S ++ L E+ RVL+PGG
Sbjct: 55 DESFDVVVSS-LVLHHLPDPERALREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 636 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.97 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.84 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.6 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.53 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.47 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.44 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.44 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.39 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.38 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.38 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.38 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.35 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.33 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.33 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.32 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.31 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.31 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.31 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.3 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.3 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.28 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.27 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.26 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.26 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.25 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.25 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.23 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.2 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.2 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.19 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.19 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.18 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.18 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.17 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.17 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.16 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.16 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.14 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.13 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.12 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.09 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.08 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.08 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.07 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.07 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.07 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.07 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.06 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.06 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.06 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.05 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.04 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.04 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.03 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.03 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.0 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.0 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.0 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.0 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.98 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.98 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.97 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.97 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.96 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.95 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.93 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.93 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.93 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.92 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.91 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.9 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.9 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.89 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.89 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.89 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.88 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.87 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.87 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.86 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.83 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.83 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.81 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.81 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.81 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.8 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.8 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.79 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.78 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.78 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.74 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.74 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.74 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.73 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.73 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.71 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.69 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.69 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.67 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.65 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.65 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.65 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.64 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.64 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.62 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.62 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.61 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.61 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.61 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.6 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.59 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.59 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.59 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.58 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.58 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.57 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.57 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.56 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.56 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.56 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.55 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.55 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.53 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.5 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.49 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.48 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.47 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.47 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.46 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.45 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.44 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.44 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.42 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.41 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.4 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.4 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.39 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.38 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.37 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.37 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.37 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.35 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.35 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.35 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.34 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.34 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.34 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.33 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.32 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.32 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.32 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.3 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.3 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.29 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.29 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.28 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.27 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.26 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.26 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.24 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.24 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.24 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.23 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.22 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.21 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.21 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.2 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.19 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.19 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.19 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.18 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.14 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.14 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.14 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.14 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.13 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.12 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.12 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.11 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.08 | |
| PLN02366 | 308 | spermidine synthase | 98.07 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.07 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.07 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.06 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.06 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.06 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.04 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.99 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 97.99 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.99 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 97.98 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 97.96 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.95 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.95 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.94 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.93 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.91 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.9 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 97.89 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.89 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.88 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.88 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.88 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.87 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.87 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.85 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 97.85 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.85 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.84 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.82 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.82 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.8 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.78 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.78 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.77 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.77 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.77 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.75 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.75 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.75 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.74 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 97.73 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.72 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.7 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.7 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 97.68 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.66 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 97.65 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.65 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.64 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.63 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.63 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.63 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.63 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 97.63 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.63 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.62 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.6 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.59 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.59 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.58 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.58 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.57 | |
| PLN02476 | 278 | O-methyltransferase | 97.57 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.56 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.56 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.55 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.54 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.54 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.54 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.53 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.52 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.52 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.51 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.51 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.48 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 97.43 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.42 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.42 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.41 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.38 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.38 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.38 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.37 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.36 | |
| PLN02823 | 336 | spermine synthase | 97.33 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.33 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.3 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.26 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 97.23 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.22 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.21 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.2 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 97.18 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.18 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 97.18 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.14 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.14 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.13 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.13 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.12 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.09 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.09 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.04 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.03 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.03 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.02 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.02 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.02 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.98 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 96.95 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.93 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.93 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 96.9 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 96.89 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 96.89 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.88 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.86 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.81 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.81 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.74 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.7 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.69 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 96.68 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.68 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.64 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 96.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.63 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.62 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 96.62 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.62 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.6 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 96.54 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.54 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.53 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.52 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.52 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 96.47 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 96.46 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.4 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.39 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 96.38 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.32 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 96.32 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.3 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 96.27 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.26 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 96.26 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.25 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.2 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.14 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.13 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.11 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.06 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 96.04 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.03 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.9 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.87 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 95.79 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.76 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.75 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.74 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 95.74 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.72 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.71 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 95.71 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.71 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 95.58 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.53 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 95.48 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.46 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.44 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.31 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 95.22 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.08 | |
| PLN02366 | 308 | spermidine synthase | 94.99 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 94.97 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.88 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.88 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 94.74 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 94.73 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 94.68 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 94.67 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 94.5 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.48 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 94.42 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 94.29 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.19 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.05 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 94.03 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 93.77 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.53 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 93.5 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.48 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.37 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.37 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 93.31 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 93.27 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.24 | |
| PLN02476 | 278 | O-methyltransferase | 92.81 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 92.81 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 92.58 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 92.54 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.24 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 92.06 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 92.03 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 91.89 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 91.62 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 91.49 | |
| PLN02823 | 336 | spermine synthase | 91.3 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 91.25 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 91.14 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.01 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 90.73 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 90.63 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 90.25 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 90.15 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.06 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 90.04 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.03 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 89.74 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 89.6 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 89.04 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 89.03 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 88.92 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.88 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 88.78 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 88.64 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.61 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 88.61 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.45 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 88.15 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 87.94 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 87.84 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 87.59 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 87.49 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 87.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 87.32 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 86.69 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 86.55 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 86.24 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 86.07 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 86.06 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 85.99 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 85.42 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 85.32 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 84.91 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 84.91 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 84.68 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 84.29 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.2 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 84.02 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 83.74 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 83.59 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 83.49 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 83.41 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 82.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 82.37 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 82.15 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 81.84 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 80.74 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 80.05 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-151 Score=1214.07 Aligned_cols=500 Identities=64% Similarity=1.180 Sum_probs=485.5
Q ss_pred CccccCCchhhccc--ccchhhhhhcCCCCCCCccceecCCCCCCCCCCCCCCccccccccCCCCchhhHHHHhcchhhc
Q 006662 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRF 183 (636)
Q Consensus 106 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~r~~clvp~P~~Y~~P~~wP~Srd~~wy~n~p~~~L~~~k~~q~w~~~ 183 (636)
||+||+|+.++++| +++++++||||||+.+++++||||+|+||+.||+||+|||++||+|+||++|+.+|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH
Q 006662 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 184 ~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e 261 (636)
+|+.+.|||||++|+.|++.|++.|.++++. ..+..|++||||||+|+|+++|++++++++++++.|.+++++|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999987 67788999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHH
Q 006662 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKS 341 (636)
Q Consensus 262 rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~ 341 (636)
||+++.+.++...+|||++++||+|||++|+++|.++.+.+|.|++|+|||||+|++++||.+ +++.+++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999998889999999999999999999999998889999999999999999999999887 366788899
Q ss_pred HHHHHHHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCcc-CCCcCCccccccccccccCccCchhhhhcC
Q 006662 342 EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEVSNIKEIAG 420 (636)
Q Consensus 342 ~~~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~-~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~ 420 (636)
+|++|++++++|||++++++++++|||||.+| +||.+|+..+.|++|+ ++|||++||++|++||+++|++.+ +.++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999998888999999 899999999999999999998754 7889
Q ss_pred CccccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhh-ccCCCCCcceEeeecccchhhhhhhcCCCe
Q 006662 421 GQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDY-QLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499 (636)
Q Consensus 421 ~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v 499 (636)
+++++||+||+++|+||+++++.|+++|.|++|+++|+++|++|+++++ .|++ ++||||||||||+|||||||+++||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~V 388 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPV 388 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999887 5888 9999999999999999999999999
Q ss_pred EEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 500 ~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|||||||+.++ |||++||||||||+||||||+|+|||||||||||+||||.|++||++++||+||||||||||++||||
T Consensus 389 WVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 389 WVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred eEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99999999887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 580 DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 580 ~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
+++++.+|++|+++|+|+++++|+|+||+++||||||||
T Consensus 468 ~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 468 TVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-32 Score=295.60 Aligned_cols=197 Identities=19% Similarity=0.333 Sum_probs=151.4
Q ss_pred ccccccccCccCchhhhhcCCccccCccccccCC------cccccCcccC------cchh--cchhhHHHHHHHHHHHHH
Q 006662 401 KMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIP------PRVNRGAVDG------VTAE--MFREDTALWKKRVTYYKS 466 (636)
Q Consensus 401 ~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p------~~~~~~~~~~------~~~~--~f~~d~~~w~~~v~~y~~ 466 (636)
+...|+.|.|.. ...+.+||+....+. +.|+. ..+ ...+ .|......+++.+.+|..
T Consensus 33 ~~~~CLVp~P~g-------Yk~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid 103 (506)
T PF03141_consen 33 ERLRCLVPPPKG-------YKTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYID 103 (506)
T ss_pred CCCccccCCCcc-------CCCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHH
Confidence 456788887742 356788888775441 11211 001 0011 244445555556666664
Q ss_pred hhh----ccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-Cccc
Q 006662 467 VDY----QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYD 541 (636)
Q Consensus 467 ~~~----~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~D 541 (636)
.+. .+.++|.+|++||+|||+|+|||+|.+++|.+|+++|.+.+++++|+|+|||++.++........+|| ++||
T Consensus 104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred HHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchh
Confidence 332 23456899999999999999999999999999999999999999999999999888877777778888 9999
Q ss_pred eeeeccccccCCCCcCHH------HHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEME------DVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~------~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~~~~~~e~ 605 (636)
|+|| +||.++ .+|+|+|||||||||||++. ..+++++|++++++|||+....
T Consensus 184 mvHc--------src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~---- 251 (506)
T PF03141_consen 184 MVHC--------SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE---- 251 (506)
T ss_pred hhhc--------ccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----
Confidence 9999 777765 79999999999999999973 3568999999999999999884
Q ss_pred CCCCcceEEEEEecCCC
Q 006662 606 GPRQREKILFANKKYWT 622 (636)
Q Consensus 606 ~~~~~~~~l~~~K~~w~ 622 (636)
+..+.|+||+.=.
T Consensus 252 ----~~~~aIwqKp~~~ 264 (506)
T PF03141_consen 252 ----KGDTAIWQKPTNN 264 (506)
T ss_pred ----eCCEEEEeccCCc
Confidence 4459999998744
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=205.28 Aligned_cols=328 Identities=12% Similarity=0.144 Sum_probs=183.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccc--cCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASI--RLPYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~--~Lpf~~ 280 (636)
..+.+.++..++. +|||||||+|.++..|++....++++ |+++.+++.+.+.. .++.+...+.. .+++++
T Consensus 27 ~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~gi---D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGK--SVLELGAGIGRFTGELAKKAGQVIAL---DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCCEEEEE---eCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 3455555444443 89999999999999999987666667 88999998775432 34677777764 467888
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
++||+|+|+.+++|+.++. ..++.++.|+|||||++++............. ......+.. ...+.+++...++....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~-~~~~~~~~~-~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KNNPTHYRE-PRFYTKVFKECHTRDED 179 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc-cCCCCeecC-hHHHHHHHHHheeccCC
Confidence 9999999999997765432 78999999999999999998642211100000 001111111 22344555555554443
Q ss_pred ccc-c-EEEEeCCCCCcccccccccCCCCCCccCCCcCCccccccccccccCccCchhhhhcCCccccCccccccCCccc
Q 006662 360 QKK-D-LAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRV 437 (636)
Q Consensus 360 ~~~-~-~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~ 437 (636)
... . ...+.++.+ -|...+.. ...|..+..=++.. + -..+..+=+|+.-.++.|
T Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~y~~~~i 235 (475)
T PLN02336 180 GNSFELSLVGCKCIG---AYVKNKKN------------QNQICWLWQKVSST-------N--DKGFQRFLDNVQYKSSGI 235 (475)
T ss_pred CCEEEEEEEEeechh---hhhhccCC------------cceEEEEEEeecCC-------c--chhHHHHhhhhccccccH
Confidence 221 1 123333332 12111100 00111111100000 0 001111111211111111
Q ss_pred ccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH
Q 006662 438 NRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI 517 (636)
Q Consensus 438 ~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~ 517 (636)
.. .+.|-...-.+...|..-+.++..+.. .....|||+|||.|+++..|++.. -.+|+.+|.++.++..+
T Consensus 236 ~~-------~~~f~g~~~~v~~~v~~te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A 305 (475)
T PLN02336 236 LR-------YERVFGEGFVSTGGLETTKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFA 305 (475)
T ss_pred HH-------HHHHhCCCCCCCchHHHHHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHH
Confidence 00 011111111111222222333333333 346789999999999999888752 23677778777888888
Q ss_pred Hhhc--c---cchh-hccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 518 YERG--L---IGTY-QNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 518 ~eRg--l---i~~~-~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++- + +... .|+.+ .++| .+||+|.+.+++-... +.+.+|-|+.|+|||||.++|.|
T Consensus 306 ~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 306 LERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 6653 2 1121 13222 2355 7899999987775544 45899999999999999999985
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=149.66 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=92.1
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCCC-----eEEEEeccccCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP-----ALIGVMASIRLPY 278 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~~-----~~~~~~d~~~Lpf 278 (636)
+.+.+.+...+|. +|||||||||.++..+++.. ..++.+ |+|+.|++.|+++... +.+.++|++.|||
T Consensus 41 ~~~i~~~~~~~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~~---D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 41 RALISLLGIKPGD--KVLDVACGTGDMALLLAKSVGTGEVVGL---DISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHhhCCCCCC--EEEEecCCccHHHHHHHHhcCCceEEEE---ECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 3444554444454 99999999999999999984 445555 9999999999987543 7899999999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+|.+++.| +..++.+.+|+|++|||||||.+++...
T Consensus 116 ~D~sFD~vt~~fgl-rnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 116 PDNSFDAVTISFGL-RNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCccCEEEeeehh-hcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 99999999999999 4455999999999999999999998753
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=124.82 Aligned_cols=92 Identities=27% Similarity=0.431 Sum_probs=79.3
Q ss_pred EEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 006662 223 IDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (636)
Q Consensus 223 LDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~ 299 (636)
||+|||+|.++..|+++ +..++.+ |+++++++.++++.. ...+...+...+|+++++||+|++..+++|+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI---DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE---ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999999 7777777 999999999988754 3568889999999999999999999999666 678
Q ss_pred HHHHHHHHhcccCCcEEEE
Q 006662 300 GLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 300 ~~~L~el~RvLKPGG~Lii 318 (636)
..+++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-14 Score=144.75 Aligned_cols=109 Identities=27% Similarity=0.367 Sum_probs=79.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf 278 (636)
.+.+.+...++. +|||+|||||.++..++++ ...++++ |+++.|++.|+++. .++.+.++|++.+|+
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~v---D~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGV---DISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEE---ES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEe---cCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 445555445555 9999999999999999886 2355566 99999999998652 368999999999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+|+|++.+... ++...+++|+.|+|||||.+++...
T Consensus 113 ~d~sfD~v~~~fglrn~-~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNF-PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -TT-EEEEEEES-GGG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhh-CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 99999999999999555 5889999999999999999999753
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-14 Score=141.05 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=109.4
Q ss_pred CCCCchh-hHHHHhcchhhccCCceecCCCCCCCcccHHHHHHHHHHh-hccCCCCCcEEEEeCCCCcHHHHHHhhcCCE
Q 006662 165 NVPHKEL-TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKL-INLKDGSIRTAIDTGCGVASWGAYLMSRNIL 242 (636)
Q Consensus 165 n~p~~~L-~~~k~~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~~l-L~l~~g~~r~VLDIGCGtG~~a~~La~~~v~ 242 (636)
|+++..+ ...+..+.||+..|+.-.. .. +-.....++...... .. -.+.+|||||||-|.++..||+.|..
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~L-H~---~N~~rl~~i~~~~~~~~~---l~g~~vLDvGCGgG~Lse~mAr~Ga~ 83 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPL-HK---INPLRLDYIREVARLRFD---LPGLRVLDVGCGGGILSEPLARLGAS 83 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeee-ee---eccchhhhhhhhhhcccC---CCCCeEEEecCCccHhhHHHHHCCCe
Confidence 4555444 3455678899977754332 11 111122333332221 11 12348999999999999999999988
Q ss_pred EEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEE
Q 006662 243 AVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Lii 318 (636)
++++ |+++..++.|+. .++.+.+....++++....++||+|+|..+++|.. +++.+++.+.+++||||.+++
T Consensus 84 Vtgi---D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~-dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 84 VTGI---DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP-DPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred eEEe---cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC-CHHHHHHHHHHHcCCCcEEEE
Confidence 8888 999999998873 45566677777777776668999999999998875 999999999999999999999
Q ss_pred EeCCCCc
Q 006662 319 SGPPVNW 325 (636)
Q Consensus 319 s~p~~~w 325 (636)
+++..++
T Consensus 160 STinrt~ 166 (243)
T COG2227 160 STINRTL 166 (243)
T ss_pred eccccCH
Confidence 9875443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=139.66 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~ 281 (636)
....+.+.+.++... ..+|||+|||+|.++..+++.+..++.+ |+++.+++.++++.....+..+|...+|++++
T Consensus 28 ~~~a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~~---D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 28 RQSADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERGSQVTAL---DLSPPMLAQARQKDAADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCC
Confidence 334455566654332 3489999999999999999887777777 99999999998876556678889989999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|+++.++ +|..++..++.++.|+|||||.++++.+
T Consensus 103 ~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 103 TFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred cEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999888 7888899999999999999999999976
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=143.69 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=103.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+.+|||||||+|.++..|++.+..++++ |+++.+++.|+++. ..+.+...+.+.+++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GI---D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGV---DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3589999999999999999888777777 89999999887542 25678888888888888899999999999
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeCCCCcccc---------ccCCCCchh-hh--HHHHHHHHHHHHHhceEeecc
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH---------WKGWNRTTE-DL--KSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~---------~~~W~~t~e-~l--~~~~~~ie~la~~l~Wk~v~~ 360 (636)
+|+. ++..+++++.++|||||.++++......... ...|..... .. ....+++..+++..+++.+..
T Consensus 209 eHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 7765 8899999999999999999999764432100 001111110 00 123456778888888877654
Q ss_pred c
Q 006662 361 K 361 (636)
Q Consensus 361 ~ 361 (636)
.
T Consensus 288 ~ 288 (322)
T PLN02396 288 A 288 (322)
T ss_pred e
Confidence 3
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-14 Score=144.35 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lp 277 (636)
.+..+.+.+.+.+.++. +|||||||+|..+..+++. +..++++ |+++.+++.|+++. ..+.+...|....|
T Consensus 38 ~~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 38 IEATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGV---DICEKMVNIAKLRNSDKNKIEFEANDILKKD 112 (263)
T ss_pred hHHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEE---ECCHHHHHHHHHHcCcCCceEEEECCcccCC
Confidence 33456666777666665 8999999999999999875 5566666 88999999988763 24778888888889
Q ss_pred CCCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++..+++|+.. +...+++++.++|||||+|+++.+
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999999888877753 668999999999999999999865
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=138.81 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=88.6
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHcC--------CCeEEEEeccccC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG--------VPALIGVMASIRL 276 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~erg--------~~~~~~~~d~~~L 276 (636)
+.+.+...++. +|||+|||+|.++..++++ + ..++++ |++++|++.|+++. .++.+..++...+
T Consensus 65 ~~~~~~~~~~~--~VLDlGcGtG~~~~~la~~~~~~~~V~gv---D~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 65 AVSWSGAKMGD--RVLDLCCGSGDLAFLLSEKVGSDGKVMGL---DFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 34444444444 9999999999999998875 3 356666 89999999987542 2578888999999
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+++++||+|+++.+++++ +++..+++++.|+|||||++++...
T Consensus 140 p~~~~sfD~V~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCEeEEEEecccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999999555 5889999999999999999999864
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=140.82 Aligned_cols=115 Identities=18% Similarity=0.270 Sum_probs=92.2
Q ss_pred HHHHHHHHhhccC---CCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEec
Q 006662 203 AYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMA 272 (636)
Q Consensus 203 ~~id~L~~lL~l~---~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d 272 (636)
..++.+.+.+.+. ...+.+|||||||+|.++..|+++ +..++++ |+++.+++.++++ +. ++.+.++|
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gv---D~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGI---TLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 3445555555441 123458999999999999999986 6677777 8899998877643 32 57888999
Q ss_pred cccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+|+++++||+|++..+++|+. +...+++++.|+|||||.|++...
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999997765 788999999999999999999864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=126.13 Aligned_cols=145 Identities=22% Similarity=0.423 Sum_probs=101.1
Q ss_pred HHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006662 204 YIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 204 ~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+.++.+ ..++ .+|||||||+|.++..|++.+..++++ |+++.+++. ........+....+.++++
T Consensus 9 ~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~g~---D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 78 (161)
T PF13489_consen 9 YADLLERLLPRLKPG--KRVLDIGCGTGSFLRALAKRGFEVTGV---DISPQMIEK-----RNVVFDNFDAQDPPFPDGS 78 (161)
T ss_dssp HHHHHHHHHTCTTTT--SEEEEESSTTSHHHHHHHHTTSEEEEE---ESSHHHHHH-----TTSEEEEEECHTHHCHSSS
T ss_pred HHHHHHHHhcccCCC--CEEEEEcCCCCHHHHHHHHhCCEEEEE---ECCHHHHhh-----hhhhhhhhhhhhhhccccc
Confidence 4445555554 2333 499999999999999999998877777 888888877 2233443334455567899
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCc--cccccCCC--Cc--hhhhHHHHHHHHHHHHHhceE
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNW--ESHWKGWN--RT--TEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w--~~~~~~W~--~t--~e~l~~~~~~ie~la~~l~Wk 356 (636)
||+|+|+.+++|.. ++..+|+++.++|||||+++++.+.... ......|. .. ........+.+..+++..+++
T Consensus 79 fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 79 FDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp EEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred hhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 99999999996665 7899999999999999999999875421 10000011 11 111223356788899999988
Q ss_pred eec
Q 006662 357 KLI 359 (636)
Q Consensus 357 ~v~ 359 (636)
.+.
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=134.42 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=86.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sF 283 (636)
..+.+.+...++. +|||||||+|.++..|+++ +..++++ |+++.+++.|++++ +.+..+|...++ ++++|
T Consensus 19 ~~ll~~l~~~~~~--~vLDlGcG~G~~~~~l~~~~p~~~v~gv---D~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERAR--RVVDLGCGPGNLTRYLARRWPGAVIEAL---DSSPEMVAAARERG--VDARTGDVRDWK-PKPDT 90 (255)
T ss_pred HHHHHhCCCCCCC--EEEEEcCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCc
Confidence 3455555544444 8999999999999999987 5566677 99999999998765 566677777664 56799
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|+|+.++ ||.+++..+++++.++|||||++++..+
T Consensus 91 D~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAAL-QWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhh-hhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999999 5556889999999999999999999865
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-11 Score=134.32 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=155.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
.+|||+|||+|.++..++.. +..++.+ |+++.+++.|+++ +. .+.+...|... +++.++||+|+|+.-
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~av---Dis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIAT---DISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEE---ECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCC
Confidence 48999999999999998875 4556666 8899999888755 32 35566666432 234568999999643
Q ss_pred cccccc---------------------Ch----HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHH
Q 006662 292 LIPWGQ---------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGI 346 (636)
Q Consensus 292 L~h~~~---------------------d~----~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~i 346 (636)
...... +. ..++.++.++|+|||.+++.... . ..+.+
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-----------~-------q~~~v 277 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-----------K-------QEEAV 277 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-----------c-------hHHHH
Confidence 321110 01 24677888999999999987430 0 12235
Q ss_pred HHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCccCCCcCCccccccccccccCccCchhhhhcCCccccC
Q 006662 347 ETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKW 426 (636)
Q Consensus 347 e~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~w 426 (636)
.+++...+|+.+. ++ |..+. ..|- -.+. ..++... .+ ...|..
T Consensus 278 ~~~~~~~g~~~~~------~~-~D~~g----~~R~-----v~~~------------~~~~~rs-~~----rr~g~~---- 320 (506)
T PRK01544 278 TQIFLDHGYNIES------VY-KDLQG----HSRV-----ILIS------------PINLNRS-YA----RRIGKS---- 320 (506)
T ss_pred HHHHHhcCCCceE------EE-ecCCC----CceE-----EEec------------cccCCcc-ee----ccCCCC----
Confidence 5555555554321 11 12211 0010 0000 0011000 00 000000
Q ss_pred ccccccCCcccccCcccCcchhcchhhH-HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC----CeEE
Q 006662 427 PERLNAIPPRVNRGAVDGVTAEMFREDT-ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD----PLWV 501 (636)
Q Consensus 427 p~rl~~~p~~~~~~~~~~~~~~~f~~d~-~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~----~v~~ 501 (636)
..+.. ..|......|.--...+-. ..-..+||+|||.|.|.+.++.. +++.
T Consensus 321 -----------------------~~~~q~~~~e~~~p~~~i~~eklf~-~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iG 376 (506)
T PRK01544 321 -----------------------LSGVQQNLLDNELPKYLFSKEKLVN-EKRKVFLEIGFGMGEHFINQAKMNPDALFIG 376 (506)
T ss_pred -----------------------CCHHHHHHHHhhhhhhCCCHHHhCC-CCCceEEEECCCchHHHHHHHHhCCCCCEEE
Confidence 00000 0111111111000000112 45789999999999999999865 3444
Q ss_pred EEecCCCCCccchHHHHhhcccchhhccccc----cCCCC-Cccceeeecccccc-------CCCCcCHHHHHHHHhhcc
Q 006662 502 MNTVPVEAKINTLGVIYERGLIGTYQNWCEA----MSTYP-RTYDLIHADSIFSL-------YKDRCEMEDVLLEMDRIL 569 (636)
Q Consensus 502 mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~----~~~yp-~t~Dl~H~~~~fs~-------~~~~c~~~~~l~e~dRiL 569 (636)
+-+-..-.. ..+..+.++||-. +.-.|.. ..-+| .+.|-||. .|.. .+.|=--+..|-++-|+|
T Consensus 377 iE~~~~~~~-~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~L 452 (506)
T PRK01544 377 VEVYLNGVA-NVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKL 452 (506)
T ss_pred EEeeHHHHH-HHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhc
Confidence 433332221 3345556667621 1122322 23356 88999887 5662 233333458999999999
Q ss_pred cCCcEEEE-EeCHHHHHHHHHHHhc
Q 006662 570 RPEGSVII-RDDVDILVKIKSITDG 593 (636)
Q Consensus 570 rPgG~~i~-~d~~~~~~~~~~~~~~ 593 (636)
+|||.+.+ ||..++...+.+.+..
T Consensus 453 k~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 453 KDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 99999888 5777776666555443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=126.47 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=80.6
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRA 282 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+...++ .+|||+|||+|.++.+|++++..++++ |+++.+++.++++ +. ++.+.+.|...++++ ++
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gv---D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAW---DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 3444443343 389999999999999999998777777 8899988877543 33 366677777666664 57
Q ss_pred eeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEE
Q 006662 283 FDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 283 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis 319 (636)
||+|+|+.+++++.. +...++.++.++|||||++++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999855443 2378999999999999997654
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=131.68 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=105.4
Q ss_pred CCCCCCCccceecCCCCCCCCCCCCCCccccccccCCCCchhhHHHHhcchhhccCCceecCCCCCCCcccHHHHHHHHH
Q 006662 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIG 209 (636)
Q Consensus 130 ~C~~~~~r~~clvp~P~~Y~~P~~wP~Srd~~wy~n~p~~~L~~~k~~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~ 209 (636)
.|+.. +|+..+.+||..-++-...+.. +..+..... ++.+.++. .| +|..-.+...+.+.
T Consensus 20 ~C~~~----h~fd~a~~Gy~~ll~~~~~~~~----~~~d~~~~~-~ar~~fl~----------~g-~y~~l~~~i~~~l~ 79 (272)
T PRK11088 20 ICPQN----HQFDCAKEGYVNLLPVQHKRSK----DPGDNKEMM-QARRAFLD----------AG-HYQPLRDAVANLLA 79 (272)
T ss_pred EcCCC----CCCccccCceEEeccccccCCC----CCCcCHHHH-HHHHHHHH----------CC-ChHHHHHHHHHHHH
Confidence 78873 8999999999887652111111 011111111 11222221 11 12222233333344
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-----CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-----v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFD 284 (636)
+.++ ....+|||+|||+|.++..+++.. ..++++ |+++.+++.|.++..++.+.+++...+|+++++||
T Consensus 80 ~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~gi---D~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 80 ERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGL---DISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred HhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEE---CCCHHHHHHHHHhCCCCeEEEeecccCCCcCCcee
Confidence 4332 223479999999999999998752 244556 99999999999888788899999999999999999
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+|++.... ..+.++.|+|||||+|++..|.
T Consensus 154 ~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYAP--------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecCC--------CCHHHHHhhccCCCEEEEEeCC
Confidence 99986531 2468999999999999999773
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=135.64 Aligned_cols=116 Identities=23% Similarity=0.403 Sum_probs=85.1
Q ss_pred CcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEE
Q 006662 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIG 269 (636)
Q Consensus 197 f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~ 269 (636)
+.......++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ .+|++|.+.++++ +. .+.+.
T Consensus 43 Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSSSTEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 4444455566777777788877 9999999999999999999 8888888 8899999988644 44 36777
Q ss_pred EeccccCCCCCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEe
Q 006662 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 270 ~~d~~~Lpf~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..|...++. +||.|++..+++|... +...+++++.++|||||.+++..
T Consensus 118 ~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 118 LQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 777666554 8999999999999863 34899999999999999999864
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=124.20 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=79.9
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCe
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sF 283 (636)
+.+.+....+ .+|||+|||+|.++.++++++..++++ |+++.+++.+++ .+.++.+...+....+++ ++|
T Consensus 22 l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~~V~~i---D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 22 VREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGYDVRAW---DHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 3444443333 389999999999999999998777777 888888887643 355566666666555554 579
Q ss_pred eEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEE
Q 006662 284 DMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 284 DlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis 319 (636)
|+|+++.+++++.. +...+++++.|+|||||++++.
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999998866543 2378999999999999996665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-12 Score=129.72 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~s 282 (636)
.+.+.+.++..++. +|||||||+|.++..++++ +..++++ |+++.+++.|+++..++.+...|...+. ++++
T Consensus 20 ~~~ll~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 20 ARDLLARVPLENPR--YVVDLGCGPGNSTELLVERWPAARITGI---DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHHhhCCCcCCC--EEEEEcccCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHhCCCCeEEECchhccC-CCCC
Confidence 33445555444444 9999999999999999986 4566666 8899999999888767788888876654 4568
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||+|+++.++ ||..+...+++++.++|||||.+++..+
T Consensus 94 fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 94 LDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 9999999998 6666889999999999999999999864
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-12 Score=129.54 Aligned_cols=99 Identities=20% Similarity=0.118 Sum_probs=83.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC-CCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP-YPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~ 291 (636)
..+|||+|||+|.++..|++++..++.+ |+++.+++.|+++ + ..+.+..++...++ +++++||+|++..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~v---D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILC---DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4589999999999999999998777777 9999999988754 2 24577777777664 66789999999999
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ +..++..++.++.++|||||++++...
T Consensus 122 l~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 122 LE-WVADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HH-hhCCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 94 456889999999999999999998754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=137.45 Aligned_cols=111 Identities=23% Similarity=0.431 Sum_probs=90.6
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYP 279 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~ 279 (636)
.+.+.+.+...++ .+|||||||+|.++..|++. +..++++ |+++.+++.|+++. ..+.+...|...++++
T Consensus 255 te~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gv---DiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 255 TKEFVDKLDLKPG--QKVLDVGCGIGGGDFYMAENFDVHVVGI---DLSVNMISFALERAIGRKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHHhcCCCCC--CEEEEEeccCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCC
Confidence 3445555554444 48999999999999999876 6666777 88999999887652 2467888888888888
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|+|..+++|+ .++..++.++.|+|||||.+++..+
T Consensus 330 ~~~fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 330 DNSFDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCCEEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8899999999999666 4889999999999999999999865
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-12 Score=111.68 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=77.8
Q ss_pred cEEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEecc-ccCCCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALERG------VPALIGVMAS-IRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~-~~Lpf~~~sFDlV~~s~ 290 (636)
.+|||||||+|.++.++++ .+..++++ |+++.+++.++++. .++.+...|. ..... .+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGV---DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 4899999999999999999 67887788 88999999887653 4688888888 33333 35699999988
Q ss_pred -cccccc--cChHHHHHHHHhcccCCcEEEEEe
Q 006662 291 -CLIPWG--QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 -~L~h~~--~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++.++. ++...+++++.+.|+|||+|++..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 443333 234789999999999999999975
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=125.38 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=75.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 006662 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d 298 (636)
.+|||||||+|.++..+++. +..++++ |++++|++.|+++. .+.+++...+|+++++||+|+++.++++ .++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gv---D~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~-~~d 125 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVAL---DYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHA-SDN 125 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEE---CCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhc-cCC
Confidence 48999999999999999988 5666677 99999999998763 3467788899999999999999999954 568
Q ss_pred hHHHHHHHHhcccCC
Q 006662 299 DGLYLIEVDRVLRPG 313 (636)
Q Consensus 299 ~~~~L~el~RvLKPG 313 (636)
++.+++|+.|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 899999999999995
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=128.94 Aligned_cols=124 Identities=23% Similarity=0.351 Sum_probs=98.5
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC
Q 006662 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV 264 (636)
Q Consensus 190 F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~ 264 (636)
|+.....+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ ++|++|.+.++++ |.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 44444445556666778888888888888 9999999999999999998 7998888 9999999888753 54
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 265 P--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 265 ~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+ +.+...|...+ .+.||-|++..+++|+.... ..+++.+.++|+|||.+++..-
T Consensus 121 ~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 121 EDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred CcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4 45544444333 34499999999999987544 8999999999999999999753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=122.23 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=139.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
.++|.|+|||+|..+..|+++ +..+.+| |.|.+|++.|+++.+++.|..+|...+. ++..+|+++++.+| ||.
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvl-qWl 105 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVL-QWL 105 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhh-hhc
Confidence 458999999999999999998 5555666 9999999999999999999999887764 56789999999999 999
Q ss_pred cChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecccccEEEEeCCCCCc-c
Q 006662 297 QYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHV-H 375 (636)
Q Consensus 297 ~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~-~ 375 (636)
++-..+|..+...|.|||.|.+..|.. +.. .....+.+.++..-|.......-. -++|+... .
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN-~de-------------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~ 169 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDN-LDE-------------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAA 169 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCc-cCc-------------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHH
Confidence 999999999999999999999998722 111 123346667776666544322112 25555432 3
Q ss_pred cccccccCCCCCCccCCCcCCccccccccccccCccCchhhhhcCCccccCccccccCCcccccCcccCcchhcchhhHH
Q 006662 376 CIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTA 455 (636)
Q Consensus 376 c~~~r~~~~~~~~C~~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~ 455 (636)
+|..+. +--|+-|.=...+|.+|..-- ...+++.|..+.+|=++|. .+
T Consensus 170 Yy~lLa----~~~~rvDiW~T~Y~h~l~~a~------aIvdWvkgTgLrP~L~~L~----------------------e~ 217 (257)
T COG4106 170 YYELLA----PLACRVDIWHTTYYHQLPGAD------AIVDWVKGTGLRPYLDRLD----------------------EE 217 (257)
T ss_pred HHHHhC----cccceeeeeeeeccccCCCcc------chhhheeccccceeccccC----------------------HH
Confidence 444432 335654443455566654432 1234666666777666663 34
Q ss_pred HHHHHHHHHHHhhh
Q 006662 456 LWKKRVTYYKSVDY 469 (636)
Q Consensus 456 ~w~~~v~~y~~~~~ 469 (636)
.|++-+..|..++.
T Consensus 218 ~~~~FL~~Y~~~l~ 231 (257)
T COG4106 218 ERQRFLDRYLALLA 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777888887764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-11 Score=118.70 Aligned_cols=114 Identities=29% Similarity=0.399 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
..+.+.+.+.+...++. +|||+|||+|.++..+++.. ..++++ |+++.+++.++++ ...+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~---d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGI---DRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEE---eCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34555666666666555 99999999999999998763 355566 8888988888765 345778888888
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++++||+|++..+++++ .++..+++++.++|||||++++..+
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 888888999999999999665 4889999999999999999999876
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=122.84 Aligned_cols=112 Identities=22% Similarity=0.309 Sum_probs=89.3
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~ 275 (636)
..+.+.+.+...++. +|||+|||+|.++..+++. +..++++ |+++.+++.++++. ..+.+...|...
T Consensus 33 ~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 33 WRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGL---DFSENMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCceEEEEechhc
Confidence 335566666655555 9999999999999999875 2456666 88889988876542 246778888888
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++++||+|++..++ ++.++...+++++.++|+|||++++..+
T Consensus 108 ~~~~~~~fD~V~~~~~l-~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGL-RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCCccEEEEeccc-ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 88888999999999888 5556888999999999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=128.32 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lp 277 (636)
+...+.+.+.+.+. ....+|||||||+|.++..+++. +..++.+ |.++.+++.|+++. .++.+..+|...++
T Consensus 98 e~~r~~~l~~~~l~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgV---D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLS-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccC-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHhhhccCCeEEeccHHhCC
Confidence 33444444444332 22348999999999999888775 3445555 88999999887653 35677888888899
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCC--Ccccccc--CCCCchhhhHHHHHHHHHHHHHh
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV--NWESHWK--GWNRTTEDLKSEQNGIETIARSL 353 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~--~w~~~~~--~W~~t~e~l~~~~~~ie~la~~l 353 (636)
+++++||+|+++.+++++. ++..+++++.|+|||||.+++.++.. .|..... .|. .....+++.++++..
T Consensus 174 ~~~~sFDvVIs~~~L~~~~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~-----~~~t~eEl~~lL~~a 247 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM-----LFPKEEEYIEWFTKA 247 (340)
T ss_pred CCCCceeEEEEcChhhhCC-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc-----cCCCHHHHHHHHHHC
Confidence 9999999999999996654 78899999999999999999876421 1211110 010 011235567788888
Q ss_pred ceEeec
Q 006662 354 CWKKLI 359 (636)
Q Consensus 354 ~Wk~v~ 359 (636)
+|+.+.
T Consensus 248 GF~~V~ 253 (340)
T PLN02490 248 GFKDVK 253 (340)
T ss_pred CCeEEE
Confidence 888765
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=120.60 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=83.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
..+|||+|||+|.++..+++.+ ..++.+ |+++.+++.++++.. ++.+...|...+++++++||+|+++.++ |+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~ 110 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIAL---DISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QW 110 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEE---eChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hh
Confidence 3589999999999999999874 333455 889999988876643 4677888888888888999999999998 56
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..++..++.++.++|+|||.+++..+
T Consensus 111 ~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 111 CDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 66889999999999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.5e-11 Score=124.47 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=81.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHH---HHc---CCCeEEEEeccccCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFA---LER---GVPALIGVMASIRLPY 278 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A---~er---g~~~~~~~~d~~~Lpf 278 (636)
+.+...+....+ ++|||||||+|.++..++..+. .++++ |.++.++..+ ++. ...+.+..++...+|.
T Consensus 111 ~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~~v~Gi---DpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 111 DRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAKSLVGI---DPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 344444443344 4999999999999999988865 46777 7777666543 221 2345667777777875
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. .+||+|+|+.+++|+ .++..+|++++|+|||||.|++...
T Consensus 186 ~-~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 L-YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred C-CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4 489999999999776 5889999999999999999999753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-11 Score=126.82 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=84.4
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHH--Hc----CCCeEEEEeccccCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFAL--ER----GVPALIGVMASIRLP 277 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~--er----g~~~~~~~~d~~~Lp 277 (636)
.+.+...++...+ ++|||||||+|.++..+++.+. .++++ |.++.++..++ ++ ..++.+..++...+|
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~~V~Gi---D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAKLVVGI---DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 3445555543333 4999999999999999998864 46677 77776664322 11 235788888888898
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ +++||+|+|..+++|. .++..+++++.++|+|||.|++..
T Consensus 186 ~-~~~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 7889999999999665 588999999999999999999974
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-12 Score=110.86 Aligned_cols=90 Identities=26% Similarity=0.391 Sum_probs=73.5
Q ss_pred EEEeCCCCcHHHHHHhhcC-----CEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEeccc-
Q 006662 222 AIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRC- 291 (636)
Q Consensus 222 VLDIGCGtG~~a~~La~~~-----v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~- 291 (636)
|||+|||+|..+..+++.. ..++++ |+++++++.++++. .++.+.+.|...+++.+++||+|+|+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gv---D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGV---DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEE---ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEE---ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999873 566666 99999999998664 6889999999999988899999999655
Q ss_pred ccccccCh-HHHHHHHHhcccCCc
Q 006662 292 LIPWGQYD-GLYLIEVDRVLRPGG 314 (636)
Q Consensus 292 L~h~~~d~-~~~L~el~RvLKPGG 314 (636)
++|+.++. ..+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 76655333 789999999999998
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-11 Score=125.16 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=77.4
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
+|||+|||+|.++.+|++++..++++ |+++.+++.+++ .+.++.+...|....++ +++||+|+++.++++..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~av---D~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAV---DINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 79999999999999999998877777 889988887653 35567777777665555 67899999999886554
Q ss_pred c-ChHHHHHHHHhcccCCcEEEEEe
Q 006662 297 Q-YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 297 ~-d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. +...+++++.++|+|||++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 23789999999999999977754
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-11 Score=117.22 Aligned_cols=143 Identities=24% Similarity=0.330 Sum_probs=108.0
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFD 284 (636)
+.|++++ .+++ +|||+|||.|.+..+|.+ +++.+.++ +++++.+..+.++|+++.-..++..-..|++++||
T Consensus 5 ~~I~~~I--~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 5 QIIAEWI--EPGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred HHHHHHc--CCCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCcc
Confidence 3456655 4566 999999999999999988 48888888 99999999999999876655444432349999999
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCC-Ccccc---------------ccCCCCchhhhHHHHHHHHH
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV-NWESH---------------WKGWNRTTEDLKSEQNGIET 348 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~-~w~~~---------------~~~W~~t~e~l~~~~~~ie~ 348 (636)
.|+.+.+|.+. .+|+.+|.|+.|+ |...+++-|+. .|..+ ...|-+|+.-..-....+++
T Consensus 78 ~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 78 YVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED 153 (193)
T ss_pred EEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH
Confidence 99999999665 4889999999766 66888887644 33211 12366666655556778899
Q ss_pred HHHHhceEeec
Q 006662 349 IARSLCWKKLI 359 (636)
Q Consensus 349 la~~l~Wk~v~ 359 (636)
+++..+++.+.
T Consensus 154 lc~~~~i~I~~ 164 (193)
T PF07021_consen 154 LCRELGIRIEE 164 (193)
T ss_pred HHHHCCCEEEE
Confidence 99988887654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-11 Score=112.99 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=82.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC--CCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP--YPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp--f~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..|+++ +..++++ |+++.+++.|+++ +. ++.+.+.|...++ ++ +.||+|++.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 48999999999999999943 5667777 9999999998763 44 5899999998887 66 899999999
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++ ++..++..+++++.++|++||.+++..+
T Consensus 81 ~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GVL-HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp STG-GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cch-hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 988 5555778999999999999999999966
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.1e-11 Score=120.50 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=78.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG----V--PALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||||||+|..+..+++. +..++++ |+++.|++.|+++. . .+.+...+...+|++ .+|+|+++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gv---D~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAI---DNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 48999999999999888762 4566677 89999999987652 2 577888888777765 49999999
Q ss_pred ccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++.++. ..+++++.++|||||.|+++..
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9996654332 6899999999999999999863
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=117.89 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=84.7
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc--C------CEEEEcCcCCchHHHHHHHHHcC--------CCeEEEEeccccCCC
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR--N------ILAVSFAPRDTHEAQVQFALERG--------VPALIGVMASIRLPY 278 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--~------v~vv~i~p~Dis~a~l~~A~erg--------~~~~~~~~d~~~Lpf 278 (636)
.++...++||++||||.++..+.+. . -.++-. |+++.|+..+++|. ..+.+..+|++.|||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~---Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL---DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE---eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence 3444569999999999999988875 1 233333 88889988877653 127788899999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+....+.+..++ ++++.|+|++|+|||||+|.+...
T Consensus 174 dd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 999999999999997776 899999999999999999998765
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=118.58 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc------CCCeEEEEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er------g~~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ ..++.+..+|...++++ .+|+|+++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gv---D~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGI---DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 48999999999999998874 4556666 8899999888754 23467888888888765 48999999
Q ss_pred cccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++.+ +...+++++.|+|+|||.|+++.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99966543 237899999999999999999965
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=115.34 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=79.2
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||||||+|.++..|++. +..++++ |+++.+++.|+++...+.+..++... |+++++||+|+++.+++|+.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~gi---DiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGV---EINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 48999999999999999886 5566666 99999999998876667777778766 888999999999999988754
Q ss_pred Ch-HHHHHHHHhcccCCcEEEEEe
Q 006662 298 YD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 298 d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+. ..+++++.|++ ++++++..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 33 78999999998 56888765
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=119.32 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=119.2
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhc--cCC-CCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCe
Q 006662 190 FPGGGTMFPRGADAYIDDIGKLIN--LKD-GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPA 266 (636)
Q Consensus 190 F~ggg~~f~~g~~~~id~L~~lL~--l~~-g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~ 266 (636)
+.|.|.||--+.+.+.+.+. .-. ..+ ....++||||+|.|..+..|+..--.+... +.|..|...-.++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~-~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT---E~S~~Mr~rL~~kg~~- 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLR-ISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYAT---EASPPMRWRLSKKGFT- 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhh-hhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEee---cCCHHHHHHHHhCCCe-
Confidence 66788887666655443332 111 111 134589999999999999998874333333 7788998888888843
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe--CCCCcccccc-CCCCchhhhHHHH
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG--PPVNWESHWK-GWNRTTEDLKSEQ 343 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~--p~~~w~~~~~-~W~~t~e~l~~~~ 343 (636)
+.+..++.-.+..||+|.|.++| .-..+|..+|+++++.|+|+|.++++. |-..|.+... .|+++.+.+...-
T Consensus 139 ---vl~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g 214 (265)
T PF05219_consen 139 ---VLDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKG 214 (265)
T ss_pred ---EEehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCC
Confidence 33343444345689999999999 555689999999999999999999974 5444555433 3666666655444
Q ss_pred HHHHHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCccCCCcCCccc
Q 006662 344 NGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399 (636)
Q Consensus 344 ~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy 399 (636)
..+|+.+.++- +++.. ...+..-+ .+.|++|++|-..+.++
T Consensus 215 ~~~E~~v~~l~-~v~~p---------~GF~v~~~-----tr~PYLcEGD~~~~~Y~ 255 (265)
T PF05219_consen 215 ATFEEQVSSLV-NVFEP---------AGFEVERW-----TRLPYLCEGDLYQSYYV 255 (265)
T ss_pred CcHHHHHHHHH-HHHHh---------cCCEEEEE-----eccCccccCcccCceEE
Confidence 44555555553 22211 11111222 33599999776555443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=113.40 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=79.5
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCCCCCCCe
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lpf~~~sF 283 (636)
+.+.++..++ .++||+|||.|+.+.+|+++|..++.+ |.++..++. |.++++++.....|.....++ +.|
T Consensus 22 v~~a~~~~~~--g~~LDlgcG~GRNalyLA~~G~~VtAv---D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLLKP--GKALDLGCGEGRNALYLASQGFDVTAV---DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-S--SEEEEES-TTSHHHHHHHHTT-EEEEE---ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhcCC--CcEEEcCCCCcHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCc
Confidence 4444443333 389999999999999999999988888 777766654 446688888888888777775 679
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++..++++...+. ..++..|...++|||++++..
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9999988886665444 689999999999999999864
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-10 Score=115.05 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=78.3
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+|||||||+|.++..+++. +..++++ |+++.+++.++++ +. .+.+...|....|++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gi---d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGY---TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 7999999999999999886 3556666 8899998888754 22 357777777666665 589999999999
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|. .+...+++++.++|||||++++..+
T Consensus 78 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHI-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhC-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 666 4788999999999999999999875
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=118.40 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=82.2
Q ss_pred cCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCCCCCeeE
Q 006662 214 LKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRAFDM 285 (636)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~~~sFDl 285 (636)
+.++. +|||||||+|..+..+++. + ..++.+ |+++.+++.|+++ + .++.+...+...+++++++||+
T Consensus 75 ~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~gv---D~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIGV---DMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEE---CCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence 34555 9999999999888776654 2 345566 8899999988764 2 2567788888889998899999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+++.++ ++..+...+++++.|+|||||+|++++.
T Consensus 150 Vi~~~v~-~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCVI-NLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEcCcc-cCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998888 5555778999999999999999999864
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-11 Score=119.16 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=94.7
Q ss_pred hcchhhccCCceecCCCCCCCcccHHHHHHHHHHhhcc-CCC----CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCc
Q 006662 177 NQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDG----SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDT 251 (636)
Q Consensus 177 ~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l-~~g----~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Di 251 (636)
...||+.+|-+-.++.-. ........+.+....+. .++ .+++|||+|||.|.++..|++.+..++++ |+
T Consensus 46 a~~wwd~~g~~~~Lh~mn---~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GI---D~ 119 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSMN---QTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGI---DA 119 (282)
T ss_pred cccccccccchhhhhhcc---chhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEee---cc
Confidence 457888877655443322 12223333444444322 233 14689999999999999999999988888 99
Q ss_pred hHHHHHHHHHcCC--C---------eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 252 HEAQVQFALERGV--P---------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 252 s~a~l~~A~erg~--~---------~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++.+++.|++... | +.+...+.+.+ .+.||+|+|+.+++|.. ++..++..+.++|||||.+++++
T Consensus 120 s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~-dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 120 SDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVK-DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred cHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHh-CHHHHHHHHHHHhCCCCceEeee
Confidence 9999999986521 1 11222222222 34599999999998875 89999999999999999999996
Q ss_pred C
Q 006662 321 P 321 (636)
Q Consensus 321 p 321 (636)
-
T Consensus 196 i 196 (282)
T KOG1270|consen 196 I 196 (282)
T ss_pred h
Confidence 4
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=114.75 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=79.7
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH-HcC----------------CCeEEEEeccccCCCC-CC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERG----------------VPALIGVMASIRLPYP-SR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~-erg----------------~~~~~~~~d~~~Lpf~-~~ 281 (636)
.+|||+|||.|..+.+|+++|..++++ |+|+.+++.+. +.+ ..+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gv---D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGV---ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEE---eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 389999999999999999999988888 99999988753 222 3467778888777643 45
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
.||.|+...+++|+.++. ..++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 799999988888886555 679999999999999866654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=123.57 Aligned_cols=112 Identities=26% Similarity=0.377 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+.+.++. +|||||||+|.++..++++ +..++++ |+++++++.|+++. ..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~gi---DlS~~~l~~A~~~~~~l~v~~~~~D~~~l-- 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGV---TISAEQQKLAQERCAGLPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHhccCeEEEEECchhhc--
Confidence 33445566666666665 9999999999999999986 6777777 99999999998764 3455555555443
Q ss_pred CCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|++..+++|... +...+++++.++|||||++++...
T Consensus 226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 478999999998877643 337899999999999999999854
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=108.39 Aligned_cols=111 Identities=22% Similarity=0.231 Sum_probs=86.3
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcC------CCeEEEEecccc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIR 275 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~~ 275 (636)
...+...+...++ .+|||+|||+|.++..+++.. ..++.+ |+++.+++.++++. .++.+...+...
T Consensus 40 ~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 40 RRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGL---DFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEE---eCCHHHHHHHHHhhcccccccCeEEEeccccc
Confidence 3344444444433 489999999999999998874 555566 88888888887652 346777788878
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++.++||+|+++.+++++ .++..++.++.++|+|||.+++...
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCCCccEEEEecccccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 88777899999999988554 5788999999999999999998753
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=107.70 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=86.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
+.+|||+|||+|..+..++.+ +..++++ |.++.+++.|+++ +. ++.+...+...++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~gi---D~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLV---DSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEE---eCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 348999999999999988864 4566666 8888888777543 33 47888888877776 67999999864
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+ .+...++.++.++|||||++++..+.. ....++++++.++|....
T Consensus 121 ~----~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 121 V----ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred c----cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEee
Confidence 2 355789999999999999999986521 123467788888997543
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-10 Score=112.11 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEecc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V--PALIGVMAS 273 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~ 273 (636)
+.+...+.+.+.++.......+|||+|||+|.++..+++.+..++++ |+++.+++.|+++. . ++.+.+.+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAV---DISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34455556666665212234599999999999999999987777677 89999998887652 1 567777777
Q ss_pred ccCCCCCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeCCCCccccc----cCCCC---chhhhHHHHHH
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNR---TTEDLKSEQNG 345 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~----~~W~~---t~e~l~~~~~~ 345 (636)
..++ ++||+|++..+++|+.. +...++.++.+++++++++.+... ..+.... ..|.. .........++
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK-TAWLAFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC-chHHHHHHHHHhhCcCcccccceEEecHHH
Confidence 6665 78999999998877753 337889999999997776665422 1111000 00111 01111123456
Q ss_pred HHHHHHHhceEeecc
Q 006662 346 IETIARSLCWKKLIQ 360 (636)
Q Consensus 346 ie~la~~l~Wk~v~~ 360 (636)
++++++..+|+.+..
T Consensus 190 ~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 190 LERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHHcCceeeee
Confidence 888888888887654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=114.32 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCC--
Q 006662 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVP-- 265 (636)
Q Consensus 193 gg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~-- 265 (636)
.+..|..|.+.......+++........+|||+|||+|.++..+++.+. .++++ |+++.+++.|+++ +..
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~av---Did~~al~~a~~n~~~n~~~~~ 210 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGI---DIDPLAVESARKNAELNQVSDR 210 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHHcCCCcc
Confidence 3444555555555544444432222235999999999999999888754 45555 8888888888754 222
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+...+ ..+...++||+|+++... + ....++.++.++|||||++++++.
T Consensus 211 ~~~~~~~--~~~~~~~~fDlVvan~~~-~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 211 LQVKLIY--LEQPIEGKADVIVANILA-E---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred eEEEecc--cccccCCCceEEEEecCH-H---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2222222 233456789999997643 1 225789999999999999999975
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=110.72 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=95.2
Q ss_pred hHHHHhcchhhccCCceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCc
Q 006662 172 TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDT 251 (636)
Q Consensus 172 ~~~k~~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Di 251 (636)
..++..+.||+..++.-.+ ..-....++.+...+...+ ..+|||||||+|.++..+++.+..++.+ |+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~i---D~ 78 (233)
T PRK05134 11 KFSALAARWWDPNGEFKPL-------HRINPLRLNYIREHAGGLF--GKRVLDVGCGGGILSESMARLGADVTGI---DA 78 (233)
T ss_pred HHHHHHHHHhccCCCcHHH-------HHhhHHHHHHHHHhccCCC--CCeEEEeCCCCCHHHHHHHHcCCeEEEE---cC
Confidence 3445566677665432222 1112223344444443233 3489999999999999999887766666 88
Q ss_pred hHHHHHHHHHc----CCCeEEEEeccccCC-CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 252 HEAQVQFALER----GVPALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 252 s~a~l~~A~er----g~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
++.+++.+.++ +..+.+...+....+ ..++.||+|+++.++.+. .++..++.++.++|+|||.++++.+.
T Consensus 79 s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 79 SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV-PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc-CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 88888877654 344566666655554 345789999999988555 47889999999999999999998653
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=102.77 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE--EEEcCcCCchHHHHHHHHHc----CCC-eEEEEe
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALER----GVP-ALIGVM 271 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~--vv~i~p~Dis~a~l~~A~er----g~~-~~~~~~ 271 (636)
.+.+.-...|.+.+...... +|||+|||+|.++..++++... ++.+ |+++.+++.++++ +.. +.+...
T Consensus 14 ~~~d~~t~lL~~~l~~~~~~--~vLDlG~G~G~i~~~la~~~~~~~v~~v---Di~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHKGG--RVLDLGCGSGVISLALAKRGPDAKVTAV---DINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp TSHHHHHHHHHHHHHHHTTC--EEEEETSTTSHHHHHHHHTSTCEEEEEE---ESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred CCCCHHHHHHHHHHhhccCC--eEEEecCChHHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHHHHhcCccccccccc
Confidence 44555556677776654444 8999999999999999998443 4455 8899998888643 444 666666
Q ss_pred ccccCCCCCCCeeEEEecccccccccC----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 272 ASIRLPYPSRAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 272 d~~~Lpf~~~sFDlV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
|... +.++++||+|+|+.-++.-..+ ...++.+..+.|+|||.|++...
T Consensus 89 d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 89 DLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp STTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 6533 3447899999999866322221 26789999999999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-10 Score=126.55 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=80.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC--CCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP--YPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp--f~~~sFDlV~~s~~ 291 (636)
.+|||||||+|.++..+++. +..++++ |+++.+++.|+++ +.++.+..+|...+| +++++||+|+++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGI---DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGI---DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 38999999999999888875 4566666 9999999888754 345667778887787 78899999999988
Q ss_pred ccccc------------cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWG------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~------------~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++. .+...+++++.|+|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 86553 2347899999999999999999854
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=109.74 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=78.8
Q ss_pred EEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHc-----CCCeE-EEEeccccCC-CCCCCeeEEEecccc
Q 006662 221 TAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALER-----GVPAL-IGVMASIRLP-YPSRAFDMAHCSRCL 292 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~er-----g~~~~-~~~~d~~~Lp-f~~~sFDlV~~s~~L 292 (636)
.||+||||||..-.++-. .+..++.+ |.++.|-+++.++ ...+. |.+++.+.+| ++++++|+|+|..+|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~l---Dpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCL---DPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEe---CCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 589999999987666653 36666677 7788887776432 33454 8889999999 899999999999999
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ..++.+.|+++.|+|||||.+++..+
T Consensus 156 CS-ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 156 CS-VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ec-cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 55 45999999999999999999999865
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=107.37 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=87.2
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC---EEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v---~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lp 277 (636)
+.+.+.+.+...++ .+|||+|||+|.++..+++... .++.+ |+++.+++.++++. ..+.+...+...++
T Consensus 27 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~~~~~~~~~~~~~~i---D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 27 WRRRAVKLIGVFKG--QKVLDVACGTGDLAIELAKSAPDRGKVTGV---DFSSEMLEVAKKKSELPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHhccCCC--CeEEEeCCCCChhHHHHHHhcCCCceEEEE---ECCHHHHHHHHHHhccCCCceEEecchhcCC
Confidence 33444555443333 4999999999999999988743 45555 88888888887654 24677788888888
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|+++.++++ ..++..+++++.++|+|||++++...
T Consensus 102 ~~~~~~D~i~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRN-VTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCC-cccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88889999999988844 45789999999999999999998754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-10 Score=108.29 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=76.5
Q ss_pred cCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 214 LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
+..+..+++||+|||.|.++..|+.+.-..+.+ |+++.+++.|++|. .++.+.+.+.... .|.+.||+|+++.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~Llav---Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE 114 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAV---DISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE 114 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEE---ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEE---eCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh
Confidence 345556699999999999999999995444455 88999999999874 3588888776543 5789999999999
Q ss_pred ccccccc--ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~--d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++.+.+ +...++..+...|+|||.|++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9966643 226789999999999999999864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=114.30 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----------CCeEEEE
Q 006662 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----------VPALIGV 270 (636)
Q Consensus 202 ~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----------~~~~~~~ 270 (636)
...++.+.+++... ...+.+|||||||+|.++..+++++..++++ |+++.+++.++++. ..+.+..
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gv---D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSAS---DISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 34455666666432 1123489999999999999999998777777 99999999887653 1345555
Q ss_pred eccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccc--------cccCCCCchhhhHH
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWES--------HWKGWNRTTEDLKS 341 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~--------~~~~W~~t~e~l~~ 341 (636)
.|...+ +++||+|+|..+++|+..+. ..+++.+.+ +.+||. +++..+..+.. .+.+.......+..
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeC
Confidence 554332 57899999999998876543 345666665 455555 44433332211 00010000011112
Q ss_pred HHHHHHHHHHHhceEeec
Q 006662 342 EQNGIETIARSLCWKKLI 359 (636)
Q Consensus 342 ~~~~ie~la~~l~Wk~v~ 359 (636)
..++++++++..+|+...
T Consensus 279 s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 279 AEADVERALKKAGWKVAR 296 (315)
T ss_pred CHHHHHHHHHHCCCEEEE
Confidence 346678888888887653
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.7e-10 Score=114.99 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=77.9
Q ss_pred CCcEEEEeCCCCcH----HHHHHhhcCC----EEEEcCcCCchHHHHHHHHHcC--------------------------
Q 006662 218 SIRTAIDTGCGVAS----WGAYLMSRNI----LAVSFAPRDTHEAQVQFALERG-------------------------- 263 (636)
Q Consensus 218 ~~r~VLDIGCGtG~----~a~~La~~~v----~vv~i~p~Dis~a~l~~A~erg-------------------------- 263 (636)
...+|+|+|||+|. ++..+++... ....+.+.|+++.+++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555555311 1123444499999999997531
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 264 ------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 264 ------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+.|.+.|....+++.++||+|+|..+++++.+.. ..+++++.++|+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 136777888888877788999999999997775322 6899999999999999999743
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-11 Score=102.95 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=52.6
Q ss_pred EEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC-C-CCCCeeEEEeccccc
Q 006662 223 IDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP-Y-PSRAFDMAHCSRCLI 293 (636)
Q Consensus 223 LDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp-f-~~~sFDlV~~s~~L~ 293 (636)
||||||+|.++..++++ ...++.+ |+|+.+++.++++ . .............. . ..++||+|+++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGV---DISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEE---ESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999988 4444444 7777777555433 1 22233333332222 1 235999999999996
Q ss_pred ccccChHHHHHHHHhcccCCcEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYW 316 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~L 316 (636)
|+ ++...+++++.++|||||.|
T Consensus 78 ~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred hh-hhHHHHHHHHHHHcCCCCCC
Confidence 66 78899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=113.77 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=85.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC-C--CeEEEEeccccCCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG-V--PALIGVMASIRLPYPSR 281 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg-~--~~~~~~~d~~~Lpf~~~ 281 (636)
+.+...++.-. +++|||||||.|.++..|+.+|. .+++++|....-.+.+++++-- . .+...-..++.+|. .+
T Consensus 105 ~rl~p~l~~L~--gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLK--GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhCCcC--CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 45555554223 45999999999999999999976 5889988776666666654332 2 23333356778887 78
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.||+|+|..+|.|.. +|-..|.++...|+|||.+++.+
T Consensus 182 ~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 999999999997765 99999999999999999999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-09 Score=107.10 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=77.6
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH-HcCC----------------CeEEEEeccccCCCC-CC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERGV----------------PALIGVMASIRLPYP-SR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~-erg~----------------~~~~~~~d~~~Lpf~-~~ 281 (636)
.+|||+|||.|..+.+|+++|..++++ |+++.+++.+. +++. .+.+.++|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~av---D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGV---ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEE---ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 389999999999999999999988888 99999988753 3332 356677787776533 35
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEE
Q 006662 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Lii 318 (636)
.||+|+...+++|+.++. ..++..+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999988887876555 7899999999999997554
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=111.71 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=76.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
+.+|||+|||+|.++..+++.+.. ++++ |+++.+++.|+++.....+ .+...++..+.+||+|+++... +
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~gi---Dis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~-~--- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAV---DIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILA-N--- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcH-H---
Confidence 349999999999999988887653 5555 8899999888765210000 0001112222379999997533 1
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 298 YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
....++.++.++|||||++++++... ...+.+.+.++..+|+.+.
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~-----------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILE-----------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcH-----------------hhHHHHHHHHHHCCCEEEE
Confidence 12578899999999999999996511 1123456667777887654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=107.56 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=77.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEecc-ccCC--CCCCCeeEEEe
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMAS-IRLP--YPSRAFDMAHC 288 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~-~~Lp--f~~~sFDlV~~ 288 (636)
..+|||+|||+|.++..+++. +..++++ |+++.+++.++++ + .++.+.+.+. ..++ +++++||+|++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gV---D~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGI---EVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEE---EechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 348999999999999999876 3345555 8888888887643 3 3578888887 6666 77889999999
Q ss_pred cccccccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~L~h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+... +|... ...+++++.++|||||+|+++.+
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 7654 44321 36789999999999999999854
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-09 Score=93.71 Aligned_cols=108 Identities=18% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEecccc-
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIR- 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~- 275 (636)
....+.+.+....+. +|||+|||+|.++..++++ +..++++ |+++.+++.++++ + .++.+...+...
T Consensus 7 ~~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 7 VRALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVPNGRVYAI---ERNPEALRLIERNARRFGVSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCceEEEE---cCCHHHHHHHHHHHHHhCCCceEEEecccccc
Confidence 334455555544444 8999999999999999987 3455566 8888888877543 2 245666555443
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++...++||.|++..... ....+++++.++|+|||+|++..
T Consensus 82 ~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ChhhcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 333346899999976542 23589999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-10 Score=97.94 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=68.2
Q ss_pred eeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC--CCC-CccceeeeccccccCCCCcC
Q 006662 481 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--TYP-RTYDLIHADSIFSLYKDRCE 557 (636)
Q Consensus 481 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~--~yp-~t~Dl~H~~~~fs~~~~~c~ 557 (636)
||+|||.|-++..|.+++. .+|+.+|.++.+++.+.++.--.-..-.+..+. ++| ++||+|++.++|... -+
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 8999999999999999833 466677777788888888776332111122222 344 999999999999876 56
Q ss_pred HHHHHHHHhhcccCCcEEEE
Q 006662 558 MEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 558 ~~~~l~e~dRiLrPgG~~i~ 577 (636)
...+|.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 78999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-09 Score=106.94 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=73.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhc----C--CEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR----N--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~--v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
..+|||||||+|.++..|++. + ..++++ |+++.+++.|+++. .++.+...+...++.++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI---DPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE---cCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 358999999999998888752 3 355666 99999999998763 245566666667777788999999999
Q ss_pred cccccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 291 CLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 291 ~L~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+++|+.++. ..+++++.|+++ |.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 997775332 579999999998 455554
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=105.57 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEec-cccCCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMA-SIRLPYPS 280 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d-~~~Lpf~~ 280 (636)
.+..+.-.+++.+..+...-|||||||+|.-+..|.+.+...+++ |+|+.|++.|.++-....+...| .+-+||.+
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGv---DiSpsML~~a~~~e~egdlil~DMG~Glpfrp 110 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGV---DISPSMLEQAVERELEGDLILCDMGEGLPFRP 110 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEee---cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCC
Confidence 445566667777776666799999999999999999998877788 99999999998765543343344 36799999
Q ss_pred CCeeEEEecccccccccC-------h----HHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQY-------D----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d-------~----~~~L~el~RvLKPGG~Liis~p 321 (636)
++||.|++..++ +|.-+ | ..++..++.+|++|+..++.-.
T Consensus 111 GtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 111 GTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 999999998877 66422 2 2467889999999999999865
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=112.69 Aligned_cols=121 Identities=22% Similarity=0.231 Sum_probs=80.6
Q ss_pred CCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHH----HcCCCe
Q 006662 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFAL----ERGVPA 266 (636)
Q Consensus 192 ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~----erg~~~ 266 (636)
..|..|..|.++......+++......+.+|||+|||+|.++...++.|. .++++ |+++.+++.|+ .+++..
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~---DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAI---DIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEE---ESSCHHHHHHHHHHHHTT-TT
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEe---cCCHHHHHHHHHHHHHcCCCe
Confidence 34556788888887777777764333345999999999999999988865 34444 55656666554 345544
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.+.. ......+.||+|+++-..... ..++..+.++|+|||+|++|+-
T Consensus 212 ~~~v~~--~~~~~~~~~dlvvANI~~~vL----~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 212 RIEVSL--SEDLVEGKFDLVVANILADVL----LELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CEEESC--TSCTCCS-EEEEEEES-HHHH----HHHHHHCHHHEEEEEEEEEEEE
T ss_pred eEEEEE--ecccccccCCEEEECCCHHHH----HHHHHHHHHhhCCCCEEEEccc
Confidence 443322 223445899999997644111 5788889999999999999975
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.7e-09 Score=111.34 Aligned_cols=120 Identities=17% Similarity=0.118 Sum_probs=83.6
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHH----cCCCeEE
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE----RGVPALI 268 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~e----rg~~~~~ 268 (636)
.++....+.-.+.+.+.++.... .+|||+|||+|.++..++++. ..++.+ |+++.+++.+++ ++....+
T Consensus 175 vFs~~~lD~gt~lLl~~l~~~~~--g~VLDlGCG~G~ls~~la~~~p~~~v~~v---Dis~~Al~~A~~nl~~n~l~~~~ 249 (342)
T PRK09489 175 VFSRDGLDVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLARHSPKIRLTLS---DVSAAALESSRATLAANGLEGEV 249 (342)
T ss_pred CCCCCCCCHHHHHHHHhccccCC--CeEEEeccCcCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCEE
Confidence 33344445555566666653332 379999999999999999873 355555 888888887764 3444555
Q ss_pred EEeccccCCCCCCCeeEEEeccccccccc----ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQ----YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 269 ~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...|... ...+.||+|+|+..++.... ....++.++.+.|||||.|+++..
T Consensus 250 ~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 250 FASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 5555432 23578999999988743221 226899999999999999999865
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=107.23 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-----
Q 006662 207 DIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----- 277 (636)
Q Consensus 207 ~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp----- 277 (636)
++.+.+. +.++. +|||||||+|.++..++++. ..++++ |+++ + ....++.+.++|....+
T Consensus 41 ~~~~~~~~~~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aV---Di~~-~-----~~~~~v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 41 EIQQSDKLFKPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIAC---DILP-M-----DPIVGVDFLQGDFRDELVLKAL 109 (209)
T ss_pred HHHHHhccCCCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEE---eccc-c-----cCCCCcEEEecCCCChHHHHHH
Confidence 3333343 34444 89999999999999998872 345555 5544 1 11234677888877643
Q ss_pred ---CCCCCeeEEEecccccccccCh-----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ---YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ---f~~~sFDlV~~s~~L~h~~~d~-----------~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+++||+|+|+.+. ++..++ ..+|.++.++|||||.|++...
T Consensus 110 ~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 567899999998766 443332 3588999999999999999754
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-09 Score=104.17 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=77.4
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~ 274 (636)
....+.+.+...++. +|||||||+|..+..+++. +..++++ |+++++++.|+++ +. .+.+..+|..
T Consensus 60 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~i---D~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTV---EIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 445566666555555 8999999999999888875 2456666 8888888877653 33 3677777776
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.......+||+|++..++.+.. .++.++|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 5544567899999988774433 57889999999998864
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=110.41 Aligned_cols=120 Identities=24% Similarity=0.280 Sum_probs=80.8
Q ss_pred CCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHc----CCCeEE
Q 006662 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALER----GVPALI 268 (636)
Q Consensus 194 g~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~er----g~~~~~ 268 (636)
|-.|..|.+.......+++.....++++|||+|||+|.++...++.|.. ++++ |+.+-+++.|+++ +++...
T Consensus 138 GlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~---DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 138 GLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGV---DIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred ccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEe---cCCHHHHHHHHHHHHHcCCchhh
Confidence 3345555555555555555433334569999999999999999999754 5555 7777777777643 444211
Q ss_pred EEeccccCCCCC-CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 269 GVMASIRLPYPS-RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 269 ~~~d~~~Lpf~~-~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.......+..+. +.||+|++|-.- ++ ..+..++.+.|||||++++|+-
T Consensus 215 ~~~~~~~~~~~~~~~~DvIVANILA-----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 215 QAKGFLLLEVPENGPFDVIVANILA-----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred hcccccchhhcccCcccEEEehhhH-----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 111112222333 589999997632 33 6889999999999999999974
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=101.04 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=74.2
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
+|||+|||+|.++..+++.+..++++ |+++.+++.++++ +..+.+...|....+ .++||+|+++..+++..
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGKCILTT---DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 89999999999999999987666666 8899998887654 345666666654433 45899999987775443
Q ss_pred cC--------------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QY--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d--------------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ...++.++.++|+|||.+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 21 14679999999999999999864
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=100.54 Aligned_cols=130 Identities=23% Similarity=0.254 Sum_probs=86.3
Q ss_pred EEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-C-CCCCCCeeEEEeccccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-L-PYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-L-pf~~~sFDlV~~s~~L~h~~~ 297 (636)
+|||||||+|.++..+++. +..++++ |+++++++.+.+++. .+...+... + ++++++||+|+++.+++|. .
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~-~ 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQAT-R 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcC-c
Confidence 8999999999999999765 4445566 889999988877654 455556544 4 4778899999999999554 5
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeCCCC-cc-------c------c--ccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 298 YDGLYLIEVDRVLRPGGYWILSGPPVN-WE-------S------H--WKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Liis~p~~~-w~-------~------~--~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
++..+++++.|++++ .+++.|... |. . . ...|...........+++.++++..+++.+.
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 888999999887654 444433211 10 0 0 0012121111123456677888888887654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=100.58 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=79.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCC-CCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP-SRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~-~~sFDlV~~s~~L 292 (636)
..+|||+|||+|.++..+++.+..++.+ |+++.+++.++++ +. ++.+...+....+.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~i---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGI---DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999998887666666 8888888777653 33 466777776666544 3789999999988
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++. .++..++.++.++|+|||.++++.+
T Consensus 123 ~~~-~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHV-PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhC-CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 554 5889999999999999999999865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-08 Score=97.32 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=78.1
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEE
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GV-PALIGV 270 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~ 270 (636)
+-..+.....+.+.+...++. +|||+|||+|.++..++++. ..++.+ |+++.+++.++++ +. .+.+..
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~n~~~~~~~~i~~~~ 87 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAK--HLIDVGAGTGSVSIEAALQFPSLQVTAI---ERNPDALRLIKENRQRFGCGNIDIIP 87 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCC--EEEEECCcCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCCeEEEe
Confidence 333444444555666555544 89999999999999998863 455566 8888888877643 22 355655
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+.. .++ .++||+|++..... ....++.++.++|+|||++++..
T Consensus 88 ~d~~-~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 88 GEAP-IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCch-hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 5542 233 35799999876542 33678999999999999999874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=98.60 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=70.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
.+|||+|||+|.++..++.. +..++++ |.++.+++.+++ .+. ++.+..++...++ ..++||+|++.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~i---D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLL---ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEE---eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 48999999999999988765 3455666 788877766543 343 4788888887764 357899999865 3
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+...+++.+.++|+|||.+++..
T Consensus 119 ----~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ----ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 244678899999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=107.04 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=79.8
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
.+.+.+.+...++. +|||||||+|.++..++++ +..++.+ |. +.+++.++++ +. .+.+..+|....
T Consensus 138 ~~~l~~~~~~~~~~--~vlDiG~G~G~~~~~~~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVK--KMIDVGGGIGDISAAMLKHFPELDSTIL---NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHHHHcCCCCCC--EEEEeCCchhHHHHHHHHHCCCCEEEEE---ec-HHHHHHHHHHHHhCCccceEEEEecCccCC
Confidence 34455555444444 9999999999999999988 3555555 55 4566665432 33 367777887666
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+++. +|+|++++++++|.++. ..+++++.++|||||++++...
T Consensus 212 ~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 212 SYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6653 69999999997776443 6799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=101.03 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=74.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC---CCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP---YPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp---f~~~sFDlV~~s 289 (636)
.++||||||+|.++..++++ ...++++ |+++.+++.|.++ + .++.+..+|...++ +++++||.|+++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gv---D~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGI---EIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEE---EeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 38999999999999999987 3445555 7788888777543 2 25788888876654 556799999987
Q ss_pred ccccccccCh--------HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~p 321 (636)
... +|.... ..++.++.|+|||||.|++...
T Consensus 95 ~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 95 FPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 654 554322 4689999999999999999854
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=110.87 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC----CeE
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV----PAL 267 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~----~~~ 267 (636)
..+.|.-.+.+.+.++...+ .+|||+|||+|.++..++++ ...++.+ |+++.+++.|+++ +. .+.
T Consensus 210 ~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~v---D~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 210 RTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFV---DESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred CCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCcccCceEE
Confidence 34455555567777764433 38999999999999999987 3455556 8899999888754 22 345
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccc--cC--hHHHHHHHHhcccCCcEEEEEe
Q 006662 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWG--QY--DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 268 ~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~--~d--~~~~L~el~RvLKPGG~Liis~ 320 (636)
+...|... .++..+||+|+|+..++... .+ ...++.++.++|+|||.|+++.
T Consensus 285 ~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 285 FMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 55544422 23456899999987773221 11 1578999999999999999995
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-09 Score=108.90 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCceecCCC-CCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc-
Q 006662 185 GDRFSFPGG-GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER- 262 (636)
Q Consensus 185 g~~~~F~gg-g~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er- 262 (636)
+..+.|... |-|.....|.-.+.|++.++...+. +|||+|||.|.++..|+++.. ...++..|++..+++.|+++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhH
Confidence 344454332 3344455666666777777765554 899999999999999999854 12344458899999888754
Q ss_pred ---CCCeEEEEeccccCCCCCCCeeEEEecccccccccChH----HHHHHHHhcccCCcEEEEEeC
Q 006662 263 ---GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG----LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 263 ---g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~----~~L~el~RvLKPGG~Liis~p 321 (636)
++.......+..-.+.++ +||+|+|+--+|.-..-.. +++.+..+.|++||.|.|+..
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 333312233333445555 8999999997743322223 789999999999999999965
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=101.94 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=84.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH-----------------cCCCeEEEEeccccCCCC---
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE-----------------RGVPALIGVMASIRLPYP--- 279 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e-----------------rg~~~~~~~~d~~~Lpf~--- 279 (636)
.+||+.|||.|.-+.+|+++|..++++ |+|+.+++.+.+ ++..+.+.++|...++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~Gv---DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGI---ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEE---ecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 489999999999999999999988888 999999888644 234678889998888642
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.||+|+-..+++++.++. ..+.+.+.++|+|||.+++...
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 26899999988898887666 7899999999999999988754
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=100.84 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=70.8
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+|||+|||+|.++..+++.+. .++.+ |+++.+++.++++ +..+.+...|... .+++++||+|+++..+.+
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~v---D~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAV---DISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 3899999999999999988754 55555 8888888876543 4455666666544 345678999999754322
Q ss_pred cccC--------------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 WGQY--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~~~d--------------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
-... ...++.++.++|||||.+++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1110 24578889999999999998754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-09 Score=107.69 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=96.7
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-CC-CCCCCeeEEEeccccc
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-Lp-f~~~sFDlV~~s~~L~ 293 (636)
.+..+++||+|||||-.+..|...--...++ |+|++|++.|.+++.--.+.+++... ++ .....||+|.+..++
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv---DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl- 198 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMADRLTGV---DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL- 198 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHhhccCC---chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH-
Confidence 3446799999999999999988774333344 99999999999998755555555432 22 456789999999999
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC--CCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p--~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
.+..+.+.++.-+...|+|||.|.+|.- +..|...- .+...+-.....+..+.+..+++.+.
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l----~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL----GPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec----chhhhhccchHHHHHHHHhcCceEEE
Confidence 5555889999999999999999999953 22221111 12222333345577788888887765
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=101.16 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
......+.+.+...++. +|||||||+|.++..+++. +..++++ |+++.+++.++++ +. ++.+..+|.
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~v---E~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTI---ERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 33445666666666665 9999999999999988876 2456666 8888888888654 33 477888887
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
...+.+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 6665567889999997765332 246777899999999864
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=101.68 Aligned_cols=109 Identities=25% Similarity=0.248 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~ 274 (636)
....+.+.+.+.. ......+|||||||+|.++..|++.+..++++ |+++.+++.|+++. . .+.+...+
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVAS---DISPQMVEEARERAPEAGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccCcEEEEcC--
Confidence 3444455555543 11223489999999999999999987766666 88999998887652 2 35566555
Q ss_pred cCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEE
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYW 316 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~L 316 (636)
++..+++||+|++..+++|+.... ..+++++.+++++++.+
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 444568899999999997775333 67888888877544443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=100.73 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
....+.+.+...++. +|||||||+|.++..|++.. ..++++ |+++.+++.|+++ +. ++.+...|...
T Consensus 65 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~v---D~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSI---ERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 445666666666665 99999999999999998872 235566 7788888877654 33 46777777765
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.......||+|++.....+ +...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 4444568999998765522 3356889999999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-09 Score=104.29 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCC------eEEEEeccccCCCCCCCeeEEEe
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVP------ALIGVMASIRLPYPSRAFDMAHC 288 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~------~~~~~~d~~~Lpf~~~sFDlV~~ 288 (636)
..+. +.++|+|||+|..+..+++.--.++++ |++++|++.|.+.... ......+...|--.++|.|+|+|
T Consensus 31 ~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIat---D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 31 TEGH-RLAWDVGTGNGQAARGIAEHYKEVIAT---DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CCCc-ceEEEeccCCCcchHHHHHhhhhheee---cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehh
Confidence 3443 389999999998777788774444455 8899999999765321 22221122222233899999999
Q ss_pred cccccccccChHHHHHHHHhcccCCc-EEEEE
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGG-YWILS 319 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG-~Liis 319 (636)
..|+ ||. +.+.+++++.|+||+.| .+.+-
T Consensus 107 Aqa~-HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 107 AQAV-HWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hhhH-Hhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 9999 998 77999999999999877 55444
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=91.36 Aligned_cols=99 Identities=23% Similarity=0.370 Sum_probs=76.9
Q ss_pred cEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC--CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP--YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp--f~~~sFDlV~~s~ 290 (636)
.+|||+|||+|.++..+++.+ ..++++ |+++..++.++++ + .++.+.+.|..... +++++||+|+++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gv---di~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGV---DIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEE---ESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEE---EECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 389999999999999999987 666666 8999998888754 2 25788888887765 7789999999987
Q ss_pred cccccccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
-+...... ...+++++.++|||||.+++..|
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 66433211 15789999999999999999764
|
... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=92.37 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=76.0
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCC---eEEEEeccccCCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVP---ALIGVMASIRLPYPS 280 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~---~~~~~~d~~~Lpf~~ 280 (636)
+.+.+...++. +|||+|||+|.++..+++++..++++ |+++.+++.++++ +.. +.+...|... ++.+
T Consensus 15 l~~~~~~~~~~--~vLd~G~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 15 LAENAVDKKGD--RVLEVGTGSGIVAIVAAKNGKKVVGV---DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred HHHhhhccCCC--EEEEEccccCHHHHHHHhhcceEEEE---ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccc
Confidence 33444333444 89999999999999999887666666 8888888877543 222 5666666543 4555
Q ss_pred CCeeEEEeccccccccc--------------------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQ--------------------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~--------------------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+++..+.+..+ ....+++++.++|||||.+++..+
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 68999998765433110 024579999999999999988765
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=96.64 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
...+++.+.+.+.. ...+|||+|||+|.++..+++. +..++++ |+++.+++.++++ +. ++.+..++.
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAV---DISPEALAVARKNAARLGLDNVTFLQSDW 146 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence 44555666555532 2348999999999999999986 4455566 8888888877643 33 367777776
Q ss_pred ccCCCCCCCeeEEEecccccc------cccC-------------------hHHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIP------WGQY-------------------DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h------~~~d-------------------~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. ++++++||+|+++..+.. +..+ ...++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 54 456789999999654321 1000 0257889999999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=108.35 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=75.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcCC-CeEEEEeccccC--CCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRL--PYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg~-~~~~~~~d~~~L--pf~~~sFDlV~~s~ 290 (636)
..+||||||+|.++..++++ ...++++ |++..+++.+. +++. ++.+..+|+..+ .+++++||.|++++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGI---EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGI---EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 38999999999999999987 3445555 77777766554 3343 577888887654 47889999999976
Q ss_pred cccccccCh------HHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYD------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~------~~~L~el~RvLKPGG~Liis~ 320 (636)
.. +|.... ..++.++.|+|+|||.+.+.+
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 675433 479999999999999999985
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-08 Score=104.05 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=83.0
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~ 280 (636)
..+..+....++. +|||+|||+|.++..++..+..++++ |+++.+++.++++ +. .+.+...|...+|+++
T Consensus 172 ~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~---Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 172 RAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGC---DIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEE---cCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 3444444445555 89999999999998888777776676 8898888876644 33 3577788998999888
Q ss_pred CCeeEEEecccccc---ccc----C-hHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIP---WGQ----Y-DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h---~~~----d-~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+++.-+.. ... + ...++.++.++|||||++++..|
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 89999999643211 000 1 26799999999999999999876
|
This family is found exclusively in the Archaea. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-08 Score=96.39 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHH----hhcc--cchhh
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 527 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~----eRgl--i~~~~ 527 (636)
+.|++++-.-..+...+.. ..+|||+|||+|.++..|+. .+- ..|+.+|.++.++..+. +.|+ +-.++
T Consensus 27 ~~~~~~~~d~l~l~~~l~~---g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG---GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3899887543333333444 56899999999998887764 221 35667777766775554 3444 33344
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE--EeccCC
Q 006662 528 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR--IADHEN 605 (636)
Q Consensus 528 ~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~--~~~~e~ 605 (636)
.-.+.+.. ..+||+|-++. -..+++++-++.|+|||||.+++-+.......+.++++.+.|.+. +.-+-.
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 33333433 57999999854 245789999999999999999999888888999999999999865 222223
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
|-.++-.+.|.+|+
T Consensus 174 ~~~~~~~~~~~~~~ 187 (187)
T PRK00107 174 GLDGERHLVIIRKK 187 (187)
T ss_pred CCCCcEEEEEEecC
Confidence 44345567777774
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=96.56 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=69.6
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccC----CCCCC
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRL----PYPSR 281 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~L----pf~~~ 281 (636)
.+++.++. +|||+|||+|.++..+++.. -.++++ |+++.+++.+.++ ..++.+..+|.... ++. +
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~av---D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAV---EFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEE---ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-c
Confidence 46666666 99999999999999999862 345555 8888777644322 13466666666431 223 5
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|++.... ......++.++.|+|||||+++++.+
T Consensus 141 ~~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 141 KVDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred cCCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 69999864321 11124568999999999999999754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=102.82 Aligned_cols=99 Identities=10% Similarity=0.139 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCCcHHHHHHhh--c--CCEEEEcCcCCchHHHHHHHHHcC-------CCeEEEEeccccCCCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQFALERG-------VPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~--~--~v~vv~i~p~Dis~a~l~~A~erg-------~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
.+++|||||||.|.++..++. . +..++++ |.++++++.|++.. ..+.|..+|....+...+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~gi---D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNF---DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 345999999998855444332 2 3345566 88988888887532 24788888877654345789999
Q ss_pred Eecccccccc-cChHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWG-QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~-~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++. ++++|. .++..++..+.+.|+|||+|++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 998 887884 566999999999999999999985
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=94.58 Aligned_cols=162 Identities=16% Similarity=0.269 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHH----HHHcCCC-e-EEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF----ALERGVP-A-LIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~----A~erg~~-~-~~~~~d~~~ 275 (636)
+...+.|.++++.. +. +|||||||||..+.+++++-.. +...|.|..+....- ..+.+.+ + .-..+|+..
T Consensus 12 ~pIl~vL~~~l~~~-~~--~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-GT--RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCcc-Cc--eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 34555566665322 11 6999999999999999998432 246666776655321 2222221 1 011223322
Q ss_pred C--CC------CCCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeCCCCccccccC-------C---CCc
Q 006662 276 L--PY------PSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG-------W---NRT 335 (636)
Q Consensus 276 L--pf------~~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~-------W---~~t 335 (636)
- |. ..++||+|+|..++ |+.+-. +.+|+.+.++|+|||.|++.+|...--..... | +++
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC
Confidence 2 32 35689999999988 766554 78999999999999999999983331111000 1 111
Q ss_pred hhhhHHHHHHHHHHHHHhceEeec-----ccccEEEEeC
Q 006662 336 TEDLKSEQNGIETIARSLCWKKLI-----QKKDLAIWQK 369 (636)
Q Consensus 336 ~e~l~~~~~~ie~la~~l~Wk~v~-----~~~~~aIWqK 369 (636)
.-.++. .+.+.+++...+++... .++.+.||+|
T Consensus 167 ~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 167 EWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 223332 34688899998887654 2445677876
|
The function of this family is unknown. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-08 Score=102.19 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=70.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecccc-CCCCCC----CeeE
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR-LPYPSR----AFDM 285 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~-Lpf~~~----sFDl 285 (636)
.+|||+|||+|..+..|++. +..++.+ |+|++|++.+.++ . +++....+|... ++++.. ...+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~i---DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPI---DISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEE---ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 48999999999999999887 3555666 9999999888654 2 335556777654 344433 2334
Q ss_pred EEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+++...+.++.++. ..+|+++.++|+|||.|++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 44445554444222 679999999999999999975
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=92.31 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=73.6
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecccc-CCCC
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR-LPYP 279 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~-Lpf~ 279 (636)
..+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.++++ + .++.+...+... ++..
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~av---D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAV---DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 344445555 9999999999999988764 3455666 8888888877543 3 245666666654 2333
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.||.|++.... .+...++.++.++|||||++++...
T Consensus 109 ~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 4689999985422 3557899999999999999998643
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.4e-08 Score=81.63 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=72.3
Q ss_pred EEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHH---c--CCCeEEEEeccccCCC-CCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALE---R--GVPALIGVMASIRLPY-PSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~e---r--g~~~~~~~~d~~~Lpf-~~~sFDlV~~s~~L~ 293 (636)
++||+|||.|.++..+++ ....+..+ |.++.+++.+.+ . .....+...+...... ..+.||+|++..++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGV---DISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999999988 34455555 778777776651 1 1345666666655543 567899999999885
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++......+++.+.+.|+|||.+++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53556689999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=95.41 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=74.8
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf 278 (636)
....+.+++...++. +|||+|||+|.++..|++....++++ |+++.+++.++++ +. ++.+...|......
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~v---d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFSV---ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEEE---eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 344556666555555 99999999999999888775455556 7788888877654 22 46677666543222
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+.||+|++...+.++ ..++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~-------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI-------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh-------hHHHHHhcCCCcEEEEEEc
Confidence 34789999997765332 3567899999999999754
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=96.28 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=85.7
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcC------CCe
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERG------VPA 266 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg------~~~ 266 (636)
..|+.+.|.. .|..+.+... ..+|||+|||+|..+..++++ . +.++++ ++.+.+.++|.++- ..+
T Consensus 25 ~~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~V---Eiq~~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 25 CGFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGV---EIQEEAAEMAQRNVALNPLEERI 97 (248)
T ss_pred CccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEE---EeCHHHHHHHHHHHHhCcchhce
Confidence 3355666765 4666655444 459999999999999999998 3 444455 88889998887542 236
Q ss_pred EEEEeccccCC--CCCCCeeEEEecccccccccC-----------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 267 LIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQY-----------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 267 ~~~~~d~~~Lp--f~~~sFDlV~~s~~L~h~~~d-----------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+...|...+. ....+||+|+|+--+..-... .+.+++...++|||||++.+..+
T Consensus 98 ~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 98 QVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred eEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 77777776654 334579999997655332222 24688889999999999999976
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=106.29 Aligned_cols=127 Identities=15% Similarity=0.232 Sum_probs=89.2
Q ss_pred hcchhhHHHHHHHHHHHHHhhhc--cCCC--------------CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCc
Q 006662 448 EMFREDTALWKKRVTYYKSVDYQ--LAQP--------------GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKI 511 (636)
Q Consensus 448 ~~f~~d~~~w~~~v~~y~~~~~~--l~~~--------------~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~ 511 (636)
..|.+.+++-...+..|+.+++. +.+| .....|||+|||+|+++.+|++.. ...|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 56888888877778888877652 3332 245789999999999999887642 23566777777
Q ss_pred cchHHHHhhcc----cchhhcccccc--CCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 512 NTLGVIYERGL----IGTYQNWCEAM--STYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 512 ~~l~~~~eRgl----i~~~~~~ce~~--~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+++..+.+|-- +... +..+ .+|| .+||+|++...|-.. ...+...+|-|+-|+|||||++++.|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~---~~D~~~~~~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFE---ANDILKKDFPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEE---ECCcccCCCCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888887632 2221 1222 2465 799999985544322 223568999999999999999999874
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=90.91 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=77.2
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH----HcCCC--eEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~----erg~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
+|||+|||.|.+...|++.+... .+.++|.++.+++.|. .++.+ +.|.++|+..-.+..+.||+|+--..+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999997642 2566699999998875 33444 88999998777788899999996444321
Q ss_pred c--ccC-----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 W--GQY-----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~--~~d-----~~~~L~el~RvLKPGG~Liis~p 321 (636)
. .++ +..++..+.++|+|||+|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 1 111 14688999999999999999865
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-07 Score=100.21 Aligned_cols=134 Identities=10% Similarity=0.124 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
++..++.+.+.++ ++ .+|||+|||+|.++..++.. +..++++ |+++.+++.|+++ +.++.+..+|..
T Consensus 238 TE~LVe~aL~~l~--~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAV---DiS~~ALe~AreNa~~~g~rV~fi~gDl~ 310 (423)
T PRK14966 238 TEHLVEAVLARLP--EN--GRVWDLGTGSGAVAVTVALERPDAFVRAS---DISPPALETARKNAADLGARVEFAHGSWF 310 (423)
T ss_pred HHHHHHHhhhccC--CC--CEEEEEeChhhHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 3445555544332 23 38999999999999998865 4556666 8899999888754 445777777765
Q ss_pred cCCCC-CCCeeEEEeccccccccc--------------------Ch----HHHHHHHHhcccCCcEEEEEeCCCCccccc
Q 006662 275 RLPYP-SRAFDMAHCSRCLIPWGQ--------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHW 329 (636)
Q Consensus 275 ~Lpf~-~~sFDlV~~s~~L~h~~~--------------------d~----~~~L~el~RvLKPGG~Liis~p~~~w~~~~ 329 (636)
...++ .++||+|+|+.-...-.. +. ..++.++.+.|+|||.+++....
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~------- 383 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF------- 383 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-------
Confidence 43332 457999999764321110 11 25667778899999999887431
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 330 KGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 330 ~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
. ..+.++++++..+|+.+.
T Consensus 384 ----~-------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 384 ----D-------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred ----c-------HHHHHHHHHHHCCCcEEE
Confidence 0 123466677777776543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-07 Score=93.83 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG-----VPALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~ 273 (636)
.+.+++.+...+...++ .+|||+|||+|.++..++... ..++++ |+++.+++.++++. .++.+...|.
T Consensus 93 te~l~~~~~~~~~~~~~--~~vLDiG~GsG~~~~~la~~~~~~~v~~i---Dis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 93 TEELVEWALEALLLKEP--LRVLDLGTGSGAIALALAKERPDAEVTAV---DISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred cHHHHHHHHHhccccCC--CEEEEEcCcHHHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 34555555544333333 489999999999999999873 555556 88999988887652 2466776665
Q ss_pred ccCCCCCCCeeEEEecccccccc-------------------------cChHHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWG-------------------------QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~-------------------------~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. +++.++||+|+++.-..... .....++.++.++|+|||++++..
T Consensus 168 ~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 168 FE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33 33457899999964332110 001457788889999999999964
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.9e-07 Score=104.90 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=79.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----ccc----chhh-ccccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli----~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
.++|||++||+|+|+.+++..+. -.|+.+|.++..+..+.+. |+- -+++ |..+-+..+.+.||+|=++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999988754 2466667776777766542 331 1111 22222222367899987752
Q ss_pred c-cccCC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEec
Q 006662 548 I-FSLYK-------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 548 ~-fs~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~ 602 (636)
= |+..+ ..-+.+.++...-|+|+|||.+++......+....+.+..-.+.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 2 21111 0112457888889999999999997655544445666777778887664
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-07 Score=91.67 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=77.6
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDl 285 (636)
+.+.+.+...+. ...|-|+|||.+.++..+. .+..+.++ |+.. .+-.+...|+..+|+++++.|+
T Consensus 61 d~iI~~l~~~~~-~~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva----------~n~~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 61 DVIIEWLKKRPK-SLVIADFGCGDAKLAKAVP-NKHKVHSF---DLVA----------PNPRVTACDIANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHHCTS-T-TS-EEEES-TT-HHHHH---S---EEEE---ESS-----------SSTTEEES-TTS-S--TT-EEE
T ss_pred HHHHHHHHhcCC-CEEEEECCCchHHHHHhcc-cCceEEEe---eccC----------CCCCEEEecCccCcCCCCceeE
Confidence 445555543322 3489999999999997764 44455566 4321 0113667889999999999999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccccc--
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD-- 363 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~~-- 363 (636)
+++..+| +..+-..++.|+.|+|||||.|.|..-..++. ..+.+.+..+.+|++...+...
T Consensus 126 ~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~---------------~~~~F~~~~~~~GF~~~~~d~~n~ 188 (219)
T PF05148_consen 126 AVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKSRFE---------------NVKQFIKALKKLGFKLKSKDESNK 188 (219)
T ss_dssp EEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S----------------HHHHHHHHHCTTEEEEEEE--ST
T ss_pred EEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEecccCc---------------CHHHHHHHHHHCCCeEEecccCCC
Confidence 9987776 44577899999999999999999986422111 1244666788999988764321
Q ss_pred ---EEEEeCCC
Q 006662 364 ---LAIWQKPT 371 (636)
Q Consensus 364 ---~aIWqKp~ 371 (636)
+..++|..
T Consensus 189 ~F~~f~F~K~~ 199 (219)
T PF05148_consen 189 HFVLFEFKKIR 199 (219)
T ss_dssp TEEEEEEEE-S
T ss_pred eEEEEEEEEcC
Confidence 34566654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.8e-08 Score=102.68 Aligned_cols=101 Identities=28% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC---------------CCeEEEEeccccC----C
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG---------------VPALIGVMASIRL----P 277 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg---------------~~~~~~~~d~~~L----p 277 (636)
...+|||+|||-|.-..-+...++ ..+++ |++...++.|++|. ..+.+...|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~---Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGI---DISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEE---ES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEE---eCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 445999999999887777766654 44556 88888888887664 2355566654321 1
Q ss_pred CC--CCCeeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YP--SRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~--~~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
++ ...||+|-|.+++|+..... ..+|.++.+.|||||+|+.+.|
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 23 35999999999997766555 4699999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-07 Score=95.93 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=67.7
Q ss_pred ccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHH----HHHHHHHcCCCeEEEEecccc---CCCCCCC
Q 006662 213 NLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEA----QVQFALERGVPALIGVMASIR---LPYPSRA 282 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a----~l~~A~erg~~~~~~~~d~~~---Lpf~~~s 282 (636)
.+.++. +|||+|||+|.++..+++.- -.++.+ |+++. +++.+.++ .++.+...|... ......+
T Consensus 129 ~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAV---D~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 129 PIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAV---EFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEE---ECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCC
Confidence 445555 99999999999999999871 234444 66654 55555444 456666666532 1223458
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
||+|++.... .++...++.++.++|||||+|++..
T Consensus 203 vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 203 VDVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEE
Confidence 9999986632 2233567789999999999999963
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.1e-07 Score=93.05 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=70.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
.+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ +. .+.+...|... ++++++||+|+++.-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~av---Dis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAV---DISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 48999999999999999986 4566666 8899999888754 43 36677777533 345568999999632
Q ss_pred ccc------c----ccCh--------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIP------W----GQYD--------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h------~----~~d~--------------~~~L~el~RvLKPGG~Liis~p 321 (636)
... . ..++ ..++.++.++|+|||++++...
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 111 0 0011 4578889999999999998754
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-08 Score=96.54 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=72.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC-CCccceeeeccccccCC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-PRTYDLIHADSIFSLYK 553 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y-p~t~Dl~H~~~~fs~~~ 553 (636)
....+|||+|||.|.++..|.+.+. +++.+|.++.++.. +......+ ....... +++||+|.|.++|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNF--DAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEE--ECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhh--hhhhhhccccchhhHhhHHHHhhcc
Confidence 3477999999999999999988876 66777777556655 22211111 0112223 38999999999998766
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+...+|-+|-|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 5789999999999999999999764
|
... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-07 Score=90.07 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
..+....+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.++++ +. ++.+...|.
T Consensus 25 ~~~v~~~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~v---D~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 25 KREVRLLLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAI---ERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 344444566666555555 8999999999999998864 3456666 8888888877643 32 466666665
Q ss_pred cc-CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~-Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ++.....+|.++... ..+...++.++.++|+|||++++..+
T Consensus 100 ~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 33 222223457665421 22347899999999999999999864
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.5e-06 Score=90.35 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc-----cchhhccccccCCCC-Cccceeeec
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-----IGTYQNWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-----i~~~~~~ce~~~~yp-~t~Dl~H~~ 546 (636)
..|||+|||+|-.+.+|+++ |- ..|+.+|.+...+..+.+. +. +.++ +...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 58999999999999999875 22 2455567666677666542 11 1222 233445554 689999998
Q ss_pred cccccCCC--CcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 547 SIFSLYKD--RCEMEDVLLEMDRILRPEGSVIIRD--DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 547 ~~fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
--|-..+. .-....++.+.-|+|+|||.++|-- ..++..+++++.. ++...... .+-+|+-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 77653221 1123578899999999999999963 3446677777554 33333222 4667888877
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-08 Score=98.38 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=85.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
...++|||||.|.....|..+++. .+...|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 347999999999999999998753 333448888999888654 345677888999999999999999999999 99
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+....+.++...|||.|.|+-+..
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHh
Confidence 98889999999999999999998743
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.5e-08 Score=99.93 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=71.8
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc---------cchhhccccccCCCC-Cccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---------i~~~~~~ce~~~~yp-~t~Dl~H~ 545 (636)
..+|||+|||+|.++..|.++ +. --+|+.+|.+++++..+.+|.- +...+.-.+.+ +|| .+||+|.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 568999999999999888764 21 0266778888899999987631 11222112333 455 79999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..++.... +...+|.||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 76665443 56899999999999999999986
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=90.98 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=80.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf 278 (636)
....+.+++...++. +|||||||+|..++.|++..-.++++ +..+...+.|+++ +. ++.+.++|...---
T Consensus 60 ~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~si---Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSI---ERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEE---EEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 445677777777777 99999999999999999985567777 7788888888654 33 57777777644333
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+...||.|+.+.+....+ ..+.+.||+||.+++-.
T Consensus 135 ~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 457899999988774444 46778899999999964
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=91.04 Aligned_cols=72 Identities=22% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHHcC--------CCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 249 RDTHEAQVQFALERG--------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 249 ~Dis~a~l~~A~erg--------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.|+|+.|++.|+++. .++.+.++|...+|+++++||+|++..+++++ +++..+++++.|+|||||.|++..
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEEEE
Confidence 388999999986542 24789999999999999999999999999554 588999999999999999999985
Q ss_pred C
Q 006662 321 P 321 (636)
Q Consensus 321 p 321 (636)
.
T Consensus 82 ~ 82 (160)
T PLN02232 82 F 82 (160)
T ss_pred C
Confidence 4
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=94.15 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcCC------CeEEEEe
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV------PALIGVM 271 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg~------~~~~~~~ 271 (636)
+-..+.+-++++.......+||+||||.|.....+++- +..+... |.++.+++..+++.. .+.+..+
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac---Dfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC---DFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEc---CCChHHHHHHHhccccchhhhcccceec
Confidence 33445566666544433347999999999988888775 2445555 999999998875531 2233333
Q ss_pred cccc--CCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCC
Q 006662 272 ASIR--LPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 272 d~~~--Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~ 323 (636)
.... -|.+.+++|+|++.++|....++. ..++.++.++|||||.+++.....
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3333 346689999999999998777666 789999999999999999996533
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=92.37 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEEec
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMA 272 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~~d 272 (636)
++.+++.+.+.+..... ..+|||+|||+|.++..++.. +..++++ |+++.+++.|+++ +.. +.+..+|
T Consensus 98 te~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~~~~~v~av---Dis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 98 TEELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEFPNAEVIAV---DISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred cHHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34455554443321111 148999999999999999986 3456666 8899999888754 332 6777777
Q ss_pred cccCCCCCCCeeEEEecccccc------------ccc------------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIP------------WGQ------------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h------------~~~------------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
... +++.+.||+|+++.-... +.+ ....++.++.++|+|||++++...
T Consensus 174 ~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 174 LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 543 345558999999632211 110 114678889999999999999754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=91.00 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCe
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAF 283 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp--------f~~~sF 283 (636)
.++. +|||+|||+|.++..++++. ..++++ |+++.+ ....+.+...|....+ ++.++|
T Consensus 31 ~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~v---Dis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAV---DLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEE---eccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 4444 89999999999999888762 234444 555433 1234556666655432 456789
Q ss_pred eEEEeccccc---ccccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLI---PWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~---h~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|++..+.+ +|..+ ...++.++.++|+|||++++..+
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9999864321 11111 25789999999999999999753
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.7e-08 Score=97.94 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=76.7
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhccc-c-----hhhccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-G-----TYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli-~-----~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
+..+|||++||+|=+|..+++.-= .-.|+..|-+.+||.++.+|-.= | .++.-.|.++ || ++||++=+..-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 578999999999999999987621 45778889888999999999772 2 2233335666 76 99999877443
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+-.. -+++..|-||-|||+|||.+++-|
T Consensus 129 lrnv---~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNV---TDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcC---CCHHHHHHHHHHhhcCCeEEEEEE
Confidence 3332 378999999999999999998865
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.57 E-value=8e-08 Score=100.46 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=74.7
Q ss_pred HHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHH----HhhcccchhhccccccCC
Q 006662 461 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAMST 535 (636)
Q Consensus 461 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgli~~~~~~ce~~~~ 535 (636)
.+.+..++..++- ....+|||+|||.||++-+++++ ++ +|+.+..++++...+ .++||-....--+..+..
T Consensus 48 ~~k~~~~~~~~~l-~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 48 ERKLDLLCEKLGL-KPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHhCC-CCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 3344444444333 34779999999999999999988 65 344444555676654 578886555544555666
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 536 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 536 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++-+||-|=+.++|..... -+.+.+|-.++|+|+|||.+++.
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 7779999999898886643 46789999999999999999985
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-08 Score=98.17 Aligned_cols=176 Identities=17% Similarity=0.193 Sum_probs=109.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhccC----CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCC
Q 006662 190 FPGGGTMFPRGADAYIDDIGKLINLK----DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVP 265 (636)
Q Consensus 190 F~ggg~~f~~g~~~~id~L~~lL~l~----~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~ 265 (636)
|.|.|.||--+.+.+. +++.+. .....++||+|+|.|..+..++..-- .+...++|..|....++.+-+
T Consensus 84 ~lgrGsMFifSe~QF~----klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFR----KLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHH----HHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCCc
Confidence 7788888866655443 333322 22346899999999999999887632 244447788888877666533
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccC-CcEEEEE--eCCCCccc-cc-cCCCCchhhhH
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP-GGYWILS--GPPVNWES-HW-KGWNRTTEDLK 340 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP-GG~Liis--~p~~~w~~-~~-~~W~~t~e~l~ 340 (636)
+. ...+..-.+-.||+|.|...| .-..++..+|+.+..+|+| +|.++++ -|-..|.. .. .-|.++.+-++
T Consensus 157 Vl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le 231 (288)
T KOG3987|consen 157 VL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLE 231 (288)
T ss_pred ee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHH
Confidence 32 222222234469999998888 4455889999999999999 8988876 35444544 21 22555533333
Q ss_pred -------HHHHHHHHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCccCCCcCCccc
Q 006662 341 -------SEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399 (636)
Q Consensus 341 -------~~~~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy 399 (636)
+....+-++.+..++. ...+. +.|++|++|..++.+|
T Consensus 232 ~~Gr~~ee~v~~~~e~lr~~g~~-----------------veawT-----rlPYLCEGDm~ns~Y~ 275 (288)
T KOG3987|consen 232 NNGRSFEEEVARFMELLRNCGYR-----------------VEAWT-----RLPYLCEGDMHNSFYW 275 (288)
T ss_pred hcCccHHHHHHHHHHHHHhcCch-----------------hhhhh-----cCCeecccccccceEE
Confidence 2222233333433332 23343 3499999887666555
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=92.44 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
......+.+.+.+.++. +|||||||+|.+++.|+.. + ..++++ |..+...+.|+++ +. ++.+..+|.
T Consensus 58 P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~v---E~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSV---ERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEE---ESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred HHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEE---CccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 34555677788888877 9999999999999999886 2 235556 7777777777654 33 678888886
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....-....||.|++..+....+ ..+.+.||+||++++-..
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred hhccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 54333456899999988773332 457778999999999743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-07 Score=91.34 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=75.8
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH-HcCC----------------CeEEEEeccccCCCCC-C
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERGV----------------PALIGVMASIRLPYPS-R 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~-erg~----------------~~~~~~~d~~~Lpf~~-~ 281 (636)
.+||..|||.|....+|+++|..++++ |+++.+++.+. +++. .+.+.++|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 389999999999999999999988888 99999999874 3331 2467778887766433 5
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+||+|+=..+|+-+.++. ..+.+.+.++|+|||.+++.
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 899999877786666555 88999999999999994443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=98.09 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=77.3
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCCCCCccceee
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~yp~t~Dl~H 544 (636)
.++..+.. .....|||+|||.|.++.+|.++.- ...|+.+|.++.++..+.++++ .+.+ |- +.+. ...+||+|+
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~-~~~~-~~~~fD~v~ 94 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDV-RDWK-PKPDTDVVV 94 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcCh-hhCC-CCCCceEEE
Confidence 34544554 4568999999999999999987610 1356777888899999999875 2222 21 2221 237899999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.+|-... +.+.+|.++-|+|||||++++..
T Consensus 95 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 988876443 45889999999999999999963
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=88.50 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=76.1
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+.+....+. +|||+|||+|.++..+++++..++.+ |+++.+++.++++. .++.+...|...+++++..
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~v---E~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAARVTAI---EIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEEE---ECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3455555555544 89999999999999999986666666 88888988887663 3577888899888888778
Q ss_pred eeEEEecccccccccChHHHHHHHHhc--ccCCcEEEEE
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRV--LRPGGYWILS 319 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~Rv--LKPGG~Liis 319 (636)
||.|+++.-+ +.. ...+..+.+. +.++|.+++.
T Consensus 78 ~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 9999997644 332 2334444332 4578888887
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=88.70 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEecccc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIR 275 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~ 275 (636)
.++.+++.+...+... ....+|||+|||+|.++..+++. +..++.+ |+++.+++.|+++. ....+...|...
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v---Dis~~al~~A~~N~~~~~~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAA---DIDPAAVRCARRNLADAGGTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 3455555555544321 12248999999999999999875 4455555 88999998887552 124566666543
Q ss_pred -CCC-CCCCeeEEEecccccccc---------------------cC----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 -LPY-PSRAFDMAHCSRCLIPWG---------------------QY----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 -Lpf-~~~sFDlV~~s~~L~h~~---------------------~d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
++- ..++||+|+++.-..... .+ ...++..+.++|+|||.+++...
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999976432110 01 13677778899999999999854
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=93.14 Aligned_cols=140 Identities=12% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
...++||.|+|.|+.+..++-.-...+++ ++..+..++.|++.. .-..+.....+....+.++||+|.+-+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 35689999999999999887664443333 467888888887432 22455556666665456799999999999
Q ss_pred cccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccc
Q 006662 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (636)
Q Consensus 293 ~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~ 361 (636)
.|+.++. -.+|+.+...|+|||.+++-..-..-.. ..+......+....+.+.++++..+++.+.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 9998655 7899999999999999999753111100 01223333333445667888999999888753
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=92.29 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=70.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
.+|||+|||+|.++..++.. +..++.+ |+++.+++.|+++ +. .+.+...|... ++++++||+|+++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~av---Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAV---DISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCC
Confidence 48999999999999999886 4556666 8999999888754 33 36777777533 234568999999732
Q ss_pred ccc------------ccc--------C----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIP------------WGQ--------Y----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h------------~~~--------d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
... +.+ + ...++.++.++|+|||++++...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 210 000 0 14678899999999999999743
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8e-07 Score=90.43 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=85.5
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEE
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
|++.+...++ ...|-|+|||.+.++. ..+ .+..+++.+ ++-.+...|+.++|.++++.|++
T Consensus 171 ii~~ik~r~~-~~vIaD~GCGEakiA~--~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDva 232 (325)
T KOG3045|consen 171 IIRKIKRRPK-NIVIADFGCGEAKIAS--SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVA 232 (325)
T ss_pred HHHHHHhCcC-ceEEEecccchhhhhh--ccccceeeeeeec---------------CCCceeeccccCCcCccCcccEE
Confidence 4444433333 3479999999998875 122 444443322 22346677899999999999999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccccc---
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD--- 363 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~~--- 363 (636)
++..+| +..+...++.|++|+|+|||.|+|..-...+. + ...+.+.+..+||........
T Consensus 233 V~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~-----------d----v~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 233 VFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSRFS-----------D----VKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred EeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhhcc-----------c----HHHHHHHHHHcCCeeeehhhhcce
Confidence 975555 45677899999999999999999986422211 1 223666778889976543322
Q ss_pred --EEEEeCCC
Q 006662 364 --LAIWQKPT 371 (636)
Q Consensus 364 --~aIWqKp~ 371 (636)
+..|+|+.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 34556654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.1e-07 Score=90.26 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
.++|||||+|.|.++..++++ +..++-+ |. +..++.+.+ ...+.+..+|.. -++|. +|+++..++||+|.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVF---DL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEE---E--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceee---cc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 358999999999999999987 5555544 55 455666655 567889988887 66776 99999999999998
Q ss_pred cCh-HHHHHHHHhcccCC--cEEEEEeC
Q 006662 297 QYD-GLYLIEVDRVLRPG--GYWILSGP 321 (636)
Q Consensus 297 ~d~-~~~L~el~RvLKPG--G~Liis~p 321 (636)
++. ..+|+++.+.|+|| |.++|...
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 665 78999999999999 99999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-07 Score=93.99 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCC-Cccceeeecccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
....+|||+|||.|.++..|.+.+. .|+.+|.++.++..+.++.- +.... |. +.+ ++| .+||+|-++..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESL-PLATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccC-cCCCCcEEEEEECchhhh
Confidence 4467899999999999999987653 56677887789998888753 11111 21 333 344 79999988655432
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
--+...+|.|+-|+|||||.++++.
T Consensus 116 ---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 ---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2356899999999999999999984
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-07 Score=84.72 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=71.0
Q ss_pred cceEeeecccchhhhhhhcC--CCeEEEEecCCCCCccchHHHHhhc----c---cchhh-ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVD--DPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~eRg----l---i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|++ ... .|+.+|.++.+++.+.++- + |..++ |+ +.....+..||+|.+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 35799999999999999998 444 4566677778888888775 2 33333 33 2224455679999998
Q ss_pred cccc--cCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFS--LYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+ |+ .+-+..+...+|-++.+.|||||+++|++
T Consensus 78 ~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 G-FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 43 22222456788999999999999999975
|
... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=97.49 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=77.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC--C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP--Y 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp--f 278 (636)
.+...+...++. +|||+|||+|..+..++++. ..++++ |+++.+++.++++ +..+.+...|...++ +
T Consensus 235 ~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~---D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 235 LAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVAL---DIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 444555555555 99999999999999999873 456666 8899888877644 455677777776654 3
Q ss_pred CCCCeeEEEecc----c--cc-----ccccCh----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSR----C--LI-----PWGQYD----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~----~--L~-----h~~~d~----------~~~L~el~RvLKPGG~Liis~p 321 (636)
..++||.|++.. . +. .|...+ ..++..+.++|||||++++++.
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 457899999422 1 10 121111 3689999999999999999974
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-07 Score=98.95 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=67.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccc---hhh-ccccccCCCC-Cccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG---TYQ-NWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~---~~~-~~ce~~~~yp-~t~Dl~H~~ 546 (636)
...+|||+|||.|+++.+|+++- ..+|+.+|.++.++..+.+ +|+.. ... |.. . .++| .+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~-~~~~~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-N-QPFEDGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-c-CCCCCCCccEEEEC
Confidence 45789999999999999998751 2355566666667765544 35522 111 222 1 2355 899999986
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..+.... +...+|.||-|+|||||.++|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6554333 46889999999999999999964
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=95.90 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc------cchhhc
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQN 528 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------i~~~~~ 528 (636)
+.|++.+..... + .....|||++||+|-++..|++.-----.|+.+|-+++||.++.+|-- |-....
T Consensus 33 ~~wr~~~~~~~~----~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG----L---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT---------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC----C---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 678876653221 2 335699999999999998887641112367777888899999998743 222222
Q ss_pred cccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 529 WCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 529 ~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
=.|.+ +|| .+||.|=+...+-. -.+.+..|-||-|||||||.++|-|
T Consensus 106 da~~l-p~~d~sfD~v~~~fglrn---~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDL-PFPDNSFDAVTCSFGLRN---FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHh-cCCCCceeEEEHHhhHHh---hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 22444 365 99999876444432 3567899999999999999999865
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=90.62 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=73.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||+|||+|.++..++.+ +..++.+ |+++.+++.++++...+.+...|...+. ..++||+|+++..+.+...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gV---Disp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCc
Confidence 48999999999999888775 3455666 8899999999887666788888877654 3468999999887755432
Q ss_pred Ch-------------------HHHHHHHHhcccCCcEEEEE
Q 006662 298 YD-------------------GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 298 d~-------------------~~~L~el~RvLKPGG~Liis 319 (636)
.. ..++..+.++|+|+|.+++.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 21 24667778899999987776
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=94.23 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
....+.+.+...++. +|||||||+|.++..+++.. ..++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 68 l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgV---Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSV---EYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 334555555555555 89999999999999998752 235556 7888888777643 33 46677777665
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+.....||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 5545568999998765522 2345678999999998864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=87.04 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred ccCcchhcchh--hHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh
Q 006662 442 VDGVTAEMFRE--DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE 519 (636)
Q Consensus 442 ~~~~~~~~f~~--d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e 519 (636)
.+|++.+.|.. +...|++.|+.-. +..+.. .....|||+|||.|.++..++..---.-.|+.+|.++.++..+.+
T Consensus 7 ~~~~~d~~~~~~~~~~~t~~~~r~~~--l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~ 83 (198)
T PRK00377 7 IPGIPDEEFERDEEIPMTKEEIRALA--LSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR 83 (198)
T ss_pred CCCCChHHHccCCCCCCCHHHHHHHH--HHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 45677777775 3457777775221 222333 346689999999999988764420001245556666667776544
Q ss_pred h----cccc---hhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHH
Q 006662 520 R----GLIG---TYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSI 590 (636)
Q Consensus 520 R----gli~---~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~ 590 (636)
+ |+.. ++. |..+.....+..||+|.+.+ ....++.+|-++.|+|+|||.+++. -..+.+.++.+.
T Consensus 84 n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 84 NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 3 4311 111 22222222346799877632 2245788999999999999999983 355677788888
Q ss_pred HhcCCCceEE
Q 006662 591 TDGMEWEGRI 600 (636)
Q Consensus 591 ~~~~~W~~~~ 600 (636)
++.+.++..+
T Consensus 158 l~~~g~~~~~ 167 (198)
T PRK00377 158 LENIGFNLEI 167 (198)
T ss_pred HHHcCCCeEE
Confidence 8777776553
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-06 Score=88.77 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc----------CCCeEEEEecccc-CCCCCCCee
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIR-LPYPSRAFD 284 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er----------g~~~~~~~~d~~~-Lpf~~~sFD 284 (636)
.+++||+||||.|..+.+++++ ++ .++.+ |+++.+++.|++. ...+.+...|... +....++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~V---Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLV---EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEE---eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3458999999999999999887 33 33344 7888888888753 2245677777544 233467899
Q ss_pred EEEecccccccccCh----HHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~ 320 (636)
+|++...- ++.... ..+++.+.+.|+|||.+++..
T Consensus 153 vIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99985432 332221 578899999999999999864
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-06 Score=86.48 Aligned_cols=112 Identities=8% Similarity=0.102 Sum_probs=74.5
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG------VPALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~ 274 (636)
.|.+.+...+... ..+++|||||||+|.++.++++. +..++.+ |+++++++.|++.. ..+.+...|..
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~V---Eidp~vi~~A~~~f~~~~~~~rv~v~~~Da~ 127 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAV---EINPQVIAVARNHFELPENGERFEVIEADGA 127 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHcCCCCCCCceEEEECCHH
Confidence 3444443333222 23458999999999999999876 3344444 88889999887652 24667777754
Q ss_pred c-CCCCCCCeeEEEecccccc--ccc--ChHHHHHHHHhcccCCcEEEEE
Q 006662 275 R-LPYPSRAFDMAHCSRCLIP--WGQ--YDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~-Lpf~~~sFDlV~~s~~L~h--~~~--d~~~~L~el~RvLKPGG~Liis 319 (636)
. +.-..++||+|++.. +.. ... ....+++++.++|+|||.+++.
T Consensus 128 ~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 128 EYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3 222246899999742 211 111 1268999999999999999996
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-07 Score=94.60 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=68.9
Q ss_pred CcceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCC-Cccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++..|.+. + .-..+|+.+|.++.++..+.++.- +.... |. +. .+++ .+||+|.+ +|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~-lp~~~~sfD~I~~--~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HR-LPFADQSLDAIIR--IYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-cc-CCCcCCceeEEEE--ecC
Confidence 3567999999999999988754 1 111367888988899999887742 11111 11 12 2455 79999986 232
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHH
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSI 590 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~ 590 (636)
+..+-|+.|+|+|||++|+.... ..+..++++
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 33468999999999999997543 234444443
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-06 Score=94.69 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=75.8
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEE--EEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALI--GVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~--~~~d~~~L 276 (636)
...+...+...++. +|||+|||+|..+..+++. +..++++ |+++.+++.++++ +..+.+ ..++....
T Consensus 227 s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~---D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 227 AQWVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVAL---DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 34555666555555 9999999999999999876 2455555 8888888777544 444333 44444433
Q ss_pred CC--CCCCeeEEEe----c--cccccccc-----C----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PY--PSRAFDMAHC----S--RCLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf--~~~sFDlV~~----s--~~L~h~~~-----d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ +.++||.|++ + .++.+.++ . ...+|.++.++|||||++++++.
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 43 4678999995 2 22322111 1 24789999999999999999975
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.5e-07 Score=96.34 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=65.4
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHH--HHhhcc-----cchhhccccccCCCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV--IYERGL-----IGTYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~--~~eRgl-----i~~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+.|||+|||.|.++.+|++.+- -.|+.+|.+..++.. +..+.+ +-+...=.+.++. +.+||+|+|.++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 357999999999999999987642 125666666444432 111211 1111100123333 789999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+. ++-+...+|.++-|+|||||.+||.
T Consensus 199 l~---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 199 LY---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hh---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 64 3446789999999999999999986
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=84.15 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=78.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhcccc-ccCCCCCccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCE-AMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce-~~~~yp~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++.++++.. --.+|+.+|.++.++..+.++ |+ .-+.-.+. ....++..||+|.+++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEECCCc-
Confidence 36689999999999998887641 013455566665667666542 33 11111111 223456789999886532
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCce
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~ 598 (636)
..++.++.++-|+|+|||++++.+ ..+...++.+++++..++.
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 357889999999999999999976 4566677888888877753
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=87.88 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=66.5
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||.|.++..|.+. +- .+|+.+|.+++++..+.++ ++ +.+++.=.+.+ ++| .+||+|++..
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEec
Confidence 578999999999999988764 11 2455566666777666554 22 12222111222 345 7999999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+.... +...+|-|+-|+|||||++++.+.
T Consensus 123 ~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 654333 457899999999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-07 Score=89.83 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=67.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccc-cCCCCCccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEA-MSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~-~~~yp~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|.++.+|++++ ..|..+|.++.++..+.+ .|+ .+....++. -..++.+||+|.+..+|..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence 3589999999999999999875 367777887778876543 344 111111111 1124578999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.. .-+++.++-++.|+|+|||++++
T Consensus 107 ~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 23678999999999999999555
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-07 Score=89.25 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=67.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH----hhcccc---hhhccccccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIG---TYQNWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgli~---~~~~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++.+|++++. +|..+|.++.++..+. ++|+-. ...|+.+ + +++.+||+|-+..+|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecch
Confidence 35899999999999999998853 6667777767776544 334411 1123221 1 246789999998776
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
-.. +.-+.+.++-+|.|+|||||++++
T Consensus 106 ~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 334578999999999999999655
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-07 Score=98.07 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.8
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccch-hhccccccCCCCCccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGT-YQNWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~-~~~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
....|||+|||.|+++..|++. ++ .|+.+|.++.++..+.+|.- +. +.-.+..+...+.+||+|.+.++|..-.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 3568999999999999999875 43 56777777789988888641 10 1111222233367899999988876432
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-..+.++-++.|+|+|||++++.+
T Consensus 243 -~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 243 -PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2346789999999999999999964
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.4e-07 Score=93.18 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=73.5
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHcC-----------CCeEEEEecc------ccCCCCCC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALERG-----------VPALIGVMAS------IRLPYPSR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~erg-----------~~~~~~~~d~------~~Lpf~~~ 281 (636)
..+||+|||-|.-+....+.++. .+++ |+.+..++.|++|. .++.|..+|. ..+++++.
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igi---DIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGI---DIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEee---ehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 37999999999888777776542 3344 77777777776552 2466777764 23455666
Q ss_pred CeeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|-|-+++|.-.... ..+|+++.+.|||||+||-+.|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 799999999995443333 5789999999999999999988
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=79.00 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=74.7
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYP 279 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~ 279 (636)
.....|...+++ +++|||||+|+.+..++.. ...++.+ |-++++++..+++ + .++.+..+++...--.
T Consensus 25 l~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AI---e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 25 LTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAI---ERDEEALELIERNAARFGVDNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEE---ecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC
Confidence 345555666666 9999999999999999943 4566677 6677777665433 3 3466766665433112
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+||.|+..... ..+.+++.+...|||||.+++..
T Consensus 100 ~~~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 100 LPSPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 2279999987753 44689999999999999999984
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=93.62 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH-Hhhcccc---hhhccc
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIG---TYQNWC 530 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgli~---~~~~~c 530 (636)
..|...+. |..++..++. ...++|||+|||.|.++.+|+..+. -.|+.+|.+..++..+ .-|.+++ -.+-..
T Consensus 102 ~e~~s~~~-~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred HHHHHHHH-HHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 35665554 3344544444 4468999999999999998887753 2456667665555432 1111111 111111
Q ss_pred cccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 531 EAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 531 e~~~~y--p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..+... +.+||+|-|.+++-. +-+...+|.|+.|+|||||.+|+.
T Consensus 178 ~~ie~lp~~~~FD~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLHELYAFDTVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCCCCCCcCEEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 112222 358999999887743 346789999999999999999986
|
Known examples to date are restricted to the proteobacteria. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-05 Score=81.71 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=81.6
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCCCccceeeeccccccC-
Q 006662 479 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY- 552 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~- 552 (636)
.|||+|||.|.++.++.++ +- ..|+.+|.+...+..+.+ .|+-+.+ .+...++..+..||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~-~~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEV-FASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEE-EEcccccccCCCccEEEECCCccCCc
Confidence 6999999999999999875 32 235556666566665543 3442222 2333444446899999998766321
Q ss_pred -CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 553 -KDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 553 -~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
.+.-..+.++.++-|.|+|||.++|--+. .+-..+++..... ++.. ++ ++-||+-++|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEcc
Confidence 11223578999999999999999886432 2344555555432 2222 11 35678877763
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.5e-07 Score=93.24 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=79.4
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH----hhcccchhhccccccCC--CCCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMST--YPRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgli~~~~~~ce~~~~--yp~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||.|.++.+|++.+. .|+.+|.++.++..+. +.|+ . ++--+..+.. .+..||+|-+..+|..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhh
Confidence 3899999999999999998764 5677787767776653 3455 1 1111222222 2689999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe---CH--------H---HHHHHHHHHhcCCCceEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD---DV--------D---ILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~--------~---~~~~~~~~~~~~~W~~~~~ 601 (636)
. ++-+++.++-+|.|+|+|||++++-. .. . .-..++++.+. |++..+
T Consensus 197 l-~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 L-NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 3 33467899999999999999966531 11 1 23556777766 888755
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-06 Score=93.13 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=77.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp 277 (636)
..+...+...++. +|||+|||+|..+..+++. ...++++ |+++.+++.++++ |. ++.+...|...++
T Consensus 242 ~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~---D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~ 316 (434)
T PRK14901 242 QLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAV---DRSASRLKKLQENAQRLGLKSIKILAADSRNLL 316 (434)
T ss_pred HHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEE---cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc
Confidence 3444555555555 8999999999999999876 2345555 8888888777543 43 4677777877665
Q ss_pred ----CCCCCeeEEEec------ccccccccC----------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ----YPSRAFDMAHCS------RCLIPWGQY----------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ----f~~~sFDlV~~s------~~L~h~~~d----------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+..++||.|++. .++.+. ++ ...+|.++.++|||||++++++.
T Consensus 317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~-p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 317 ELKPQWRGYFDRILLDAPCSGLGTLHRH-PDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cccccccccCCEEEEeCCCCcccccccC-cchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 446789999952 222111 11 24789999999999999999864
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.32 E-value=5e-07 Score=90.82 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=68.1
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----ccc---chhh-ccccccCCCCCccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli---~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
+.|||+|||.|+++..+++. +- .+|..+|.+++++..+.++ |+- ..+. |..+ .++|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~--~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK--DPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc--CCCCCCCCEeehHHH
Confidence 36999999999999988764 11 2445556666777766654 442 2222 2211 135689999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|.... +.+.+|-++.|+|+|||++++.+.
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76543 468999999999999999999864
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=85.69 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHH----hhcc--cchhh
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 527 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl--i~~~~ 527 (636)
+.|++++-.-..++..+. ..+|||+|||+|.++..|+.. +- ..|+.+|.++.++.++. +.|+ +-+++
T Consensus 25 ~~~~~~~~d~i~~~~~~~----~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD----GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHHHhcC----CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe
Confidence 467776643222233332 468999999999888876532 11 34566677766665543 3354 23333
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC-CceEE
Q 006662 528 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME-WEGRI 600 (636)
Q Consensus 528 ~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~-W~~~~ 600 (636)
.=.+.+ ....+||+|-+++ + ..+++++-++.|+|||||.+++.........+..+.+.++ |....
T Consensus 99 ~d~~~~-~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 99 GRAEDF-QHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred cchhhc-cccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 111222 2347999998855 1 3578899999999999999999987766677777665533 44443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=82.81 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=79.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccccCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG----V--PALIGVMASIRLP 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~~Lp 277 (636)
.|...+.+.+|+ +|||.|.|+|.++.+|+.. .-.++++ ++.+...+.|+++- . .+.+...|..+.-
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~ty---E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTY---EIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEE---EecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 456667778887 9999999999999999964 2345556 77888888887652 1 2566666765554
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++ .||+|+. .. ++|..++..+.++|+|||.+++-.|
T Consensus 160 ~~~-~vDav~L-----Dm-p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 160 DEE-DVDAVFL-----DL-PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ccc-ccCEEEE-----cC-CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 554 8999986 33 4888999999999999999999877
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.5e-07 Score=93.49 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc---hhhccccccCCC-CCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMSTY-PRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~---~~~~~ce~~~~y-p~t~Dl~H~~~~ 548 (636)
-.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+.. +++.-.+.+..+ +.+||+|.+.++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 46999999999999999998853 667778887888887765 4322 221111223334 489999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|.... +...+|-++-|+|||||.+++..
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 87543 44789999999999999998863
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-06 Score=85.13 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc-----CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+|||+|||+|.++..++++ ...++.+ |+++.+++.|+++...+.+...|....++ +++||+|+++--+..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aV---EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCV---ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEE---ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCC
Confidence 48999999999999988864 2344444 88999999998876667888888766554 468999999875532
Q ss_pred ccc----------C-hHHHHHHHHhcccCCcE
Q 006662 295 WGQ----------Y-DGLYLIEVDRVLRPGGY 315 (636)
Q Consensus 295 ~~~----------d-~~~~L~el~RvLKPGG~ 315 (636)
... . ...++..+.+++++|+.
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 210 1 13578888887777775
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-06 Score=94.48 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=73.4
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCC
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSR 281 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~ 281 (636)
.++...++. +|||+|||+|..+..+++. +..++++ |+++.+++.++++ +. ++.+...|...++ +++
T Consensus 244 ~~l~~~~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~av---D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 244 LLLNPQPGS--TVLDLCAAPGGKSTFMAELMQNRGQITAV---DRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEE 317 (445)
T ss_pred HhcCCCCCC--EEEEECCCCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCC
Confidence 344444444 8999999999998888764 3355566 8898888777543 44 3677777776654 557
Q ss_pred CeeEEEe----ccc--cc-----ccccC----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHC----SRC--LI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~----s~~--L~-----h~~~d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|++ +.. +. .|... ...+|.++.++|||||++++++.
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8999995 211 10 11111 13589999999999999999975
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.3e-07 Score=89.40 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=103.5
Q ss_pred hccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccC--CCCCccceeee
Q 006662 469 YQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMS--TYPRTYDLIHA 545 (636)
Q Consensus 469 ~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~--~yp~t~Dl~H~ 545 (636)
..... +..|.+||+|||+|-+|-+|.++ +--+..+|.+.|||..+.|+|++-++. .=...|+ .=++-||||-+
T Consensus 119 ~~~~~-g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 119 GKADL-GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HhccC-CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 33455 66999999999999999999775 223466789999999999999976443 2123466 34789999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCceEEe-----ccC
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIA-----DHE 604 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~-----~~e 604 (636)
.-||+... .++.+|.-.++.|.|||.|+|+... .--..|..+.++-.-++..+ -.+
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 89988654 4599999999999999999998210 02245666666666665422 123
Q ss_pred CCCCCcceEEEEEec
Q 006662 605 NGPRQREKILFANKK 619 (636)
Q Consensus 605 ~~~~~~~~~l~~~K~ 619 (636)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 333356777777775
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=93.93 Aligned_cols=97 Identities=12% Similarity=0.198 Sum_probs=72.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhhccc---cccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWC---EAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~~~c---e~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++..|+..+. +|..+|.+..++.++.++. +..-+.-.| +.+...+++||+|=|.+++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999987653 6778888888999888662 211111122 3333234799999997777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +.+.+|-|+-|+|||||.++|.+
T Consensus 209 eHv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6444 56899999999999999999985
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-06 Score=91.44 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP- 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp- 277 (636)
.+..++...++. +|||+|||+|..+.++++. +..++++ |+++.+++.++++ +. .+.+...|...++
T Consensus 228 ~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~---Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 228 IVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAV---DISREKIQLVEKHAKRLKLSSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh
Confidence 344445545555 8999999999999988875 3455566 8899998887644 43 3567777877665
Q ss_pred CCCCCeeEEEecc-c--ccccccC------------------hHHHHHHHHhcccCCcEEEEEeCC
Q 006662 278 YPSRAFDMAHCSR-C--LIPWGQY------------------DGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 278 f~~~sFDlV~~s~-~--L~h~~~d------------------~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+..++||.|++.. | +..+..+ ...+|.++.+.|||||++++++..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 4567899999621 1 1011111 145688999999999999999753
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=89.00 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=82.2
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCC--CCCccceee
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMST--YPRTYDLIH 544 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~--yp~t~Dl~H 544 (636)
+..+.. ....+|||+|||.|.++..|++.. =.-+|+.+|.++.++..+.++-- +.+.. ..+.. .+.+||+|+
T Consensus 24 l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 24 LARVPL-ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLIF 98 (258)
T ss_pred HhhCCC-cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEEE
Confidence 333444 446899999999999999987651 01356777777788888876621 11211 11112 237999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHHHHHHhcCCCceEE
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD--V--DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~~~~~~~~~W~~~~ 600 (636)
++..|.... +...+|.++-|+|||||.+++.-. . .....+++++....|....
T Consensus 99 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 155 (258)
T PRK01683 99 ANASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNL 155 (258)
T ss_pred EccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHh
Confidence 988775433 467899999999999999999631 1 1223455666666665543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=89.71 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=79.3
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhhccccccCCC-CCccceeeeccccccC
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY-PRTYDLIHADSIFSLY 552 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~~~ce~~~~y-p~t~Dl~H~~~~fs~~ 552 (636)
.+|||+|||.|.++.++++.+. -.|+.+|.++.++..+.++.- -......+.....+ +..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6899999999999888877653 356777877778877766532 11122222223333 47899999965432
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEe
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 601 (636)
.+..++-++-|+|||||+++++.- .+....+.+.+++. |+....
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 245789999999999999999864 34556677766665 766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-06 Score=87.59 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=73.0
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCC
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRA 282 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~s 282 (636)
.+...++. +|||+|||+|..+..+++. ...++++ |+++.+++.++++ +. ++.+...|...++...+.
T Consensus 66 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~---D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 66 ALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVAN---EFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEEE---cCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccC
Confidence 34444554 8999999999999998875 2345555 8898888777543 33 456777776666555567
Q ss_pred eeEEEec----c--cccc-------ccc--------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCS----R--CLIP-------WGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s----~--~L~h-------~~~--------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||.|++. . ++.+ +.+ ....+|.++.++|||||+++.++.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9999962 1 1100 110 113589999999999999999975
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.7e-06 Score=91.22 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
++..++.+.+.+...++. +|||+|||+|.++..|++....++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 282 ~e~l~~~vl~~l~~~~~~--~VLDlgcGtG~~sl~la~~~~~V~gv---D~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPGD--RVLDLFCGLGNFTLPLARQAAEVVGV---EGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCCC--EEEEEeccCCHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 455666666666554544 89999999999999999987666677 8999999888754 33 47788887643
Q ss_pred ----CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 ----LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 ----Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++.+++||+|++..-. . .....+..+.+ ++|++.++++..
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr---~-g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPR---A-GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCC---c-ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 33556789999986533 2 12345555555 699999999954
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.5e-06 Score=88.36 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc------------CCCeEEEEecccc-CCCCCC
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER------------GVPALIGVMASIR-LPYPSR 281 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er------------g~~~~~~~~d~~~-Lpf~~~ 281 (636)
..+++||+||||+|..+..+++.. ..++.+ |+++++++.|++. ...+.+...|... +.-..+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~V---EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLV---DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEE---eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345699999999999999888863 233333 8889999998851 2356777777654 334457
Q ss_pred CeeEEEeccccccccc-----ChHHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQ-----YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~-----d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.||+|++... .+... ....+++.+.+.|+|||.+++..
T Consensus 226 ~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 8999998632 12110 11568999999999999998874
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-06 Score=85.58 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=70.7
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh--cccchhhccccccC--CCC-Cccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGTYQNWCEAMS--TYP-RTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gli~~~~~~ce~~~--~yp-~t~Dl~H~~~~f 549 (636)
....+|||+|||.|.++..+++.--=.-+++.+|.++.++..+.++ +.....+-.+..+. .++ .+||+||+..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3467899999999999998876410012566667777788888877 22111111111111 244 799999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +.+.++-++-|+|+|||++++.+
T Consensus 98 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 6544 46889999999999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.22 E-value=5e-06 Score=81.02 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=83.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||.|.++..+.+..- .|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4699999999999999988753 566777776777766553 22 12222 3322 23579999988655421
Q ss_pred CC------------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCceEEeccC
Q 006662 552 YK------------------DRCEMEDVLLEMDRILRPEGSVIIRDDVDI-LVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 552 ~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~~e 604 (636)
.. .+..++.+|-++.|+|+|||.+++.+.... ...+.+.++...++.++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 11 122367899999999999999999865544 667777888888888765433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.6e-06 Score=81.51 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=67.1
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcC-CCeEEEEecccc-CC--CCCCCeeEEEecc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERG-VPALIGVMASIR-LP--YPSRAFDMAHCSR 290 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg-~~~~~~~~d~~~-Lp--f~~~sFDlV~~s~ 290 (636)
.+||||||.|.+...+|.. +...+++ |+....+..+. +.+ .++.+..+|+.. ++ ++++++|.|+.++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGi---E~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGI---EIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEE---ES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEE---ecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 8999999999999999987 4555566 66666655543 233 468888888765 32 5679999999866
Q ss_pred cccccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
.= +|.... ..++..+.++|+|||.+.+.+
T Consensus 97 PD-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 PD-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 44 565322 479999999999999999984
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-05 Score=81.11 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=66.6
Q ss_pred EEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
+|||+|||+|..+..++.... .++++ |+|+.+++.|+++ +. ++.+...+. -.+. .+.||+|+||--..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~---Dis~~Al~~A~~Na~~~~l~~~~~~~~dl-f~~~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAV---DISPDALALARENAERNGLVRVLVVQSDL-FEPL-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEE---ECCHHHHHHHHHHHHHcCCccEEEEeeec-cccc-CCceeEEEeCCCCC
Confidence 799999999999999999854 55666 9999999888755 32 222332221 1122 24899999976443
Q ss_pred ccc----------cCh--------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWG----------QYD--------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~----------~d~--------------~~~L~el~RvLKPGG~Liis~p 321 (636)
+-. .+| ..++.++.+.|+|||.+++..-
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 332 011 2578889999999999999843
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=86.20 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS 534 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~ 534 (636)
..|++.+..... ..+.. ..+|||+|||+|-++.+|.+.. --+|+.+|.+++++..+.+++ ..++.-.+.+
T Consensus 35 ~~wr~~~~~~l~--~~~~~---~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l- 104 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR---PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEAL- 104 (226)
T ss_pred HHHHHHHHHHHH--HhcCC---CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhC-
Confidence 568776543221 11222 4689999999999999998772 237888999999999998874 2233333444
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCc
Q 006662 535 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEG 573 (636)
Q Consensus 535 ~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG 573 (636)
+|| .+||+|-+...+- +--+.+..|-||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l~---~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALH---ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhh---ccCCHHHHHHHHHHHhcCce
Confidence 455 8999999855442 34577999999999999954
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=92.77 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=75.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp 277 (636)
..+...+...++. +|||+|||+|..+..+++. ...++.+ |+++.+++.++++ +. ++.+...|...++
T Consensus 240 ~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~av---Di~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 240 MLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVAL---DIHEHKLKLIEENAKRLGLTNIETKALDARKVH 314 (444)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 3455555555554 8999999999999999875 3455556 8888888777643 33 3677777776553
Q ss_pred --CCCCCeeEEEeccc------ccc-----cccC----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 --YPSRAFDMAHCSRC------LIP-----WGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 --f~~~sFDlV~~s~~------L~h-----~~~d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ ++||+|++..- +.+ |... ...++.++.++|||||.+++++.
T Consensus 315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 33 78999997421 100 1111 13579999999999999998864
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-05 Score=82.57 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDM 285 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDl 285 (636)
.+++||+||||+|.++..+++.. . .++.+ |+++.+++.+++.. ..+.+...|... +....++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~v---eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLV---DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEE---eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 34599999999999999988764 2 23333 77888887776532 234455545422 1222468999
Q ss_pred EEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
|++.... +.... ...+++.+.++|+|||.+++..
T Consensus 149 Ii~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9986542 22211 2578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.3e-06 Score=81.01 Aligned_cols=120 Identities=21% Similarity=0.286 Sum_probs=69.5
Q ss_pred HHHHHHHH-Hhhcc-CCCCCcEEEEeCCCCc----HHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc--------C
Q 006662 202 DAYIDDIG-KLINL-KDGSIRTAIDTGCGVA----SWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------G 263 (636)
Q Consensus 202 ~~~id~L~-~lL~l-~~g~~r~VLDIGCGtG----~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er--------g 263 (636)
+.+.+.+. .++.. ..+...+|+..||++| +++..|.+. ...-+.|.+.|++..+++.|++- +
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 44444444 33322 2335568999999999 455555551 11123455559999999998631 0
Q ss_pred -------------------------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEE
Q 006662 264 -------------------------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 264 -------------------------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Li 317 (636)
..+.|...+....+.+.+.||+|+|-++|+++.+.. ..++..+.+.|+|||+|+
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~ 172 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF 172 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence 125667777666344567899999999998886544 789999999999999999
Q ss_pred EEeC
Q 006662 318 LSGP 321 (636)
Q Consensus 318 is~p 321 (636)
+...
T Consensus 173 lG~s 176 (196)
T PF01739_consen 173 LGHS 176 (196)
T ss_dssp E-TT
T ss_pred EecC
Confidence 9843
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-06 Score=88.89 Aligned_cols=103 Identities=8% Similarity=0.113 Sum_probs=69.8
Q ss_pred cceEeeecccchhhhhhhcCCCeE-EEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLW-VMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~-~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
..+|||+|||.|.+...|+++-.. -.+++.+|.+++++..+.++ +...-++--+..+..+| ..+|++.+..++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 568999999999999888764100 13567777777888888765 22111111123444444 5689988877665
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.... -+...+|-++.|+|+|||.++++|.
T Consensus 134 ~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 134 FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4332 1357899999999999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=7e-06 Score=79.64 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=87.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----c-----ccchhhccccccCCCC-Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----G-----LIGTYQNWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----g-----li~~~~~~ce~~~~yp-~t~Dl~H~~ 546 (636)
..+|||+|||.|.++..|++++ -+|..+|.++.++..+.++ | +.-..+|+.+ .++ ..||+|=++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEEC
Confidence 5689999999999999998874 4667777776777776432 2 2222334444 334 589998665
Q ss_pred cccccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEeccCCCC
Q 006662 547 SIFSLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGP 607 (636)
Q Consensus 547 ~~fs~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~ 607 (636)
.-|.... ....++.++-++.|+|+|||.+++-.. ......+.+++....|+......+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 5443210 122356789999999999999887533 223567778888888876644333333
Q ss_pred CCcceEEEEEe
Q 006662 608 RQREKILFANK 618 (636)
Q Consensus 608 ~~~~~~l~~~K 618 (636)
+..-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 33334444443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.8e-06 Score=83.54 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=83.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC--CccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp--~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|..+.++.+.+. -.|+.+|.++.++..+.++.-..-.. ..+.... .+||+|.|+-+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~~~~~fD~Vvani~~----- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQGDLKADVIVANILA----- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEccCCCCcCEEEEcCcH-----
Confidence 57899999999999888877653 23667777767777776652110000 1111111 279999885321
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
-.+..++-++.|+|||||++|+++-. +....+.+.++...+.......+ +.-..++++|+
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 12457888999999999999999743 45677788888888887654333 23445566653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=84.22 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L 276 (636)
+.+++.+.+++...++ .+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +. ++.+..+|...+
T Consensus 159 ~~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~~~V~gv---D~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~ 233 (315)
T PRK03522 159 AQLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPGMQLTGI---EISAEAIACAKQSAAELGLTNVQFQALDSTQF 233 (315)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence 3444445555543333 489999999999999999988777777 8899999887644 44 478888887665
Q ss_pred CC-CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 277 PY-PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 277 pf-~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.. ..+.||+|++..-. ..-...++ ++...++|++.++++..|
T Consensus 234 ~~~~~~~~D~Vv~dPPr---~G~~~~~~-~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 234 ATAQGEVPDLVLVNPPR---RGIGKELC-DYLSQMAPRFILYSSCNA 276 (315)
T ss_pred HHhcCCCCeEEEECCCC---CCccHHHH-HHHHHcCCCeEEEEECCc
Confidence 42 34579999987432 11112333 334447889988888543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=81.31 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=71.6
Q ss_pred EEEEeCCCCcHHHHHHhhcC----CEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEecccc
Q 006662 221 TAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRCL 292 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~----v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lp---f~~~sFDlV~~s~~L 292 (636)
.+||||||.|.+...+|+++ +.++++.. ..-..+++.+.+.++ ++.+...|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~-~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV-PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh-HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 79999999999999999983 34443322 112233444556678 8888888865542 455699999987754
Q ss_pred cccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 293 IPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 293 ~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+... ..++..+.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 776433 369999999999999999985
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-06 Score=88.07 Aligned_cols=101 Identities=8% Similarity=0.130 Sum_probs=70.1
Q ss_pred cceEeeecccchhhhhhhcC---CCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||+|..+.+|++ .+- ..|+.+|.++.++..+.++ |+..-+.-.+..+...| ..||+|-++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45799999999999888765 232 3567778887899888776 33211211233444444 46898877655
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+.... .-+...++-|+.|+|+|||.+++.|.
T Consensus 135 l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 55433 23467899999999999999999873
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=88.92 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc------------CCCeEEEEecccc-CCCCCCC
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER------------GVPALIGVMASIR-LPYPSRA 282 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er------------g~~~~~~~~d~~~-Lpf~~~s 282 (636)
..++|||||||+|..+.+++++. ..++.+ |+++++++.++++ .+.+.+...|..+ +...+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~V---Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLV---DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEE---ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 34589999999999999998873 244444 8899999999872 1346677777654 2233568
Q ss_pred eeEEEecccccccccCh-----HHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~-----~~~L~el~RvLKPGG~Liis~ 320 (636)
||+|++.... +..+.. ..+++.+.+.|||||.+++..
T Consensus 374 fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999996433 332211 468899999999999999875
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.8e-05 Score=76.11 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=75.4
Q ss_pred cccHHHHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEE
Q 006662 198 PRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV-PALIGV 270 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~ 270 (636)
....+...+.+.+.+.. ..+. +|||+|||+|.++..++.++ ..++.+ |.++.+++.++++ +. ++.+..
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~--~vLDl~~GsG~l~l~~lsr~a~~V~~v---E~~~~a~~~a~~Nl~~~~~~~v~~~~ 108 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDA--RCLDCFAGSGALGLEALSRYAAGATLL---EMDRAVAQQLIKNLATLKAGNARVVN 108 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCC--EEEEcCCCccHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44556666666666532 3343 89999999999998765553 445555 7788887776543 32 466777
Q ss_pred ecccc-CCCCCCCeeEEEecccccccccC-hHHHHHHHHh--cccCCcEEEEEeC
Q 006662 271 MASIR-LPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDR--VLRPGGYWILSGP 321 (636)
Q Consensus 271 ~d~~~-Lpf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~R--vLKPGG~Liis~p 321 (636)
.|... ++...++||+|++.--+ ... ...++..+.. +|+|+|.++++.+
T Consensus 109 ~D~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 109 TNALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred chHHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 77544 22234579999998743 222 2455555554 4899999999865
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=79.06 Aligned_cols=142 Identities=20% Similarity=0.307 Sum_probs=90.2
Q ss_pred ccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccc-cccCCC-C-Cccceeee
Q 006662 470 QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWC-EAMSTY-P-RTYDLIHA 545 (636)
Q Consensus 470 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~c-e~~~~y-p-~t~Dl~H~ 545 (636)
.|.. .+++++|++|||.|-|-+.|+.+ .-.++.+|.+..-+..+.+|=- +.-| .|- ..++.+ | .+|||||+
T Consensus 38 aLp~-~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 38 ALPR-RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA-GLPHVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HHTT-SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT-T-SSEEEEES-TTT---SS-EEEEEE
T ss_pred hcCc-cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC-CCCCeEEEECcCCCCCCCCCeeEEEE
Confidence 3666 89999999999999999999987 2345555665567777776532 2112 333 233333 5 99999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCceEEeccCCCCCCcceEEE
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRIADHENGPRQREKILF 615 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~ 615 (636)
..|+-...+.-++..++-.+...|+|||.+|+-.-.+ --+.|.++++..-=++.-..-..++ ..|.-|+
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 191 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLL 191 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEe
Confidence 9999888777678889999999999999999964322 2255666655555455443333233 4566665
Q ss_pred EE
Q 006662 616 AN 617 (636)
Q Consensus 616 ~~ 617 (636)
++
T Consensus 192 ~~ 193 (201)
T PF05401_consen 192 AR 193 (201)
T ss_dssp EE
T ss_pred ee
Confidence 53
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.4e-06 Score=83.40 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=83.8
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-C-CCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-Y-PRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-y-p~t~Dl~H~ 545 (636)
.-.+|||+|||.|.+...|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |+.+.+.. + +.+||+|-+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3578999999999999998764 21 3566677776777777653 33 22233 33233432 5 488999876
Q ss_pred ccccc-----cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCceEE
Q 006662 546 DSIFS-----LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 546 ~~~fs-----~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
+.... ....+...+.+|-++.|+|+|||.++|. +.......+.+.+..-.|.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 42221 1122234688999999999999999996 6667777888877777787764
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.2e-05 Score=79.03 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHH---HHHHc----C---------
Q 006662 202 DAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQ---FALER----G--------- 263 (636)
Q Consensus 202 ~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~---~A~er----g--------- 263 (636)
...++.|.+.++. ......+||--|||.|+++..++.+|..+.+. +.|--|+- +.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gn---E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGN---EFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEE---EchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 3445556665542 22234589999999999999999998766555 66666542 22211 0
Q ss_pred -----------------------------CCeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHhccc
Q 006662 264 -----------------------------VPALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR 311 (636)
Q Consensus 264 -----------------------------~~~~~~~~d~~~Lpf~~---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 311 (636)
.......+|......++ ++||+|++.+.+ .-..+.-.++..+.++||
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLK 193 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhc
Confidence 01222333333333233 689999987655 555566889999999999
Q ss_pred CCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecccc
Q 006662 312 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 362 (636)
Q Consensus 312 PGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~ 362 (636)
|||++|=.+|-........ ......++-.++++..+++.++|+.+.+..
T Consensus 194 pgG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999988888332211110 122234666788999999999999876544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=84.69 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC--CCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL--PYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L--pf~~~sFDlV 286 (636)
+++||+||||.|..+.++++. .+. .++..|+++.+++.+++.. ..+.+...|.... ..+++.||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~--~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVE--QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 468999999999999999987 221 2222377778888876542 3466777775322 1235689999
Q ss_pred EecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
++-..- ++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 984322 33221 1468999999999999998753
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.7e-05 Score=77.94 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
..|...+.+.+|+ +|||.|.|+|.++.+|++. .-.+.++ |.++...+.|+++ +. .+.+...|....
T Consensus 30 ~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~---E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 30 SYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTY---EFREDRAEKARKNFERHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp HHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred HHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEcc---ccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence 3566777888888 9999999999999999975 2356667 8899988888754 33 477888887654
Q ss_pred CCC---CCCeeEEEecccccccccChHHHHHHHHhcc-cCCcEEEEEeC
Q 006662 277 PYP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL-RPGGYWILSGP 321 (636)
Q Consensus 277 pf~---~~sFDlV~~s~~L~h~~~d~~~~L~el~RvL-KPGG~Liis~p 321 (636)
-|. ++.||.|+. .+ ++|..++..+.++| ||||.+++-.|
T Consensus 105 g~~~~~~~~~DavfL-----Dl-p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 105 GFDEELESDFDAVFL-----DL-PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp --STT-TTSEEEEEE-----ES-SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccccccCcccEEEE-----eC-CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 443 367999976 33 36778999999999 99999999887
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.9e-05 Score=76.48 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=75.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeE-EEEeccccC-----CCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRL-----PYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~-~~~~d~~~L-----pf~~~sFDlV~~s~~ 291 (636)
..++||+|||+|.|+..+++++. .++++ |++..|+....+....+. +...+...+ +..-..+|+++++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~av---D~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGV---DVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEE---eCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 34899999999999999999864 45566 888877776544443322 233333322 212236787777654
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeCCCCcccc-----ccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH-----WKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~-----~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
+ .+..+.+.|+| |.+++..-| ++... .++--++........+.+...+..++|+.+
T Consensus 153 ~---------~l~~i~~~l~~-~~~~~L~KP-qFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 153 S---------ILPELDLLLNP-NDLTLLFKP-QFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred h---------HHHHHHHHhCc-CeEEEEcCh-HhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 4 47889999999 777765321 22111 112222334444555566666667777644
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.5e-06 Score=81.72 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=68.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cchhh-ccccccCCCCCccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
..+|||+|||.|.+..+|++..- ...++.+|.++.++..+.++.- +-.+. |. +.++..+.+||+|.+.+++...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc-
Confidence 46899999999999999987531 1234556666667777766542 11111 21 2333334899999998776533
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+...+|-++.|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 356899999999999999999974
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=79.32 Aligned_cols=144 Identities=14% Similarity=0.169 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----C---CCeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G---VPALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g---~~~~~~~~d~ 273 (636)
+.+.+.+.+.-..+...+.+|||...|-|.+++..+++|. .++.+ +.++..++.|.-+ + ..+.+..+|+
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD~ 194 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGDA 194 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEecccH
Confidence 4444444443333343445999999999999999999987 66666 5555666666422 1 1356666776
Q ss_pred ccC--CCCCCCeeEEEecccccccccC--hHHHHHHHHhcccCCcEEEEEe--CCCCccccccCCCCchhhhHHHHHHHH
Q 006662 274 IRL--PYPSRAFDMAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWILSG--PPVNWESHWKGWNRTTEDLKSEQNGIE 347 (636)
Q Consensus 274 ~~L--pf~~~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~Liis~--p~~~w~~~~~~W~~t~e~l~~~~~~ie 347 (636)
.++ .|++.+||+|+--.--...... -+.+.+|++|+|||||.++--. |...+.. ...+..+.
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG------------~d~~~gVa 262 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG------------LDLPKGVA 262 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc------------CChhHHHH
Confidence 543 4889999999852211111111 2689999999999999998764 2222211 11344566
Q ss_pred HHHHHhceEeecc
Q 006662 348 TIARSLCWKKLIQ 360 (636)
Q Consensus 348 ~la~~l~Wk~v~~ 360 (636)
+..++.+|.++..
T Consensus 263 ~RLr~vGF~~v~~ 275 (287)
T COG2521 263 ERLRRVGFEVVKK 275 (287)
T ss_pred HHHHhcCceeeee
Confidence 7778889986654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-05 Score=82.31 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCc----HHHHHHhhcC-C--EEEEcCcCCchHHHHHHHHHc--------CC-------------------
Q 006662 219 IRTAIDTGCGVA----SWGAYLMSRN-I--LAVSFAPRDTHEAQVQFALER--------GV------------------- 264 (636)
Q Consensus 219 ~r~VLDIGCGtG----~~a~~La~~~-v--~vv~i~p~Dis~a~l~~A~er--------g~------------------- 264 (636)
..+|+..||.+| +++..+.+.. . .-+.|.+.|++..+++.|++- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4455454431 0 012344459999999988632 00
Q ss_pred ---------CeEEEEeccccCCCC-CCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 265 ---------PALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 265 ---------~~~~~~~d~~~Lpf~-~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
.+.|...+....+++ .+.||+|+|.++++|+.... ..++..+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 134555555554443 57899999999998886443 789999999999999988764
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=80.14 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcCCC---eEEE-----------------------
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVP---ALIG----------------------- 269 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg~~---~~~~----------------------- 269 (636)
....+|||||-.|.++..+++. + -.++++ ||.+..++.|++.... ....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGv---DID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGV---DIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEe---eccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4458999999999999999987 2 234445 7788888888754210 0000
Q ss_pred ------------------Eecc-ccCCCCCCCeeEEEecccc----cccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 270 ------------------VMAS-IRLPYPSRAFDMAHCSRCL----IPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 270 ------------------~~d~-~~Lpf~~~sFDlV~~s~~L----~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+++. +-+.+....||+|+|..+- ..|.++. ..+++.+.++|.|||+|++.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 0112334679999984322 2444444 78999999999999999987
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=84.16 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=85.2
Q ss_pred hcchhhHHHHHHHHHHHHHh-hhccCCCCCcceEeeecccchh----hhhhhcCC----CeEEEEecCCCCCccchHHHH
Q 006662 448 EMFREDTALWKKRVTYYKSV-DYQLAQPGRYRNLLDMNAYLGG----FAAALVDD----PLWVMNTVPVEAKINTLGVIY 518 (636)
Q Consensus 448 ~~f~~d~~~w~~~v~~y~~~-~~~l~~~~~~r~vlD~~~g~gg----faa~l~~~----~v~~mnv~~~~~~~~~l~~~~ 518 (636)
..|-.|...|..-.+..... +..... ++.-+|+|+|||+|- .|-.|.+. .-|...|+.+|.++.+|..+.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~-~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRH-GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCC-CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 44777778888765543322 221122 345789999999994 55555442 124568899999988998887
Q ss_pred hhcccc-----------------------------------hhhccccccCCCC-CccceeeeccccccCCCCcCHHHHH
Q 006662 519 ERGLIG-----------------------------------TYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVL 562 (636)
Q Consensus 519 eRgli~-----------------------------------~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l 562 (636)
+ |+.+ ..||..+ ..+| ..||+|.|..+|.... .-....++
T Consensus 150 ~-~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l 225 (264)
T smart00138 150 A-GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLL 225 (264)
T ss_pred c-CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHH
Confidence 5 3211 1123222 1233 8899999988876543 23456899
Q ss_pred HHHhhcccCCcEEEEEeCH
Q 006662 563 LEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 563 ~e~dRiLrPgG~~i~~d~~ 581 (636)
-++-|+|+|||++++....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHhCCCeEEEEECcc
Confidence 9999999999999997544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.4e-05 Score=79.01 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=66.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-----CCCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-----YPSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-----f~~~sFD 284 (636)
++|||+|||+|.-+..++.. +..++.+ |+++.+++.|+++ +. .+.+..++..+. + .+.++||
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~ti---D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAI---DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 38999999999988777764 3455666 7788888777644 33 366777665442 1 1246899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-.. .+....++..+.++|||||.+++..
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9987431 1223678999999999999998864
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=7e-06 Score=85.26 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=64.7
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||.|..+..+++. +- ...|+.+|.++.++..+.++ |+ +-.++ |. +.+ ++| .+||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEcC
Confidence 569999999998765444322 10 01355567666788888765 32 11111 11 222 344 7999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.... +.+.+|-|+-|+|||||.+++.|
T Consensus 155 v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 775433 56889999999999999999975
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=85.99 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
...+.+.+.+++...++. +|||+|||+|.++..|++....++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 277 ~~~l~~~~~~~l~~~~~~--~vLDl~cG~G~~sl~la~~~~~V~~v---E~~~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEE--LVVDAYCGVGTFTLPLAKQAKSVVGI---EVVPESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCC--EEEEcCCCcCHHHHHHHHhCCEEEEE---EcCHHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 334455566655444444 89999999999999999886666677 8889998888754 33 57788887654
Q ss_pred C----CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 L----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 L----pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. ++.+++||+|+....- ..-...++..+.+ |+|++.++++.
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 2 2345679999975432 1112456666554 89999888873
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=83.74 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=82.1
Q ss_pred HHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHH----Hhhcccchhhcccccc
Q 006662 459 KRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAM 533 (636)
Q Consensus 459 ~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgli~~~~~~ce~~ 533 (636)
.+...+..++..+.= ...-+|||+|||-|+.+-+++++ +| ||+.++.+++|+..+ .++|+-.-.+.--+..
T Consensus 56 AQ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~ 131 (283)
T COG2230 56 AQRAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence 334444444443333 33789999999999999999887 56 666667777777654 5578854333222334
Q ss_pred CCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 534 STYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 534 ~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..++..||-|-+.|+|..... -..++++--+.++|+|||.+++-
T Consensus 132 rd~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 132 RDFEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cccccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 455555999999999986554 36789999999999999999985
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.3e-06 Score=78.04 Aligned_cols=99 Identities=22% Similarity=0.355 Sum_probs=73.0
Q ss_pred CcceEeeecccchhhhhhhcC-C--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CCCccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVD-D--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~-~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp~t~Dl~H 544 (636)
+.-+|||+|||+|-+.-.|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ ++. |+..||+|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEE
Confidence 356899999999999999983 2 23 366678888899888884 55 23333 3323 221 458999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+.++| .+-.+.+.+|-+|-|.|+|||.+++++..
T Consensus 79 ~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98888 34456678999999999999999998765
|
... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=79.03 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--c
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--I 523 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i 523 (636)
|....+.=..++......+..........+|||+|||.|.++..|.+... .++.+|.++.++..+.++ |+ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44443333334444444443221112356899999999999998877643 355666665666666553 22 2
Q ss_pred chhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 524 GTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 524 ~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +..+.....|.+||+|.+.+++... .+...+|-++.++|+|||.+++++
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 2222 1111111225789999997776543 356889999999999999999975
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=81.54 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=64.1
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPS 280 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf~~ 280 (636)
..++.+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.++++. .++.+..+|...+++++
T Consensus 29 ~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~av---E~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAAKVTAV---EIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCCcEEEE---ECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 3556677766655554 89999999999999999986666666 88889999887654 46788888988887664
Q ss_pred CCeeEEEeccc
Q 006662 281 RAFDMAHCSRC 291 (636)
Q Consensus 281 ~sFDlV~~s~~ 291 (636)
-.+|.|+++.-
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 33588888753
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-06 Score=73.75 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=52.4
Q ss_pred eeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc--hhhccc-cccCCCC-CccceeeeccccccC
Q 006662 481 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG--TYQNWC-EAMSTYP-RTYDLIHADSIFSLY 552 (636)
Q Consensus 481 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~--~~~~~c-e~~~~yp-~t~Dl~H~~~~fs~~ 552 (636)
||+|||.|.+..+|.+.- -...++.+|.++.++..+.+| +.-. ...--. +.+...+ .+||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998762 235666777777788444443 2100 111001 2233333 599999999999876
Q ss_pred CCCcCHHHHHHHHhhcccCCcEE
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSV 575 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~ 575 (636)
-+++.+|-.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=77.60 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
...+|||+|||.|.+..++.+..--.-.++.+|.++..+..+.++.- +-.++ |..+ .. ++ .+||+|++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CC-CCCCcEEEEEEeeee
Confidence 46799999999999999887652100245555655567777776642 12222 2111 12 33 689999987666
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.. -.+...+|.++.++|+|||++++.+
T Consensus 117 ~~---~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN---VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC---cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 3457899999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=79.04 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+...++. +|||||||+|.++..+++++..++.+ |+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~~v~~v---Eid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRAKKVYAI---ELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 34556677766655554 89999999999999999987666666 88889988887653 357888888888776
Q ss_pred CCCCeeEEEecccc
Q 006662 279 PSRAFDMAHCSRCL 292 (636)
Q Consensus 279 ~~~sFDlV~~s~~L 292 (636)
+ .||.|+++..+
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998765
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=78.73 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCC-CccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
...|||+|||+|.+..+|.+. +- .++..+|.++.++..+.++.- +.+.+ ...+.+++ ++||+|-+.+++....
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~--~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQ--GSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEE--eeccCCCCCCCEEEEEECChhhhCC
Confidence 567999999999999999875 32 357777888889999877521 12222 12233555 8999999999987653
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-.+..+|-||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=64.60 Aligned_cols=95 Identities=28% Similarity=0.408 Sum_probs=66.8
Q ss_pred EEEeCCCCcHHH--HHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CC---eEEEEecccc--CCCCC-CCeeEEEeccc
Q 006662 222 AIDTGCGVASWG--AYLMSRNILAVSFAPRDTHEAQVQFALERG--VP---ALIGVMASIR--LPYPS-RAFDMAHCSRC 291 (636)
Q Consensus 222 VLDIGCGtG~~a--~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~---~~~~~~d~~~--Lpf~~-~sFDlV~~s~~ 291 (636)
+||+|||+|... ..+...+..++++ |.+..++..+.... .. +.+...+... +++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGV---DLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEE---eCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999955 3333323345554 77777776654332 11 3566666555 77777 489999 6666
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..++.. ....+.++.++|+|+|.+++...
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 656554 78999999999999999999865
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.4e-05 Score=73.94 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=67.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh----hcc--cchhh-ccccccCCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
...+|||+|||+|.++..++.. +- -.|+.+|.++.++..+.+ .|+ +-+++ |.-+.+...+..+|.++.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3568999999999998887642 11 234555666567666554 244 12221 11111111222356655422
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGME 595 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~ 595 (636)
...++.++-++.|+|+|||++++... .+.+..+.+.++.+.
T Consensus 118 -------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 23578999999999999999999753 345555666665553
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.8e-05 Score=81.48 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=68.4
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-CCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~ 293 (636)
.+|||+|||+|.++..++.++..++++ |+++.+++.|+++ +. ++.+..+|..... ...+.||+|+..--.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~v---E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr- 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGI---EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR- 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC-
Confidence 489999999999999999887667677 8888888877644 33 5678877765432 122469999987643
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..-...++..+. .++|++.++++..
T Consensus 311 --~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 --RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 212245556664 4799999999954
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.3e-05 Score=81.38 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=67.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
++|||||||+|.++..-++.|. .+.++...++..-..+.++.++.. +.+..+.++++.+|....|+|++-+.-.-..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 4999999999999999998864 455664445555555556666654 4555555666555678899999854331111
Q ss_pred -cC-hHHHHHHHHhcccCCcEEEE
Q 006662 297 -QY-DGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 297 -~d-~~~~L~el~RvLKPGG~Lii 318 (636)
+. ...+|-.=.+.|+|||.++=
T Consensus 142 ~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HhhhhhhhhhhhhhccCCCceEcc
Confidence 11 15667777899999998754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.3e-05 Score=90.89 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=71.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC-CCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL-PYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L-pf~~~sFDlV~~s~ 290 (636)
++|||+|||+|.++..++..+. .++.+ |+++.+++.|+++ +. .+.+..+|..+. .-..++||+|++..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~v---D~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTV---DMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4899999999999999999865 46666 9999999888754 33 367777776432 11146899999853
Q ss_pred ccccc----------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPW----------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~----------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
-...- ..+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22110 11124678888999999999998754
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.5e-05 Score=81.41 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=67.4
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccCC--C--CCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRLP--Y--PSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~Lp--f--~~~sFDlV~ 287 (636)
.+|||+|||+|.++..++..+. .++.+ |+++.+++.|+++ +. .+.+..+|....- + ..++||+|+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~V---D~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSV---DTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4899999999999988766543 55566 8898988887644 43 3577777765431 1 246899999
Q ss_pred eccccccccc--------ChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQ--------YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~--------d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+..-...-.. +-..++....++|+|||.|++..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8743211110 11345556789999999999865
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00024 Score=86.24 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=68.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcC---------------------CCeEEEEeccccC
Q 006662 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---------------------VPALIGVMASIRL 276 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg---------------------~~~~~~~~d~~~L 276 (636)
.+|||+|||+|.++..++++. ..++.+ |+++.+++.|+++. ..+.+...|....
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~av---Dis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGL---DINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 489999999999999999863 455566 88999998885431 1356676675432
Q ss_pred CCCC--CCeeEEEecccccccc---------------------------------cCh----HHHHHHHHhcccCCcEEE
Q 006662 277 PYPS--RAFDMAHCSRCLIPWG---------------------------------QYD----GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 277 pf~~--~sFDlV~~s~~L~h~~---------------------------------~d~----~~~L~el~RvLKPGG~Li 317 (636)
+.+ ..||+|+++--.+.-. ++. ..++.+..++|+|||.++
T Consensus 197 -~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 -CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred -ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 222 3699999965432110 111 357778889999999999
Q ss_pred EEeC
Q 006662 318 LSGP 321 (636)
Q Consensus 318 is~p 321 (636)
+...
T Consensus 276 lEiG 279 (1082)
T PLN02672 276 FNMG 279 (1082)
T ss_pred EEEC
Confidence 8743
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.5e-05 Score=80.77 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhh--ccccccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQ--NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~--~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
.+...|||+|||.|.++..|.+.. .+++.+|.++..+..+.++ ++...++ ++.+.....+..||+|.+..+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 345679999999999999998875 3566677776777776665 3311111 222221123478999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|.... +...+|-++.|+|+|||.+++...
T Consensus 124 l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 LEHVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 76543 457899999999999999999853
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.6e-05 Score=75.35 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----h-cccchhhcccccc--CCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----R-GLIGTYQNWCEAM--STYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----R-gli~~~~~~ce~~--~~yp~t~Dl~H~~~~f 549 (636)
...|||+|||.|++..+|++.-= .-.|...|.++.++..+.+ + ++..+..|-.+.. ...+.+||+|=++
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--- 148 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD--- 148 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC---
Confidence 45899999999999999987510 0134555666566664433 2 2222222322211 1224668875331
Q ss_pred ccCCCCcCH---HHHHHHHhhcccCCcEEEEE
Q 006662 550 SLYKDRCEM---EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 550 s~~~~~c~~---~~~l~e~dRiLrPgG~~i~~ 578 (636)
-++. ..+|.|+-|+|||||.++|+
T Consensus 149 -----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 149 -----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1221 24577999999999999993
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=77.77 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=74.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc--cchhhccccccC--CCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQNWCEAMS--TYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~~~ce~~~--~yp-~t~Dl~H~~~ 547 (636)
-..|||+|||.|.|+.+|+.+.- -.||+.+|.+..++..+.+ .|+ +-+.+.=...+. .+| .++|.|+++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46899999999999999987521 1366777777677766654 344 122221011111 245 5899887642
Q ss_pred c---cc--cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006662 548 I---FS--LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDG 593 (636)
Q Consensus 548 ~---fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 593 (636)
- +. ..+.|...+.+|-++-|+|||||.+++. |..+....+.+.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 1 11 1224555688999999999999999985 666666666665544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00014 Score=75.16 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYP 279 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~ 279 (636)
..++.+.+.+...++. +|||||||+|.++..|+++...++.+ |+++.+++.++++. .++.+...|...++++
T Consensus 16 ~i~~~i~~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~~i---E~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGD--VVLEIGPGLGALTEPLLKRAKKVTAI---EIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCcEEEE---ECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 3455666666555544 99999999999999999987666666 88888888887552 4577888888887765
Q ss_pred CCCee---EEEecccc
Q 006662 280 SRAFD---MAHCSRCL 292 (636)
Q Consensus 280 ~~sFD---lV~~s~~L 292 (636)
+|| +|+++..+
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 466 77776543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=77.48 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=84.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEE-eccccCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGV-MASIRLPYP 279 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~-~d~~~Lpf~ 279 (636)
..+.++.....|. .|||-=||||.+.....-.|..+++. |++..|++-|+.+ ++ ...+.. .|+..+|++
T Consensus 187 R~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 187 RAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence 3445555556666 89999999999999998889988888 9999999988755 22 233334 499999999
Q ss_pred CCCeeEEEecccc-----cccc--cCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCL-----IPWG--QYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L-----~h~~--~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||.|.+-.-. ..-. ++. ..+|..+.++|++||++++..|
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999983211 0111 111 6789999999999999999987
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.8e-05 Score=71.82 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=88.7
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-----C
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----Y 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp-----f 278 (636)
..+.++..+.... +.-|||+|.|||-++..++++++.-.++...+.+.+......+....+.+..+|+..+. +
T Consensus 36 lA~~M~s~I~pes--glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPES--GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCccc--CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 4445555554333 34799999999999999999977655555568888988888888877778888876654 5
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.+..||.|+|.--+..++... -++++++...|++||.++--..
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 678899999976665555444 6789999999999999987643
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-05 Score=77.24 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=70.4
Q ss_pred CCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhhcc-cc--hhhccccccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYERGL-IG--TYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgl-i~--~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
.+..+|||+|||+|.++..|.+. .-...+|+.+|.++.++..+.++.- .+ ....=++.+..-+.+||+|-++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45678999999999998887642 1112478888998899999988732 11 111112344443589999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|....+. ++..+|-||-|++| |.+++.|
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 7654432 35679999999999 5666665
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=74.06 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhccCC-CCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEe--
Q 006662 201 ADAYIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG----VPALIGVM-- 271 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~-g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~-- 271 (636)
+++..+.+.+.+.... -....+||+|||+|.++..++.. ..+++.+ |.|++++..|.++. ..-.+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai---D~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI---DVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE---eccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 5666777776664322 12237999999999999999876 4555666 99999999887652 22122221
Q ss_pred --c---cccCCCCCCCeeEEEecccccccccChH-------------------------HHHHHHHhcccCCcEEEEEeC
Q 006662 272 --A---SIRLPYPSRAFDMAHCSRCLIPWGQYDG-------------------------LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 272 --d---~~~Lpf~~~sFDlV~~s~~L~h~~~d~~-------------------------~~L~el~RvLKPGG~Liis~p 321 (636)
. ....+...+.+|+++|+--.+.-.+.+. .++.-+.|.|+|||.+++..-
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 1223355789999999765422211110 345567899999999999853
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=70.88 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHH----HHcC----CCeEEEEecccc-C--C-CCCCCe
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA----LERG----VPALIGVMASIR-L--P-YPSRAF 283 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A----~erg----~~~~~~~~d~~~-L--p-f~~~sF 283 (636)
.+.+|||+|||+|..+..++.. ...++-. |.++ .++.. ..++ ..+.+...+-.. . . .....|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~T---D~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLT---DYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEE---E-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEe---ccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3459999999999988888887 3333333 3343 33332 2222 234444443211 1 1 234689
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|+++.++ +.....+.++.-+.++|+|+|.++++.+
T Consensus 121 D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 121 DVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999999999 4444558899999999999999777754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=76.33 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCc----HHHHHHhhcCC----EEEEcCcCCchHHHHHHHHH---------cCCC---------------
Q 006662 218 SIRTAIDTGCGVA----SWGAYLMSRNI----LAVSFAPRDTHEAQVQFALE---------RGVP--------------- 265 (636)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~~v----~vv~i~p~Dis~a~l~~A~e---------rg~~--------------- 265 (636)
..-+|.-.||++| +++..|.+... ..+.|.+.|++...++.|+. ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 55555555432 24566667999999988852 1111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 266 ----------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 266 ----------~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+.|...+...-++..+.||+|+|-++|+.+.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2333333333332456799999999998886444 789999999999999999974
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=84.04 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=79.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc---cchhhccccccCCCC-Cccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|.++..+++. +- .+|+.+|.+++++..+.++.- +.+.+.-.+.+ +++ .+||+|-+.+++..
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 568999999999988887653 21 356667777788888877632 12222111222 344 79999988777654
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------------HHHHHHHHHhcCCCceE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-----------------ILVKIKSITDGMEWEGR 599 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-----------------~~~~~~~~~~~~~W~~~ 599 (636)
.. +.+.+|-|+-|+|+|||.+++.+... ..+.+.++++...++..
T Consensus 191 ~~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 191 WP---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 44 44789999999999999998864321 13556667777777654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.1e-05 Score=82.28 Aligned_cols=120 Identities=15% Similarity=0.132 Sum_probs=76.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH----Hhhcc--cchhh-ccccccCCCC-Cccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI----YERGL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~eRgl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
....+||+|||.|.|..+|+...= -.|++.+|-+..++..+ .++|+ +-+++ |.-+-+..+| .++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln- 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH- 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-
Confidence 356899999999999999986520 12566666665554444 44565 22222 2212233455 899999874
Q ss_pred cccc-C-C---CCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC-CCce
Q 006662 548 IFSL-Y-K---DRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM-EWEG 598 (636)
Q Consensus 548 ~fs~-~-~---~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~-~W~~ 598 (636)
|.. | + .|=-.+.+|-|+-|+|+|||.+.| +|..++...+.+.+... +++.
T Consensus 200 -FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 -FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred -CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 432 1 1 122236899999999999999988 57777777666665444 4444
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.6e-05 Score=77.53 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H~~ 546 (636)
...+|||+|||+|.+++.|++. +- .-.|+.+|..+.++..+.++ |+ +-+. .+..+..++ ..||+|++.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~--~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVI--VGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE--ECCcccCCCcCCCcCEEEEC
Confidence 3679999999999999877653 00 01233344454666666554 33 1122 123344454 789999984
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+. .+.+.-++-+.|||||.+++-
T Consensus 153 ~~---------~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 153 AA---------GPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CC---------cccchHHHHHhhCCCcEEEEE
Confidence 43 344455677799999999985
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=75.33 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=70.5
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhhcccchhhcccccc------CCCC-Cccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM------STYP-RTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~------~~yp-~t~Dl~H 544 (636)
..+|||+|||.|++..++.++ .|+.. |.++ +. ...++--+..|..+.. ..+| .+||+|=
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~v-----Dis~-~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAV-----DLQP-MK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEE-----eccc-cc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 568999999999998877653 14443 3331 11 0012211112333211 1244 6799888
Q ss_pred eccccc------cC--CCCcCHHHHHHHHhhcccCCcEEEEEe-CH----HHHHHHHHHHhcCCCceEEe-ccCCCCCCc
Q 006662 545 ADSIFS------LY--KDRCEMEDVLLEMDRILRPEGSVIIRD-DV----DILVKIKSITDGMEWEGRIA-DHENGPRQR 610 (636)
Q Consensus 545 ~~~~fs------~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~----~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~ 610 (636)
+++... .. ...+.++.+|.++.|+|||||.+++.. .. +++..+++ .+ |.+.+. |.-....+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 754321 11 111234789999999999999999942 22 23333333 22 445433 322333357
Q ss_pred ceEEEEE
Q 006662 611 EKILFAN 617 (636)
Q Consensus 611 ~~~l~~~ 617 (636)
|+.+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8999885
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.1e-05 Score=75.69 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=74.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
...|||+|||.|.++..+++.+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+ ..||+|.++--|
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 46899999999999998887643 2556667666677655542 33 11221 3322 234 689999987433
Q ss_pred ccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCceEEe
Q 006662 550 SLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 550 s~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
.... ....++.++.++-|+|+|||.+++-. .......+.+.+++-.|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 2110 11225678889999999999999842 2223344555555556655543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.8e-05 Score=76.81 Aligned_cols=136 Identities=17% Similarity=0.304 Sum_probs=84.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh---cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++..- ...|+.+|.++..+..+.+. +. +-+++ |+ +...+ .+||+|-++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45799999999999999976520 13566667776777777664 22 22222 33 33344 78999987533
Q ss_pred cccC-------------CC-------C---cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCC
Q 006662 549 FSLY-------------KD-------R---CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHEN 605 (636)
Q Consensus 549 fs~~-------------~~-------~---c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 605 (636)
+... .. . -.+..++-++.++|+|||++++--....-..++++++...+...... .|
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC
Confidence 2210 00 0 01346888899999999999997544555667777776666522211 11
Q ss_pred CCCCcceEEEEEe
Q 006662 606 GPRQREKILFANK 618 (636)
Q Consensus 606 ~~~~~~~~l~~~K 618 (636)
-.+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 225678888765
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.9e-05 Score=89.12 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-----cchhhccccccCC-C-CCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMST-Y-PRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~~~ce~~~~-y-p~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++. + ..+|+.+|.+..++..+.++-- +-+++.=+..++. + |.+||+|.++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 468999999999998888753 2 2467778888888888876521 1111111122332 4 489999988665
Q ss_pred cccC-------C---CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLY-------K---DRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~-------~---~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+-.. . +.-++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4311 1 123567899999999999999999874
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9e-05 Score=75.79 Aligned_cols=118 Identities=18% Similarity=0.296 Sum_probs=75.8
Q ss_pred ccCCCCCcceEeeecccchhhhhhhcCCCeEE------EEecCCCCCccchHHHHhhcccchhh-----cc----ccccC
Q 006662 470 QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWV------MNTVPVEAKINTLGVIYERGLIGTYQ-----NW----CEAMS 534 (636)
Q Consensus 470 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~------mnv~~~~~~~~~l~~~~eRgli~~~~-----~~----ce~~~ 534 (636)
.|++ +..-++|||+||+|-.|..+.++ |-. -+|.-.|-+++||.+...|-.-+-|. -| .|.++
T Consensus 95 ~L~p-~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGP-GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCC-CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 4666 66799999999999888877654 111 33444455568998887776321111 13 25666
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhc
Q 006662 535 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDIL-VKIKSITDG 593 (636)
Q Consensus 535 ~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~ 593 (636)
|| .+||+.-.. |+.. +--+++..|-|+.|||+|||.|.+=+=.++- +.|+.+...
T Consensus 173 -Fdd~s~D~yTia--fGIR-N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 173 -FDDDSFDAYTIA--FGIR-NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred -CCCCcceeEEEe--ccee-cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 87 999985531 2211 1134689999999999999999886544333 344544443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00017 Score=71.85 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=71.4
Q ss_pred HHHHhhc--cCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcC---------------CC
Q 006662 207 DIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------------VP 265 (636)
Q Consensus 207 ~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg---------------~~ 265 (636)
.+.++|. +.+|. +.||+|.|+|.++..++.. +...++| +..++.++.+.++- ..
T Consensus 71 ~~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI---Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 71 TALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGI---EHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccch---hhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 3444444 45666 8999999999998888754 3322444 77888887776431 13
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+.++|....--+...||.||+.... ....+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 566777777666667889999996433 345577888899999998863
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0002 Score=67.12 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcH-HHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCC-CCCe
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVAS-WGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAF 283 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~-~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~-~~sF 283 (636)
+.|.+.++... ..++||||||+|. ++..|++.|..++.+ |+++..++.+++++. .+...|..+-++. -+.+
T Consensus 6 ~~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 6 EFIAENYEKGK--NKKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHhccccc--CCEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcC
Confidence 34555544333 3589999999995 999999999888888 999999999988875 4445555443322 3569
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
|+|++.+.- .+....+.++.+.+ |.-+++.
T Consensus 79 ~liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 79 KLIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred CEEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 999987633 23345566666554 4556665
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0003 Score=70.70 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhccCCC--CCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDG--SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g--~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf 278 (636)
...++.+.+....... ...++|||||=+......-... .++.+ |++. ..-.+.+.|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~I-----DLns----------~~~~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRI-----DLNS----------QHPGILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEe-----ecCC----------CCCCceeeccccCCC
Confidence 4455555555432211 2358999999865433222111 23333 5542 112355567777766
Q ss_pred C---CCCeeEEEecccccccccCh---HHHHHHHHhcccCCcE-----EEEEeCCCCccccccCCCCchhhhHHHHHHHH
Q 006662 279 P---SRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGY-----WILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (636)
Q Consensus 279 ~---~~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~-----Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie 347 (636)
| ++.||+|.++.+| .+.+++ ...++.+.+.|+|+|. |+++.|..- ..... ....+.+.
T Consensus 98 p~~~~e~FdvIs~SLVL-NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--v~NSR--------y~~~~~l~ 166 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVL-NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--VTNSR--------YMTEERLR 166 (219)
T ss_pred CCCcccceeEEEEEEEE-eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH--hhccc--------ccCHHHHH
Confidence 4 6799999999999 666677 6899999999999999 999987332 11110 11234577
Q ss_pred HHHHHhceEeecc
Q 006662 348 TIARSLCWKKLIQ 360 (636)
Q Consensus 348 ~la~~l~Wk~v~~ 360 (636)
++.+++||..+..
T Consensus 167 ~im~~LGf~~~~~ 179 (219)
T PF11968_consen 167 EIMESLGFTRVKY 179 (219)
T ss_pred HHHHhCCcEEEEE
Confidence 8899999987764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.3e-05 Score=77.09 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=74.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCC----CC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMST----YP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~----yp-~t~Dl~H~~~~fs 550 (636)
.-.|||+|||-|.++..|+..+ -+|..+|.++..++++..+.+.+-+. +|= .+.. -. .+||.|-|..|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHH
Confidence 4579999999999999999999 68999999999999998776643222 110 1111 11 5899888866666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+ -+.+.++.+..+.|||||.++++.-
T Consensus 136 Hv---~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HV---PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred cc---CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 44 4557899999999999999999853
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00074 Score=72.33 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccC------CCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc-----CCC--
Q 006662 201 ADAYIDDIGKLINLK------DGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVP-- 265 (636)
Q Consensus 201 ~~~~id~L~~lL~l~------~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er-----g~~-- 265 (636)
.-.|+..+.+++... .+...++||||||+|.+...|+.+ +..++++ |+++.+++.|+++ +..
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~at---DId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGS---DIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEE---eCCHHHHHHHHHHHHhccCCcCc
Confidence 455777787776421 234568999999999888888765 4555555 8888888887643 222
Q ss_pred eEEEE-eccccCC----CCCCCeeEEEecccccc
Q 006662 266 ALIGV-MASIRLP----YPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 266 ~~~~~-~d~~~Lp----f~~~sFDlV~~s~~L~h 294 (636)
+.+.. .+...+. .+.+.||+|+|+--++.
T Consensus 168 I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 168 IRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 33322 1222211 24568999999986633
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.2e-05 Score=70.84 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=63.5
Q ss_pred EeeecccchhhhhhhcCCC--eEEEEecCCCCCccchHHHHhhccc-c-hhhccccccCCCC---CccceeeeccccccC
Q 006662 480 LLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYERGLI-G-TYQNWCEAMSTYP---RTYDLIHADSIFSLY 552 (636)
Q Consensus 480 vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eRgli-~-~~~~~ce~~~~yp---~t~Dl~H~~~~fs~~ 552 (636)
|||+|||.|....++.+.- ---..+..+|.++.+|..+.++.-- + -.+--+..+...| .+||+|=+.+.+-.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999987651 0125777888888999999988831 1 1111123333333 799999997663333
Q ss_pred CCCcCHHHHHHHHhhcccCCc
Q 006662 553 KDRCEMEDVLLEMDRILRPEG 573 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG 573 (636)
-..-.++.+|-++-++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 555678899999999999998
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.7e-05 Score=62.87 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=63.0
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH---hhcc---cchhh-ccccccCC-CCCccceeeeccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY---ERGL---IGTYQ-NWCEAMST-YPRTYDLIHADSIFS 550 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---eRgl---i~~~~-~~ce~~~~-yp~t~Dl~H~~~~fs 550 (636)
+|+|+|||.|++...+.+.+. ..+...|.+++.+..+. +.+. +-.++ |+. .+.. -+..||++.+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAE-ELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChh-hhccccCCceEEEEEcccee
Confidence 489999999999999987432 34455555544555444 1111 22232 222 2222 347899999988877
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.. .-....++-.+.++|||||++++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 235578999999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=74.20 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=79.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccc-cccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~~~yp-~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++.++++. +- .+++.+|.++.++..+.++ |+- .++-.+ ..+..++ ..||+|-++--|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCC
Confidence 357999999999999999875 22 2566667666677666543 441 122122 2334454 789999886554
Q ss_pred ccCC------CCc-----------------CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 550 SLYK------DRC-----------------EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 550 s~~~------~~c-----------------~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
.... ... ....++-++-|+|+|||.+++.........+++++++..++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 4211 000 0236788999999999999998766666778888887777644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=75.72 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=87.0
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchh-hccccccCCCC-Cccceeeecc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTY-QNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~-~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
.+|||+|||.|.++.+|++. +- .+|+.+|.+...+.++.+. |+ +-.+ .||.+. .+ ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 57999999999999999864 21 2566677776778777664 33 2233 255543 34 3799887641
Q ss_pred -------------ccccCCCC---------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh-cCCCceEEeccC
Q 006662 548 -------------IFSLYKDR---------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITD-GMEWEGRIADHE 604 (636)
Q Consensus 548 -------------~fs~~~~~---------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~e 604 (636)
++...... -.+..++-+.-++|+|||++++--..+.-..+.++.. ...|..... ..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~ 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GR 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ec
Confidence 11100000 0245789999999999999999766666677788766 466743221 22
Q ss_pred CCCCCcceEEEEEec
Q 006662 605 NGPRQREKILFANKK 619 (636)
Q Consensus 605 ~~~~~~~~~l~~~K~ 619 (636)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2357888888653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=65.62 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=60.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh----hcccc--hhh-ccccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIG--TYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgli~--~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.++++. +- .+|+.+|.++.++..+.+ .|+-. +.. |.-+.....+.+||.|=+.+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 459999999999999999875 21 356666766666666532 23311 111 100111122468998766332
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+ ..++.++-++-|+|+|||++++.
T Consensus 98 ~------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 G------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred c------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 2 23468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=74.87 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=84.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhh-ccccccCC-CCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-NWCEAMST-YPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~-~~ce~~~~-yp~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ .+++ |+.+.+.. ....||+|=+|==+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 357999999999999888653 21 2455667766777766543 32 2222 44332221 23579998776433
Q ss_pred cc-------------CCCCcC----------HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCC
Q 006662 550 SL-------------YKDRCE----------MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 606 (636)
Q Consensus 550 s~-------------~~~~c~----------~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 606 (636)
.. +..+.. +..++..+.++|+|||.+++--..+....+..++++..|+..+..|++.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 21 111111 3478888899999999999976666778899999999999999888764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.7e-05 Score=74.26 Aligned_cols=102 Identities=10% Similarity=0.088 Sum_probs=72.1
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccch----hhccccccCCCCCccceeeeccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGT----YQNWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~----~~~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+..+|||+|||.|.++.+|++.+. .|+.+|.++.++..+.++.-... ..-.+..+...|.+||+|=+..++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 3467999999999999999988754 56777888789988887642111 1111233333458899987766654
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+. ..++..++.++.|+++|++++.+...
T Consensus 131 ~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 131 HYP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hCC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 432 34567899999999999888887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=72.88 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=65.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----c---cchhh-ccccccCCC-CCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTY-PRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l---i~~~~-~~ce~~~~y-p~t~Dl~H~~~ 547 (636)
...|||+|||.|.++..+.+..--.-.++.+|.+++.+..+.++- + +-+++ |.. .+. + +.+||+|.+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCC-CCCCCccEEEEec
Confidence 468999999999998888664200124555666656777666652 2 22222 211 111 3 37899998865
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++. +..+.+.+|-++.++|+|||.+++.+
T Consensus 130 ~l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 543 34567899999999999999999864
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=8e-05 Score=74.92 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=69.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccc------cCCC-CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA------MSTY-PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~------~~~y-p~t~Dl~H~~~~f 549 (636)
..+|||+|||+|+|...+++..--.-.|+.+|..+ +.++ .|+.-+..|..+. ...+ +.+||+|-++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 45899999999999888866410001223333331 1110 1221111122211 0123 3789999886532
Q ss_pred ccCCCC--------cCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEE
Q 006662 550 SLYKDR--------CEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPRQREKILFA 616 (636)
Q Consensus 550 s~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 616 (636)
...... ...+.+|-|+-|+|+|||.+++..- .+.+..+++....... ..+...-.-..|..+||
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIVA 204 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEEe
Confidence 221111 1135789999999999999999532 2333333333333222 22323333357888888
Q ss_pred E
Q 006662 617 N 617 (636)
Q Consensus 617 ~ 617 (636)
.
T Consensus 205 ~ 205 (209)
T PRK11188 205 T 205 (209)
T ss_pred e
Confidence 5
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=76.30 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=78.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~ 546 (636)
..+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ +-.++ |+ +...| ..||+|-++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEEC
Confidence 457999999999999999865 21 2566677776787777654 54 22232 33 33445 589998875
Q ss_pred ccccc------------CC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEecc
Q 006662 547 SIFSL------------YK---------DRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADH 603 (636)
Q Consensus 547 ~~fs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 603 (636)
-=+.. +. +.. ....++-++-++|+|||++++--..+. .++++++....|....+++
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 21110 00 011 125788999999999999998654433 6888887766555444443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.9e-05 Score=79.57 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=71.7
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh-
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD- 299 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~- 299 (636)
.+||+|||.|-.+..- -....++. |++...+.-+++.+.. .....|+..+|+.+.+||.+++..+++|+....
T Consensus 48 v~~d~gCGngky~~~~--p~~~~ig~---D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVN--PLCLIIGC---DLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred eeeecccCCcccCcCC--Ccceeeec---chhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 8999999999644211 11223333 8887777777655542 566678999999999999999999998887554
Q ss_pred -HHHHHHHHhcccCCcEEEEEe
Q 006662 300 -GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 300 -~~~L~el~RvLKPGG~Liis~ 320 (636)
..+++++.|+|||||...+..
T Consensus 122 R~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEEE
Confidence 689999999999999877764
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0018 Score=65.66 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=67.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEE-ecccc-CC-CCCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVP--ALIGV-MASIR-LP-YPSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~-~d~~~-Lp-f~~~sFDlV~ 287 (636)
++|||||.+.|.-+.+|+.. ..+.+.+ |.+++..+.|+++ |.. +.... +|..+ +. ...++||+|+
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~ti---E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTI---ERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEE---eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 48999999999999999875 3345566 8888888888754 332 33443 24322 11 3468999998
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.- +...+-..++..+.++|||||.+++..
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 63 333333789999999999999999974
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=77.03 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=72.1
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++..+..+.+. |+ +-+++ |+. ...| .+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~---~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF---AALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh---hhCCCCCccEEEECC
Confidence 57999999999999999764 32 4566778777788777654 44 33333 332 3334 6899998862
Q ss_pred cccc------------CCC---------Cc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcC
Q 006662 548 IFSL------------YKD---------RC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGM 594 (636)
Q Consensus 548 ~fs~------------~~~---------~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~ 594 (636)
=+.. +.. .. ....++-++-++|+|||.+++--..+ ...+.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1110 000 01 13478999999999999999954333 33577776654
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=75.46 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRL 276 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~L 276 (636)
..++.+.+.+...++. +|||||||+|.++..+++.+..++.+ |+++.+++.++++ + .++.+...|....
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~av---EiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAI---EIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEE---ECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 3556677766655555 89999999999999999987666666 8888888887654 1 3577888887766
Q ss_pred CCCCCCeeEEEecccc
Q 006662 277 PYPSRAFDMAHCSRCL 292 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L 292 (636)
+++ .||+|+++.-.
T Consensus 98 ~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 98 EFP--YFDVCVANVPY 111 (294)
T ss_pred ccc--ccCEEEecCCc
Confidence 553 68999987644
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.58 E-value=8e-05 Score=74.04 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=65.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCcc----chHHHHhhcccchhhccccccCC--CCCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMST--YPRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~----~l~~~~eRgli~~~~~~ce~~~~--yp~t~Dl~H~~~~fs 550 (636)
.-.|||+|||-|--|.+|++++.=| ...|.+.. ...++-+++|- ++-++..+.. +|..||+|.+..+|-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~V---tAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDV---TAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EE---EEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeE---EEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec
Confidence 4589999999999999999998733 33344432 33444556773 3333333433 468999999877776
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
..+ +-.++.++-.|-.-|+|||+++|
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 554 55789999999999999999988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0002 Score=81.39 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHH----HHcCC-CeEEEEeccccC--CCCCCCeeEEEec
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFA----LERGV-PALIGVMASIRL--PYPSRAFDMAHCS 289 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A----~erg~-~~~~~~~d~~~L--pf~~~sFDlV~~s 289 (636)
...+||||||.|.++..+|... ...+++ +++...+..+ .+.+. ++.+...+...+ -++++++|.|+.+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGi---E~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGV---EVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEE---EeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4589999999999999999873 334444 5555544433 23343 455555554322 2778999999997
Q ss_pred ccccccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 290 RCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 290 ~~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
+.= +|+... ..++..+.++|||||.+.+.+
T Consensus 425 FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 FPD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 755 775432 479999999999999999984
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0006 Score=71.57 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=66.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CC-C----CCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LP-Y----PSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lp-f----~~~sFD 284 (636)
++|||||+|+|..+.+++.. +..++.+ |.++...+.|++. |. .+.+..+++.+ |+ + ..++||
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~Ti---E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVAC---ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 48999999999999999874 3345556 6677777777533 44 36666666533 22 1 136899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-. ...+-..++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 998633 22233688999999999999999873
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=64.23 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
+...+.+...+. ...+ .+|||++||+|.++.+++.++. .++.+ |.++.+++.++++ +. .+.+...|.
T Consensus 34 ~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~~v~~v---E~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 34 RVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAKVAFLE---EDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 333344555443 1233 3899999999999999999975 45555 7787777766543 32 356677776
Q ss_pred cc-CC-C-CC-CCeeEEEecccccccccChHHHHHHHH--hcccCCcEEEEEeC
Q 006662 274 IR-LP-Y-PS-RAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~-Lp-f-~~-~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~Liis~p 321 (636)
.+ +. + .. ..||+|+.---+.. .....++..+. .+|+++|.+++..+
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 33 22 1 12 24788887553311 12244455443 47899998888754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00026 Score=71.14 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhhccccccCCCCCccceeeecccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
...+|||+|||.|.++.+|++... .|..+|.+++++..+.++- +-..++-....+...+.+||+|.+.++|..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 357999999999999999988754 3677787778888887752 211111111223333588999999877754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+. .-.+..++-++-|++++++.+.+..
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 33 2356788899999887666555443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=7.4e-05 Score=75.17 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=56.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccc-cCCCC--Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEA-MSTYP--RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~-~~~yp--~t~Dl~H~~~~ 548 (636)
....|||+|||+|.+++.|++..=-.-.|+.+|..+..+..+.++ |+ .-++-.+.. ...++ ..||+|++++.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 356899999999999999876510001234445555666665443 44 212212221 12222 68999998432
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.+.+.-++-+.|+|||.+|+-
T Consensus 156 ---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 ---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------cccccHHHHHhcCcCcEEEEE
Confidence 244556678899999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=73.05 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=61.2
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhh-cccchhhccccccCCC---CCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTY---PRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eR-gli~~~~~~ce~~~~y---p~t~Dl~H~~~ 547 (636)
-.+|||+|||.|+|..+|++. .|+.+-+.|.-.. +++.++.+| +++.+..|-+... .| +.++|+|-++-
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeC
Confidence 468999999999999999875 2565544432221 466666665 5555555544321 12 25789876543
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. + .=....+++|+.|+|||||+|+|.
T Consensus 211 a----~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 A----Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C----C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 1 112235677999999999999994
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00031 Score=77.37 Aligned_cols=138 Identities=10% Similarity=0.141 Sum_probs=88.8
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeeeccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++.+++.+.+. |+ +.+++ ||.+...+-...||+|-++-=+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 37999999999999888753 32 3566777777888877664 32 22333 44432111124799988854321
Q ss_pred cC---------------------CCCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCCCC
Q 006662 551 LY---------------------KDRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 608 (636)
Q Consensus 551 ~~---------------------~~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 608 (636)
.. .+.- .+..++-+.-+.|+|||++++--..+....+++++++..|.....-.+ -.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l~ 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--LA 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--CC
Confidence 00 0010 123677788899999999999766677788999988888865422111 22
Q ss_pred CcceEEEEEec
Q 006662 609 QREKILFANKK 619 (636)
Q Consensus 609 ~~~~~l~~~K~ 619 (636)
+.++++++++.
T Consensus 409 G~dR~v~~~~~ 419 (423)
T PRK14966 409 GLDRVTLGKYM 419 (423)
T ss_pred CCcEEEEEEEh
Confidence 57889988753
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.3e-05 Score=73.52 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=72.8
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-Cccceeee
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~ 545 (636)
..-+.+ ..+|||+|||-|.+-++|.+ ++|-+ ..++.....+....+||+-=+-+|.=+.+..|| .+||.+=.
T Consensus 8 ~~~I~p---gsrVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 8 AEWIEP---GSRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHcCC---CCEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 333555 58999999999999999987 56633 444555567899999999644448889999998 99998765
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+...... -..+.+|.||-|| |...|++
T Consensus 82 sqtLQ~~---~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 82 SQTLQAV---RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HhHHHhH---hHHHHHHHHHHHh---cCeEEEE
Confidence 3333322 2346899999666 6688887
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00016 Score=74.51 Aligned_cols=92 Identities=23% Similarity=0.418 Sum_probs=72.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccc-hhhccccccCCCCCccceeeeccccccCCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIG-TYQNWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~-~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
+..++||+|||-|+.-+.|+.. .-+|..++.+..|.....+||+-= ...+|-+. +..||+|-|-.|. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 6788999999999999999663 234566677778999999999921 22245532 4679999996666 7
Q ss_pred CcCHH-HHHHHHhhcccCCcEEEEE
Q 006662 555 RCEME-DVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 555 ~c~~~-~~l~e~dRiLrPgG~~i~~ 578 (636)
||+-+ .+|-+|-+-|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 89987 7888999999999999996
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00044 Score=69.54 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=67.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CC-----CCCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LP-----YPSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lp-----f~~~sFD 284 (636)
++|||||+++|.-+.+|++. +..++.+ |.++...+.|++. +. .+.+..++... ++ .+.+.||
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~ti---E~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTI---EIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEE---ESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEe---cCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 48999999999999999975 4566666 6777777777532 33 46777776543 12 1246899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-. ...+-..++..+.++|+|||.+++..
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 998743 22333678899999999999999984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=78.55 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=58.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcC------CEEEEcCcCCchHHHHHHH----HHcC--CCeEEEEeccccCCCCCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRN------ILAVSFAPRDTHEAQVQFA----LERG--VPALIGVMASIRLPYPSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~------v~vv~i~p~Dis~a~l~~A----~erg--~~~~~~~~d~~~Lpf~~~sFDlV~ 287 (636)
..|||||||+|-+....++.+ +.+..+ +-++.+.... .+++ ..+.+...+...+..+. .+|+|+
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAV---Ekn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIV 263 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAV---EKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIV 263 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEE---ESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEE---cCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEE
Confidence 489999999998876665542 444455 4443333222 3333 35888989988887664 899999
Q ss_pred ecccccccccCh--HHHHHHHHhcccCCcEEE
Q 006662 288 CSRCLIPWGQYD--GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 288 ~s~~L~h~~~d~--~~~L~el~RvLKPGG~Li 317 (636)
+-..- .+..+. ...|....|.|||||.++
T Consensus 264 SElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 84322 233222 567889999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.9e-05 Score=72.93 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=61.1
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCCc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRC 556 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c 556 (636)
.+|||+|||.|.+..+|.+..- .++..+|.++.++..+.++|+--...|..+.+..++ ++||+|-++++|....
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 4799999999999999975421 134555666678888888876222223333344465 8999999988876443
Q ss_pred CHHHHHHHHhhcccC
Q 006662 557 EMEDVLLEMDRILRP 571 (636)
Q Consensus 557 ~~~~~l~e~dRiLrP 571 (636)
+...+|.||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 457888888777654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.6e-05 Score=75.40 Aligned_cols=115 Identities=22% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC--------CCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--------TYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~--------~yp~t~Dl~H~~ 546 (636)
...|.++|+|||.| +|+..+.-- --+|+.+|.++.||+++.+. -.-+||.=-.+++ -=+.+-|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhh
Confidence 34669999999999 777665542 36788899998999966544 4345543333333 236899986541
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEE-E---EeCHHHHHHHHHHHhcCCCc
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVI-I---RDDVDILVKIKSITDGMEWE 597 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i-~---~d~~~~~~~~~~~~~~~~W~ 597 (636)
-- -|=|+++..+-++-|||||.|-+| + +|+.-...++..+..+++|+
T Consensus 108 qa----~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QA----VHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hh----HHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 00 123889999999999999988222 1 44444555666666666664
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=72.83 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccch
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGT 525 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~ 525 (636)
...||..+...+. .. +..... +|||||||+|--|.+|+...- ..+|+.+|-++.-+.++.+ .|+.-+
T Consensus 92 Pr~dTe~Lve~~l---~~---~~~~~~--~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAAL---AL---LLQLDK--RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHH---Hh---hhhcCC--cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 3567888877765 11 122122 999999999999999987622 1577888887766766533 354221
Q ss_pred hhccccccCCCCCccceeeecc----------------------ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH
Q 006662 526 YQNWCEAMSTYPRTYDLIHADS----------------------IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI 583 (636)
Q Consensus 526 ~~~~ce~~~~yp~t~Dl~H~~~----------------------~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~ 583 (636)
+.--+.-|+..+..||+|-+|= +|+.....--+..++-+..++|+|||++++.-..+.
T Consensus 163 ~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 163 LVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred EEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 1111134555555788765421 222110111234789999999999999999988777
Q ss_pred HHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 584 LVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 584 ~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
...|+++.....+ ...+.....-.+.+.+.++++
T Consensus 243 ~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 243 GEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 8899999888886 332222333335667766654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0002 Score=75.88 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=63.7
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHH----hhcccchhhccccccC--CCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMS--TYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgli~~~~~~ce~~~--~yp~t~Dl~H~~~ 547 (636)
...+.|||+|||.|.++.++.++ |- .+++..|.+ .++..+. +.|+-.-++-.+..|. .+|. +|++-..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEh
Confidence 45789999999999999988765 32 133333443 5665543 3465332222233332 3554 79866555
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
++-.+.. -....+|-++-|.|||||.++|-|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4433322 1335799999999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0018 Score=67.80 Aligned_cols=141 Identities=23% Similarity=0.284 Sum_probs=91.2
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHH----HHcCCC--eEEEEeccccCC-CC--CCCeeE
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFA----LERGVP--ALIGVMASIRLP-YP--SRAFDM 285 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A----~erg~~--~~~~~~d~~~Lp-f~--~~sFDl 285 (636)
.+..-+||||.||.|......+.... ...++.-.|.++..++.. +++|.. +.|...|+.... +. .-..++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35566999999999988777766521 122444456676666544 466654 378877754421 11 345799
Q ss_pred EEecccccccccCh--HHHHHHHHhcccCCcEEEEEeCCCCc---------cccc--cCCCCchhhhHHHHHHHHHHHHH
Q 006662 286 AHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNW---------ESHW--KGWNRTTEDLKSEQNGIETIARS 352 (636)
Q Consensus 286 V~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w---------~~~~--~~W~~t~e~l~~~~~~ie~la~~ 352 (636)
++.+..++-+.++. ...+.-+.+.|.|||+++.++-|.+- ..|. .+|--- ...+.++.++++.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEA 288 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHH
Confidence 99998886666544 56789999999999999999743221 1111 123211 1235668888888
Q ss_pred hceEeecc
Q 006662 353 LCWKKLIQ 360 (636)
Q Consensus 353 l~Wk~v~~ 360 (636)
.+++++.+
T Consensus 289 aGF~K~~q 296 (311)
T PF12147_consen 289 AGFEKIDQ 296 (311)
T ss_pred cCCchhhh
Confidence 88887664
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=65.74 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC---Cccceeeeccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP---RTYDLIHADSIFS 550 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp---~t~Dl~H~~~~fs 550 (636)
...-.|=|||||-|-.|+++.+. .|.-.-+++.... ++. |.. ..-| .+.|++-+ .
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-----------Vta-----cdi-a~vPL~~~svDv~Vf----c 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-----------VTA-----CDI-ANVPLEDESVDVAVF----C 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-----------EEE-----S-T-TS-S--TT-EEEEEE----E
T ss_pred CCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-----------EEE-----ecC-ccCcCCCCceeEEEE----E
Confidence 34568999999999999887643 5666666665332 111 211 2233 78887543 2
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEecC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKY 620 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~~ 620 (636)
+.-=.-+..+.+.|..|||||||.++|.+-.. .++...+.++++..+....|..+ +--.++..+|.-
T Consensus 130 LSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~f~F~K~~ 199 (219)
T PF05148_consen 130 LSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVLFEFKKIR 199 (219)
T ss_dssp S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEEEEEEE-S
T ss_pred hhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEEEEEEEcC
Confidence 22223467899999999999999999986443 33455566888888888766553 345666777765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00033 Score=76.13 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=74.4
Q ss_pred EEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
.++|+|||.|....+++... ....++ +.++.++..+.+. ++ ...+...+....|++++.||.+.+..+..
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl---~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGL---DNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCC---CcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 79999999999999988763 334444 6666655544322 11 23446678888999999999999999996
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|. ++...++.|++|+++|||+++...
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeHH
Confidence 65 488999999999999999999873
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00065 Score=72.61 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg-~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
....+|+|.|.|+.+..+... .+.++.+ ....+-.++... ..+....+|...- .|. -|+|++-++++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~inf-----dlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINF-----DLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeec-----CHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccC
Confidence 458999999999999999886 3455544 333333333322 3445554554333 443 3699999999999
Q ss_pred ccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.++. ..+|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9666 8999999999999999999865
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00023 Score=71.20 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=56.1
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHh----hccc---chhh-ccccccCCCCCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYE----RGLI---GTYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----Rgli---~~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
...|||+|||+|.+++.|.+. +- .|+.+|..++++..+.+ .|+- -+++ |..+.+. -..+||.|.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~ 148 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIV 148 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEE
Confidence 568999999999999887643 11 24444555556555443 3442 2222 2222221 1268999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.+ +.+.-|+-|+|+|||.+++-.
T Consensus 149 ~~~~---------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAA---------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCc---------chhhHHHHHhcCcCcEEEEEE
Confidence 6543 233357889999999999853
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00031 Score=70.35 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H~~ 546 (636)
....+|||+|||+|.+++.|.+..- .|..+|..++.+..+.++ |+ +-+.+ ...+..+| ..||+|.++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEc
Confidence 3467899999999999987766521 345556555666666554 44 22222 12234444 689999885
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..+ +.+.-++-+.|+|||.+++.
T Consensus 152 ~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 152 AAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 432 34455677899999999985
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0015 Score=64.42 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
+++|+|+|||||.++...+-.|. .++.+ |+.+.+++.++++ +..+.+...|..+.. ..||.++.+--+-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~v---diD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAV---DIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEE---ecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 44899999999999888887763 44455 6677777777654 336888888876654 5688999877553
Q ss_pred ccccCh-HHHHHHHHhc
Q 006662 294 PWGQYD-GLYLIEVDRV 309 (636)
Q Consensus 294 h~~~d~-~~~L~el~Rv 309 (636)
-+.... ..++....++
T Consensus 120 ~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 120 SQRRHADRPFLLKALEI 136 (198)
T ss_pred cccccCCHHHHHHHHHh
Confidence 332222 3444444444
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00044 Score=69.31 Aligned_cols=147 Identities=15% Similarity=0.258 Sum_probs=109.4
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-----cchhhccccccCCCCCc
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMSTYPRT 539 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~~~ce~~~~yp~t 539 (636)
.++..+.. .+.++|.|+|||.|.--+.|+.+ |. --+..+|.+..||..+.+|.. .|..++||-. +.
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~ 92 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QP 92 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cc
Confidence 34444555 77999999999999998888887 33 346788999999999999987 5778888832 56
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHH--HHHHHHHHHhcCCCceEEeccC--CCCC-----
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVD--ILVKIKSITDGMEWEGRIADHE--NGPR----- 608 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~--~~~~~~~~~~~~~W~~~~~~~e--~~~~----- 608 (636)
.|+|-++-+|.-..+. ..+|-.+=--|+|||.+-+. |+.+ ...-|.+.++..-|...+-+.- -.+.
T Consensus 93 ~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 93 TDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred cchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 8999999999877666 66777777789999999887 4333 6678889999889987754311 0110
Q ss_pred -------CcceEEEEEecCCCC
Q 006662 609 -------QREKILFANKKYWTA 623 (636)
Q Consensus 609 -------~~~~~l~~~K~~w~~ 623 (636)
...+|=||.+.|-..
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHHhCcccceeeeeeeecccc
Confidence 136777888877665
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=70.24 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
.+++||.||+|.|..+.++++.. +. .+...|++++.++.|++.. ..+.+...|... +....++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 35689999999999999988852 21 2222377888888887542 345666666543 23345789999
Q ss_pred EecccccccccC------hHHHHH-HHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQY------DGLYLI-EVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d------~~~~L~-el~RvLKPGG~Liis~ 320 (636)
++-. ..++... ...+++ .+.+.|+|||.+++..
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9742 2222111 146777 8999999999998763
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.013 Score=61.97 Aligned_cols=128 Identities=17% Similarity=0.245 Sum_probs=76.8
Q ss_pred eEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHH----hhcccc--hhhccccccCCCCCccceeeecccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIY----ERGLIG--TYQNWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~----eRgli~--~~~~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
+|||+|||+|-.|+.|++.. . ..+.-+|.+..-++.+. +-++-+ +++ ..-++.-...||+|-+|==|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~--~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~--s~~~~~v~~kfd~IisNPPfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ--AKLTLVDVNARAVESARKNLAANGVENTEVWA--SNLYEPVEGKFDLIISNPPFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC--CeEEEEecCHHHHHHHHHhHHHcCCCccEEEE--ecccccccccccEEEeCCCccC
Confidence 99999999999999998763 2 12222333312222221 122322 232 1334444469999887776664
Q ss_pred CCCCc--CHHHHHHHHhhcccCCcEEEEEeC--HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 552 YKDRC--EMEDVLLEMDRILRPEGSVIIRDD--VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 552 ~~~~c--~~~~~l~e~dRiLrPgG~~i~~d~--~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.+.-- -.+.++.+.-+-|++||-++|=-+ ..+-.+|+++.. ++...... ++-+|+=++|
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k 299 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKK 299 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEec
Confidence 43221 123789999999999999888543 346667777666 44443322 3566776666
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=64.44 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=69.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCE---------EEEcCcCCchHHHHHHHHHc----CC--Ce
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NIL---------AVSFAPRDTHEAQVQFALER----GV--PA 266 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~---------vv~i~p~Dis~a~l~~A~er----g~--~~ 266 (636)
....+..+....++. .+||--||+|.+..+.+.. ++. .++. |+++.+++.|+++ +. .+
T Consensus 16 lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~---Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGS---DIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEE---ESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEec---CCCHHHHHHHHHHHHhcccCCce
Confidence 333455555555555 8999999999999776654 333 3344 8888888877654 33 36
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHhcccCCcEEEEE
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~Liis 319 (636)
.+.+.|...+++.++++|+|+++.-+-.-.... ..+++++.++|++...+++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 788889999998888999999976431111111 35788999999994444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=63.85 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=57.3
Q ss_pred HHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcCCCeEEEEecc------c
Q 006662 205 IDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMAS------I 274 (636)
Q Consensus 205 id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~------~ 274 (636)
+..+.+..+ ..++...+|||+||++|.|+..+++++ ..+++++.....+ ...+....+|. .
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~---------~~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP---------LQNVSFIQGDITNPENIK 79 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TTEEBTTGGGEEEEHSH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc---------ccceeeeecccchhhHHH
Confidence 344555555 444455799999999999999999986 4555553322210 01122222221 1
Q ss_pred cCC--C--CCCCeeEEEecccccccccC----h-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLP--Y--PSRAFDMAHCSRCLIPWGQY----D-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lp--f--~~~sFDlV~~s~~L~h~~~d----~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
.+. + ..+.||+|+|-.+. ....+ . ...+.-+...|+|||.+++-..
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 1 12689999985532 11111 1 1344455678999999998764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00032 Score=68.06 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=69.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCC-Cccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|-.+.+|+++.-- ..|.-+|.++..+..+.+ .++-.+.-.++..+...+ ..||+|=++-=|..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567999999999999999875210 124555666566666644 233111112334444454 99999888655433
Q ss_pred CCC--CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHh
Q 006662 552 YKD--RCEMEDVLLEMDRILRPEGSVII--RDDVDILVKIKSITD 592 (636)
Q Consensus 552 ~~~--~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~ 592 (636)
... ...+..++.+.-++|+|||.+++ +.....-..++++..
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 221 12357899999999999998854 434434444555554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=68.43 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=78.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc---cc-hhhccccccCCCC--Cccceeeecccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYP--RTYDLIHADSIF 549 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---i~-~~~~~ce~~~~yp--~t~Dl~H~~~~f 549 (636)
+.++|||+|||.|-+|-|.++.+. --|+.+|.-+-.++++.|--. +. +.+.=+-..+..| +.||+|-||=|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 389999999999999988888765 345666766667777776332 11 1111111123344 58999887211
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEEeccC
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
++ -+..+.=++-|.|||||++|++--. +..+.|.+.+.+-.|++.-+...
T Consensus 239 ----A~-vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 ----AE-VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ----HH-HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 00 1124555778999999999999633 35677888887778877655444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0019 Score=66.58 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=83.6
Q ss_pred CcceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhhcc--------cchhh-ccccccCCCC-Ccccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYERGL--------IGTYQ-NWCEAMSTYP-RTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eRgl--------i~~~~-~~ce~~~~yp-~t~Dl~ 543 (636)
....|||+|||.|..+-.|+++ + + -++.++-.+.....+ .|.+ |-++| |.-+-....+ .+||+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A-~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMA-QRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHH-HHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 3889999999999998888877 3 2 223333332233222 2222 34444 2111112223 469998
Q ss_pred eeccccc---------------cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 544 HADSIFS---------------LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 544 H~~~~fs---------------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
=|+==|= .++..|++++++-=.-++|+|||++.+=-+.+.+..|.+++++++|..+
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 8754432 3456688999999999999999999999999999999999999999987
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=68.44 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=80.2
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh-cccc------hhh-ccccccCCCCCccceeee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER-GLIG------TYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR-gli~------~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
...++|||+|||.|.++.+|.+. |- +.|.-+|..+..+.++.+. ++.+ +.+ |.-+-+...|.+||+|=+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999988654 32 3444455555688887765 2221 111 211223345678999977
Q ss_pred ccccccC-C-CCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 546 DSIFSLY-K-DRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 546 ~~~fs~~-~-~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
+ .|... . .......++.++-++|+|||.+++- .+......++.+.+.+.-.+.+...+. ....|+++.|
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 5 34321 1 1122368999999999999999983 222222223333333332333333221 1347888876
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00063 Score=72.06 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=72.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCC-Cccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|-.|-+-++.+- -.|+.+|..+..+..+.+ -|+-.-+. . ......+ ..||+|-||=+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v-~~~~~~~~~~~dlvvANI~~~- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-V-SLSEDLVEGKFDLVVANILAD- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-E-SCTSCTCCS-EEEEEEES-HH-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-E-EEecccccccCCEEEECCCHH-
Confidence 46999999999977655444432 223444544444444443 34322111 1 1122334 8899988832222
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
-+..++-++.+.|+|||++|++-- .+....|.+.++. .|++.....+ +.-..|+++|+
T Consensus 237 -----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 -----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp -----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred -----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 123566678999999999999842 2345666676666 7776544433 34567777775
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=64.67 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=73.5
Q ss_pred ccCCceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHH
Q 006662 183 FQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFAL 260 (636)
Q Consensus 183 ~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~ 260 (636)
..|-.|.+.-...+|..+...--.++.+.+ .+++ +|||+-||.|.|+..+++ +...++.+ |+++.+++..+
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~---d~Np~a~~~L~ 142 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLV--KPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAV---DLNPDAVEYLK 142 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEE---ES-HHHHHHHH
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcC--Ccce--EEEEccCCccHHHHHHhhhcCccEEEEe---cCCHHHHHHHH
Confidence 344445544455666666554445666553 4455 999999999999999998 56566666 77777766554
Q ss_pred H----cCC--CeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEE
Q 006662 261 E----RGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 261 e----rg~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Li 317 (636)
+ +++ .+....+|...+.- .+.||-|+++. +.....+|..+.+++|+||.+-
T Consensus 143 ~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 143 ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 3 333 35667788776654 78999998854 2233468899999999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00055 Score=69.21 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=61.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH-Hhhcccch--------------hhccccccCCCC----
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIGT--------------YQNWCEAMSTYP---- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgli~~--------------~~~~ce~~~~yp---- 537 (636)
..+|||+|||.|-.|.+|++++. +|+.+|.++..+..+ .+.|+-.. +.-+|..+..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 46999999999999999999865 556666665555553 34454211 111344443333
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.+||+|=..++|-.. .....+.++-.|-|.|||||++++
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 346654443333211 334457899999999999997544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00054 Score=72.67 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=66.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh---ccc-----chhhccccccCCCCCcc----c-ee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLI-----GTYQNWCEAMSTYPRTY----D-LI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gli-----~~~~~~ce~~~~yp~t~----D-l~ 543 (636)
..+|||+|||+|.++..|++.-.=..+++++|.+..+|..+.++ ... ++..|.++.+ .+|..+ + ++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEE
Confidence 46799999999999998877611024689999999999998876 221 1222333322 233333 2 34
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.+...|.... .-+...+|-++-+.|+|||.++|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4434444432 334568999999999999999985
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0055 Score=60.12 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=67.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
...+||||||+|..+..|++. ++..+.. |+++.+.+. |+.++..+...+.|...- +..++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~lat---DiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLAT---DINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEe---cCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCC
Confidence 447999999999999999886 4455555 888777665 444455555555554322 23388999998765
Q ss_pred ccccccCh--------------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYD--------------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~--------------------~~~L~el~RvLKPGG~Liis~p 321 (636)
..+-.+++ .+++..+..+|.|.|.|++..-
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 53322221 2567778888999999999864
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0063 Score=65.40 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+.++|||||++|.|+..|++++..++++ |..+ +.........+.....+..+...+.+.+|.++|- ...
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AV---D~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD-----mve 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAV---DNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD-----MVE 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEE---echh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe-----ccc
Confidence 34599999999999999999999888877 5332 2222223345666666655543336789999994 345
Q ss_pred ChHHHHHHHHhcccCC--cEEEEE
Q 006662 298 YDGLYLIEVDRVLRPG--GYWILS 319 (636)
Q Consensus 298 d~~~~L~el~RvLKPG--G~Liis 319 (636)
.|...+.-|.++|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 7788888889998776 345554
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=69.18 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=73.9
Q ss_pred hhhccCCCCCcceEeeecccchhhhhhhcCCCe-EEEEecCCCCCccchHHHHhhcccchh---hcc--c-cccCCCCCc
Q 006662 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVIYERGLIGTY---QNW--C-EAMSTYPRT 539 (636)
Q Consensus 467 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~eRgli~~~---~~~--c-e~~~~yp~t 539 (636)
+.+.|.+ =+.|.|||+|||-|-+...|+..+- .|+-+=|.... .+|+-+-+-++|.- |-. . |.++. ..+
T Consensus 107 l~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~ 182 (315)
T PF08003_consen 107 LLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA 182 (315)
T ss_pred HHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhccc-cCC
Confidence 3333433 4578999999999999999988865 45555554433 56666666666521 111 1 33444 589
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
||+|-|.||+= ||=+--+.|.++-..|||||-+|+-
T Consensus 183 FDtVF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 183 FDTVFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCEEEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99999999875 3445578999999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0006 Score=69.17 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=65.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHH-HHhhcccch--------------hhccccccCCC---C-
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV-IYERGLIGT--------------YQNWCEAMSTY---P- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~-~~eRgli~~--------------~~~~ce~~~~y---p- 537 (636)
-.+|||.|||.|--+.+|++++. +|+.+|.++.-++. +.++|+-.. ++-++..+..+ +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35899999999999999999976 56777777666664 356777422 11234433333 2
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.+||+|--.++|... .....+.++-.|.++|+|||.+++
T Consensus 115 ~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 367776655544432 333457899999999999996444
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0049 Score=64.26 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=65.3
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccCCCCCCCeeEE
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
.+.+++||=||.|.|..++++++..-.++ ..|+++..++.+++-. +.+.+.. .. ..-..++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~---mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVD---FVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeE---EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEE
Confidence 44567999999999999999999853322 2377888888887632 2233332 11 11123689999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+.-.. .+..+.+.+.|.|+|||.++...
T Consensus 144 IvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 144 ICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 97432 33678899999999999999974
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0023 Score=67.74 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---------CCEEEEcCcCCchHHHHHHHHHc----CC---C
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALER----GV---P 265 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------~v~vv~i~p~Dis~a~l~~A~er----g~---~ 265 (636)
....+.+.+++....+. +|||-.||+|.|...+.+. .....++ |+++.+...|.-+ +. .
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~---ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGI---EIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEE---ES-HHHHHHHHHHHHHTTHHCBG
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEee---cCcHHHHHHHHhhhhhhcccccc
Confidence 55667777777544444 8999999999998887762 3333344 7777777766432 21 1
Q ss_pred eEEEEeccccCCCC--CCCeeEEEeccccccc--cc-----------------Ch-HHHHHHHHhcccCCcEEEEEeC
Q 006662 266 ALIGVMASIRLPYP--SRAFDMAHCSRCLIPW--GQ-----------------YD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~--~~sFDlV~~s~~L~h~--~~-----------------d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+...|....+.. .+.||+|+++.-+... .. .. ..++..+.+.|++||++++..|
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 24566665544432 4789999996544222 00 00 2578889999999999988876
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=66.05 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=63.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CCC------CCCCe
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LPY------PSRAF 283 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lpf------~~~sF 283 (636)
++|||||+++|.-+.+|+.. +..++.+ |.++...+.|++. |. .+.+..++..+ |+- ..++|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~ti---E~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAM---DINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 48999999999999988864 3455566 6666666666533 42 36666666433 221 13689
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
|+|+.-. ....-..++..+.++|+|||.+++.
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9998743 2222357888889999999998886
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00063 Score=67.84 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=71.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCcc----chHHHHhhcccchhhccccccC---C-C-CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMS---T-Y-PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~----~l~~~~eRgli~~~~~~ce~~~---~-y-p~t~Dl~H~~ 546 (636)
-..+||+|||.|.|..+|+.. |= .|++.++...+ .+..+.++||--+.--.|.+.. . + |.+.|.||.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-
Confidence 339999999999999999753 11 35555555433 4445556666222222223332 1 2 489998887
Q ss_pred ccccc-------CCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC
Q 006662 547 SIFSL-------YKDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM 594 (636)
Q Consensus 547 ~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~ 594 (636)
.|.. .+.|=--+..|-++-|+|+|||.+.+ ||..++.+.+.+.+...
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5551 12332235899999999999999998 57777888888876664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=68.84 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=66.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc----CCC-eEEEEeccccCCCCCCCeeEEEecccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER----GVP-ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er----g~~-~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
.+|||++||+|.++..++.. +. .++.+ |+++.+++.++++ +.. ..+...|...+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~---Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLN---DINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--
Confidence 38999999999999999875 42 34444 8888888877643 332 4466666654321145799998853
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ..+..++....+.+++||++.++.
T Consensus 134 --~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 --F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 244678888788899999999984
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0012 Score=70.91 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=70.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCC---CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY---PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~y---p~t~Dl~H~~~~f 549 (636)
...|||.+||+|++...+...+ .+|+..|....++..+.+. |+-. ++--+..+... +.+||+|-++-=|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 5689999999999966554443 2556667776677654432 4432 12112222223 3689999886333
Q ss_pred cc---CCC---CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCC
Q 006662 550 SL---YKD---RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 596 (636)
Q Consensus 550 s~---~~~---~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W 596 (636)
.. ... ......+|-|+-|+|+|||++++--..+ ..++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 21 111 1235789999999999999988764332 144566777777
|
This family is found exclusively in the Archaea. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0036 Score=68.01 Aligned_cols=110 Identities=10% Similarity=-0.011 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASI 274 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~ 274 (636)
..+.+++.+.+.+...+ . +|||++||+|.++..|++....++++ |+++.+++.|+++ +. ++.+...|..
T Consensus 182 ~~~~l~~~v~~~~~~~~-~--~vlDl~~G~G~~sl~la~~~~~v~~v---E~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSK-G--DLLELYCGNGNFSLALAQNFRRVLAT---EIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred HHHHHHHHHHHHhhcCC-C--cEEEEeccccHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 34555556666553222 2 69999999999999998875556666 8888888888754 33 4677777765
Q ss_pred cCC--------C---C-----CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLP--------Y---P-----SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lp--------f---~-----~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++- + . ...||+|+.----.. -...++..+. +|++.++++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G---~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG---LDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECCCCCC---CcHHHHHHHH---cCCcEEEEEcC
Confidence 421 1 0 113798887442211 1134555554 48899999843
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=65.38 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=47.7
Q ss_pred CeeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeC-CCCccccccCCCCchhhhHHHHHHHHHHHHHhceEe
Q 006662 282 AFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP-PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p-~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~ 357 (636)
.||+|++++||+-...+. ..+++++.++|||||.|++.+- ...+..-. ......+....+.+++..+..++..
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG---~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG---GHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET---TEEEE---B-HHHHHHHHHHTTEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC---CEecccccCCHHHHHHHHHHcCCEE
Confidence 599999999998877777 5789999999999999999853 11211100 0112233334455777777777754
Q ss_pred ec
Q 006662 358 LI 359 (636)
Q Consensus 358 v~ 359 (636)
..
T Consensus 235 ~~ 236 (256)
T PF01234_consen 235 ED 236 (256)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=62.36 Aligned_cols=138 Identities=18% Similarity=0.298 Sum_probs=71.0
Q ss_pred CCcceEeeecccchhhhhhhcCCC-----eEEEEecCCCCCccchHHHHhhcccc---hhhccccccCCCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-----LWVMNTVPVEAKINTLGVIYERGLIG---TYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-----v~~mnv~~~~~~~~~l~~~~eRgli~---~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
+...+|||+||+.|||..++.++. |+.+-+.|.+.. .....+ +|=+- +.....+.+..-.+.+|+|-||
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeee--ecccchhhHHHhhhhhccccccCcceeccc
Confidence 678999999999999999999886 345555544211 111111 22110 0101111111111589999999
Q ss_pred cccccCCCC---cC--HH---HHHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCCceEEeccCCCCCCcceE
Q 006662 547 SIFSLYKDR---CE--ME---DVLLEMDRILRPEGSVIIR-----DDVDILVKIKSITDGMEWEGRIADHENGPRQREKI 613 (636)
Q Consensus 547 ~~fs~~~~~---c~--~~---~~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~ 613 (636)
+.+.....+ .. +. ..|.=+-..|||||.+|+. +..+.+..++...+..++-. -.-.++...|.-
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~K---p~~sr~~s~E~Y 175 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVK---PPSSRSESSEEY 175 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE----TTSBTTCBEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEE---CcCCCCCccEEE
Confidence 966543221 11 11 2222334679999998885 22356666766666543321 123445567888
Q ss_pred EEEEe
Q 006662 614 LFANK 618 (636)
Q Consensus 614 l~~~K 618 (636)
|||++
T Consensus 176 lv~~~ 180 (181)
T PF01728_consen 176 LVCRG 180 (181)
T ss_dssp EESEE
T ss_pred EEEcC
Confidence 88864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0081 Score=59.30 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=88.4
Q ss_pred cCcchhcchhh--HHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhc-CCCeEEEEecCCCCCccchHH---
Q 006662 443 DGVTAEMFRED--TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV-DDPLWVMNTVPVEAKINTLGV--- 516 (636)
Q Consensus 443 ~~~~~~~f~~d--~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~-~~~v~~mnv~~~~~~~~~l~~--- 516 (636)
+|+..+.|..| ...-|+-|+- -.+..|.. .....++|+|||+|+.+-.+. -.|. .-|..++..+..+..
T Consensus 2 ~gipD~~F~~~~~~p~TK~EIRa--l~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 2 PGIPDELFERDEGGPMTKEEIRA--LTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIER 76 (187)
T ss_pred CCCCchhhccCCCCCCcHHHHHH--HHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHH
Confidence 35556667777 3333444431 11333555 557799999999999886665 1122 334444544223322
Q ss_pred HHhh-cc--cchhhccc-cccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHH
Q 006662 517 IYER-GL--IGTYQNWC-EAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSIT 591 (636)
Q Consensus 517 ~~eR-gl--i~~~~~~c-e~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~ 591 (636)
..+| |+ +-++..+. +.++..| +||.|-. .. . -.++.||-....-|||||.+|.. -+.+.+.++-+..
T Consensus 77 N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI-----GG-g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~ 148 (187)
T COG2242 77 NAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI-----GG-G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEAL 148 (187)
T ss_pred HHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE-----CC-C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHH
Confidence 2222 22 11222222 4555556 7776655 21 2 67899999999999999999997 5777888888888
Q ss_pred hcCCC-ceE
Q 006662 592 DGMEW-EGR 599 (636)
Q Consensus 592 ~~~~W-~~~ 599 (636)
+.+.+ ++.
T Consensus 149 ~~~g~~ei~ 157 (187)
T COG2242 149 EQLGGREIV 157 (187)
T ss_pred HHcCCceEE
Confidence 88988 554
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0069 Score=68.20 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=68.0
Q ss_pred cCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-CCCCCee
Q 006662 214 LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-YPSRAFD 284 (636)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f~~~sFD 284 (636)
..++. +|||+++|.|.=+.++++. .-.++.. |+++..++...++ |+ ++.+...|...+. ...+.||
T Consensus 111 ~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~---D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVAN---EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcC
Confidence 34554 9999999999888888775 2234455 7787776655433 44 3455656665543 3346799
Q ss_pred EEE----ecccccccccCh------------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAH----CSRCLIPWGQYD------------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~----~s~~L~h~~~d~------------------~~~L~el~RvLKPGG~Liis~p 321 (636)
.|+ |+..- .+..++ ..+|..+.+.|||||+++.++-
T Consensus 186 ~ILvDaPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 186 AILLDAPCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred eEEEcCCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 999 55322 111122 3678889999999999999965
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0094 Score=62.57 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc---CCCeEEE--Eec--cccCCCCCCCeeEEEec
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER---GVPALIG--VMA--SIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~--~~d--~~~Lpf~~~sFDlV~~s 289 (636)
.+++|||+|||+|.-+..+.+. + ....+...|.|+.++++++.- ....... ... ....++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3458999999999755544443 2 222444458899999887532 2111100 000 1112232 34999999
Q ss_pred ccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++|....+.. ..+++.+.+.+.+ +|+|..|
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 9998877532 5677777777765 8999987
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00033 Score=62.67 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
-+|||+|||.|.|..++.+.. ..++..+|-.+..+.++..+ |+ +.+++ |+-+....++ ..||+|=++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 379999999999999998775 45666666664444444331 11 12222 2222222344 88999999888
Q ss_pred cccCC-----CCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYK-----DRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|.... .+-....++.++.|+|||||.+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 87431 1124568899999999999999873
|
... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0018 Score=72.12 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=61.6
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccc-ccc--CC--CCCccceee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAM--ST--YPRTYDLIH 544 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~--~~--yp~t~Dl~H 544 (636)
....+|||||||.||++.+|++. + .-.|+..|.+...+..+.++ |+--.+.--+ ..+ .. -+.+||.|-
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 33579999999999999888764 2 12355556666676665443 4410010011 122 11 137899998
Q ss_pred ec------cccccCCC------CcC-------HHHHHHHHhhcccCCcEEEEE
Q 006662 545 AD------SIFSLYKD------RCE-------MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 545 ~~------~~fs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++ |++..... .-+ -..+|-++-|+|||||.++++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 65 33331110 000 137999999999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0042 Score=62.64 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=91.6
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccc--hhhccccccCCCCCccceeeeccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIG--TYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~--~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
+.. +.-+-|||+|||+|--|+.|.+.+- -.+.+|.+..||.++.||-+=| ++.|..|.+++=|.|||-+-+.+-
T Consensus 46 lp~-~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 46 LPG-PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCC-CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee
Confidence 444 5789999999999999999998873 1346677889999999977765 334888999888999995322111
Q ss_pred cc---cCCCCcCHH-----HHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCce-EEeccCCCCCCcceEEEE
Q 006662 549 FS---LYKDRCEME-----DVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 616 (636)
Q Consensus 549 fs---~~~~~c~~~-----~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 616 (636)
.. .-...|..+ .++--+-..|.+|+..++. .+.+.++.|..-+..--..- .++|.-.+..++-..||.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 11 111223333 4566689999999999998 44555555555443322221 234443233344445555
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=61.36 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC-CCCCCCee
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSRAFD 284 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L-pf~~~sFD 284 (636)
..+.+++||-||-|.|..++++++... +..+...|++++.++.+++.. +.+.+...|.... .-...+||
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 344457999999999999999999852 112223377889999987653 2244555554332 21234899
Q ss_pred EEEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|++-. ..+..+. ...+++.+.|.|+++|.++...
T Consensus 152 vIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999733 2121111 1689999999999999999983
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0063 Score=60.14 Aligned_cols=128 Identities=16% Similarity=0.239 Sum_probs=75.6
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHH
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~e 261 (636)
|.....|.+... ....+..-+.+..++.. ..+. ++||+-||+|.++.+.+.+|. .++-+ |.+...++..++
T Consensus 10 gr~l~~p~~~~~-RPT~drvrealFniL~~~~~~g~--~vLDLFaGSGalGlEALSRGA~~v~fV---E~~~~a~~~i~~ 83 (183)
T PF03602_consen 10 GRKLKTPKGDNT-RPTTDRVREALFNILQPRNLEGA--RVLDLFAGSGALGLEALSRGAKSVVFV---EKNRKAIKIIKK 83 (183)
T ss_dssp T-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-SEEEEE---ES-HHHHHHHHH
T ss_pred CCEecCCCCCCc-CCCcHHHHHHHHHHhcccccCCC--eEEEcCCccCccHHHHHhcCCCeEEEE---ECCHHHHHHHHH
Confidence 344445544322 33345555666666653 2444 999999999999999999975 44444 777777766654
Q ss_pred c----CC--CeEEEEecccc-CC---CCCCCeeEEEecccccccccCh--HHHHHHHH--hcccCCcEEEEEeC
Q 006662 262 R----GV--PALIGVMASIR-LP---YPSRAFDMAHCSRCLIPWGQYD--GLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 262 r----g~--~~~~~~~d~~~-Lp---f~~~sFDlV~~s~~L~h~~~d~--~~~L~el~--RvLKPGG~Liis~p 321 (636)
+ +. ...+...|... ++ .....||+|+.-. ++.... ..++..+. .+|+++|.+++...
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 4 22 25566566322 21 2467899999865 333332 56777776 79999999999864
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.026 Score=55.96 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=60.5
Q ss_pred EEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~----erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
+++|||+|.|.-+.-|+= -...++-+ |.....+.+.+ +-+. ++.+....++. +....+||+|++ +++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~Lv---Es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a-RAv- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLV---ESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA-RAV- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEE---ESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE-ESS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEE---eCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe-ehh-
Confidence 799999999965555543 34444455 54555444432 3354 37777777766 556788999998 444
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.....++.-+...|++||.+++.
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEEE
Confidence 24468899999999999998887
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0053 Score=63.75 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYP 279 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~ 279 (636)
..++.|.+.+...+++ +|||||+|.|.++..|++++..++.+ +++..+++..+++. .++.+..+|+...+++
T Consensus 17 ~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~ai---EiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 17 NVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAI---EIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEE---EeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 3567777777666655 99999999999999999997666666 66777777666553 4578888898888887
Q ss_pred CC-CeeEEEecccc
Q 006662 280 SR-AFDMAHCSRCL 292 (636)
Q Consensus 280 ~~-sFDlV~~s~~L 292 (636)
+. .++.|+++.-.
T Consensus 92 ~l~~~~~vVaNlPY 105 (259)
T COG0030 92 SLAQPYKVVANLPY 105 (259)
T ss_pred hhcCCCEEEEcCCC
Confidence 54 68888887644
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00043 Score=66.45 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=79.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc-CCC--e---EEEEec----cccCCCCCCCeeEEEe
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER-GVP--A---LIGVMA----SIRLPYPSRAFDMAHC 288 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er-g~~--~---~~~~~d----~~~Lpf~~~sFDlV~~ 288 (636)
+++||++|.|.-.++..|....+...++--.|.++..++..++- ..+ . ...++. ..+.......||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 35899999996655555544432222333346666666555422 111 0 111110 1112223468999999
Q ss_pred cccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec-ccccEEEE
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI-QKKDLAIW 367 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~-~~~~~aIW 367 (636)
+.|+ -+.+..+.+++.+.+.|||.|.-++..| +....++ .+.+.+...++.... +.-+.+||
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~----kF~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSP------------RRGQSLQ----KFLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecC------------cccchHH----HHHHHHHhceeEEEecccHhHHHH
Confidence 9999 5554558899999999999999888877 2223333 344445555665543 44456777
Q ss_pred eCC
Q 006662 368 QKP 370 (636)
Q Consensus 368 qKp 370 (636)
|+-
T Consensus 173 qrh 175 (201)
T KOG3201|consen 173 QRH 175 (201)
T ss_pred HHH
Confidence 754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0019 Score=65.86 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=67.2
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC--Ce--EEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeec
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD--PL--WVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v--~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
... ...+.|+|+|+|.|.++.++.+. ++ +++ |.+ ..++.+.+..=|... =..-|.++|. +|++...
T Consensus 96 ~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp-~v~~~~~~~~rv~~~--~gd~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 96 FDF-SGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLP-EVIEQAKEADRVEFV--PGDFFDPLPV-ADVYLLR 165 (241)
T ss_dssp STT-TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-H-HHHCCHHHTTTEEEE--ES-TTTCCSS-ESEEEEE
T ss_pred ccc-cCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccH-hhhhccccccccccc--cccHHhhhcc-ccceeee
Confidence 455 67899999999999999999754 23 333 443 344444441111111 1134588899 9999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCC--cEEEEEeC
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPE--GSVIIRDD 580 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPg--G~~i~~d~ 580 (636)
+++-.+.+. +...||-.+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 888877653 4568999999999999 99999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.009 Score=65.16 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L 276 (636)
+.+++.+.+.+... + .++||++||+|.++..+++....++++ |.++.+++.++++ +. ++.+...|..+.
T Consensus 193 e~l~~~v~~~~~~~-~--~~vLDl~~G~G~~sl~la~~~~~v~~v---E~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-K--GDLLELYCGNGNFTLALARNFRRVLAT---EISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-C--CeEEEEeccccHHHHHHHhhCCEEEEE---ECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 44444555544321 2 369999999999999998875556666 8888888887654 33 467777776442
Q ss_pred -C-CC--------------CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 -P-YP--------------SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 -p-f~--------------~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+ +. ...||+|+.---. ..-...++..+.+ |++.++++..
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeC
Confidence 1 10 1258999875432 1111445555544 7888888843
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0068 Score=62.88 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CC----eEEEEeccccC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--VP----ALIGVMASIRL 276 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~----~~~~~~d~~~L 276 (636)
..++.|.+..++++++ .|||||.|||.++..|++.+..++.+ ++++.++....+|. .+ ..+..+|....
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~---E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAV---EIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEE---ecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 4566777777777776 99999999999999999998777766 66667776666653 33 55666676666
Q ss_pred CCCCCCeeEEEecccc
Q 006662 277 PYPSRAFDMAHCSRCL 292 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L 292 (636)
++| .||.++++.-.
T Consensus 120 d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLP--RFDGCVSNLPY 133 (315)
T ss_pred CCc--ccceeeccCCc
Confidence 555 69999986543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0085 Score=59.94 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhh-hc----cCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhhcc------c
Q 006662 456 LWKKRVTYYKSVD-YQ----LAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGL------I 523 (636)
Q Consensus 456 ~w~~~v~~y~~~~-~~----l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl------i 523 (636)
.+.+.++.|++-+ .. ++. .----||.+|||+|.-=-++-. +.+-|.- .|..+++-+++-.+-- +
T Consensus 52 ~yne~~~~ykrelFs~i~~~~gk-~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~---lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 52 IYNEIADSYKRELFSGIYYFLGK-SGKGDVLEVGCGTGANFKFYPWKPINSVTC---LDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcc-cCccceEEecccCCCCcccccCCCCceEEE---eCCcHHHHHHHHHHHhhccCcce
Confidence 3444555565422 11 333 3334579999999964344433 3333444 4445567666544321 1
Q ss_pred c-hhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 524 G-TYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 524 ~-~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
. .+|.-.|.+.-.+ .+||.|-+.-+.- +.-+....|-|+-|||||||.+|+-+.+
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 1 3333346666555 8999766522221 2234468999999999999999997643
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.014 Score=61.75 Aligned_cols=155 Identities=14% Similarity=0.206 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhccC--CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHH---HHHHHc----CC--------
Q 006662 202 DAYIDDIGKLINLK--DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQV---QFALER----GV-------- 264 (636)
Q Consensus 202 ~~~id~L~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l---~~A~er----g~-------- 264 (636)
...++.|..+.+.. .....+||--|||.|+++..|+..|...- +.+.|--|+ .++... +.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q---GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ---GNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccc---ccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 45666777766532 22345799999999999999998876432 224444443 122211 00
Q ss_pred -------------Ce-----------------EEEEeccccC---CCCCCCeeEEEecccccccccChHHHHHHHHhccc
Q 006662 265 -------------PA-----------------LIGVMASIRL---PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR 311 (636)
Q Consensus 265 -------------~~-----------------~~~~~d~~~L---pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 311 (636)
++ .+..+|..+. +-..++||+|+..+.+ .-..+--.++..+..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhcc
Confidence 00 0011111110 0112479999976544 444455789999999999
Q ss_pred CCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccc
Q 006662 312 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (636)
Q Consensus 312 PGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~ 361 (636)
|||+++=.+|-.+.-....+ ......++-..+.+..++++++|+.+.+.
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g-~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHG-VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCC-CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999999884432221111 12233455567888999999999998875
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0039 Score=62.77 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHH-------H----cCC-
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFAL-------E----RGV- 264 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~-------e----rg~- 264 (636)
+-....+..+.+.+.+.+++ ..+|||||.|......+-. ++. +++| ++.+...+.|. + .+.
T Consensus 25 Ei~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GI---Ei~~~~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 25 EISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGI---EILPELHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp GCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEE---E-SHHHHHHHHHHHHHHHHHHHHCTB-
T ss_pred ecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEE---EechHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444556666777666666 9999999999876665543 432 4455 44444333332 1 122
Q ss_pred --CeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEE
Q 006662 265 --PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 265 --~~~~~~~d~~~Lpf~~---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Lii 318 (636)
++.+..+|....++.. ...|+|+++... +.++....|.++..-||+|-+++-
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3444555543322111 346999998755 344446667888888988877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.004 Score=64.87 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+||||+||.|+++.+|++. .- .|+..|.+...+..+.++ |+ +-+++ |. ..+......||.|-++
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLD 147 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEc
Confidence 467999999999999877653 11 355667766676655443 43 22222 21 1222222569998765
Q ss_pred cccccCC------------CCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYK------------DRCEM-------EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~------------~~c~~-------~~~l~e~dRiLrPgG~~i~~ 578 (636)
-=.|... +.-++ ..+|-++-++|||||+++.+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4433210 00011 25899999999999999997
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=61.57 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=77.9
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh--cc--------cchhh-ccccccCCCCCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER--GL--------IGTYQ-NWCEAMSTYPRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR--gl--------i~~~~-~~ce~~~~yp~t~Dl 542 (636)
...++||++|||.|+++..+.+.+ + .+++-+|..++.+..+.+. .+ +-+.+ |--+-....+++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999998887764 3 3444555554566666543 00 00111 111111123689999
Q ss_pred eeeccccccCCC-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccC--CCCCCcceEE
Q 006662 543 IHADSIFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKIL 614 (636)
Q Consensus 543 ~H~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l 614 (636)
|=++.-...... .--....+-.+-|+|+|||.+++.- ..+.+..+.+.++..=..+..+..- .-+.+.-.++
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~ 228 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFT 228 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEE
Confidence 876543221111 1113577788999999999999852 2334444444433332233322211 1111235688
Q ss_pred EEEe
Q 006662 615 FANK 618 (636)
Q Consensus 615 ~~~K 618 (636)
+|.|
T Consensus 229 ~as~ 232 (270)
T TIGR00417 229 IGSK 232 (270)
T ss_pred EEEC
Confidence 8887
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.016 Score=64.56 Aligned_cols=99 Identities=22% Similarity=0.248 Sum_probs=77.0
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
++|-+|||.-.+...+.+-|.. +|.-.|+|.-.++....++ ....+...+...+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999887654 3333477777766665444 346788889999999999999999988887766
Q ss_pred cChH---------HHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYDG---------LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~~---------~~L~el~RvLKPGG~Liis~p 321 (636)
.+.. ..+.++.|+|+|||+++...-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 5543 356899999999999877643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0039 Score=69.41 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=62.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchh-hccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTY-QNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~-~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
....|||+|||.|+++.+|++..- -..|+..|.++.++..+.++ |+ +.+. +|..+....++ .+||.|=++.=
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 356899999999999988876510 02456667776777666443 33 1111 12222111233 68999875443
Q ss_pred cccCC------------CC-------cCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYK------------DR-------CEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~------------~~-------c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|... .. .....+|-++-++|||||.++++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 33210 00 112368999999999999999873
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=65.18 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=73.6
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC----CCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL----PYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L----pf~~~sFDlV 286 (636)
+++|||+=|=||.|+.+.+..|. .++++ |.|...++.|+++ +. ...+.++|+... .-....||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V---D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSV---DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEE---eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 34999999999999999999987 77788 9999999999865 32 356777775432 1224589999
Q ss_pred Eecc---cc-----cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSR---CL-----IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~---~L-----~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.-. +- .....+-..++..+.++|+|||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9721 10 01111224688899999999999999965
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0013 Score=62.86 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=49.2
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCc
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNW 325 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w 325 (636)
.+..-.....+|.++|.|+|++.++++|+..+. ..++++++|+|||||+|-++.|...+
T Consensus 32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 333334556789999999999999999988655 68999999999999999999986664
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=63.32 Aligned_cols=148 Identities=9% Similarity=0.016 Sum_probs=82.2
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh-ccc------------chh-hccccccCCCCCc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER-GLI------------GTY-QNWCEAMSTYPRT 539 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR-gli------------~~~-~~~ce~~~~yp~t 539 (636)
...++||++|||.|+.++.+.+.+ + .+|+-+|..+.+++++.+. .|. -+. .|--+-...-++.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 457899999999999988888764 4 3455555555688888752 111 011 1111111223468
Q ss_pred cceeeeccccccC--CCCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCceEEeccCCCCC-Ccc
Q 006662 540 YDLIHADSIFSLY--KDRCEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPR-QRE 611 (636)
Q Consensus 540 ~Dl~H~~~~fs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~~ 611 (636)
||+|=++--.... ..+---..++-.+-|.|+|||.++.... .+....+.+.++..--.+..+.+---+. ..-
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~W 306 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDW 306 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCce
Confidence 9998876211111 1111124688899999999999988643 2232334444444333333222111111 126
Q ss_pred eEEEEEecCCCCC
Q 006662 612 KILFANKKYWTAP 624 (636)
Q Consensus 612 ~~l~~~K~~w~~~ 624 (636)
..++|.|......
T Consensus 307 gF~~as~~~~~~~ 319 (374)
T PRK01581 307 GFHIAANSAYVLD 319 (374)
T ss_pred EEEEEeCCccccc
Confidence 6888888666443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.026 Score=56.71 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhc---C--CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC--
Q 006662 206 DDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-- 277 (636)
Q Consensus 206 d~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~---~--v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp-- 277 (636)
.+|.+...+ .++. +|+|+|+-.|+|+..++++ + +.++++.|.+.. ..+.+.++|...-+
T Consensus 34 ~el~~k~~i~~~~~--~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 34 LELNEKFKLFKPGM--VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHhcCeecCCC--EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHH
Confidence 344443332 3444 9999999999999999887 2 567777665543 23566777765433
Q ss_pred ------CCCCCeeEEEecccc---cccccCh-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ------YPSRAFDMAHCSRCL---IPWGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ------f~~~sFDlV~~s~~L---~h~~~d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
+....+|+|+|-.+- -++..|. ..++.-...+|+|||.|++-..
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 234457999972221 1122122 3456667789999999999854
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.015 Score=66.38 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=46.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-------EEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccC-----CCCCC
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-------LAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRL-----PYPSR 281 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-------~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~L-----pf~~~ 281 (636)
..+|||.|||+|.|...++++.. ....+.+.|+++..+..++.+- ....+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 35899999999999988876521 1245566699999888776441 1222332221111 11125
Q ss_pred CeeEEEecccc
Q 006662 282 AFDMAHCSRCL 292 (636)
Q Consensus 282 sFDlV~~s~~L 292 (636)
.||+|+++--.
T Consensus 112 ~fD~IIgNPPy 122 (524)
T TIGR02987 112 LFDIVITNPPY 122 (524)
T ss_pred cccEEEeCCCc
Confidence 79999997644
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.043 Score=57.06 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecccc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR 275 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~ 275 (636)
+..|..+|...+|. +||+-|.|+|+++.++++. + -....+ |+++...+.|++. + ..+.+..-|+..
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tf---efH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTF---EFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEE---EecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 45678888888988 9999999999999999886 2 233455 7788777777643 3 346666667666
Q ss_pred CCCC--CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE-eCCCCccccccCCCCchhhhHHHHHHHHHHHHH
Q 006662 276 LPYP--SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS-GPPVNWESHWKGWNRTTEDLKSEQNGIETIARS 352 (636)
Q Consensus 276 Lpf~--~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis-~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~ 352 (636)
.-|. +..+|.|+.- + +.|..++--++.+||.+|.-+.+ .| =+++.++. -+++.+
T Consensus 169 ~GF~~ks~~aDaVFLD-----l-PaPw~AiPha~~~lk~~g~r~csFSP----------------CIEQvqrt-ce~l~~ 225 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLD-----L-PAPWEAIPHAAKILKDEGGRLCSFSP----------------CIEQVQRT-CEALRS 225 (314)
T ss_pred CCccccccccceEEEc-----C-CChhhhhhhhHHHhhhcCceEEeccH----------------HHHHHHHH-HHHHHh
Confidence 5544 6789998752 2 25556777788899987743333 33 23344443 346667
Q ss_pred hceEeec
Q 006662 353 LCWKKLI 359 (636)
Q Consensus 353 l~Wk~v~ 359 (636)
++|..+.
T Consensus 226 ~gf~~i~ 232 (314)
T KOG2915|consen 226 LGFIEIE 232 (314)
T ss_pred CCCceEE
Confidence 7886543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=61.61 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=77.1
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc-----cchhh-ccccccCCCCCccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL-----IGTYQ-NWCEAMSTYPRTYD 541 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl-----i~~~~-~~ce~~~~yp~t~D 541 (636)
...++|||+|||.|+.+..++++ ++ .+|+-+|..+..+.++.+. |+ +-+++ |--+-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45789999999999999999887 45 3444445554677777653 11 01111 11111122247899
Q ss_pred eeeeccccccCCC--CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcce
Q 006662 542 LIHADSIFSLYKD--RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREK 612 (636)
Q Consensus 542 l~H~~~~fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~ 612 (636)
+|=++. +..+.. .---+.++.++-|+|+|||.+++.- ..+.+..+.+.++..=-.+...-. ..-|.+...
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~ 231 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWS 231 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchhe
Confidence 987642 211110 0012467788999999999999852 123334444433333233332211 111222345
Q ss_pred EEEEEec
Q 006662 613 ILFANKK 619 (636)
Q Consensus 613 ~l~~~K~ 619 (636)
.++|.|.
T Consensus 232 f~~as~~ 238 (283)
T PRK00811 232 FTFASKN 238 (283)
T ss_pred eEEeecC
Confidence 6778774
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0051 Score=68.66 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCC-CCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY-PRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~y-p~t~Dl~H~ 545 (636)
...+||||+||.||.+.+|++. +- -.|+..|.++..+..+.++ |+ +-+.+ |.. .+..+ +..||.|-+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEE
Confidence 3568999999999998887653 11 1456667777788777554 44 22222 322 12223 478999876
Q ss_pred ccccccCCC---Cc---------C-------HHHHHHHHhhcccCCcEEEEE
Q 006662 546 DSIFSLYKD---RC---------E-------MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 546 ~~~fs~~~~---~c---------~-------~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|.--|.... += + -..+|-+.-+.|||||.++++
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 543332211 00 1 136788999999999999997
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0062 Score=65.20 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=62.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhccc------c-hhhcc-ccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI------G-TYQNW-CEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli------~-~~~~~-ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||+|.++..|.+++. +|+.+|.+++++.++.+|.-- + ..-.+ +..+...+.+||+|=|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 46899999999999999998753 678889888999998887320 0 11111 1223334689999888766
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+-.+... .+..++..+.++ .+||. ||+.
T Consensus 222 L~H~p~~-~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred EEecCHH-HHHHHHHHHHhh-cCCEE-EEEe
Confidence 6544322 233456666654 45555 5553
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=61.18 Aligned_cols=137 Identities=11% Similarity=0.070 Sum_probs=80.4
Q ss_pred CcceEeeecccchhhhhhhcC----CCeEEEEecCCCCCccchHHHHh-----hcc---cch-hhccccccCCCC--Ccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKINTLGVIYE-----RGL---IGT-YQNWCEAMSTYP--RTY 540 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~e-----Rgl---i~~-~~~~ce~~~~yp--~t~ 540 (636)
.-++|+|+|||-|++-+.+.. .+. -+..+|.++..++.+.+ .|| +.. .+|..+ ..+ ..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~---~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT---SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCc
Confidence 578999999998877554332 122 23444655555554433 333 111 112222 232 689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEE
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD---VDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 617 (636)
|+|=+.-+ .|.+.-+.+.+|..+-|.|||||+++++-- ...+..+-....-=.|+....-|-.++ +-.-++|++
T Consensus 197 DlVF~~AL--i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r 273 (296)
T PLN03075 197 DVVFLAAL--VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIAR 273 (296)
T ss_pred CEEEEecc--cccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEE
Confidence 99888511 233345668999999999999999999841 222222111111117888766555444 457899999
Q ss_pred ecCC
Q 006662 618 KKYW 621 (636)
Q Consensus 618 K~~w 621 (636)
|.--
T Consensus 274 ~~~~ 277 (296)
T PLN03075 274 KPGG 277 (296)
T ss_pred eecC
Confidence 9663
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.01 Score=60.63 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=67.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-------c--cchhhccccccCCCCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-------L--IGTYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-------l--i~~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
...+|||+|||+|+|.-.|++.++ -.|..+|.+.+++.--+... . |. +.+|-+-. .|++-+|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~------~d~~~~D 145 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIF------PDFATFD 145 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcC------CCceeee
Confidence 467999999999999999998864 44566677656666533221 1 11 11333322 2443333
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~ 599 (636)
-.|. .+..+|-.|.+.|+| |.+|+= |. ...++++...+..+.|++.
T Consensus 146 vsfi------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 146 VSFI------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred EEEe------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 3332 234478899999999 877762 32 2356666666778888765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0035 Score=70.05 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=61.7
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
..+|||||||.|+++.+|++. +- ..|+.+|.+++.+..+.++ |+ +-+.+ |..+....++.+||+|=++.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 568999999999999888764 11 2355556665676666543 44 22222 33222223458899986543
Q ss_pred ------ccccC------CCCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006662 548 ------IFSLY------KDRCEM-------EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ------~fs~~------~~~c~~-------~~~l~e~dRiLrPgG~~i~~ 578 (636)
++... ...-++ ..+|-++-|+|||||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 33210 011111 35899999999999999975
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.022 Score=58.81 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=71.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccc-cCCCC-CccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA-MSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~-~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
.--.|-|||||-|-.|. =...+|..|-+++.+.. +| -|.- -.+.+ +|.|++-+ -+|+
T Consensus 180 ~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~-----------V~-----~cDm~~vPl~d~svDvaV~--CLSL-- 238 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS-SERHKVHSFDLVAVNER-----------VI-----ACDMRNVPLEDESVDVAVF--CLSL-- 238 (325)
T ss_pred CceEEEecccchhhhhh-ccccceeeeeeecCCCc-----------ee-----eccccCCcCccCcccEEEe--eHhh--
Confidence 35578999999886654 23457899999888765 11 1321 12233 89998553 0111
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHH---HHHHHHHhcCCCceEEeccC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVDIL---VKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~---~~~~~~~~~~~W~~~~~~~e 604 (636)
=.-++.+.+.|..|||+|||.++|.+-..-. ....+-+.+|..+..-.|.+
T Consensus 239 Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 239 MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 1245779999999999999999997644322 33445577888888766655
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0059 Score=68.34 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=60.0
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCC-C-Cccceeeec--
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY-P-RTYDLIHAD-- 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~y-p-~t~Dl~H~~-- 546 (636)
...|||+|||.|+++.+|++. +- -.|+.+|.+..++..+.++ |+ ..+.-.+.....+ | .+||.|=++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 578999999999988777642 11 1455667776777665443 44 1111112222222 3 679988753
Q ss_pred ----cccccCC------CCcCH-------HHHHHHHhhcccCCcEEEEEe
Q 006662 547 ----SIFSLYK------DRCEM-------EDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ----~~fs~~~------~~c~~-------~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|.... ...++ ..+|-++-|+|||||.++++.
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3332110 11112 268999999999999999973
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0077 Score=61.58 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=77.3
Q ss_pred ceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcc--cchhhccc-cccCCCC--Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWC-EAMSTYP--RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~~~c-e~~~~yp--~t~Dl~H~~~~ 548 (636)
..+|++|||.|.|=.+|+++ +++.+-+-..... .-+..|-+.|| +-++..=+ +-+..++ .+.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 58999999999999999865 3455544443332 46667778888 55554222 3444454 49998887 5
Q ss_pred cc-------cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHH-HHHHHhc
Q 006662 549 FS-------LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVK-IKSITDG 593 (636)
Q Consensus 549 fs-------~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~-~~~~~~~ 593 (636)
|. ..+.|=--+..|-++.|+|+|||.+.+. |..++.+. +.+....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 66 2234444468999999999999999994 76666665 5555443
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0046 Score=63.84 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=69.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhhc--------cccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQN--------WCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~--------~ce~~~~yp~t~Dl~H~~~ 547 (636)
.++|||+|||.|-....|+..+ -+|+.+|....++.++-+.-= -.+.-. -|+...-.=..||.|-|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 5789999999999999999887 588899999889998887621 011100 0111111112399888855
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+.-.+ -+.+.++--+=+.|+|||.++|++-.
T Consensus 167 vleHV---~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHV---KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHH---hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 54433 45578899999999999999998643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.085 Score=52.33 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHH
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~e 261 (636)
|..+.+|.+.. .....+..-+.+..++.. ..|. ++||+=+|+|.++.+.+.+|.. ++-+ |.+....+..++
T Consensus 11 gr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~--~~LDlFAGSGaLGlEAlSRGA~~~~~v---E~~~~a~~~l~~ 84 (187)
T COG0742 11 GRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGA--RVLDLFAGSGALGLEALSRGAARVVFV---EKDRKAVKILKE 84 (187)
T ss_pred CCcccCCCCCC-cCCCchHHHHHHHHhccccccCCC--EEEEecCCccHhHHHHHhCCCceEEEE---ecCHHHHHHHHH
Confidence 33444554432 234456666677777753 3444 9999999999999999999753 3334 666666666654
Q ss_pred c----C--CCeEEEEeccccC-CCCCC--CeeEEEecccccccccChHHHHHH--HHhcccCCcEEEEEeC
Q 006662 262 R----G--VPALIGVMASIRL-PYPSR--AFDMAHCSRCLIPWGQYDGLYLIE--VDRVLRPGGYWILSGP 321 (636)
Q Consensus 262 r----g--~~~~~~~~d~~~L-pf~~~--sFDlV~~s~~L~h~~~d~~~~L~e--l~RvLKPGG~Liis~p 321 (636)
+ + ....+...|+... +-... .||+|+.---+..-..+....+.. -..+|+|+|.+++...
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 4 2 3455666665432 22222 499999865442111111222233 4578999999999865
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=50.50 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=57.0
Q ss_pred Eeeecccchh--hhhhhcCCCeEEEEecCCCCCccchHHHHhhcc------cc-hhhccccccCCCCC--ccceeeeccc
Q 006662 480 LLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IG-TYQNWCEAMSTYPR--TYDLIHADSI 548 (636)
Q Consensus 480 vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------i~-~~~~~ce~~~~yp~--t~Dl~H~~~~ 548 (636)
++|+|||.|. +.+.+......+.. .|.+..++.....+.. +. ...+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554322333 4554445555333331 11 11122222233433 89998 6333
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 789999999999999999998654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.006 Score=65.50 Aligned_cols=93 Identities=18% Similarity=0.070 Sum_probs=55.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccCC-C--CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMST-Y--PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~-y--p~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.+++.|++.---.-.|+.+|..+.++..+.+ .|+ .-++..+..... . ...||+|.++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~--- 156 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVT--- 156 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEEC---
Confidence 4689999999999999887531000013444555566666554 344 111212222211 1 2579998873
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..++.+.-.+-|.|+|||.+++-.
T Consensus 157 ------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 ------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 223344556678999999998854
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.023 Score=58.71 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHc---------CCCeEEEEeccccC-CCCCC-Cee
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL-PYPSR-AFD 284 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~L-pf~~~-sFD 284 (636)
.+++||=||-|.|..+..+++.. + .+.. .|+++..++.|++- ...+.+...|.... .-..+ .||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~---VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITV---VEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEE---EES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEE---EecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 45699999999999999999874 2 2222 37777888877642 23567777775432 11223 899
Q ss_pred EEEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 153 vIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99973221 22111 1689999999999999999975
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.036 Score=59.88 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHc----CCC--eE
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALER----GVP--AL 267 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~er----g~~--~~ 267 (636)
.||..+...--.+++++. ..|. +|||+=+|.|.|+..++..+.. ++++ |+++.+++..+++ +.. +.
T Consensus 169 v~Fsprl~~ER~Rva~~v--~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~---diNP~A~~~L~eNi~LN~v~~~v~ 241 (341)
T COG2520 169 VYFSPRLSTERARVAELV--KEGE--TVLDMFAGVGPFSIPIAKKGRPKVYAI---DINPDAVEYLKENIRLNKVEGRVE 241 (341)
T ss_pred eEECCCchHHHHHHHhhh--cCCC--EEEEccCCcccchhhhhhcCCceEEEE---ecCHHHHHHHHHHHHhcCccceee
Confidence 445444443344566554 3355 9999999999999999998654 5566 8898888877654 322 56
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 268 ~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+|....+...+.||-|++... .....++....+.|++||.+-+-..
T Consensus 242 ~i~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 242 PILGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred EEeccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 777888777766688999998542 2446788899999999999988754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=53.40 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCcceEeeecccchh-hhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCC
Q 006662 475 GRYRNLLDMNAYLGG-FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 475 ~~~r~vlD~~~g~gg-faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
++.+.|+|+|||+|. +|..|.+.+. .|+.+|.++..++-+.++|+-.+..|+-+.-...=+.+|+|-+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys-------- 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS-------- 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE--------
Confidence 345779999999996 9999998876 6667788778888899998755554433211111167888888
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
||-..+.+..+.++++++.=++.+.-..
T Consensus 84 -----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 -----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6677888899999999999998876544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.028 Score=59.76 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHH----cCCC--eEEEEeccccCCCCCCCeeEEEecc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALE----RGVP--ALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~e----rg~~--~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
..+.|||+|||+|.++...++.|.. +..+ +.+ +|.+.|++ +... +.+..+.++++.+| +..|+|++-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAv---EAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAV---EAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEE---ehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEecc
Confidence 3458999999999988888887643 3333 333 45555543 2222 34444455555555 5699999854
Q ss_pred cccccccCh--HHHHHHHHhcccCCcEEEEE
Q 006662 291 CLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 291 ~L~h~~~d~--~~~L~el~RvLKPGG~Liis 319 (636)
.- .+.-+. -...-...|.|+|.|.++=.
T Consensus 252 MG-~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 252 MG-YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred ch-hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 33 222122 12222356999999998755
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.056 Score=55.30 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEE-EEeccccC
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALI-GVMASIRL 276 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~-~~~d~~~L 276 (636)
.|...+.. ..+.+.+. -..+.+||||+-||.|+..++++|. .+.++ |....|+..-.+..+.+.. ...+...+
T Consensus 62 RG~~KL~~-ale~F~l~-~k~kv~LDiGsSTGGFTd~lLq~gAk~Vyav---DVG~~Ql~~kLR~d~rV~~~E~tN~r~l 136 (245)
T COG1189 62 RGGLKLEK-ALEEFELD-VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAV---DVGYGQLHWKLRNDPRVIVLERTNVRYL 136 (245)
T ss_pred cHHHHHHH-HHHhcCcC-CCCCEEEEecCCCccHHHHHHHcCCcEEEEE---EccCCccCHhHhcCCcEEEEecCChhhC
Confidence 44444433 33334432 2245999999999999999999965 33444 7777777666555554433 22233322
Q ss_pred C---CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccc-----cccCCCCchhhhHHHHHHHHH
Q 006662 277 P---YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES-----HWKGWNRTTEDLKSEQNGIET 348 (636)
Q Consensus 277 p---f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~-----~~~~W~~t~e~l~~~~~~ie~ 348 (636)
. +. +..|+|+|--+++. ...+|..+..+|+|+|.++...-|. +.. ..++--+.++.......++++
T Consensus 137 ~~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQ-FEagr~~v~kkGvv~d~~~~~~v~~~i~~ 210 (245)
T COG1189 137 TPEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQ-FEAGREQVGKKGVVRDPKLHAEVLSKIEN 210 (245)
T ss_pred CHHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecch-hhhhhhhcCcCceecCcchHHHHHHHHHH
Confidence 2 22 36789998666633 3588999999999999888864321 110 122223445555667778899
Q ss_pred HHHHhceEeec
Q 006662 349 IARSLCWKKLI 359 (636)
Q Consensus 349 la~~l~Wk~v~ 359 (636)
.+...+|+...
T Consensus 211 ~~~~~g~~~~g 221 (245)
T COG1189 211 FAKELGFQVKG 221 (245)
T ss_pred HHhhcCcEEee
Confidence 99999997653
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0068 Score=58.28 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=48.0
Q ss_pred CCCCccchHHHHhhcc---------cchhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006662 507 VEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 576 (636)
Q Consensus 507 ~~~~~~~l~~~~eRgl---------i~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i 576 (636)
+|.+++||.++.+|-- +..++.=++.++ ++ .+||+|=+..++... .+....|-|+.|+|||||.++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEE
Confidence 4667789998866521 223332234443 54 799998775544433 356899999999999999999
Q ss_pred EEeC
Q 006662 577 IRDD 580 (636)
Q Consensus 577 ~~d~ 580 (636)
|.|-
T Consensus 79 i~d~ 82 (160)
T PLN02232 79 ILDF 82 (160)
T ss_pred EEEC
Confidence 8764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=64.89 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=66.9
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCC-------CCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST-------YPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~-------yp~t~Dl~ 543 (636)
...|||||||.||++.+|++. +- -.|+..|.+..++..+.++ |+ ..+.-.|..... .+.+||.|
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEE
Confidence 468999999999999888764 10 1345556666677666543 33 111112222222 23689987
Q ss_pred eec------cccccCC------CCcC-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcC
Q 006662 544 HAD------SIFSLYK------DRCE-------MEDVLLEMDRILRPEGSVIIRD----DVDILVKIKSITDGM 594 (636)
Q Consensus 544 H~~------~~fs~~~------~~c~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~~ 594 (636)
=++ |++.... ...+ ...+|.++-|+|||||.++.+. ..+....|+.+++..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 754 2332110 0011 2478999999999999999863 223444555555543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.016 Score=54.99 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=53.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+..++|+|||.|-+....+-. .-.++++ |+.+.+++.+.++. +++.+.+++...+-+..+.||.++.+.-+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGf---DIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGF---DIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEee---ecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 448999999999887555443 3345566 88889988876553 45677888888887778999999987755
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.065 Score=57.55 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=62.8
Q ss_pred EEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcCC-----CeEE--EEecccc----CCC--CCCCe
Q 006662 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-----PALI--GVMASIR----LPY--PSRAF 283 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg~-----~~~~--~~~d~~~----Lpf--~~~sF 283 (636)
.++|+|||.|.=+..|++. +. .+...|.|+|.++++.+.++-. .+.+ ..++... ++- .....
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 8999999999876666553 21 1234455999999988765422 2333 3343322 221 12345
Q ss_pred eEEEecc-cccccccCh-HHHHHHHHh-cccCCcEEEEEe
Q 006662 284 DMAHCSR-CLIPWGQYD-GLYLIEVDR-VLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~-~L~h~~~d~-~~~L~el~R-vLKPGG~Liis~ 320 (636)
.+++... .+-.+.+.. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 6776644 444444333 579999999 999999999974
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.027 Score=57.68 Aligned_cols=128 Identities=11% Similarity=0.128 Sum_probs=70.5
Q ss_pred CcceEeeecccchhhhhhh----cCCCeEEEEecCCCCCccchHHHHh----hcc---cchhh-ccccccCC----C-CC
Q 006662 476 RYRNLLDMNAYLGGFAAAL----VDDPLWVMNTVPVEAKINTLGVIYE----RGL---IGTYQ-NWCEAMST----Y-PR 538 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l----~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---i~~~~-~~ce~~~~----y-p~ 538 (636)
..++|||+|||+|.-+.+| .... .|+-+|..+..+.++.+ -|+ |.+.+ |..+.+.. . ..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3779999999999644333 2222 22333444344444433 344 22222 33333222 2 36
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------C----H----HHHHHHHHH----HhcCCCc
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------D----V----DILVKIKSI----TDGMEWE 597 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~----~----~~~~~~~~~----~~~~~W~ 597 (636)
+||+|-+++-= -....++-++-|.|||||.+|+-+ . . .....|+++ ...=+|.
T Consensus 144 ~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 144 EFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 89999874321 233467888899999999998631 1 0 122344443 3344566
Q ss_pred eEEeccCCCCCCcceEEEEEec
Q 006662 598 GRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 598 ~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
..+.-. .+.+++++|.
T Consensus 218 ~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI------GDGVTLCRRL 233 (234)
T ss_pred EEEEEe------CCccEEEEEe
Confidence 555432 3678888875
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.02 Score=64.28 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=63.8
Q ss_pred cchhcchhhHHHHHH---HHHHHHHhhhccCCCCC----cceEeeecccchhhhhhh------c--CCCeEEEEecCCCC
Q 006662 445 VTAEMFREDTALWKK---RVTYYKSVDYQLAQPGR----YRNLLDMNAYLGGFAAAL------V--DDPLWVMNTVPVEA 509 (636)
Q Consensus 445 ~~~~~f~~d~~~w~~---~v~~y~~~~~~l~~~~~----~r~vlD~~~g~ggfaa~l------~--~~~v~~mnv~~~~~ 509 (636)
.+-|.|+.|..++.. .|. +.+...+.. .+ .-+|||+|||.|-...+- . ...|+++ +.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~--~al~D~~~~-~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAV-----Ek 222 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIE--EALKDRVRK-NSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAV-----EK 222 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHH--HHHHHHHTT-S-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEE-----ES
T ss_pred ccHhhHhcCHHHHHHHHHHHH--HHHHhhhhh-ccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEE-----cC
Confidence 467889999765553 232 111122233 32 467999999999885211 1 1233332 33
Q ss_pred Ccc---chH-HHHhhcc---cchhhccccccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 510 KIN---TLG-VIYERGL---IGTYQNWCEAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 510 ~~~---~l~-~~~eRgl---i~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
+++ +++ .+.+.|+ |.++| +..... |.-.|+|=+ -++..+...-.++..|.-.||.|+|||.+|=
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 222 332 2244454 44444 444444 678898764 3333333334778899999999999998763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.079 Score=53.94 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=67.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHH----HcCC--CeEEEEecccc-C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIR-L 276 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~----erg~--~~~~~~~d~~~-L 276 (636)
.+..++.+...+ ++||||.=||.-+..+|.. +-.++.+ |++++..+.+. ..++ .+.+.++.+.+ |
T Consensus 64 fl~~li~~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~---eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 64 FLQMLIRLLNAK--RTLELGVFTGYSALAVALALPEDGRVVAI---EIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred HHHHHHHHhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEE---ecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 333333333444 8999998888766666654 4445555 66666655543 2343 24555554322 1
Q ss_pred -----CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 -----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 -----pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+.++||+++. .+|-.+-..++.++.++||+||.+++.-
T Consensus 139 d~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 145789999975 3555444688999999999999999973
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.042 Score=57.13 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf 278 (636)
...++.|.+.+...++. .|||||+|.|.++..|++.+..++.+ +.++...+..+++ ..++.+...|...+..
T Consensus 16 ~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~v---E~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAV---EIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEE---ESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceee---cCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 55677888887666555 99999999999999999987555555 6677777777664 3468888889888776
Q ss_pred CC---CCeeEEEecccccccccChHHHHHHHHhcccC
Q 006662 279 PS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312 (636)
Q Consensus 279 ~~---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP 312 (636)
+. +.-..|+++.-. . -...++..+...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 54 456677775432 2 224566666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.027 Score=64.41 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-c------------cchhh-ccccccCCCCCcc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L------------IGTYQ-NWCEAMSTYPRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l------------i~~~~-~~ce~~~~yp~t~ 540 (636)
.+.++|||+|||.|+.+..+.+++- +..|+-+|..+..++.+.+.- + +-+++ |-=+-....++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3468899999999999988887642 133444455456888887631 1 11111 1001122346899
Q ss_pred ceeeeccccccCCC---CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceE
Q 006662 541 DLIHADSIFSLYKD---RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 541 Dl~H~~~~fs~~~~---~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~ 599 (636)
|+|-+|--. .... +=--++++-++-|.|+|||.+++.. ..+....+.+.+++....+.
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 999886211 1111 0001357788999999999999952 34455566666666544443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.017 Score=63.77 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=73.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----ccc----chhh-ccccccCCC---CCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTY---PRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli----~~~~-~~ce~~~~y---p~t~Dl~H 544 (636)
.++|||++||+|+|+-+++..+- -.|+.+|.++..+..+.+- |+- -+++ |.-+.+..+ .++||+|=
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999866544432 2445556666677655431 331 1111 222222222 25899988
Q ss_pred ecccc-ccC-----CCCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCceEEe
Q 006662 545 ADSIF-SLY-----KDRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 545 ~~~~f-s~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
+|-=+ +.. .......+++.-.-++|+|||.++... ..+..+.+.+.+..-..++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 86432 111 111345677777889999999999842 2345666666677666666655
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.028 Score=59.65 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=42.3
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er 262 (636)
+.+.+.+.+...++. .+||.+||.|.++..+++.. ..++++ |.++.+++.|+++
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vigi---D~D~~al~~ak~~ 63 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAI---DRDPDAIAAAKDR 63 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEE---cCCHHHHHHHHHh
Confidence 344555666555554 89999999999999999873 567777 9999999999765
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.099 Score=57.00 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=70.2
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc----CCC-eEEEEeccccCC-
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVP-ALIGVMASIRLP- 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er----g~~-~~~~~~d~~~Lp- 277 (636)
...++...+|. +|||+.++.|.=+.++++. +..++.+ |.++..++...++ |.. +.....|...++
T Consensus 148 ~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~---D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~ 222 (355)
T COG0144 148 PALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAV---DVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE 222 (355)
T ss_pred HHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEE---cCCHHHHHHHHHHHHHcCCCceEEEecccccccc
Confidence 44455555665 9999999999777777765 3444555 7787766655433 443 456666665554
Q ss_pred -CCC-CCeeEEEe----c--cccc-----ccccC----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -YPS-RAFDMAHC----S--RCLI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -f~~-~sFDlV~~----s--~~L~-----h~~~d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+. +.||.|+. + .++. -|... +..+|....++|||||.|+.++-
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 222 35999994 2 2220 01111 12688899999999999999975
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.015 Score=59.38 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=69.0
Q ss_pred eEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcc------cchhhccccccCCCC---Cccceeee
Q 006662 479 NLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL------IGTYQNWCEAMSTYP---RTYDLIHA 545 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl------i~~~~~~ce~~~~yp---~t~Dl~H~ 545 (636)
.+|.+|||.|.--.=|++. ++-++ .-|-+++-+.+.-++-- -..++|.++.=..+| .+.|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666543 23333 33444456666555443 346677775434443 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-+||.-.. -.+...+-.+.|+|+|||.+++||
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 888886553 257789999999999999999997
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.072 Score=59.52 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~ 275 (636)
++.+++...+.++..+++ ++||+=||.|.|+..|+++...++++ ++++++++.|++ ++. ++.|..++.++
T Consensus 278 ~ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gv---Ei~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGV---EISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEE---ecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 344555566666555555 89999999999999999886666666 667777766653 343 47888888776
Q ss_pred CCCC---CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~---~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.... ...||+|+.---- ..-...+++.+.+ ++|-..+++|-.
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred HhhhccccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCC
Confidence 6532 3578999874322 1111355555554 578888999854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.016 Score=60.86 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=66.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC--CccceeeeccccccCC-
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFSLYK- 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp--~t~Dl~H~~~~fs~~~- 553 (636)
..+|||+|||.|.++..+.++.- ..+|+.+|.++.++..+.++ +.. ..-.+..+..++ ++||+|=++-=|-...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 34799999999999888866410 13567777777888888765 211 111233444443 7899988876665311
Q ss_pred ----C-----------Cc-CHHHHHHHHhhcccCCcEEEEE
Q 006662 554 ----D-----------RC-EMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 554 ----~-----------~c-~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. .+ .+...+...-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 11 1468889999999999988774
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.06 Score=56.96 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=66.1
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEecccc-CC-C-CCCCeeEEEe
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIR-LP-Y-PSRAFDMAHC 288 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~-Lp-f-~~~sFDlV~~ 288 (636)
++|||+=|=||.|+.+.+..|. .++.+ |.|..+++.++++ +. ...+...|+.. +. . ..+.||+|++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~V---D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSV---DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEE---ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4999999999999999888875 56777 9999999988765 32 35677777543 11 1 2468999997
Q ss_pred ccc---cc--ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRC---LI--PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~---L~--h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
--- -. ....+-..++..+.++|+|||++++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 211 00 1111225688889999999999988754
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.078 Score=59.39 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=80.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC--C-CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST--Y-PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~--y-p~t~Dl~H~~ 546 (636)
...|||+|||+|.|+.+|++.. ..|+.+|.++.++..+.+. |+ +-.++ |+-+.+.. + +.+||+|-++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4689999999999999998874 4677788888888877653 33 22222 33232322 3 2679987652
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceE---EeccCCCCCCcceEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 618 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 618 (636)
- .|..+..++-.+-+ |.|++.++++=+. ..-..+..+.+ -.|++. .+|.-.....=|-|.+..|
T Consensus 375 P------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 375 P------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred c------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 1 33334566655555 6999999999444 34455555543 236654 4455444444465555543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.22 Score=50.53 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=59.2
Q ss_pred CcEEEEeCCCCcHHHHHHh--hcCCEEEEcCcCCchHHHHHHHH-HcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLM--SRNILAVSFAPRDTHEAQVQFAL-ERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La--~~~v~vv~i~p~Dis~a~l~~A~-erg~~-~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
..+++|||.|.|.=+.-|+ .....++=+++.-=.-+.++.+. +-+.+ +.+....++...-...-||+|+| +++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-RAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-RAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-ehc--
Confidence 3599999999997777665 22333333422222223333333 33554 77777777666532111999988 444
Q ss_pred cccChHHHHHHHHhcccCCcEEEEE
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.....++.-+..+||+||.+++-
T Consensus 145 --a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 --ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred --cchHHHHHHHHHhcccCCcchhh
Confidence 24457788889999999987654
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.014 Score=62.86 Aligned_cols=128 Identities=20% Similarity=0.341 Sum_probs=71.6
Q ss_pred HHHHHHHHH--HHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----------
Q 006662 454 TALWKKRVT--YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG---------- 521 (636)
Q Consensus 454 ~~~w~~~v~--~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg---------- 521 (636)
-.-|.+.+- .|.+. +........||||+||=||=---....+| -.++.+|.+..-+.-+.+|=
T Consensus 41 fNNwvKs~LI~~~~~~---~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~ 115 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKK---VKQNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSK 115 (331)
T ss_dssp HHHHHHHHHHHHHCHC---CCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred HhHHHHHHHHHHHHHh---hhccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence 344777753 44332 22224689999999999984444444444 44556666666777777765
Q ss_pred -----ccchhhccccccCC-----CC---Cccceeeecccccc---CCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHH
Q 006662 522 -----LIGTYQNWCEAMST-----YP---RTYDLIHADSIFSL---YKDRCEMEDVLLEMDRILRPEGSVIIR--DDVDI 583 (636)
Q Consensus 522 -----li~~~~~~ce~~~~-----yp---~t~Dl~H~~~~fs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~ 583 (636)
+....+ .+..|.. ++ +.||+|=| -|++ ..+.-....+|.-+-.-|||||+||.+ |...+
T Consensus 116 ~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 116 QYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccccchhhee-ccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 111111 1122221 32 59999776 4442 233334568999999999999999998 44444
Q ss_pred HHHHHH
Q 006662 584 LVKIKS 589 (636)
Q Consensus 584 ~~~~~~ 589 (636)
+.++++
T Consensus 193 ~~~l~~ 198 (331)
T PF03291_consen 193 VKRLRE 198 (331)
T ss_dssp HCCHHC
T ss_pred HHHHHh
Confidence 455554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.1 Score=51.76 Aligned_cols=140 Identities=19% Similarity=0.270 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchh--hhhhhcCCCeEEEEecCCCCCccchH-HHHhhcc--cch
Q 006662 451 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTLG-VIYERGL--IGT 525 (636)
Q Consensus 451 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l~-~~~eRgl--i~~ 525 (636)
.+..+.|.+++-.=..+++.+.. ... +++|+|+|-|= .--++.....=+.=|=+..-..+.|. ++.+=|| +-+
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~-~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPD-FGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-C-CCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhcc-CCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 34567888887654444554554 222 69999999662 22233333221122222222223333 4445566 335
Q ss_pred hhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCceEE
Q 006662 526 YQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 526 ~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
+|.-.|. ..++..||+|=| .+-..+..++--+-+.|+|||.+++- +..+.+...++..+.+.++...
T Consensus 103 ~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 5544455 457899999987 34467888888889999999999985 4455677777777777777653
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.046 Score=60.89 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc--cchhh-ccccccCCCC---Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYP---RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~-~~ce~~~~yp---~t~Dl~H~~ 546 (636)
..+|||++||+|.|+..|++.. -.|+.+|.++.++..+.+ .|+ +-+++ |..+.+..++ .+||+|-.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999999998752 245666776677766654 233 22233 3333233332 468887642
Q ss_pred cccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
- .|-. .+.++-++.+ |+|++.++++-+...+.+-.+.+..-.|++.
T Consensus 370 P------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 P------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred c------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 1 1222 3455555555 8999999999666666444444444456554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.095 Score=52.17 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=61.9
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchH-------HHHHHHHHcC-CCeEEEEeccccCC-
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHE-------AQVQFALERG-VPALIGVMASIRLP- 277 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~-------a~l~~A~erg-~~~~~~~~d~~~Lp- 277 (636)
+..++++. +|+|+=-|.|.|++-++.. | .+..+.|.+... .+-..+++.. .+....-.....++
T Consensus 43 FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 43 FAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred EeccCCCC--EEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 34566777 9999999999999998875 4 456776655421 1111121111 01111111111111
Q ss_pred ------CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ------YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ------f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+..++|.++.+..+ | ......+..++++.|||||.+++..+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCcccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 223455555554444 3 33447899999999999999999864
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.039 Score=58.95 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=59.7
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh------cc----cchhhccccc---cCCCC-Cc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER------GL----IGTYQNWCEA---MSTYP-RT 539 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~~~ce~---~~~yp-~t 539 (636)
...++|||+|||.|+.+.++++++ +.-+-++..|. ..+.++.+. |+ +-+++ ..+ ....| +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~--~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHI--GDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEE--ChHHHHHhhccCCC
Confidence 347899999999999999998874 53333444443 355555442 11 11111 111 12343 78
Q ss_pred cceeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEE
Q 006662 540 YDLIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
||+|-++.-....... ---+.++-.+-|.|+|||.++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9998875322111100 01246788999999999999873
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.035 Score=57.03 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=60.2
Q ss_pred ceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC--CCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||+|.++.+++++ +. .+|..+|..+..+..+.+. +.. .+-.+..+..+ +.+||+|=+|==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~n-~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKRI-VPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHhh-ccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 48999999999999987653 22 3566667665677766643 322 22223444444 368999887655542
Q ss_pred C-----CCC---cCHH-HHHHHHhhcccCCcEEEE
Q 006662 552 Y-----KDR---CEME-DVLLEMDRILRPEGSVII 577 (636)
Q Consensus 552 ~-----~~~---c~~~-~~l~e~dRiLrPgG~~i~ 577 (636)
. ..+ ..+. .++-..-|+||||+. |+
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 222 2334 477777888888887 55
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.079 Score=52.79 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=57.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC---EEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v---~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
+++|||+|.|+|-.+..-++.|. ...++ .+...+. +..+++.+.+...|.. ..+..||+++.+.+
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~-----~P~~~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagDl 151 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADI-----DPWLEQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGDL 151 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCC-----ChHHHHHhhcchhhccceeEEeecccc---CCCcceeEEEeece
Confidence 45999999999987777776643 33344 3333333 3345655555544432 26678999999887
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.... ...+++. ..+.|+-.|.-++.+.
T Consensus 152 fy~~~-~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 152 FYNHT-EADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred ecCch-HHHHHHH-HHHHHHhCCCEEEEeC
Confidence 73322 3356666 6666666666666543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.055 Score=54.80 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH-----hhcccchhhccc-cccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-----ERGLIGTYQNWC-EAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-----eRgli~~~~~~c-e~~~~yp~t~Dl~H~~~~ 548 (636)
.....+||.|||.|=....|+-.-.=.+-+|... +..+..+. +.+-++.+..-. |.|.+=+..||+|=+-=+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 4688999999999999987765533222333322 35777777 333444433111 444444479999776222
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCCceEEecc
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------------ILVKIKSITDGMEWEGRIADH 603 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~~ 603 (636)
.... ..-++...|.-.-.-|+|+|.+|+.|++. ....+++|.+.=..++...+.
T Consensus 132 lghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 132 LGHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred hccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 2222 23356678888889999999999975431 235566666666655554433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.12 Score=52.27 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHcCC----CeEEEEeccc-c
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALERGV----PALIGVMASI-R 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~erg~----~~~~~~~d~~-~ 275 (636)
..+.+.+++.+. .+| ++||.||-|-|.....+.++... -.=+ +.++...+..++.+. ++.+..+--+ .
T Consensus 88 tpiMha~A~ai~-tkg--grvLnVGFGMgIidT~iQe~~p~~H~Ii---E~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 88 TPIMHALAEAIS-TKG--GRVLNVGFGMGIIDTFIQEAPPDEHWII---EAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred hHHHHHHHHHHh-hCC--ceEEEeccchHHHHHHHhhcCCcceEEE---ecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 445566666654 233 38999999999988888777431 1113 557777777766553 3444333222 2
Q ss_pred CC-CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 276 LP-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 276 Lp-f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++ ++++.||-|+--- +...-++...+.+.+.|+|||+|.|-+-
T Consensus 162 l~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 23 6788999998633 3233346677888999999999998765
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.076 Score=58.28 Aligned_cols=93 Identities=9% Similarity=0.063 Sum_probs=67.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CC-EEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NI-LAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v-~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f~~~sFDlV~~s~ 290 (636)
.+|||+.||+|..+..++.+ ++ .++.. |+++.+++.++++ +. ++.+...|...+- ...+.||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~n---D~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFAN---DINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 48999999999999999987 43 33444 8888888877644 22 2556666654432 1235799998733
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ..+..++..+.+.+++||++.++.
T Consensus 123 -f----Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -F----GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -C----CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 244689999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.051 Score=53.53 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHH----HHhhccc---chhh-ccccccCCCCCccceeeeccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV----IYERGLI---GTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~eRgli---~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
+|||.|||-|.+=..|++.+.-- -++.+|-++..+.. +-.+|+- .... |.-.. ...+.-||+||=-|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 99999999999999999876311 15566655444432 3334552 1111 22222 22356788888666554
Q ss_pred c---C--CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhc
Q 006662 551 L---Y--KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDG 593 (636)
Q Consensus 551 ~---~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~ 593 (636)
. . .....+..++--++++|+|||.|+|+.=.-..+++.+....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 2 1 11222346777899999999999999755444444444333
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.035 Score=55.55 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHHHH-HhhhccCCCCCcceEeeecccch----hhhhhhcC----CCeEEEEecCCCCCccchHHHHhh
Q 006662 450 FREDTALWKKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLG----GFAAALVD----DPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~-~~~~~l~~~~~~r~vlD~~~g~g----gfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
|--|...|..-.+... .++..... ++.=+|..+||++| +.|-.|.+ ..-|-+.+..+|-+...|+.| .+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~-~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~ 82 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARP-GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RA 82 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHhhccccCC-CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-Hh
Confidence 5556667766554333 22222233 46788999999999 45555555 123568899999987777665 45
Q ss_pred cccc------------------------------------hhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHH
Q 006662 521 GLIG------------------------------------TYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLE 564 (636)
Q Consensus 521 gli~------------------------------------~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e 564 (636)
|+++ ..|+.++ ..+.+.-||+|=|-+|+-... .-....++--
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 5533 2233333 223348899999999987553 3345789999
Q ss_pred HhhcccCCcEEEEEeCH
Q 006662 565 MDRILRPEGSVIIRDDV 581 (636)
Q Consensus 565 ~dRiLrPgG~~i~~d~~ 581 (636)
+-+.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999997543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.11 Score=55.39 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=77.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCC----CCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST----YPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~----yp~t~Dl~H~~~~ 548 (636)
...|||+|||.|.|+..|+++. ..|+.+|.++.++..+.+. |+ .-.+-.+..... .+..||+|-++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3689999999999999999864 3678888887788776543 44 211112222211 22579988875
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCceE---EeccCCCCCCcceEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI-LVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 618 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 618 (636)
..|-.+...++++=.-++|++.++++-+... .+.++.+ . .|++. .+|.-.....=|-|.+.+|
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 2343344444454455789999999855543 3344444 2 46654 4454444444466666554
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.1 Score=56.71 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
..+++.+.++++..++ .|||+=||+|.|+..|++..-.++++ ++++.+++.|+++ ++ ++.+..++..+
T Consensus 183 ~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gv---E~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGV---EIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEE---ES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEe---eCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 4445555555543322 79999999999999999987777777 7788888877643 43 57777665443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.024 Score=57.22 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=47.0
Q ss_pred CcceEeeecccchhhhhhhcCC--Ce-EEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PL-WVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v-~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H 544 (636)
..-+|||+|||+|=++|.|... ++ -|..| +..+.....+.++ |+ +.+.+ ......+| ..||.||
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~v---E~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSV---ERDPELAERARRNLARLGIDNVEVVV--GDGSEGWPEEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEE---ESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGTTGGG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEE---CccHHHHHHHHHHHHHhccCceeEEE--cchhhccccCCCcCEEE
Confidence 3679999999999888777642 22 22322 3332333333222 33 22222 12344555 5699999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+.+ ..+.+--++-+-|||||.+|+-
T Consensus 147 v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 147 VTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred Eee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 832 2233334444559999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.082 Score=57.74 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=68.9
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhcc
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNW 529 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ 529 (636)
|.+.-..|.+ .++|.-+...+.+ +. -++|++||+|+...+...-.. -++...+....++...-+--.-..+++-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~-~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFP-GS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcc-cc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4444455654 3345544434555 33 788999999999888765422 3445555543333333322222222222
Q ss_pred cc------ccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 530 CE------AMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 530 ce------~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|. ...+++ .+||.+-+.- ...+.-+...++.|+-|+|+|||++|.-
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~ld---~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFLE---VVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEEe---ecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 21 123455 8999755411 1123355679999999999999999985
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.17 Score=54.38 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=32.1
Q ss_pred cCCCC-CCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYP-SRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~-~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++ ...|++|+...-|.|..... ...++.+..+++|||.|+|..+
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 45554 34677777655554433211 3488999999999999999976
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.15 Score=48.00 Aligned_cols=93 Identities=20% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCcEEEEeCCCCcHHHHHHhh-----c-CCEEEEcCcCCchHHHHHHHHHc----C----CCeEEEEeccccCCCCCCCe
Q 006662 218 SIRTAIDTGCGVASWGAYLMS-----R-NILAVSFAPRDTHEAQVQFALER----G----VPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~-----~-~v~vv~i~p~Dis~a~l~~A~er----g----~~~~~~~~d~~~Lpf~~~sF 283 (636)
....|+|+|||-|.++..|+. . +..++++ |.++..++.+.++ + ....+...+..... .....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGI---DCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEE---ECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 345899999999999999998 3 6666677 6666666655433 2 11222222221111 13455
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++++. | |-..+. ..+|+...+ |+-.+++..|
T Consensus 101 ~~~vg---L-HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 101 DILVG---L-HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred eEEEE---e-ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 66654 3 333344 455555544 6666655544
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.058 Score=52.05 Aligned_cols=95 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhhccccccCCC--C-Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY--P-RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~~~ce~~~~y--p-~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++..|+++. -.|+.+|.++.+++.+.++-- +.+++ ..+..+ + ..||.|=++-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECC
Confidence 345689999999999999999873 356666776677777766521 22333 333333 3 3578765533
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
-|.. ..-.+..+ ++.. -+.++|.+++..
T Consensus 86 Py~~--~~~~i~~~-l~~~-~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNI--STPILFKL-LEEP-PAFRDAVLMVQK 113 (169)
T ss_pred Cccc--HHHHHHHH-HhcC-CCcceEEEEEEH
Confidence 3321 11222233 3322 256899998874
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.4 Score=48.83 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=63.1
Q ss_pred ccCCCCCcEEEEeCCCCcHHHHHHhhc----C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC----CCCCe
Q 006662 213 NLKDGSIRTAIDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY----PSRAF 283 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~----~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf----~~~sF 283 (636)
++.+|. +||-+|..+|....++++- | +.++.+++. .-...+..|.+|. ++.-...|+ +.|. --+.+
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R~-NIiPIl~DA-r~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKRP-NIIPILEDA-RHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHST-TEEEEES-T-TSGGGGTTTS--E
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccCC-ceeeeeccC-CChHHhhcccccc
Confidence 455666 9999999999888888764 2 455666552 2336667777664 444344444 3341 12479
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++--+- ++. +.++.++...||+||.++++.
T Consensus 145 DvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVAQ----PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999984321 244 678889999999999999985
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.35 Score=51.02 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=67.7
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccC-C-
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRL-P- 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~L-p- 277 (636)
....+...++. +|||+.++.|.=+..+++. ...++.. |++...++...+ -|. .+.....|.... +
T Consensus 77 ~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~---D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 77 VALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVAN---DISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEE---ESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred ccccccccccc--cccccccCCCCceeeeeecccchhHHHHh---ccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 34444444555 8999999999888888776 2344444 777776665443 244 344444555444 1
Q ss_pred CCCCCeeEEEe----cccccccccCh------------------HHHHHHHHhcc----cCCcEEEEEeC
Q 006662 278 YPSRAFDMAHC----SRCLIPWGQYD------------------GLYLIEVDRVL----RPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~----s~~L~h~~~d~------------------~~~L~el~RvL----KPGG~Liis~p 321 (636)
.....||.|+. +..- .+..++ ..+|..+.+.| ||||+++.++-
T Consensus 152 ~~~~~fd~VlvDaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHTTTEEEEEEECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ccccccchhhcCCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 23346999994 3221 111111 25788999999 99999999974
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.061 Score=54.92 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCe-EEEEecCCCCCccchHHH----Hhhcc----c
Q 006662 453 DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVI----YERGL----I 523 (636)
Q Consensus 453 d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~----~eRgl----i 523 (636)
.++-|...... ...+.. .+.-+|||.-.|+|=+|..-++++- .|.. +.+|. |-|+.+ +.|+| |
T Consensus 116 ~tdP~~Dt~~K----v~~V~~-~~G~rVLDtC~GLGYtAi~a~~rGA~~Vit-vEkdp--~VLeLa~lNPwSr~l~~~~i 187 (287)
T COG2521 116 GTDPLEDTLAK----VELVKV-KRGERVLDTCTGLGYTAIEALERGAIHVIT-VEKDP--NVLELAKLNPWSRELFEIAI 187 (287)
T ss_pred CcCcHHHHHhh----hheecc-ccCCEeeeeccCccHHHHHHHHcCCcEEEE-EeeCC--CeEEeeccCCCCcccccccc
Confidence 34456655432 112444 6688999999999999988887765 2222 22222 233332 33444 3
Q ss_pred chhh-ccccccCCCC-Cccce-eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------eCHHHHHHHHHHHh
Q 006662 524 GTYQ-NWCEAMSTYP-RTYDL-IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------DDVDILVKIKSITD 592 (636)
Q Consensus 524 ~~~~-~~ce~~~~yp-~t~Dl-~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------d~~~~~~~~~~~~~ 592 (636)
-+++ |--|...+|+ .+||. ||=--=||.-. .=--+.+-.|+.|||||||.+.=- --.+....|.+.+.
T Consensus 188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred EEecccHHHHHhcCCccccceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 3444 4447778898 78994 78655566433 111157889999999999998753 12346667777777
Q ss_pred cCCCceEEec
Q 006662 593 GMEWEGRIAD 602 (636)
Q Consensus 593 ~~~W~~~~~~ 602 (636)
+.-..+.-..
T Consensus 267 ~vGF~~v~~~ 276 (287)
T COG2521 267 RVGFEVVKKV 276 (287)
T ss_pred hcCceeeeee
Confidence 7777654443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.21 Score=54.94 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCCCCCeeEEEecccccccccCh-H-------------------------------------HHHHHHHhcccCCcEEEE
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYD-G-------------------------------------LYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~-~-------------------------------------~~L~el~RvLKPGG~Lii 318 (636)
-||.++.++++++.++ ||.... + .+|+.=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 3889999999999999 886431 1 133334566899999999
Q ss_pred EeCCC
Q 006662 319 SGPPV 323 (636)
Q Consensus 319 s~p~~ 323 (636)
+....
T Consensus 236 ~~~Gr 240 (386)
T PLN02668 236 VCLGR 240 (386)
T ss_pred EEecC
Confidence 96533
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.42 Score=51.70 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=68.4
Q ss_pred ccCCCCCcEEEEeCCC-CcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 213 NLKDGSIRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCG-tG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
...+|+ +|+=+|+| .|..+..+++ .+..++.+ |.+++..+.|++-|....+...+.....--.+.||+|+..-
T Consensus 163 ~~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 163 NVKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 345565 88888877 5588888888 48877777 88999999999887654443222222221122499998743
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
. ...+....+.||+||.+++.+-+
T Consensus 238 ~--------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G--------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C--------hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 35678889999999999999753
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.23 Score=48.32 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC--CCCCC-eeEEEecc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP--YPSRA-FDMAHCSR 290 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp--f~~~s-FDlV~~s~ 290 (636)
.|||+.||.|..+..+|+....++++ |+++..++.|+.+ |+ .+.+..+|...+. +..+. ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viai---did~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAI---DIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEE---ES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 79999999999999999997777777 8888888888754 33 4778877765432 12122 78888754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.05 Score=54.79 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=53.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cch--hhcc-ccccCCCC--Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGT--YQNW-CEAMSTYP--RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~--~~~~-ce~~~~yp--~t~Dl~H~~~ 547 (636)
.....||++|||.|=-+|-|++. +-.|+-++.- .+|.-...+-| .|. ++.- .....-|| .-||.|+..+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERI-EELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH---hCeEEEEEEc-HHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 44689999999999555555443 1234444443 44444444433 121 3322 24555577 6799998732
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
-+ -.++.-|+| -|+|||.+|+=
T Consensus 147 aa------~~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 147 AA------PEVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred cc------CCCCHHHHH---hcccCCEEEEE
Confidence 22 234555554 69999999984
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.096 Score=51.11 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=52.8
Q ss_pred CCcceEeeecccch--hhhhhhcCCCeEEEEecCCCCCc--cchHHHHhhcc------c-chhhcccccc--CCC-CCcc
Q 006662 475 GRYRNLLDMNAYLG--GFAAALVDDPLWVMNTVPVEAKI--NTLGVIYERGL------I-GTYQNWCEAM--STY-PRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~g--gfaa~l~~~~v~~mnv~~~~~~~--~~l~~~~eRgl------i-~~~~~~ce~~--~~y-p~t~ 540 (636)
.+.++||++|||.| |.+++... + ...|+-+|.++ ..+....++.. + -...+|.+.. ... ++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~--~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-G--AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc-C--CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45789999999998 55555441 1 12233334432 23334444322 1 1334898744 112 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|-+.-++=. .-..+.++-=+.++|.|+|.+++..
T Consensus 121 D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99998444322 1234688888999999999988863
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.47 Score=51.36 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc------------C------CE--EEEcCcCCchHHHHHHHHH-----cCCCeEEE
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR------------N------IL--AVSFAPRDTHEAQVQFALE-----RGVPALIG 269 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~------------~------v~--vv~i~p~Dis~a~l~~A~e-----rg~~~~~~ 269 (636)
.....-+|+|+||..|..+..+... + +. .-|+-..|.+.-....... ...++...
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3445568999999999877766542 1 12 2355555655433222211 12232222
Q ss_pred -E-eccccCCCCCCCeeEEEeccccccccc
Q 006662 270 -V-MASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 270 -~-~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
+ +....--||+++.|+++++.++ ||..
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred ecCchhhhccCCCCceEEEEEechh-hhcc
Confidence 2 2233333899999999999999 7753
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.37 Score=50.84 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=73.3
Q ss_pred CcceEeeecccchhhhhhhcC----CC-eEEEEecCCCCCccchHH----HHhhcc---cchhh-ccccccCCC-----C
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGV----IYERGL---IGTYQ-NWCEAMSTY-----P 537 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~----~~eRgl---i~~~~-~~ce~~~~y-----p 537 (636)
+.++||++|+++|..+.+|+. .+ |+++ |..+....+ +-+-|+ |-+.+ +-.+.+..+ +
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~Ti-----E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVAC-----ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEE-----ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 478999999999999988865 22 3333 332223333 234455 11111 212222222 3
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------C---HHHHHHHHH----HHhcCCCceEEe
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------D---VDILVKIKS----ITDGMEWEGRIA 601 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~---~~~~~~~~~----~~~~~~W~~~~~ 601 (636)
.+||+|=.++ +.-....++-..-+.|||||.+|+-+ . ......|++ +...=+++..+.
T Consensus 193 ~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll 266 (278)
T PLN02476 193 SSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV 266 (278)
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 5899987643 22345677888889999999998841 1 011123333 455556777765
Q ss_pred ccCCCCCCcceEEEEEec
Q 006662 602 DHENGPRQREKILFANKK 619 (636)
Q Consensus 602 ~~e~~~~~~~~~l~~~K~ 619 (636)
-. .+.+++++|+
T Consensus 267 Pi------gDGl~i~~K~ 278 (278)
T PLN02476 267 PI------GDGMTICRKR 278 (278)
T ss_pred Ee------CCeeEEEEEC
Confidence 32 3678888874
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.1 Score=49.00 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=74.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEE--------------------------------------EcCc
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAV--------------------------------------SFAP 248 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv--------------------------------------~i~p 248 (636)
.|..+....++ ..++|-=||+|.+..+.+-.+.... -+.+
T Consensus 182 Ail~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 182 AILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444334444 3899999999999988776542000 0224
Q ss_pred CCchHHHHHHHHHc----CCC--eEEEEeccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHhcccCCcE
Q 006662 249 RDTHEAQVQFALER----GVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGY 315 (636)
Q Consensus 249 ~Dis~a~l~~A~er----g~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~ 315 (636)
.|++..+++.|+.+ |+. +.|.++|...++-+-+.+|+|+|+.-.-.-..+. ..+.+.+.+.++--+.
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence 48888888888654 544 7889999888875547899999986331111111 2345566678888888
Q ss_pred EEEEeC
Q 006662 316 WILSGP 321 (636)
Q Consensus 316 Liis~p 321 (636)
++++++
T Consensus 340 ~v~tt~ 345 (381)
T COG0116 340 YVFTTS 345 (381)
T ss_pred EEEEcc
Confidence 888865
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.12 Score=51.78 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=53.2
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc--cchhh-ccccccCCCCCccceeeeccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+|||++||+|.++..++.+.. -.|+.++..+..+..+.+ -|+ +-+++ |+.+.+......||+|=++-=|-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 4799999999999975444432 244444555445444432 122 22222 33222221224699887755442
Q ss_pred cCCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006662 551 LYKDRCEMEDVLLEM--DRILRPEGSVIIRDDV 581 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 581 (636)
.. ..+.++--+ -.+|.|+|.+++.-..
T Consensus 133 ---~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 ---KG-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ---CC-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 123333333 3468999999998544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.22 Score=50.13 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=74.4
Q ss_pred CcceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHHHhhcc---cchhh-ccccccCCC-----CCccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYD 541 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~~~~y-----p~t~D 541 (636)
+.++||.+|+++|=-+.+|++ . .|+++-.-|.... -..+.+..-|+ |-+.+ |..+.+.+. +.+||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 478999999999977777763 2 3455444332221 22223344465 23332 333433333 35899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------------H---HHHHHHHHHHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------------V---DILVKIKSITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------------~---~~~~~~~~~~~~~~W~~~~~~~e~ 605 (636)
+|=.++ +.-....++-.+-+.|||||.+|+-+- . .+.+-.+.+.+.=+.+..+...
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi-- 195 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI-- 195 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS--
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe--
Confidence 987754 223344666667799999999998521 1 1223333445556777776543
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
.+.|++++|+
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 4688999884
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.92 Score=47.54 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCC--cHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH---cCCC--eEEEEeccccCC--CC----CC
Q 006662 218 SIRTAIDTGCGV--ASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE---RGVP--ALIGVMASIRLP--YP----SR 281 (636)
Q Consensus 218 ~~r~VLDIGCGt--G~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e---rg~~--~~~~~~d~~~Lp--f~----~~ 281 (636)
.++..||||||. ....-.++++ ...++-+ |..+..+..++. .... ..+..+|..+.. +. .+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYV---D~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYV---DNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEE---ESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEE---CCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 456899999993 3456666654 4445444 556555554432 2334 667777754321 00 11
Q ss_pred Cee-----EEEeccccccccc--ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFD-----MAHCSRCLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFD-----lV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~Liis~p 321 (636)
-+| .++...+|++..+ ++..++..+...|.||.+|+++..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 222 3455566745543 448999999999999999999964
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.34 Score=49.25 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH-hhccc------ch--------hhccccccCCCC--
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-ERGLI------GT--------YQNWCEAMSTYP-- 537 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-eRgli------~~--------~~~~ce~~~~yp-- 537 (636)
..-..||+-|||.|--+.+|++++. +|+.+|.++.-++-++ ++++- +. +.-+|..|-.++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3456799999999999999999985 7788888766666664 45541 11 122455555553
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE-E-e--------CH--HHHHHHHHHHhcCCCceEEec
Q 006662 538 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII-R-D--------DV--DILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 538 --~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~-d--------~~--~~~~~~~~~~~~~~W~~~~~~ 602 (636)
..||+|.=-+.|-... .-..+.+..-|.++|+|||.+++ + + +. =....|++++. -.|++....
T Consensus 113 ~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp CHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 3588876434443332 23456999999999999999433 3 1 00 03367777777 777876443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.25 Score=60.83 Aligned_cols=119 Identities=9% Similarity=0.056 Sum_probs=72.4
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh---h----------------cc---cchhh-cccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE---R----------------GL---IGTYQ-NWCEAM 533 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e---R----------------gl---i~~~~-~~ce~~ 533 (636)
..|||+|||.|-.+-+|++. +- -.|+.+|.++..+.++.+ + ++ +-+++ ||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 47999999999999999764 32 145666777677766622 1 11 23333 666544
Q ss_pred CCCCCccceeeecc--------------------------------ccccC--CCCcC-HHHHHHHHhhcccCCcEEEEE
Q 006662 534 STYPRTYDLIHADS--------------------------------IFSLY--KDRCE-MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 534 ~~yp~t~Dl~H~~~--------------------------------~fs~~--~~~c~-~~~~l~e~dRiLrPgG~~i~~ 578 (636)
......||+|-++= ||..+ .+.-+ +..|+-+.-++|+|||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21112588754421 11110 11111 247899999999999999997
Q ss_pred eCHHHHHHHH-HHHhcCCCce
Q 006662 579 DDVDILVKIK-SITDGMEWEG 598 (636)
Q Consensus 579 d~~~~~~~~~-~~~~~~~W~~ 598 (636)
-..+.-+.|. +++++..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6555556777 5776655544
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.38 Score=49.02 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred CcceEeeecccchhhhhhhcC----CC-eEEEEecCCCCCccchHHHHhhcc---cchhh--ccccccCC-CCCccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGVIYERGL---IGTYQ--NWCEAMST-YPRTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~--~~ce~~~~-yp~t~Dl~H 544 (636)
..++||.+|.+.|=-|..|+. .. +.+.-.-|.-.. ...+...+-|+ |-.+. |+-+.++- ...+||+|-
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-IARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 489999999999866666643 22 333222221111 22333344455 22333 77777774 679999976
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------------eCHHHHHHHHHHHhcCCCceEEeccCCCCCCc
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------------DDVDILVKIKSITDGMEWEGRIADHENGPRQR 610 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 610 (636)
.+. +.-.-+..|-+.=++|||||.+|+- +......+|++...-+.|+-+.. +.--| ..
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~lP-~g 209 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD-TVLLP-LG 209 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce-eEEEe-cC
Confidence 521 4445568888899999999999884 11234555666555555543221 11012 23
Q ss_pred ceEEEEEec
Q 006662 611 EKILFANKK 619 (636)
Q Consensus 611 ~~~l~~~K~ 619 (636)
+.++++.|.
T Consensus 210 DGl~v~~k~ 218 (219)
T COG4122 210 DGLLLSRKR 218 (219)
T ss_pred CceEEEeec
Confidence 789999885
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.29 Score=55.34 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=57.8
Q ss_pred CCcceEeeecccchhhhhhhcC----CCeEEEEecCCCCCcc---chHHHHhh-ccc--chhh-cccccc-CCCCCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKIN---TLGVIYER-GLI--GTYQ-NWCEAM-STYPRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~---~l~~~~eR-gli--~~~~-~~ce~~-~~yp~t~Dl 542 (636)
.....||||.|+-||=..+|++ .+.+ +..|.+.. .|.-.++| |+- -+.+ |-. .+ ..+|..||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~l----vA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAI----VANEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEE----EEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchhhcCe
Confidence 3356899999999997777654 3443 33343333 34444555 441 1111 111 12 245788999
Q ss_pred ee----eccccccCCCC-----c---CH-------HHHHHHHhhcccCCcEEEEE
Q 006662 543 IH----ADSIFSLYKDR-----C---EM-------EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 543 ~H----~~~~fs~~~~~-----c---~~-------~~~l~e~dRiLrPgG~~i~~ 578 (636)
|- |+|.=..-++- - ++ ..||...-+.|||||.+|.+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 88 55442222110 0 11 27889999999999999987
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.11 Score=47.12 Aligned_cols=45 Identities=29% Similarity=0.555 Sum_probs=29.7
Q ss_pred CeeEEEecccc--ccc--ccCh-HHHHHHHHhcccCCcEEEEEeCCCCcccc
Q 006662 282 AFDMAHCSRCL--IPW--GQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESH 328 (636)
Q Consensus 282 sFDlV~~s~~L--~h~--~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~ 328 (636)
.||+|+|..+. +|. .++. ..+++.+.+.|+|||.|++.- ..|+..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp--Q~w~sY 50 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP--QPWKSY 50 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----HHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC--CCcHHH
Confidence 48999996654 222 2222 579999999999999999983 345443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.2 Score=48.21 Aligned_cols=99 Identities=10% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-------------~~ce~~~~yp~t~ 540 (636)
...++||-+|+|.|+.+..+.+. ++--+-+|..|. ..++++.+. ++..+ |=-+-+..-++.|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~--~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKH--LTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHh--cccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 35789999999999999988775 453344444444 577766553 22111 0000111124689
Q ss_pred ceeeeccccccCC-CCcC--H-HHHHH-HHhhcccCCcEEEEE
Q 006662 541 DLIHADSIFSLYK-DRCE--M-EDVLL-EMDRILRPEGSVIIR 578 (636)
Q Consensus 541 Dl~H~~~~fs~~~-~~c~--~-~~~l~-e~dRiLrPgG~~i~~ 578 (636)
|+|=++ ++.-.. ..|. . ...+- .+.|.|+|||.+++.
T Consensus 178 DvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 998886 332111 1121 1 23444 688999999999874
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.37 Score=47.79 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=63.0
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
.+.|+|.|+|.++...++..-.++.+ +.++...+.|.++- .+..+..+|+....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAi---E~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAI---EKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEE---ecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 79999999998887777764444444 44556666676661 356777778777666 468999984321112
Q ss_pred ccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 296 GQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 296 ~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
..++ ..++..+...||-.+.++=.
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccH
Confidence 2222 56788888888988887643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.52 Score=49.83 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=84.2
Q ss_pred cCCCCCcceEeeecccchhhhh-hhcCCCeEEEEecCCCCC----ccchHHHHhhcccchhh-ccccccCC--CC---Cc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAA-ALVDDPLWVMNTVPVEAK----INTLGVIYERGLIGTYQ-NWCEAMST--YP---RT 539 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa-~l~~~~v~~mnv~~~~~~----~~~l~~~~eRgli~~~~-~~ce~~~~--yp---~t 539 (636)
|...++--.||||-||.|-.-- +|.+.+--+.+|.=.|-+ +.--..|.+|||-++.. .-..+|.. |- -.
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCC
Confidence 4333677889999999874311 112222111122222222 24557899999955422 11123332 42 45
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhc----CCCceEEe
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDG----MEWEGRIA 601 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~----~~W~~~~~ 601 (636)
++|+-.+|||.+..+.-.+..-|-=+-++|.|||++|.+-.. -.++.|...+++ --|-++..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 789999999999998877788899999999999999999754 366777777765 36877743
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.3 Score=46.70 Aligned_cols=98 Identities=9% Similarity=0.106 Sum_probs=55.9
Q ss_pred CcEEEEeCCCCcHHHHHH-hhc---CCEEEEcCcCCchHHHHHHHHHc-------CCCeEEEEeccccCCCCCCCeeEEE
Q 006662 219 IRTAIDTGCGVASWGAYL-MSR---NILAVSFAPRDTHEAQVQFALER-------GVPALIGVMASIRLPYPSRAFDMAH 287 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~L-a~~---~v~vv~i~p~Dis~a~l~~A~er-------g~~~~~~~~d~~~Lpf~~~sFDlV~ 287 (636)
+.+|+=||||.=-++..+ +++ +..+..+ |+++++++.+++- +..+.+..+|....+..-..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~i---D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNI---DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEE---ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEE
Confidence 459999999976555554 433 3344455 7788887777431 3457888888777665557899999
Q ss_pred eccccccccc-ChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..... .... +...++..+.+.++||..+++..
T Consensus 198 lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred Ehhhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 86544 3333 34899999999999999999984
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.35 Score=48.59 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHhhcC
Q 006662 221 TAIDTGCGVASWGAYLMSRN 240 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~ 240 (636)
.+.|||||.|.+...|+...
T Consensus 63 efaDIGCGyGGLlv~Lsp~f 82 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKF 82 (249)
T ss_pred eEEeeccCccchhhhccccC
Confidence 68999999999999999884
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.4 Score=45.76 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=68.7
Q ss_pred cceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHHHh----hcccc-hh---hccccccCCCCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYE----RGLIG-TY---QNWCEAMSTYPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~e----Rgli~-~~---~~~ce~~~~yp~t~Dl~ 543 (636)
...|||.|.|.|.+.++|+. . .|++.-. .+...++|.+ -||.- +- .|-++.. .+..||.|
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~-----r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDav 167 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI-----REDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDAV 167 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEe-----cHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCEE
Confidence 77999999999999999983 3 3444333 3344444432 25533 11 1444322 23478877
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCC
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEW 596 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W 596 (636)
-. +--+-..+|--++.+|+|||.+++- -..+++.++-+.++..+|
T Consensus 168 ~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 168 FL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred EE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 76 4444558999999999999999885 456666666666666665
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.35 Score=44.71 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHH
Q 006662 221 TAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFAL 260 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~ 260 (636)
++||||||.|.++..+++.+. .++.+ +.++.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~---E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAF---EPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEE---ecCHHHHHHHH
Confidence 489999999999999988743 46677 55666655544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.8 Score=49.00 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=37.3
Q ss_pred Cccceeeeccccc-cCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHHHHHHHHHHhcCCCce
Q 006662 538 RTYDLIHADSIFS-LYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 538 ~t~Dl~H~~~~fs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~~~~~~~~~~~~~W~~ 598 (636)
..||++-|--.|- .+..--...-.|.-+-+-|||||+||=+ |...++.+++.. ...+|--
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gN 257 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGN 257 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcc
Confidence 3499987633322 1112222346788899999999999998 444466777765 3335543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.37 Score=54.25 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
++.+...+.+.+.+..+. .+||+-||||.++..+++.-..++++ ++++..++.|+++ ++ ++.|.++.+
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGv---Ei~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGV---EISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeee---ecChhhcchhhhcchhcCccceeeeecch
Confidence 344455566666666665 89999999999999999985445555 6666666666543 43 467776633
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.091 Score=46.41 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=35.6
Q ss_pred EEeCCCCcHHHHHHhhc----C-CEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccC-C-CCCCCeeEEEeccccc
Q 006662 223 IDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL-P-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 223 LDIGCGtG~~a~~La~~----~-v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~L-p-f~~~sFDlV~~s~~L~ 293 (636)
||||+..|..+..+++. + ..++.+++....+...+..++.+ ..+.+..++..+. + ++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C-
Confidence 68999999888887764 2 13444522221112333333222 2467776665432 1 3357899998743 2
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
|-.+.....+..+.+.|+|||.+++.
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22223367788999999999999875
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.3 Score=48.06 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=63.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc--------C----CCeEEEEeccccC-CCCCCCee
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER--------G----VPALIGVMASIRL-PYPSRAFD 284 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er--------g----~~~~~~~~d~~~L-pf~~~sFD 284 (636)
.++||-+|.|.|--++++.+.- +. .|...|+++.+++++++. + +.+.+...|+... .-..+.||
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~--qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVE--QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcc--eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4689999999999999999873 21 233336677787777522 1 2244444443322 22356899
Q ss_pred EEEecccccccccCh-----HHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~-----~~~L~el~RvLKPGG~Liis~p 321 (636)
.|+.-. ..+-.+.. ..+..-+.|.|+++|.+++...
T Consensus 368 ~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 998632 11111111 3677888999999999999854
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.31 Score=49.90 Aligned_cols=97 Identities=5% Similarity=0.009 Sum_probs=62.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh-hccc--------------chhhccccccCCCC----
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE-RGLI--------------GTYQNWCEAMSTYP---- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e-Rgli--------------~~~~~~ce~~~~yp---- 537 (636)
...||+.|||-|-=+.+|++++. .|+.+|.++.-+...++ .|+- +.+.-+|..|-..+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46899999999999999999876 45666666555555444 2221 11223445454443
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 --~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
..||+|---+.|-... .-....+..-|-++|||||.+++
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 3578755444443332 12345899999999999998877
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.7 Score=45.53 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=61.4
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhc-c---c-----cccCCCCCccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQN-W---C-----EAMSTYPRTYD 541 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~-~---c-----e~~~~yp~t~D 541 (636)
+.. +..++||=+|.|-||-+.-+.+.+- +|+-++.-+..+.+..+ ..+..|. + - ........+||
T Consensus 68 ~~h-~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~--~lP~~~~~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 68 CTK-KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFIS--FFPHFHEVKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred hhC-CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHH--HCHHHHHhhcCCCEEEeehhhhccCCcCC
Confidence 344 6789999999999999999999873 44434433234443333 1121210 0 0 00111247899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+|=.+.+|+ +...-.+.|.|+|||.++..
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 999988776 45557789999999999996
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=89.04 E-value=2.8 Score=44.69 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhccCCCC---CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc-----CC--CeEE
Q 006662 201 ADAYIDDIGKLINLKDGS---IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GV--PALI 268 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~---~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er-----g~--~~~~ 268 (636)
.-.|+..|.++|...... ..++||||+|...+-..|..+ +...++. |+++..++.|+++ +. .+.+
T Consensus 82 R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaT---dID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVAT---DIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred hHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEe---cCCHHHHHHHHHHHHhccccccceEE
Confidence 445888888888643322 358999999987554444433 6655555 8888888887633 22 2444
Q ss_pred EEecccc-----CCCCCCCeeEEEecccc
Q 006662 269 GVMASIR-----LPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 269 ~~~d~~~-----Lpf~~~sFDlV~~s~~L 292 (636)
....... +-.+.+.||+.+|+--+
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred EEcCCccccchhhhcccceeeEEecCCcc
Confidence 3332211 11234689999999866
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.43 Score=51.49 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=56.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCC---ccchHHHHhhcc---cchhhccccccCCCC-Cccceeee--c
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAK---INTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHA--D 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~---~~~l~~~~eRgl---i~~~~~~ce~~~~yp-~t~Dl~H~--~ 546 (636)
+.++|||+|||+|-....=++.+ .-.|..++.+ .-..+++.+-|+ |.+++.--|.. --| .-.|+|-+ .
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 37899999999996543333332 1222333333 234556667776 44444333433 345 77787664 2
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
|-|-++.+ .+..+|.-=||.|.|||.++=
T Consensus 137 Gy~Ll~Es--MldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYES--MLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhh--hhhhhhhhhhhccCCCceEcc
Confidence 22222222 245788888999999998763
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=88.92 E-value=2.7 Score=46.12 Aligned_cols=125 Identities=11% Similarity=0.154 Sum_probs=70.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CCCccceeeecccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIHADSIF 549 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp~t~Dl~H~~~~f 549 (636)
++|||++||+|.|+..|+.+. ..|+.+|..+..+..+.+. |+ +-.+. |. +.+.. .-..||+|-+|=
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~DP-- 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVNP-- 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEECC--
Confidence 589999999999999998764 3566777766677666543 22 11111 11 11111 113488876642
Q ss_pred ccCCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCceE---EeccCCCCCCcceEEEE
Q 006662 550 SLYKDRCEM-EDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEGR---IADHENGPRQREKILFA 616 (636)
Q Consensus 550 s~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~ 616 (636)
.|-.+ +.++-.+. -|+|++.++++-+.. ..+-++.+ -.|++. .+|--.....=|-|.+.
T Consensus 309 ----Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~~DmFPqT~HvE~v~ll 372 (374)
T TIGR02085 309 ----PRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQLFDMFPHTSHYEVLTLL 372 (374)
T ss_pred ----CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEEeccCCCCCcEEEEEEE
Confidence 22222 33333333 479999999996655 44555555 247765 33433333333555443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.88 E-value=4 Score=44.54 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=64.1
Q ss_pred hccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-----C-CC-CCC
Q 006662 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----L-PY-PSR 281 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-----L-pf-~~~ 281 (636)
....++. +||.+|||. |..+..+++. +. .++.+ +.++...+.+++.+. ..+......+ + .+ ...
T Consensus 180 ~~~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~~---~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 180 AEVKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIAI---DRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred ccCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCC
Confidence 3344444 899999987 8888888876 54 35555 667788888877631 2222111110 0 11 234
Q ss_pred CeeEEEeccccc--------------ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLI--------------PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~--------------h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+|+|+..-.-. +-..+....+.++.+.|+|+|.+++.+.
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 699998642110 0112345688999999999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.6 Score=44.30 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh-------hccc
Q 006662 452 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE-------RGLI 523 (636)
Q Consensus 452 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e-------Rgli 523 (636)
-.|+.|.+.|..=.+ .... -+.-.++|+|||.|.-+-.|... += --|..+|-++..+..+-| .|-|
T Consensus 128 pETEE~V~~Vid~~~---~~~~-~~~~~ildlgtGSGaIslsll~~L~~--~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALN---NSEH-SKHTHILDLGTGSGAISLSLLHGLPQ--CTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ccHHHHHHHHHHHHh---hhhh-cccceEEEecCCccHHHHHHHhcCCC--ceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 357889888763222 1222 22338999999999888887653 21 122334444344444433 3447
Q ss_pred chhhc-cc-cccCCCC---Cccceeeecc--ccc-----------cCC--------CCcC--HHHHHHHHhhcccCCcEE
Q 006662 524 GTYQN-WC-EAMSTYP---RTYDLIHADS--IFS-----------LYK--------DRCE--MEDVLLEMDRILRPEGSV 575 (636)
Q Consensus 524 ~~~~~-~c-e~~~~yp---~t~Dl~H~~~--~fs-----------~~~--------~~c~--~~~~l~e~dRiLrPgG~~ 575 (636)
++.|. .- +.+.++| ..+|+|-+|- +++ .|. ..|. +-.++.=.-|.|+|||.+
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 77763 22 5777887 8888876642 222 111 1121 114566678999999999
Q ss_pred EEEeC-----HHHHHHHHH-HHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 576 IIRDD-----VDILVKIKS-ITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 576 i~~d~-----~~~~~~~~~-~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
++.-. ...+..+.. ..+.--|.+.++.. -.+.+++++-.+
T Consensus 282 ~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~D---f~~~~Rfv~i~r 327 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIWMISLKDDSNGKAAVVSD---FAGRPRFVIIHR 327 (328)
T ss_pred EEEecccccCcHHHHHHHHhchhhccchhheeec---ccCCcceEEEEe
Confidence 99632 223333333 34555566555421 124566665543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.64 E-value=8.2 Score=39.05 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=66.2
Q ss_pred hccCCCCCcEEEEeCCCCcHHHHHHhhc---C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC----CCCCe
Q 006662 212 INLKDGSIRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY----PSRAF 283 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~---~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf----~~~sF 283 (636)
+++.+++ +||=+|+-+|....++++- | +.++.+++... .+.+..|.+|. ++.-...|+ +.|. --+..
T Consensus 72 ~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccc
Confidence 3455666 9999999999887777764 4 56778877443 36667776664 222222333 3441 12458
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|+.--+ .+++ +.+..++...||+||+++++.
T Consensus 147 Dviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 99987322 1233 678889999999999888874
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.61 E-value=2.8 Score=39.85 Aligned_cols=96 Identities=25% Similarity=0.281 Sum_probs=56.7
Q ss_pred EEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC--CCCCCeeEEEecccccccccCh--------HHHHHHH
Q 006662 243 AVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQYD--------GLYLIEV 306 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp--f~~~sFDlV~~s~~L~h~~~d~--------~~~L~el 306 (636)
+.+| |+.+.+++.++++ +. .+.+...+-+.+. .+.+.+|+|+.+....+-.+.. -.+++.+
T Consensus 2 VyaF---DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 2 VYAF---DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEE---ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred EEEE---ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 3455 8899998887655 22 3666655545554 2335899999987664543211 2688999
Q ss_pred HhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHh
Q 006662 307 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 353 (636)
Q Consensus 307 ~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l 353 (636)
.++|+|||.+++...+. |. .=.++.+.+++.++.+
T Consensus 79 l~lL~~gG~i~iv~Y~G----H~--------gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG----HP--------GGKEESEAVEEFLASL 113 (140)
T ss_dssp HHHEEEEEEEEEEE--S----TC--------HHHHHHHHHHHHHHTS
T ss_pred HHhhccCCEEEEEEeCC----CC--------CCHHHHHHHHHHHHhC
Confidence 99999999999996521 11 1123455566666665
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.63 Score=46.88 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=82.5
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHH----HHhhcccc----hhhccccc-------cCCCCCccce
Q 006662 479 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGV----IYERGLIG----TYQNWCEA-------MSTYPRTYDL 542 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~eRgli~----~~~~~ce~-------~~~yp~t~Dl 542 (636)
.||.+|+|+|--|++++.. |- +.--|+|...+.+.- +.+.|+.- +.-|-++. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999988888764 32 234566766444433 34666622 11122222 2235689997
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE------------------------eC---HHHHHHHHHHHhcCC
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR------------------------DD---VDILVKIKSITDGME 595 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~------------------------d~---~~~~~~~~~~~~~~~ 595 (636)
|-|..++-.-. ....+-+|.+..|+|+|||.+++- |. .--++.|.+++..-.
T Consensus 106 i~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 66644432211 122368999999999999999994 11 114467788877766
Q ss_pred CceEEeccCCCCCCcceEEEEEe
Q 006662 596 WEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 596 W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.+..- .-+-| ...++||++|
T Consensus 185 L~l~~--~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEE--DIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccCc--ccccC-CCCeEEEEeC
Confidence 65432 11233 2478999987
|
The function of this family is unknown. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.45 E-value=3.9 Score=42.83 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=60.2
Q ss_pred cCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEE
Q 006662 214 LKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAH 287 (636)
Q Consensus 214 l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~----Lpf~~~sFDlV~ 287 (636)
...+. +||..|+| .|..+..+++. +..++.+ +.++...+.+++.+....+...+... .....+.+|+|+
T Consensus 163 ~~~~~--~vli~g~g~vG~~~~~la~~~G~~V~~~---~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGE--TVLVIGLGGLGLNAVQIAKAMGAAVIAV---DIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 34444 78888876 47777777775 7666656 55677777776666532221111000 012345799987
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..... ...+.++.+.|+++|.++..+.
T Consensus 238 d~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 238 DFVGT-------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ECCCC-------HHHHHHHHHHhhcCCEEEEECC
Confidence 53211 3578889999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.33 Score=50.84 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
...|||+|||+|.++.+|+++.- .|+.+|..+.+++.+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 56899999999999999998743 566677777888888775
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.94 E-value=5.7 Score=40.42 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=91.2
Q ss_pred cccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhh--hcCCCeE
Q 006662 423 LTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAA--LVDDPLW 500 (636)
Q Consensus 423 ~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~--l~~~~v~ 500 (636)
+.+|-++.+-+- ..+..+.|.+++-.=..+...+.. . ..+++|+|+|-|-=|-= +...++-
T Consensus 31 L~~wN~~~NLt~---------------~~~~~e~~~rHilDSl~~~~~~~~-~-~~~~~DIGSGaGfPGipLAI~~p~~~ 93 (215)
T COG0357 31 LLKWNKAYNLTA---------------IRDPEELWQRHILDSLVLLPYLDG-K-AKRVLDIGSGAGFPGIPLAIAFPDLK 93 (215)
T ss_pred HHHhhHhcCCCC---------------CCCHHHHHHHHHHHHhhhhhcccc-c-CCEEEEeCCCCCCchhhHHHhccCCc
Confidence 567777776332 345578999887543333332222 1 58999999997733333 3333332
Q ss_pred EEEecCCCCC-ccchH-HHHhhcc--cchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006662 501 VMNTVPVEAK-INTLG-VIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 576 (636)
Q Consensus 501 ~mnv~~~~~~-~~~l~-~~~eRgl--i~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i 576 (636)
.-++..... .+.|. ++.|=|| +.++|.--|.|..=++-||+|=| .+-+++..++-=.-.+|++||.++
T Consensus 94 -vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 94 -VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcch
Confidence 223332222 22332 3344555 34555444444432111999887 233566666666778999999874
Q ss_pred ---EEeCHHHHHHHHHHHhcCCCceEEeccC
Q 006662 577 ---IRDDVDILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 577 ---~~d~~~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
+.--.+++..+++....+.+.+..+..-
T Consensus 166 ~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 166 AYKGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred hhhHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 3455668888888888888888755433
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.5 Score=44.70 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred CcceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCCCcccee--eecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI--HADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp~t~Dl~--H~~~ 547 (636)
....||-.||..|....++.+ . .|+.+...|.... +.+.++-.|-- |.++.| .++|..|-++ ..|-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDV 146 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhcccccccE
Confidence 477999999999999999864 3 4689999998776 78888888865 667765 3355444332 2444
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCCce-EEeccCCCCCCcceEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 616 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 616 (636)
+|..-..+-..+.+++-+..-||+||+++|.- ..++...-.+.++.-..+. ...+.| |+.++.++|.
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~dH~~vv 224 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERDHAMVV 224 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTTEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCCcEEEE
Confidence 55544445556788899999999999999962 2233333333344433444 244455 5666666654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=87.59 E-value=3.6 Score=46.90 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEEe
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVM 271 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~~ 271 (636)
..+.++.+.+++...+.. +|.|-.||+|.+.....+. ...-..+.+.+++......|+.+ +++ +.+...
T Consensus 171 P~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 171 PREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred hHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 345667777777554444 8999999999877665543 11013455557777777777643 333 345555
Q ss_pred ccccCCC-----CCCCeeEEEeccccc--ccccC---------------------h-HHHHHHHHhcccCCcEEEEEeC
Q 006662 272 ASIRLPY-----PSRAFDMAHCSRCLI--PWGQY---------------------D-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 272 d~~~Lpf-----~~~sFDlV~~s~~L~--h~~~d---------------------~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+...-|. ..+.||.|+++.-+. .|... . ..++..+...|+|||+..+..|
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 5444442 336799999865441 22211 1 3688999999999998887766
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=87.49 E-value=5 Score=40.49 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=67.1
Q ss_pred EEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCC-CeeEEEecccccc
Q 006662 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSR-AFDMAHCSRCLIP 294 (636)
Q Consensus 222 VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~-sFDlV~~s~~L~h 294 (636)
|.||||--|.+..+|.+++.... +...|+++..++.|++. +. .+.+..+|... +++.+ ..|+|+...+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 68999999999999999976322 12228888888777643 32 36666666433 23333 3788887553311
Q ss_pred cccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecc
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~ 360 (636)
. -...|.+....++..-.|++.-. . ....+++.....+|..+.+
T Consensus 79 l---I~~ILe~~~~~~~~~~~lILqP~------------~-------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 L---IIEILEAGPEKLSSAKRLILQPN------------T-------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp H---HHHHHHHTGGGGTT--EEEEEES------------S--------HHHHHHHHHHTTEEEEEE
T ss_pred H---HHHHHHhhHHHhccCCeEEEeCC------------C-------ChHHHHHHHHHCCCEEEEe
Confidence 1 14566666677776677887722 1 1334677788889987764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=2.5 Score=43.88 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=52.2
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHH---HHHHHHcC-----------CCeEEEEec
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQ---VQFALERG-----------VPALIGVMA 272 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~---l~~A~erg-----------~~~~~~~~d 272 (636)
.|++.+.++.+...+|||.-+|.|..+..++.+|..++.+ +-++.. ++...++. ..+.+...+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~v---Er~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML---ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4566666666655589999999999999999998877666 444433 33333331 123344444
Q ss_pred ccc-CCCCCCCeeEEEecccc
Q 006662 273 SIR-LPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L 292 (636)
... |.-...+||+|+.--.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCC
Confidence 322 22123479999986655
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=87.32 E-value=4.5 Score=42.03 Aligned_cols=126 Identities=22% Similarity=0.265 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+.+|||||||.=-++..+... +...+++ |++..++++... -+++..+...|...-+ +....|+++..-++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~---DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAY---DIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEE---ESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEE---eCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 459999999999888877765 4555666 889888887643 3566777776655443 45679999987766
Q ss_pred cccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceE
Q 006662 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 293 ~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk 356 (636)
|..+.. ...-.++...++ .=.+++|.|....-.+.++ -.......++.++..-+|.
T Consensus 182 -p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 182 -PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp -HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTTCEE
T ss_pred -HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccCCce
Confidence 544333 122222333332 2356667663333222221 1112234577777777775
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.91 Score=41.18 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSF 246 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i 246 (636)
.....|||||+|-+..-|.+.|..+.++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 4479999999999999999999988888
|
; GO: 0008168 methyltransferase activity |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.51 Score=45.77 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=34.3
Q ss_pred CCCeeEEEecccccccc-------cCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWG-------QYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~-------~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
.++||.+.|..+++|.. -++ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 46799999988887763 122 4789999999999999999987
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=0.71 Score=47.91 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=32.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
...+|||+|||.|.+...|+++.. .|+.+|..+.+++.+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~ 70 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDD 70 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence 368999999999999999998743 455556665677777664
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.07 E-value=5.9 Score=41.19 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=56.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHH-------HcCCCeEEEEeccccC-C--CCCCC-eeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL-------ERGVPALIGVMASIRL-P--YPSRA-FDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~-------erg~~~~~~~~d~~~L-p--f~~~s-FDlV 286 (636)
..+||++|.|+|-.+..++.. +..++-.+..+.-+.+-.... +.|..+....++-... + +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 458999999999776666663 333333322122111111111 1122233332221111 1 11122 9999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++.++.+ ....+.++.-+...|-.+|.+++..+
T Consensus 167 lasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999843 34557888889999999997777654
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.06 E-value=8.6 Score=42.04 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=71.6
Q ss_pred ccCCCCCcEEEEeCCCCcHHHHHHhhcCC------EEEEcCcCCchHHHHH---HHHHcCCC--eEEEEeccccCC----
Q 006662 213 NLKDGSIRTAIDTGCGVASWGAYLMSRNI------LAVSFAPRDTHEAQVQ---FALERGVP--ALIGVMASIRLP---- 277 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~~v------~vv~i~p~Dis~a~l~---~A~erg~~--~~~~~~d~~~Lp---- 277 (636)
.+.+++ +|||+.+-.|+=++.|.+... .++ ..|.+...+. ....+-.. ..+...+....|
T Consensus 152 ~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vv---aND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 152 GVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVV---ANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred ccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeE---ecccCHHHHHHHHHHHhccCCcceeeecccceecccccc
Confidence 456666 999999999988888877522 222 2355544433 22233221 222222222222
Q ss_pred -----CCCCCeeEEEe-----ccccc--------c-cc--------cChHHHHHHHHhcccCCcEEEEEeCCCCcccccc
Q 006662 278 -----YPSRAFDMAHC-----SRCLI--------P-WG--------QYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWK 330 (636)
Q Consensus 278 -----f~~~sFDlV~~-----s~~L~--------h-~~--------~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~ 330 (636)
.....||-|+| ....+ . |. .-.-.+|..-.++||+||.++.|+-..+
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn------ 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN------ 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC------
Confidence 23456999987 11000 0 11 0013578888999999999999975332
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 331 GWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 331 ~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+.++.--..+.++.....+.|-.+.
T Consensus 301 ----pieNEaVV~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 301 ----PIENEAVVQEALQKVGGAVELVDVS 325 (375)
T ss_pred ----chhhHHHHHHHHHHhcCcccceeec
Confidence 2223333445566666666554433
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.99 E-value=0.62 Score=48.98 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=57.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhcccccc-CCCC-CccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM-STYP-RTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~-~~yp-~t~Dl~H~~~~fs~~~~ 554 (636)
.-.++|+|||.| .++...|. .-+++-|....-++.+-.-|-- .--.|.+. .+|+ .+||..-...+-+....
T Consensus 46 gsv~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~--~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGD--NVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCc--eeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 668999999976 45555442 1223334332222222222211 01112222 2343 78997666666666677
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEE
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++....+|-|+-|+|||||...|.
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 888999999999999999996664
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=85.42 E-value=7 Score=38.08 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=57.3
Q ss_pred eCCCCcHHHHHHhhc-----CCEEEEcCcCCchHHHH----------HHHHHcCCCeEEEEeccccCC----CCCCCeeE
Q 006662 225 TGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQV----------QFALERGVPALIGVMASIRLP----YPSRAFDM 285 (636)
Q Consensus 225 IGCGtG~~a~~La~~-----~v~vv~i~p~Dis~a~l----------~~A~erg~~~~~~~~d~~~Lp----f~~~sFDl 285 (636)
||=|.=+|+..|++. .+.++++ |..++.. +..++.|..+.+. .|+..+. ...+.||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~---ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSY---DSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeec---CchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCE
Confidence 566777888888876 3444555 3333222 2223445555443 3555554 35688999
Q ss_pred EEeccccccccc---C--------h-HHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQ---Y--------D-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~---d--------~-~~~L~el~RvLKPGG~Liis~p 321 (636)
|+-++-...... . . ..++..+.++|+++|.+.++..
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 998774422110 0 0 3578899999999999999864
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=5.1 Score=45.92 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=62.7
Q ss_pred CcEEEEeCCCC-cHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-----------C--C------
Q 006662 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----------L--P------ 277 (636)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-----------L--p------ 277 (636)
+.+||=+|||. |..+...++. |..++.+ |.+++.++.+++-|.. +...+..+ + .
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHH
Confidence 45999999996 5555556654 7666566 8898999998876643 22111111 0 0
Q ss_pred --CCC--CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 --YPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 --f~~--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+ +.+|+|+..-.. +-...+..+.+++.+.+||||.++..+-
T Consensus 240 ~~~~~~~~gaDVVIetag~-pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALI-PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCC-CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 469999975533 3222344446999999999999998754
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.1 Score=46.44 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=66.1
Q ss_pred cCCCCCcceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHH----Hhhcc---cchhh-ccc-cccCC-
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVI----YERGL---IGTYQ-NWC-EAMST- 535 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~----~eRgl---i~~~~-~~c-e~~~~- 535 (636)
|.+ ...|++.|.|.|++..+|+. . .|+..-+ ++.....+ .+-|+ +.+.| |.| +.|..
T Consensus 38 i~p---G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 38 IRP---GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp --T---T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCC---CCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 555 78999999999999999974 2 2444333 32333333 33455 44555 888 56732
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcc-cCCcEEEE-EeCHHHHHHHHHHHhcCCCce
Q 006662 536 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRIL-RPEGSVII-RDDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 536 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiL-rPgG~~i~-~d~~~~~~~~~~~~~~~~W~~ 598 (636)
....+|.|-. +-=+--..+--+-++| ||||.+.. +-..+++.+.-+.++...|.-
T Consensus 110 ~~~~~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3467887665 2222236788888999 99999876 456666666666666666754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.5 Score=44.24 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHhhcccCCcEEEEEeCH
Q 006662 559 EDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 559 ~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
..+|.|.-=+||+||.++..-++
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeH
Confidence 37999999999999999875443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=84.68 E-value=27 Score=36.28 Aligned_cols=133 Identities=18% Similarity=0.144 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCc-HHHHHHhhc--CCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMSR--NILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG-~~a~~La~~--~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~ 274 (636)
+..+.+..=+.....-.+++||=+|=.-- +++..|... .+.++ |+.+..+++ |.+.+.++.....|.
T Consensus 28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~i~~~~~Dl- 101 (243)
T PF01861_consen 28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLPIEAVHYDL- 101 (243)
T ss_dssp HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT--EEEE---T-
T ss_pred HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCceEEEEecc-
Confidence 33444443333333223569999997755 455555444 34444 666666654 456688887777775
Q ss_pred cCCCC---CCCeeEEEecccccccccCh-HHHHHHHHhcccCCc-EEEEEeCCCCccccccCCCCchhhhHHHHHHHHHH
Q 006662 275 RLPYP---SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349 (636)
Q Consensus 275 ~Lpf~---~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG-~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~l 349 (636)
+.|+| .++||++++-- ++..+. ..++......||.-| ..+++-. . .+.-...|.++++.
T Consensus 102 R~~LP~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~-~------------~~~s~~~~~~~Q~~ 165 (243)
T PF01861_consen 102 RDPLPEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFGFT-H------------KEASPDKWLEVQRF 165 (243)
T ss_dssp TS---TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEEE--T------------TT--HHHHHHHHHH
T ss_pred cccCCHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEEEe-c------------CcCcHHHHHHHHHH
Confidence 34444 47999999865 333333 678888899998766 4444321 0 01112345556776
Q ss_pred HHHhceE
Q 006662 350 ARSLCWK 356 (636)
Q Consensus 350 a~~l~Wk 356 (636)
+..+++-
T Consensus 166 l~~~gl~ 172 (243)
T PF01861_consen 166 LLEMGLV 172 (243)
T ss_dssp HHTS--E
T ss_pred HHHCCcC
Confidence 6677663
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=8.8 Score=41.83 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=60.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC--CCccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~~~ 553 (636)
...+|||+||..|||.-.|.+++. .|+.+|.. .+-+.+.+-+-+-.+. -..|..- ++.+|++-||-+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~--~d~fr~~p~~~~vDwvVcDmv----- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLR--ADGFKFRPPRKNVDWLVCDMV----- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEe--ccCcccCCCCCCCCEEEEecc-----
Confidence 467999999999999999999975 56666754 4445555555443332 1223323 477999988332
Q ss_pred CCcCHHHHHHHHhhcccCC--cEEEEE
Q 006662 554 DRCEMEDVLLEMDRILRPE--GSVIIR 578 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPg--G~~i~~ 578 (636)
|.-..++-=|-++|.-| ..+|+.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 33446777778888776 578886
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.20 E-value=6.3 Score=42.08 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=56.6
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEe--ccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVM--ASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~--d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+||=+||| .|.++..+++. +. .++.+ +.+++.++.+++.|....+... +..++....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA---DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE---eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 388888886 45666666665 55 34444 6677888888877754322111 11111111235898875321
Q ss_pred cccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. ...+....+.||+||.+++.+.
T Consensus 245 ---~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467788899999999999864
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.02 E-value=5.1 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.3
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR 239 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~ 239 (636)
.++. +|||+||..|+|+.-..++
T Consensus 68 ~p~~--~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 68 RPED--TVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CCCC--EEEEccCCCChHHHHHHHh
Confidence 3445 9999999999999888776
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=83.74 E-value=9.2 Score=40.29 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=71.5
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCcc---chHHHHhhcc-------cchhhccccccCC--------CC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN---TLGVIYERGL-------IGTYQNWCEAMST--------YP 537 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~---~l~~~~eRgl-------i~~~~~~ce~~~~--------yp 537 (636)
.--+||==|||+|-.|--++.++..+-. .+-+-- ...+|+.... ..-.|.||...+. +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~g---nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQG---NEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEE---EEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999775421 122111 1244444321 2344555432222 22
Q ss_pred ---------Cccceeeeccccc-cCCCC------------------cCHHHHHHHHhhcccCCcEEEE--------EeC-
Q 006662 538 ---------RTYDLIHADSIFS-LYKDR------------------CEMEDVLLEMDRILRPEGSVII--------RDD- 580 (636)
Q Consensus 538 ---------~t~Dl~H~~~~fs-~~~~~------------------c~~~~~l~e~dRiLrPgG~~i~--------~d~- 580 (636)
..=+|-.+.|=|. .|... -++-++|-.+.++|||||++|= .+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0111222223332 22221 1355899999999999997663 233
Q ss_pred ------HH-HHHHHHHHHhcCCCceEE
Q 006662 581 ------VD-ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 581 ------~~-~~~~~~~~~~~~~W~~~~ 600 (636)
++ .++.|+++++.+.|+...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 33 679999999999999875
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.59 E-value=2.5 Score=46.76 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHH----HcCCC-eEEEEeccccCC---CCCCC
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVP-ALIGVMASIRLP---YPSRA 282 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~----erg~~-~~~~~~d~~~Lp---f~~~s 282 (636)
.+..+.+|||+.+-.|.=+.++|.. |+ ++.. |.++..++... +-|+. ......|...+| ++. +
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~-I~An---D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGV-IFAN---DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCce-EEec---ccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-c
Confidence 3444559999999999655555543 43 2233 66666554433 33543 445555665554 444 8
Q ss_pred eeEEE----ecc--ccc-----ccc----------cChHHHHHHHHhcccCCcEEEEEeCCC
Q 006662 283 FDMAH----CSR--CLI-----PWG----------QYDGLYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 283 FDlV~----~s~--~L~-----h~~----------~d~~~~L~el~RvLKPGG~Liis~p~~ 323 (636)
||-|+ |+. ++. -+. .-+.++|......+++||+|+.++-.+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99998 444 220 000 011367888899999999999997533
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=83.49 E-value=7.6 Score=41.62 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=58.5
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEeccccccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L--pf~~~sFDlV~~s~~L~h~ 295 (636)
.+||=+|+| .|.++..+++. +..++.++..+.++...+++++.|... ........ ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g---- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG---- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC----
Confidence 388999987 46777777765 666666654455677788887766532 11111110 001245888875331
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....+.+..+.|++||.+++.+.
T Consensus 248 ---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---CHHHHHHHHHHccCCcEEEEEec
Confidence 12467889999999999988764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.41 E-value=8 Score=39.96 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=71.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC----Cccceeeecccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP----RTYDLIHADSIFSL 551 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp----~t~Dl~H~~~~fs~ 551 (636)
..+++||+|+-+|||--.|.+++. --|..+|-..+||.-=+....==+.+.-+-.+.-.| .-.|++-|+--|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI- 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI- 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence 579999999999999999988754 112223333344333222222000000000111111 2356777654442
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCCceEE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~~ 600 (636)
.+..+|-.+..+|.|+|-++.- |+ ..++.+|.+.++.+.|.+.-
T Consensus 156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 3467999999999999998874 32 34888999999999999873
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.37 E-value=11 Score=40.14 Aligned_cols=92 Identities=21% Similarity=0.163 Sum_probs=57.4
Q ss_pred ccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 213 NLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
...+++ +||=.|+| .|.++..+++. +..++.+ +.+++..+.+++.|....+. .... ..+.+|+++-..
T Consensus 162 ~~~~g~--~VlV~G~g~iG~~a~~~a~~~G~~vi~~---~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~ 231 (329)
T TIGR02822 162 SLPPGG--RLGLYGFGGSAHLTAQVALAQGATVHVM---TRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFA 231 (329)
T ss_pred CCCCCC--EEEEEcCCHHHHHHHHHHHHCCCeEEEE---eCChHHHHHHHHhCCceecc---cccc--CcccceEEEECC
Confidence 344555 89999975 45555666664 6655555 55667788888877543221 1111 124578765322
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ...+....+.|++||.+++.+.
T Consensus 232 ~~-------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 PA-------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred Cc-------HHHHHHHHHhhCCCcEEEEEec
Confidence 11 2468888999999999998864
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.37 E-value=1.9 Score=45.73 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---------CCCeEEEEeccccC--CCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~L--pf~~~sFDlV 286 (636)
.++++|-||-|.|.+.+...++. .+-.+.-.++.+..++..++- +..+.+..+|...+ ....+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 35689999999999998888772 111222224455555544321 34466666664332 2447899999
Q ss_pred EecccccccccCh----HHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~ 320 (636)
+.-..= +..+.- +.++..+.+.||+||+++..+
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 862211 111111 467888999999999999985
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=82.15 E-value=0.96 Score=46.65 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=31.4
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
....+|||+|||.|.+...|+++.- .|+.+|..+.+++.+.++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 4468999999999999999988742 244455555677666544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.84 E-value=2.3 Score=47.04 Aligned_cols=146 Identities=19% Similarity=0.224 Sum_probs=86.5
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccch
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGT 525 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~ 525 (636)
+-++|.+|-.+-..=+. +..... .+.|||+=|.+|||+-+.+.-+- -.|+.+|.+..-|+.+.+- |+-+.
T Consensus 195 ~g~kTGfFlDqR~~R~~-l~~~~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 195 DGLKTGFFLDQRDNRRA-LGELAA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CcccceeeHHhHHHHHH-Hhhhcc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 44556666555332222 212222 67999999999999877766544 2334447775566665543 44444
Q ss_pred hhccc--cccCCC---CC---ccceeeecc-ccccCCCC-----cCHHHHHHHHhhcccCCcEEEEEe------CHHHHH
Q 006662 526 YQNWC--EAMSTY---PR---TYDLIHADS-IFSLYKDR-----CEMEDVLLEMDRILRPEGSVIIRD------DVDILV 585 (636)
Q Consensus 526 ~~~~c--e~~~~y---p~---t~Dl~H~~~-~fs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~ 585 (636)
-|.|- ..|.-. -| +||+|-.|= -|+..+.. =+..+++...-+||+|||.+++.- ....+.
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~ 348 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence 45553 234332 23 999987642 24433222 134589999999999999999973 334566
Q ss_pred HHHHHHhcCCCceEEe
Q 006662 586 KIKSITDGMEWEGRIA 601 (636)
Q Consensus 586 ~~~~~~~~~~W~~~~~ 601 (636)
.|.+-+..+.=..++.
T Consensus 349 ~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 349 IIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHHHHHhcCCcEEEe
Confidence 6666655554444443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=80.74 E-value=6.8 Score=41.96 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er 262 (636)
+.+.+.+.+...++. .++|.-+|.|..+..++++ ...++++ |.++.+++.++++
T Consensus 8 ll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigi---D~D~~Al~~ak~~ 63 (305)
T TIGR00006 8 LLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGI---DRDPQAIAFAKER 63 (305)
T ss_pred hHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHH
Confidence 445566666555555 8999999999999999986 3566677 8899999998765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.05 E-value=1.5 Score=44.88 Aligned_cols=98 Identities=14% Similarity=0.285 Sum_probs=67.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh---cccchhhccccccCCCC-Cccceeeeccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
...-.++|+||+.|-.+..|...+| --++-.|.+-.|++-..+- +++-.|-.=-|-|..|- +++|||-.+ .|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS--ls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS--LS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh--hh
Confidence 3467899999999999999999987 2233345555676665544 66555554457777785 999986540 11
Q ss_pred -cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 551 -LYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 551 -~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.|. -+++--|...--+|+|.|.||-+
T Consensus 147 lHW~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhh--ccCchHHHHHHHhcCCCccchhH
Confidence 111 34567788888899999999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 636 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 3e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-06 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 3e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 4e-06 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-05 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 3e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 6e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 6e-05 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 9e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 1e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-04 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 3e-04 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 3e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 4e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 1e-10
Identities = 81/606 (13%), Positives = 165/606 (27%), Gaps = 177/606 (29%)
Query: 81 HHQAPDPPPTLARVTY---IPPCDPKYVENVPCEDTHRSLK--FDRDRL--IYRERHCPE 133
HH D + Y + + +V+N C+D K ++ + I +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 134 KTELLKCRVPAPHGYTVPFRWPES--RQFAWYANVPHKELTVEKKNQNWV--RFQGDRFS 189
T L + E ++F V + N ++ +
Sbjct: 63 GTLRL---------FWTLLSKQEEMVQKFV---------EEVLRINYKFLMSPIK-TEQR 103
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
P T YI+ +L N D + N+ R
Sbjct: 104 QPSMMT------RMYIEQRDRLYN--DNQV----------------FAKYNV------SR 133
Query: 250 DTHEAQVQFALERGVPA-LIGVMASIRLPYPSRAFDMAHCSR-CLIPWGQYDGLYLIEV- 306
+++ AL PA + + + + + ++V
Sbjct: 134 LQPYLKLRQALLELRPAKNVLI------------DGVLGSGKTWVA----------LDVC 171
Query: 307 --DRVLR--PGG-YWILSG----PPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357
+V +W+ P E K + + S + I + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 358 LIQKKDLAIWQKPTNHVHC------IANRRVFKKPRF---CK------------AQDPDM 396
+ + L + + +C + N + + F CK
Sbjct: 232 A-ELRRLLKSKP---YENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 397 AWYTKMETCLTPLPEVSNIKEIAGGQLTKWPE-RLNAIPPRVNRGA--VDGVTAEMFRED 453
+ ++ L +K + L K+ + R +P V + AE R+
Sbjct: 286 TTHISLDHHSMTLTP-DEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 454 TALWK--KRVTYYK-------SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD---P--- 498
A W K V K S++ +P YR + D L F P
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDR---LSVF----PPSAHIPTIL 391
Query: 499 ---LWV-MNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 554
+W + V +N L ++ L+ + E+ + P Y + ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL---HKYSLVE--KQPKESTISIPSIYLELKVKL-----EN 441
Query: 555 RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKIL 614
+ +++ I + D D++ D + I H E++
Sbjct: 442 EYALHRSIVDHYNIPKT------FDSDDLI---PPYLDQY-FYSHIGHHLKNIEHPERMT 491
Query: 615 FANKKY 620
+
Sbjct: 492 LFRMVF 497
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 22/157 (14%)
Query: 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILA 243
+ G D D++ L++++ G +D GCG+ L + +
Sbjct: 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTG 89
Query: 244 VSFAPRDTHEAQVQFALER----GVPALIG--VMASIRLPYPSRAFDMAHCSRCLIPWGQ 297
+ QV A R G+ + ++ LP+ +FD L
Sbjct: 90 I-----SISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD 144
Query: 298 YDGLYLIEVDRVLRPGGY-----WILSGPPVNWESHW 329
E+ RVLRPGG ++L P +
Sbjct: 145 RGRALR-EMARVLRPGGTVAIADFVLLAPVEGAKKEA 180
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 25/149 (16%)
Query: 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEA 254
P +A + + L D + D GCG +L I + D
Sbjct: 28 PGSPEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI-----DLFPD 80
Query: 255 QVQFALER----GVPALIG-VMASIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR 308
++ E + + S+ LP+ + D+ + G + E +
Sbjct: 81 FIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG--FERGMNEWSK 138
Query: 309 VLRPGGY-------WILSGPPVNWESHWK 330
L+ GG+ W S P E W
Sbjct: 139 YLKKGGFIAVSEASWFTSERPAEIEDFWM 167
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 6/158 (3%)
Query: 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTH 252
M + K N + +D G G + + +
Sbjct: 2 MKTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLK 60
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLR 311
+A+ F+ E I +LP+ + + + + D + E+ RVL+
Sbjct: 61 KAE-NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119
Query: 312 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349
PGG ++ E + KG + + G + I
Sbjct: 120 PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVI 157
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 28/180 (15%)
Query: 195 TMFPRGADAYIDDIGKLIN-----------LKDGSIRTAIDTGCGVASWGAYLMSR--NI 241
+ +G +I+ G +D G G W +L S I
Sbjct: 7 KAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQI 66
Query: 242 LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI--PWGQYD 299
+ A R A+ V G + L + + LI G+
Sbjct: 67 EGLEPATRLVELARQTHP---SVTFHHGTIT--DLSDSPKRWAGLLAWYSLIHMGPGELP 121
Query: 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG-----WNRTTEDLKS--EQNGIETIARS 352
L+ + + GG ++S + +L E G + +
Sbjct: 122 DA-LVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 26/155 (16%)
Query: 193 GGTMFPRGADAY----------IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N 240
G +++ Y ++ I L+NL GS D G G + L ++
Sbjct: 1 GMSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGS--VIADIGAGTGGYSVALANQGLF 58
Query: 241 ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299
+ AV + Q A+ V G L P ++ D + + +
Sbjct: 59 VYAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILAIHHFSHLE 111
Query: 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR 334
E+ R++R G +L+ + + W
Sbjct: 112 -KSFQEMQRIIRDGTIVLLT---FDIRLAQRIWLY 142
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 29/173 (16%)
Query: 224 DTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPS 280
+ GCG +++ ++ A D A R G P + +
Sbjct: 49 ELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRPVRTMLFHQLDAI--- 100
Query: 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG---WNRTT 336
A+D CL+ + + L + R L+PGG + S E K +N +
Sbjct: 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPS 160
Query: 337 ED-LKS--EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKP 386
E+ L++ + G + Q+ +H +KP
Sbjct: 161 EEWLRARYAEAGTWASVAVESS------EGKGFDQELAQFLHVSV-----RKP 202
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 19/171 (11%)
Query: 174 EKKNQNWVRFQGDRFS--FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVAS 231
+N+ F+ + F P + + + + NL + S D GCG
Sbjct: 2 SNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--LIADIGCGTGG 59
Query: 232 WGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALI-GVMASI-RLPYPSRAFDMA 286
L + + F + A + G+ + G++ S+ LP+ + D+
Sbjct: 60 QTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGLQNRVTGIVGSMDDLPFRNEELDLI 118
Query: 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGY-------WILSGPPVNWESHWK 330
+ G L E + L+ GGY W P W
Sbjct: 119 WSEGAIYNIG--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM 167
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA 254
A+ + G+ ++ GCG+ + L I ++ +P +A
Sbjct: 20 EQAETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 255 QVQFALERGVPALIGVMASI-RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG 313
+ + + G+ + + A+I LP+ +FD L + L + +VL+PG
Sbjct: 78 R-ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE-ALKSLKKVLKPG 135
Query: 314 G 314
G
Sbjct: 136 G 136
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 224 DTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPS 280
D GCG G YL + ++L D + +A + P V+ +
Sbjct: 52 DAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQD-FPEARWVVGDLSVDQISE 105
Query: 281 RAFDMAHCSRCLIPWGQYDGLY--LIEVDRVLRPGGYWILS-GPPVNW 325
FD+ + ++ + DG L + R L G ++ G W
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGW 153
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 211 LINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGV 270
L D +D GCG + +F D + ++ A +R P +
Sbjct: 78 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRY-PQVTFC 135
Query: 271 MASIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHW 329
+AS LP+ + D E+ RV++PGG+ I + P
Sbjct: 136 VASSHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPGGWVITATPGPRHLMEL 187
Query: 330 KGW 332
KG
Sbjct: 188 KGL 190
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 214 LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIG- 269
L D + +T +D GCG Y +L + D E + A + ++
Sbjct: 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCY 94
Query: 270 VMASIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP-PVNWES 327
+I + A+++ S + + +V L+ G +I S PV
Sbjct: 95 EQKAIEDIAIEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTAD 153
Query: 328 HWKGW 332
+ W
Sbjct: 154 GRQDW 158
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 224 DTGCGVASWGAYL--MSRNILAVSFAPRDTHEAQVQFALERGVPALIG-VMASI-RLPYP 279
D GCG L + V + +Q ERG + + + LP+
Sbjct: 59 DVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPFE 113
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS--GPPVNWESHW 329
+ F+ L + L E+ RVL+ GY ++ GP +
Sbjct: 114 NEQFEAIMAINSLEWTEEPLR-ALNEIKRVLKSDGYACIAILGPTAKPRENS 164
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPR 249
T+F ++I + G+ ID G G + L + +I A+ F+
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSKH 77
Query: 250 DTHEAQVQFALERGVPALIG-VMASI-RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD 307
A + + + I V + +P D+ + W + E+
Sbjct: 78 MNEIAL-KNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFR-EIY 135
Query: 308 RVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC---WKKLIQK 361
R+L+ GG + G N E + ++ ++ +
Sbjct: 136 RILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDE 192
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 17/136 (12%)
Query: 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR-- 249
G + G +A I I L + S +D G G G + +
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSG---LGG--GCM-YINEKYGAHTH 82
Query: 250 --DTHEAQVQFALER-GVPALIGVM-ASIR-LPYPSRAFDMAHCSRCLIPWGQYD-GLYL 303
D V A ER I I +P FD+ + ++ +
Sbjct: 83 GIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLF 142
Query: 304 IEVDRVLRPGGYWILS 319
+ + L+P G +++
Sbjct: 143 QKCYKWLKPTGTLLIT 158
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278
+ G +L S + AV + +A+ Q A E+GV
Sbjct: 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQEKGVKITTVQSNLADFDI 90
Query: 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 338
+ A++ C +P +V + L+PGG +IL G + G + +
Sbjct: 91 VADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDL 149
Query: 339 LKSE 342
L
Sbjct: 150 LPKL 153
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA 259
+ I+ + L+ +D CGV + L ++ V D E ++ A
Sbjct: 22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGV-----DISEDMIRKA 76
Query: 260 LER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGG 314
E V + +L + + FD ++ + + EV RVL+P G
Sbjct: 77 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
Query: 315 YWILSGPPVNWESHW 329
+I+ +
Sbjct: 137 KFIMYFTDLRELLPR 151
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVM-ASI- 274
+D GCG + + +L + + + + A G I A +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLD 99
Query: 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
+L P +FD+A S + + + V + L PGG+++ S
Sbjct: 100 KLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 9/139 (6%)
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RG+ + + R +D GCG + I ++ D +E ++F
Sbjct: 22 RGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKF 78
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL--IPWGQYDGLYLIEVDRVLRPGGYW 316
E + P + D S + + + L L ++ Y
Sbjct: 79 C-EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFEL-LSLCYSKMKYSSYI 136
Query: 317 ILSGPPVNWESHWKGWNRT 335
++ P N S + N
Sbjct: 137 VIESP--NPTSLYSLINFY 153
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 22/142 (15%)
Query: 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHE 253
F AY+ ++ + L ++ G G G + + + + V + E
Sbjct: 26 RWFLVHRFAYLSELQAVKCLLPEG--RGVEIGVGT---GRFAVPLKIKIGV-----EPSE 75
Query: 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR--CLIPWGQYD-GLYLIEVDRVL 310
+ A +RGV L G LP +FD A C + D L E R+L
Sbjct: 76 RMAEIARKRGVFVLKGTAE--NLPLKDESFDFALMVTTICFVD----DPERALKEAYRIL 129
Query: 311 RPGGYWILSGPPVNWESHWKGW 332
+ GGY I+ + ES
Sbjct: 130 KKGGYLIVGIV--DRESFLGRE 149
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 636 | |||
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.55 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.53 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.52 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.52 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.52 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.51 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.5 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.49 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.49 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.49 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.49 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.49 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.49 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.47 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.46 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.45 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.45 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.45 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.44 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.44 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.44 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.44 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.43 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.42 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.41 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.41 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.41 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.41 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.4 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.4 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.4 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.4 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.4 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.4 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.39 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.39 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.38 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.38 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.38 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.36 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.35 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.35 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.34 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.34 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.33 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.33 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.32 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.32 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.32 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.32 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.32 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.32 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.29 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.28 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.27 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.27 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.26 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.26 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.26 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.26 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.26 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.25 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.25 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.24 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.23 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.22 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.22 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.22 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.21 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.21 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.21 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.21 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.19 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.18 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.18 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.17 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.17 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.17 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.17 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.16 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.16 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.16 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.15 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.15 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.15 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.14 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.14 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.13 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.13 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.13 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.12 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.12 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.12 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.11 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.11 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.11 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.11 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.1 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.09 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.09 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.08 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.08 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.07 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.07 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.07 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.07 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.06 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.06 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.06 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.06 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.06 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.06 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.06 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.05 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.05 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.05 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.04 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.04 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.03 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.03 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.03 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.02 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.02 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.02 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.01 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.01 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.01 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.0 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.0 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.0 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.99 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.99 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.99 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.98 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.98 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.98 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.98 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.97 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.97 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.97 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.96 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.96 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.96 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.95 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.95 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.94 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.94 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.94 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.94 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.93 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.93 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.92 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.92 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.91 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.91 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.91 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.9 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.9 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.88 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.88 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.87 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.86 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.86 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.85 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.85 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.85 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.85 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.84 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.83 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.83 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.82 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.81 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.81 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.81 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.8 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.8 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.8 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.8 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.79 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.78 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.78 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.78 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.78 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.77 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.77 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.77 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.76 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.76 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.76 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.75 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.75 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.75 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.75 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.74 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.74 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.74 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.74 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.73 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.73 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.73 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.72 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.72 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.72 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.71 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.71 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.71 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.7 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.7 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.7 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.69 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.69 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.69 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.69 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.68 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.68 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.68 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.68 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.68 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.67 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.67 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.67 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.67 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.66 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.66 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.65 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.64 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.64 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.63 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.63 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.63 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.62 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.62 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.62 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.62 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.61 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.61 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.61 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.6 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.6 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.6 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.6 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.6 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.6 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.59 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.59 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.59 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.59 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.58 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.58 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.58 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.58 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.58 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.58 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.57 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.57 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.57 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.56 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.56 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.55 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.55 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.54 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.54 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.54 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.54 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.53 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.52 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.52 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.52 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.52 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.52 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.52 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.51 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.51 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.51 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.51 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.51 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.5 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.5 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.49 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.49 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.49 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.48 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.48 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.48 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.48 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.47 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.47 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.47 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.47 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.47 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.46 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.46 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.46 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.45 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.44 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.44 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.44 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.43 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.42 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.41 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.4 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.4 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.4 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.4 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.39 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.39 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.39 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.39 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.39 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.38 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.38 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.36 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.36 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.36 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.34 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.34 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.32 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.31 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.31 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.3 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.3 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.3 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.3 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.29 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.28 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.28 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.26 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.24 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.24 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.24 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.23 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.23 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.21 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.19 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.17 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.17 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.16 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.16 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.15 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.14 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.11 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.11 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.1 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.08 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.08 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.08 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.08 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.08 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.07 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.06 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.06 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.06 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.06 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.06 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.04 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.04 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.04 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.04 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.03 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.03 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.03 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.02 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.02 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.02 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.02 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.02 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.01 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.01 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.01 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.0 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.0 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.99 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.98 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.98 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.98 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.97 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.97 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.97 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 97.97 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.96 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.95 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.94 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.93 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.93 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.93 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.92 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 97.92 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.91 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.91 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.9 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.9 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.89 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.88 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.87 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.86 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.86 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.86 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.86 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.85 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.85 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.85 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.84 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.83 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.81 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.81 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.8 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.79 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.79 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.78 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.78 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.77 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 97.76 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.76 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.75 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.75 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.74 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 97.74 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.72 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.71 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.71 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 97.71 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.7 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.69 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.68 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.67 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.67 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.66 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.66 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.65 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.64 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.63 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 97.63 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.63 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.62 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.61 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.6 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.59 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.59 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.59 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 97.57 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.55 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.54 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.54 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.53 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.53 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.52 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.52 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.52 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.49 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.47 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.47 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.47 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.45 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.44 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.37 |
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=139.49 Aligned_cols=135 Identities=12% Similarity=0.041 Sum_probs=106.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc-cC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG-QY 298 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~-~d 298 (636)
.+|||||||+|.++..|++++..++++ |+++.+++.++++...+.+..++...+++++++||+|++..+++|+. .+
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTCCEEEE---CCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CeEEEecCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 389999999999999999998777777 99999999999988889999999999999899999999999997775 35
Q ss_pred hHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 299 ~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
...+++++.++|||||++++..+.......... ..........+.+.++++..+|+.+.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH--PVATAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECC--SSSCEEECCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhc--hhhhhccCCHHHHHHHHHHCCCcEEE
Confidence 689999999999999999998753332111110 00011112245677888889998765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-15 Score=149.38 Aligned_cols=110 Identities=23% Similarity=0.267 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~ 281 (636)
.+.++.|.+..+ ...+|||||||+|.++..|++++..++++ |+|+.|++.|++ ..++.+.+++.+.+|++++
T Consensus 27 ~~l~~~l~~~~~----~~~~vLDvGcGtG~~~~~l~~~~~~v~gv---D~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 27 RALFRWLGEVAP----ARGDALDCGCGSGQASLGLAEFFERVHAV---DPGEAQIRQALR-HPRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHHHSS----CSSEEEEESCTTTTTHHHHHTTCSEEEEE---ESCHHHHHTCCC-CTTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHHHhcC----CCCCEEEEcCCCCHHHHHHHHhCCEEEEE---eCcHHhhhhhhh-cCCceeehhhhhhhcccCC
Confidence 445566666543 22489999999999999999998888777 999999988854 4578999999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|+|..++ ||. ++..++.++.|+|||||.|++...
T Consensus 99 sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 99 SVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999999999 776 678999999999999999999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=140.94 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=114.2
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc--CCCeEEEEeccccCCCCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRLPYPSR 281 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er--g~~~~~~~~d~~~Lpf~~~ 281 (636)
.++.+.+.++ ++. +|||||||+|.++..+++++..++++ |+++.+++.++++ ..++.+...|...++++++
T Consensus 43 ~~~~l~~~~~--~~~--~vLDiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 115 (242)
T 3l8d_A 43 IIPFFEQYVK--KEA--EVLDVGCGDGYGTYKLSRTGYKAVGV---DISEVMIQKGKERGEGPDLSFIKGDLSSLPFENE 115 (242)
T ss_dssp HHHHHHHHSC--TTC--EEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTT
T ss_pred HHHHHHHHcC--CCC--eEEEEcCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhcccCCceEEEcchhcCCCCCC
Confidence 4445555442 333 89999999999999999998877777 9999999999877 3568899999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCC----CCchhhhHHHHHHHHHHHHHhceEe
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGW----NRTTEDLKSEQNGIETIARSLCWKK 357 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W----~~t~e~l~~~~~~ie~la~~l~Wk~ 357 (636)
+||+|++..+++|+ +++..++.++.++|||||++++..+..........| .............++++++..+|+.
T Consensus 116 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 194 (242)
T 3l8d_A 116 QFEAIMAINSLEWT-EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKV 194 (242)
T ss_dssp CEEEEEEESCTTSS-SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred CccEEEEcChHhhc-cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEE
Confidence 99999999999666 588999999999999999999987432211110000 0000001122346788889999988
Q ss_pred ecccccEEEEeCCC
Q 006662 358 LIQKKDLAIWQKPT 371 (636)
Q Consensus 358 v~~~~~~aIWqKp~ 371 (636)
+.. ..+|..+.
T Consensus 195 ~~~---~~~~~~~~ 205 (242)
T 3l8d_A 195 VDG---IGVYKRGV 205 (242)
T ss_dssp EEE---EEEECTTC
T ss_pred EEe---ecccccCc
Confidence 754 33455443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=141.07 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=86.4
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc-----------------CCCeEEEE
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER-----------------GVPALIGV 270 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er-----------------g~~~~~~~ 270 (636)
+.+.+...++. +|||+|||+|.++.+|++++..++++ |+|+.|++.|+++ ..++.+.+
T Consensus 14 ~~~~l~~~~~~--~vLD~GCG~G~~~~~la~~g~~V~gv---D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 14 YWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHhcccCCCC--EEEEeCCCCcHhHHHHHHCCCeEEEE---eCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 33334444444 99999999999999999998888888 9999999999865 24678999
Q ss_pred eccccCCCCC-CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 271 MASIRLPYPS-RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 271 ~d~~~Lpf~~-~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+|...+++++ ++||+|++..+++++..+. ..+++++.|+|||||++++.
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998775 8999999988887665322 57999999999999984444
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=138.46 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=99.0
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccc
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASI 274 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~ 274 (636)
.+.....+.+.+.+...++. +|||||||+|.++..++++ +..++++ |+++.+++.++++. ..+.+...|..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~ 112 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENS--KVLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDIL 112 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHTCCSCTTEEEEECCTT
T ss_pred cchHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHhhcCCCeEEEECccc
Confidence 33444556666666555554 9999999999999999997 7777777 99999999998875 46889999999
Q ss_pred cCCCCCCCeeEEEecccccccc-cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~-~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+|+++++||+|++..+++|+. .++..+++++.|+|||||++++..+
T Consensus 113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999999999999997763 4568999999999999999999875
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=137.45 Aligned_cols=136 Identities=14% Similarity=0.013 Sum_probs=102.4
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d 298 (636)
.+|||||||+|.++..+++.+..++++ |+++.+++.|+++.. ++.+...+...+ +++++||+|++..+++|+ ++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~-~~ 118 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI-DD 118 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEE---ESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC-SS
T ss_pred CcEEEECCCCCHHHHHHHHhCCcEEEE---eCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh-cC
Confidence 379999999999999999987766677 899999999988765 688888888777 577899999999999766 48
Q ss_pred hHHHHHHHH-hcccCCcEEEEEeCCCCccc--------cccCCCC-chhh------hHHHHHHHHHHHHHhceEeecc
Q 006662 299 DGLYLIEVD-RVLRPGGYWILSGPPVNWES--------HWKGWNR-TTED------LKSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 299 ~~~~L~el~-RvLKPGG~Liis~p~~~w~~--------~~~~W~~-t~e~------l~~~~~~ie~la~~l~Wk~v~~ 360 (636)
+..+++++. |+|||||+++++.|...... ....|.. .... .....+.+.++++..+|+.+..
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 899999999 99999999999986443210 0000000 0000 0113456778888888987654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-14 Score=141.02 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=91.5
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~~ 280 (636)
+.+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.|+++ + .++.+..+|...+|+++
T Consensus 27 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 27 AKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAF---DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHhCCCCCC--EEEEEeCCCCHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3455555555444 99999999999999999987777777 8899999888754 3 35889999999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+++.+++|+ +++..+|.++.|+|||||+|++..+
T Consensus 102 ~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999999999999665 5889999999999999999999754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=134.22 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=112.2
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf 278 (636)
.+.+.+...++. +|||+|||+|.++..+++.+ ..++++ |+++.+++.++++ +. ++.+...|...+++
T Consensus 28 ~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 102 (219)
T 3dh0_A 28 KVLKEFGLKEGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYAI---DVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL 102 (219)
T ss_dssp HHHHHHTCCTTC--EEEESSCTTCTTHHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS
T ss_pred HHHHHhCCCCCC--EEEEEecCCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC
Confidence 445555555554 99999999999999999875 566677 8899998888654 32 58899999999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
++++||+|+++.+++|+ .++..+++++.++|||||++++..+....... ..........+.+.++++..+|+.+
T Consensus 103 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~ 176 (219)
T 3dh0_A 103 PDNTVDFIFMAFTFHEL-SEPLKFLEELKRVAKPFAYLAIIDWKKEERDK-----GPPPEEVYSEWEVGLILEDAGIRVG 176 (219)
T ss_dssp CSSCEEEEEEESCGGGC-SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----SCCGGGSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCeeEEEeehhhhhc-CCHHHHHHHHHHHhCCCeEEEEEEeccccccc-----CCchhcccCHHHHHHHHHHCCCEEE
Confidence 99999999999999666 58899999999999999999998642221111 0111111234567788889999876
Q ss_pred cccc-----cEEEEeCCC
Q 006662 359 IQKK-----DLAIWQKPT 371 (636)
Q Consensus 359 ~~~~-----~~aIWqKp~ 371 (636)
.... ...+.+|+.
T Consensus 177 ~~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 177 RVVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp EEEEETTTEEEEEEECC-
T ss_pred EEEeeCCceEEEEEEecc
Confidence 5321 245667764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=142.40 Aligned_cols=116 Identities=15% Similarity=0.213 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHhh----ccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----C--CCeEE
Q 006662 200 GADAYIDDIGKLI----NLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G--VPALI 268 (636)
Q Consensus 200 g~~~~id~L~~lL----~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~ 268 (636)
......+.+.+.+ ...++. +|||||||+|.++..+++. +..++++ |+++.+++.|+++ + ..+.+
T Consensus 62 ~~~~~~~~l~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~ 136 (297)
T 2o57_A 62 ASLRTDEWLASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCL---NIAPVQNKRNEEYNNQAGLADNITV 136 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred HHHHHHHHHHHHhhhccCCCCCC--EEEEeCCCCCHHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHhcCCCcceEE
Confidence 3445556666666 444444 9999999999999999987 7777777 8899999888754 3 35889
Q ss_pred EEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 269 ~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+|...+|+++++||+|++..+++|+. ++..+++++.|+|||||++++..+
T Consensus 137 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 137 KYGSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EECCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCcccCCCCCCCEeEEEecchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999997775 689999999999999999999875
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=140.71 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC--CC
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PY 278 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L--pf 278 (636)
.+...+.+.+.++... ...+|||||||+|.++..+++.+..++++ |+++.+++.++++ +.+...+.... ++
T Consensus 25 ~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~---~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 25 RELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKFCEGK---FNVVKSDAIEYLKSL 97 (240)
T ss_dssp HHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTCCEEEE---CSCHHHHHHHHTT---SEEECSCHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCCcEEEE---ECCHHHHHHHHhh---cceeeccHHHHhhhc
Confidence 4555556666655322 23489999999999999999988777777 9999999999877 67777777664 78
Q ss_pred CCCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeCCCCcccccc-CCCCchhhhHHHHHHHHHHHHHhce
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWK-GWNRTTEDLKSEQNGIETIARSLCW 355 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w~~~~~-~W~~t~e~l~~~~~~ie~la~~l~W 355 (636)
++++||+|++..+++|+. ++ ..+++++.++|||||++++..+......... .|...........+.+.++++..+|
T Consensus 98 ~~~~fD~i~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 176 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLD-PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGF 176 (240)
T ss_dssp CTTCBSEEEEESCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTC
T ss_pred CCCCeeEEEECCchhhCC-cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCC
Confidence 899999999999997765 44 8999999999999999999976433210000 0101111111123557778888888
Q ss_pred Eee
Q 006662 356 KKL 358 (636)
Q Consensus 356 k~v 358 (636)
+.+
T Consensus 177 ~~~ 179 (240)
T 3dli_A 177 RDV 179 (240)
T ss_dssp EEE
T ss_pred eEE
Confidence 754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=138.75 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=92.7
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCCCCCCe
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf~~~sF 283 (636)
.+.+.++..++ .+|||||||+|.++..+++.+. .++++ |+++.+++.++++. ..+.+..+|...+++++++|
T Consensus 35 ~l~~~~~~~~~--~~vLD~GcG~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 35 ELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAKKVLGI---DLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHTTCCCCTT--CEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHhhhccCC--CEEEEECCCCCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCe
Confidence 44555543333 4999999999999999999976 67777 99999999998774 46889999999999999999
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|++..+++|+ .++..+++++.++|||||+++++.+
T Consensus 110 D~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 110 NVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999666 6889999999999999999999854
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=137.84 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
....++.+.+.+...++. +|||||||+|.++..+++. +..++++ |+++.+++.|+++ +. ++.+..+|.
T Consensus 21 ~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 21 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGI---DMSSLFTAQAKRRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence 355667777777666555 9999999999999999987 6667777 8899998888654 33 488999999
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+++ +++||+|+|..+++|+. ++..+++++.|+|||||++++..+
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCc-CCCCCEEEECCChHhcC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence 88887 78999999999996654 789999999999999999999865
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=130.17 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~ 273 (636)
.....+.+.+.+...+ .+|||||||+|.++..++++ +..++++ |+++.+++.|+++ + ..+.+...|.
T Consensus 29 ~~~~~~~~~~~~~~~~---~~vLdiG~G~G~~~~~l~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 102 (219)
T 3dlc_A 29 YPIIAENIINRFGITA---GTCIDIGSGPGALSIALAKQSDFSIRAL---DFSKHMNEIALKNIADANLNDRIQIVQGDV 102 (219)
T ss_dssp HHHHHHHHHHHHCCCE---EEEEEETCTTSHHHHHHHHHSEEEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECBT
T ss_pred cHHHHHHHHHhcCCCC---CEEEEECCCCCHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHhccccCceEEEEcCH
Confidence 3445556666654332 28999999999999999987 5455555 8899999888765 3 3588999999
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccc----------cccCCCCch--hhhHH
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES----------HWKGWNRTT--EDLKS 341 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~----------~~~~W~~t~--e~l~~ 341 (636)
..+++++++||+|+++.+++|+ .++..+++++.++|||||++++..+...... ....|.... .....
T Consensus 103 ~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T 3dlc_A 103 HNIPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQE 181 (219)
T ss_dssp TBCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHH
T ss_pred HHCCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccC
Confidence 9999999999999999999666 6889999999999999999999864222100 000111100 00111
Q ss_pred HHHHHHHHHHHhceEeec
Q 006662 342 EQNGIETIARSLCWKKLI 359 (636)
Q Consensus 342 ~~~~ie~la~~l~Wk~v~ 359 (636)
..+.+.++++..+|+.+.
T Consensus 182 ~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 182 NVERFQNVLDEIGISSYE 199 (219)
T ss_dssp HHHHHHHHHHHHTCSSEE
T ss_pred CHHHHHHHHHHcCCCeEE
Confidence 336678888888887553
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-14 Score=139.04 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=105.7
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
..+..+.+.+...+ ..+|||||||+|.++..+++++ ..++.+ |+++.+++.++++. ..+.+...+...+++
T Consensus 80 ~~~~~~l~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 154 (254)
T 1xtp_A 80 EGSRNFIASLPGHG--TSRALDCGAGIGRITKNLLTKLYATTDLL---EPVKHMLEEAKRELAGMPVGKFILASMETATL 154 (254)
T ss_dssp HHHHHHHHTSTTCC--CSEEEEETCTTTHHHHHTHHHHCSEEEEE---ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC
T ss_pred HHHHHHHHhhcccC--CCEEEEECCCcCHHHHHHHHhhcCEEEEE---eCCHHHHHHHHHHhccCCceEEEEccHHHCCC
Confidence 34444555544333 3499999999999999998874 345555 88999999998775 357888889988999
Q ss_pred CCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEe
Q 006662 279 PSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~ 357 (636)
++++||+|++..+++|+.. +...+++++.++|||||++++..+.......... ..........+.+.++++..+|+.
T Consensus 155 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD--KEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE--TTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec--ccCCcccCCHHHHHHHHHHCCCEE
Confidence 8899999999999977753 4589999999999999999998742211110000 000111123455777888888876
Q ss_pred ec
Q 006662 358 LI 359 (636)
Q Consensus 358 v~ 359 (636)
+.
T Consensus 233 ~~ 234 (254)
T 1xtp_A 233 VK 234 (254)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=132.24 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCC----------CeEEE
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV----------PALIG 269 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~----------~~~~~ 269 (636)
....+.+.+.+...++. +|||||||+|.++..+++++ ..++++ |+++.+++.|+++.. .+.+.
T Consensus 15 ~~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNAK--KVIDLGCGEGNLLSLLLKDKSFEQITGV---DVSYSVLERAKDRLKIDRLPEMQRKRISLF 89 (219)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEEETCTTCHHHHHHHTSTTCCEEEEE---ESCHHHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred HHHHHHHHHHHhhcCCC--EEEEecCCCCHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHHHhhccccccCcceEEE
Confidence 44455666666544444 99999999999999999875 566677 889999999876521 67888
Q ss_pred EeccccCCCCCCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeCCCCccccccC------------CCCc
Q 006662 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG------------WNRT 335 (636)
Q Consensus 270 ~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~------------W~~t 335 (636)
..|...+++++++||+|+|..+++|+. ++ ..+++++.++|||||+++.... ..+...+.. +.-+
T Consensus 90 ~~d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3jwg_A 90 QSSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPN-KEYNFHYGNLFEGNLRHRDHRFEWT 167 (219)
T ss_dssp ECCSSSCCGGGTTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEB-GGGGGCCCCT-----GGGCCTTSBC
T ss_pred eCcccccccccCCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccc-hhhhhhhcccCcccccccCceeeec
Confidence 888888888788999999999997774 44 6899999999999996655432 222111100 0012
Q ss_pred hhhhHHHHHHHHHHHHHhceEeecc-----------cccEEEEeCCCC
Q 006662 336 TEDLKSEQNGIETIARSLCWKKLIQ-----------KKDLAIWQKPTN 372 (636)
Q Consensus 336 ~e~l~~~~~~ie~la~~l~Wk~v~~-----------~~~~aIWqKp~~ 372 (636)
.++ ..+.++++++..+|+.... ..+++|+.|-..
T Consensus 168 ~~~---l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~~ 212 (219)
T 3jwg_A 168 RKE---FQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLGAG 212 (219)
T ss_dssp HHH---HHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEECC-
T ss_pred HHH---HHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEeccCC
Confidence 222 2233557888889976532 223678877653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=134.76 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=90.0
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEE
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.++++.. .+.+..+|...++++ ++||+|
T Consensus 37 ~l~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v 110 (220)
T 3hnr_A 37 ILEDVVNKSFG--NVLEFGVGTGNLTNKLLLAGRTVYGI---EPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTI 110 (220)
T ss_dssp HHHHHHHTCCS--EEEEECCTTSHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEE
T ss_pred HHHHhhccCCC--eEEEeCCCCCHHHHHHHhCCCeEEEE---eCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEE
Confidence 33344334444 89999999999999999998877777 999999999988765 678888899999888 999999
Q ss_pred EecccccccccChHH--HHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQYDGL--YLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~--~L~el~RvLKPGG~Liis~p 321 (636)
++..+++|+. ++.. +++++.++|||||++++..+
T Consensus 111 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 111 VSTYAFHHLT-DDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EECcchhcCC-hHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999996664 5555 99999999999999999975
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=128.32 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=99.3
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEec
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
+.+...++. +|||+|||+|.++..+++.+..++++ |+++.+++.++++...+.+...+ +++++++||+|+++
T Consensus 11 ~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 11 PNIFEGKKG--VIVDYGCGNGFYCKYLLEFATKLYCI---DINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFA 82 (170)
T ss_dssp HHHHSSCCE--EEEEETCTTCTTHHHHHTTEEEEEEE---CSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEE
T ss_pred HhcCcCCCC--eEEEECCCCCHHHHHHHhhcCeEEEE---eCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEc
Confidence 334444444 89999999999999999986455566 99999999998886678888777 77888999999999
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
.+++|+ +++..+++++.++|||||++++..+........ .. .......+++.++++ +|+.+.
T Consensus 83 ~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~l~--Gf~~~~ 144 (170)
T 3i9f_A 83 NSFHDM-DDKQHVISEVKRILKDDGRVIIIDWRKENTGIG----PP-LSIRMDEKDYMGWFS--NFVVEK 144 (170)
T ss_dssp SCSTTC-SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----SC-GGGCCCHHHHHHHTT--TEEEEE
T ss_pred cchhcc-cCHHHHHHHHHHhcCCCCEEEEEEcCccccccC----ch-HhhhcCHHHHHHHHh--CcEEEE
Confidence 999666 588999999999999999999986532211111 11 111122345666666 887765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=132.53 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=99.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC------CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV------PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~------~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
.+|||||||+|.++..|++.+..++++ |+++.+++.|+++.. .+.+..+|...++ ++++||+|+++.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGL---DISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEE---CSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEE---ECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 489999999999999999988777777 999999999987643 3788888888876 456999999999996
Q ss_pred cccc-ChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 294 PWGQ-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 294 h~~~-d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
++.. +...++.++.++|||||++++...+.........|.. ..+.+.++++..+|+.+.
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKV-------DVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCC-------CHHHHHHHHGGGTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccC-------CHHHHHHHHHHcCCeEEE
Confidence 6643 4488999999999999999998764432221112222 234577788888887654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=138.67 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCCCCCCCee
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYPSRAFD 284 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lpf~~~sFD 284 (636)
.++. +|||||||+|.++..|+++ +..++++ |+|+.|++.|+++ + .++.+..+|...+|++ .||
T Consensus 69 ~~~~--~vLDlGcGtG~~~~~la~~~~~~~~~v~gv---D~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d 141 (261)
T 4gek_A 69 QPGT--QVYDLGCSLGAATLSVRRNIHHDNCKIIAI---DNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NAS 141 (261)
T ss_dssp CTTC--EEEEETCTTTHHHHHHHHTCCSSSCEEEEE---ESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEE
T ss_pred CCCC--EEEEEeCCCCHHHHHHHHhcCCCCCEEEEE---ECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccc
Confidence 4454 9999999999999999876 5567777 9999999999865 2 3578899998888775 599
Q ss_pred EEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+++.+++++.+.. ..+|++++|+|||||.|+++.+
T Consensus 142 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 142 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 999999996554222 5789999999999999999864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=135.52 Aligned_cols=116 Identities=25% Similarity=0.434 Sum_probs=95.9
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEec
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMA 272 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d 272 (636)
......+.+.+.++..++. +|||||||+|.++..++++ +..++++ |+++.+++.++++ +. .+.+...|
T Consensus 45 ~~~~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d 119 (273)
T 3bus_A 45 ATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTGI---SISRPQVNQANARATAAGLANRVTFSYAD 119 (273)
T ss_dssp HHHHHHHHHHHHSCCCTTC--EEEEESCTTSHHHHHHHHHSCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHhcCCCcceEEEECc
Confidence 3455566666666655555 9999999999999999985 6667777 8899998888754 33 48889999
Q ss_pred cccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+|+++++||+|++..+++|+ +++..+++++.++|||||++++..+
T Consensus 120 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 120 AMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999999999999999665 5789999999999999999999864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-13 Score=135.27 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=83.9
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----------------------CCeEEEEeccccCC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----------------------VPALIGVMASIRLP 277 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----------------------~~~~~~~~d~~~Lp 277 (636)
.+|||+|||+|..+.+|+++|..++++ |+|+.+++.|+++. .++.+.++|...++
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGHTVVGV---EISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCEEEEE---CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCCeEEEE---ECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 489999999999999999999888888 99999999986542 46789999999988
Q ss_pred CCC-CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 278 YPS-RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 f~~-~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+++ ++||+|++..+++++.... ..+++++.|+|||||+|++.+
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 764 8999999998887765433 679999999999999997553
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=132.75 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
......+.+.+. +.++ .+|||||||+|.++..+++.+ ..++++ |+++.+++.|+++ +. .+.+...|.
T Consensus 31 ~~~~~~~l~~l~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTEK--SLIADIGCGTGGQTMVLAGHVTGQVTGL---DFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp HHHHHHHHTTCCCCCTT--CEEEEETCTTCHHHHHHHTTCSSEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhcccCCCC--CEEEEeCCCCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 444555666665 3334 499999999999999999984 466777 8899999888755 33 489999999
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+|+++++||+|++..+++|+ ++..+++++.++|||||++++..+
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999999999999999666 789999999999999999999875
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=134.03 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=93.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPY 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf 278 (636)
....+.+.+...++. +|||||||+|.++..+++.+..++++ |+++.+++.++++ + .++.+...+...+|+
T Consensus 9 ~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 83 (239)
T 1xxl_A 9 SLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGV---DATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 83 (239)
T ss_dssp HHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS
T ss_pred CcchHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC
Confidence 334555666666555 99999999999999999987777777 8899998887654 3 358888999999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+|++..+++|+. ++..++.++.++|||||++++..+
T Consensus 84 ~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp CTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcEEEEEECCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999997764 889999999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=135.84 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=91.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEE
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
.+.+.+...++. +|||||||+|.++..+++.+..++++ |+++.+++.++++..++.+..+|...+|+ +++||+|
T Consensus 48 ~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v 121 (279)
T 3ccf_A 48 DLLQLLNPQPGE--FILDLGCGTGQLTEKIAQSGAEVLGT---DNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAV 121 (279)
T ss_dssp HHHHHHCCCTTC--EEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEE
T ss_pred HHHHHhCCCCCC--EEEEecCCCCHHHHHHHhCCCeEEEE---ECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEE
Confidence 344555444444 99999999999999999987777777 99999999998887678888899988887 5799999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++..++++ ..++..++.++.|+|||||++++..+
T Consensus 122 ~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 122 FSNAMLHW-VKEPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhh-CcCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999954 45889999999999999999999865
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=131.96 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=98.9
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc-C
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ-Y 298 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~-d 298 (636)
.+|||||||+|.++..+++.+..++++ |+++.+++.++++. .+.+..++...++ ++++||+|+++.+++|+.. +
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~ 119 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDE 119 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHH
T ss_pred CcEEEECCCCCHHHHHHHHcCCeEEEE---CCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHH
Confidence 489999999999999999998877777 99999999998763 3456677888888 7889999999999977652 4
Q ss_pred hHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhc-eEeec
Q 006662 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC-WKKLI 359 (636)
Q Consensus 299 ~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~-Wk~v~ 359 (636)
...+++++.++|||||++++..+......... +... ......+.+.++++..+ |+.+.
T Consensus 120 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 120 LADVLKLIWRALKPGGLFYASYKSGEGEGRDK-LARY--YNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-TSCE--ECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-cchh--ccCCCHHHHHHHHHhCCCcEEEE
Confidence 47899999999999999999975433221110 0000 00113455777888888 87654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-13 Score=134.61 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=92.8
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~s 282 (636)
...+.+.+...++ .+|||||||+|.++..++++ +..++++ |+++.+++.++++..++.+...|...++ ++++
T Consensus 22 ~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~ 95 (259)
T 2p35_A 22 ARDLLAQVPLERV--LNGYDLGCGPGNSTELLTDRYGVNVITGI---DSDDDMLEKAADRLPNTNFGKADLATWK-PAQK 95 (259)
T ss_dssp HHHHHTTCCCSCC--SSEEEETCTTTHHHHHHHHHHCTTSEEEE---ESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSC
T ss_pred HHHHHHhcCCCCC--CEEEEecCcCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCCCcEEEECChhhcC-ccCC
Confidence 3455555544444 48999999999999999987 6666677 8899999999888777899999998888 7889
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||+|+++.++++ .+++..++.++.++|||||++++..+
T Consensus 96 fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 96 ADLLYANAVFQW-VPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEEEEESCGGG-STTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCEEEEeCchhh-CCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 999999999954 46889999999999999999999975
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-13 Score=133.33 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=86.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
..+|||||||+|.++..+++.+..++++ |+++.+++.++++ ..++.+...|...+++++++||+|++..++++
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIAL---DADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEE---ESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 3499999999999999999988777777 9999999999876 35688999999999998999999999999955
Q ss_pred cccChHHHHHHHHhcccCCcEEEEE
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.+++..++.++.++|||||++++.
T Consensus 117 -~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 -VPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -CTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHHCCCCcEEEEE
Confidence 458899999999999999999998
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=136.10 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=92.2
Q ss_pred HHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
.+.+.+.+. ..++. +|||||||+|.++..++++ +..++++ |+++.+++.|+++ +. .+.+..+|...+
T Consensus 105 ~~~l~~~l~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 179 (312)
T 3vc1_A 105 AEFLMDHLGQAGPDD--TLVDAGCGRGGSMVMAHRRFGSRVEGV---TLSAAQADFGNRRARELRIDDHVRSRVCNMLDT 179 (312)
T ss_dssp HHHHHTTSCCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHhccCCCCC--EEEEecCCCCHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCceEEEECChhcC
Confidence 344556555 44444 9999999999999999998 7777777 8899999888754 33 488999999999
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+++++||+|++..+++|+ +...+++++.++|||||++++..+
T Consensus 180 ~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 180 PFDKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CCCTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999999999666 489999999999999999999864
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=136.67 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~ 281 (636)
....+.+.+.++..++. +|||||||+|.++..+++.+..++++ |+++.+++.++++. ++.+.+.|...+|++++
T Consensus 20 ~~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 20 IRIVNAIINLLNLPKGS--VIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHP-QVEWFTGYAENLALPDK 93 (261)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEETCTTSHHHHHHHTTTCEEEEE---CSCHHHHHSSCCCT-TEEEECCCTTSCCSCTT
T ss_pred HHHHHHHHHHhCCCCCC--EEEEEcCcccHHHHHHHhCCCEEEEE---eCCHHHHHHHHhcc-CCEEEECchhhCCCCCC
Confidence 34666777777655544 99999999999999999988888888 99999998886655 78999999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|++..+++|+ .++..+++++.|+|| ||++++..+
T Consensus 94 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 94 SVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp CBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 99999999999776 688999999999999 998888764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=129.33 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp 277 (636)
+...+.+.+++........+|||||||+|.++..+++.+..++++ |+++.+++.++++ +..+.+...|...++
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 97 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAV---DLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEE---CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEE---ECCHHHHHHHHHHHhhcCCCeEEEecccccCC
Confidence 445556666665432234599999999999999999998777777 8999999888755 336788888988888
Q ss_pred CCCCCeeEEEecc-cccccc--cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSR-CLIPWG--QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~-~L~h~~--~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ ++||+|++.. +++|+. .+...+++++.++|||||++++..+
T Consensus 98 ~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 98 IN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 77 8899999998 997763 3458899999999999999999754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=129.79 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCC---CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~---~~~~~~~d~~~L 276 (636)
+...+.+.+++.. .....+|||||||+|.++..+++. +..++++ |+++.+++.|+++.. .+.+...|...+
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLV---DMSEKMLEIAKNRFRGNLKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHTCSCTTEEEEESCTTTC
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHhhccCCCEEEEeCchhcc
Confidence 4444566666652 223459999999999999999998 6677777 999999999987643 688899999998
Q ss_pred CCCCCCeeEEEecccccccccChH--HHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDG--LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~--~~L~el~RvLKPGG~Liis~p 321 (636)
+++ ++||+|++..+++|+. ++. .+++++.|+|||||++++..+
T Consensus 105 ~~~-~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 105 DFE-EKYDMVVSALSIHHLE-DEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp CCC-SCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC-CCceEEEEeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 887 8999999999997764 443 699999999999999999864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-13 Score=126.31 Aligned_cols=108 Identities=16% Similarity=0.274 Sum_probs=87.6
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRA 282 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+...++. +|||+|||+|.++..+++.+..++++ |+++.+++.++++ +. ++.+...|...+++ +++
T Consensus 24 l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 97 (199)
T 2xvm_A 24 VLEAVKVVKPG--KTLDLGCGNGRNSLYLAANGYDVDAW---DKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ 97 (199)
T ss_dssp HHHHTTTSCSC--EEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred HHHHhhccCCC--eEEEEcCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence 44445444444 99999999999999999998777777 8898888887653 33 68888899888888 789
Q ss_pred eeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||+|++..+++|+.. +...++.++.++|||||++++..+
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 999999999976643 458899999999999999888653
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=129.65 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCC----------CeEEE
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV----------PALIG 269 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~----------~~~~~ 269 (636)
....+.+.+.+...++. +|||||||+|.++..+++++ ..++++ |+++.+++.|+++.. .+.+.
T Consensus 15 ~~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNAR--RVIDLGCGQGNLLKILLKDSFFEQITGV---DVSYRSLEIAQERLDRLRLPRNQWERLQLI 89 (217)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEEETCTTCHHHHHHHHCTTCSEEEEE---ESCHHHHHHHHHHHTTCCCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhcCCC--EEEEeCCCCCHHHHHHHhhCCCCEEEEE---ECCHHHHHHHHHHHHHhcCCcccCcceEEE
Confidence 34455666666555544 99999999999999999875 466677 889999999876621 57888
Q ss_pred EeccccCCCCCCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEe
Q 006662 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 270 ~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~ 320 (636)
..|...++.+.++||+|+++.+++|+. ++ ..+++++.++|||||++++..
T Consensus 90 ~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 90 QGALTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ECCTTSCCGGGCSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eCCcccccccCCCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 888877777778999999999997774 44 789999999999999777664
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=137.98 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEec
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMA 272 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d 272 (636)
..+.+.+.+.+...++. +|||||||+|.++..|++.+..++++ |+++.+++.|+++. ..+.+...+
T Consensus 43 ~~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGFSVTSV---DASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEETTCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhcccCCC--EEEEecCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 55666677777655544 89999999999999999998877777 99999999887541 346778888
Q ss_pred cccCC---CCCCCeeEEEec-ccccccccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLP---YPSRAFDMAHCS-RCLIPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lp---f~~~sFDlV~~s-~~L~h~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
...++ +++++||+|+|. .+++|+. + ...+++++.++|||||+|++..+
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 88877 888999999998 7886765 5 68999999999999999999976
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-13 Score=133.59 Aligned_cols=99 Identities=25% Similarity=0.408 Sum_probs=87.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d 298 (636)
..+|||||||+|.++..+++.+..++++ |+++.+++.++++.... +...+...+++++++||+|++..++.|+..+
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCCeEEEE---eCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 3489999999999999999998777777 99999999998876533 7778888899989999999999888788778
Q ss_pred hHHHHHHHHhcccCCcEEEEEeC
Q 006662 299 DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 299 ~~~~L~el~RvLKPGG~Liis~p 321 (636)
+..+++++.++|||||.+++..+
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEeC
Confidence 89999999999999999999876
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-12 Score=120.46 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=97.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEec-ccccccc-c
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCS-RCLIPWG-Q 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s-~~L~h~~-~ 297 (636)
.+|||+|||+|.++..+++.+..++++ |+++.+++.++++..++.+...+...+++++++||+|+++ .++++.. +
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~ 124 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGHDVLGT---DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAED 124 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHHCCCcEEEE---cCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChH
Confidence 389999999999999999998777777 8999999999988777888889988888888999999998 5664443 2
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 298 YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+...++.++.++|+|||.+++..+.... .....+.++++..+|+.+.
T Consensus 125 ~~~~~l~~~~~~l~~~G~l~~~~~~~~~---------------~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 125 GREPALANIHRALGADGRAVIGFGAGRG---------------WVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEETTSS---------------CCHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCC---------------cCHHHHHHHHHHcCCEEee
Confidence 2378999999999999999998652210 1133466677777887653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-13 Score=133.36 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
......+.+.+. +.++. +|||||||+|.++..+++... .++++ |+++.+++.++++ +. .+.+...|.
T Consensus 31 ~~~~~~~l~~l~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 105 (257)
T 3f4k_A 31 PEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI---DLFPDFIEIFNENAVKANCADRVKGITGSM 105 (257)
T ss_dssp HHHHHHHHTTSCCCCTTC--EEEEETCTTSHHHHHHHHHCCSEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCC--eEEEeCCCCCHHHHHHHHhCCCeEEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 444555666553 34444 999999999999999999853 66666 8899999887654 33 288999999
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+|+++++||+|++..+++|+ ++..+++++.++|||||++++..+
T Consensus 106 ~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 106 DNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp TSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999666 688999999999999999999975
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-13 Score=133.10 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=85.5
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc-cccccc--
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR-CLIPWG-- 296 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~-~L~h~~-- 296 (636)
.+|||||||+|.++..+++++..++++ |+++.+++.|+++...+.+..+|...+++ +++||+|+|.. +++|+.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFGTVEGL---ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHH
T ss_pred CcEEEeCCcCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCH
Confidence 489999999999999999998777777 99999999999887788999999988887 78999999998 886664
Q ss_pred cChHHHHHHHHhcccCCcEEEEEe
Q 006662 297 QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 297 ~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+...+++++.++|||||+|++..
T Consensus 128 ~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 128 AELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 244689999999999999999974
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=129.21 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=92.4
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCC--CeEEEEeccccCCCCCCCe
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~--~~~~~~~d~~~Lpf~~~sF 283 (636)
.+.++++..++. +|||||||+|.++..+++++. .++++ |+++.+++.++++.. .+.+...|...+++++++|
T Consensus 34 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVGGL--RIVDLGCGFGWFCRWAHEHGASYVLGL---DLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCTTC--EEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccCCC--EEEEEcCcCCHHHHHHHHCCCCeEEEE---cCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence 455555544444 999999999999999999877 77777 899999999987753 4788888998888888999
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|++..+++|+ +++..+++++.++|||||+++++.+
T Consensus 109 D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 109 DLAYSSLALHYV-EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEecccccc-chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999999666 5889999999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-13 Score=132.23 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=98.6
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHcCC-----CeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERGV-----PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~erg~-----~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
..+|||||||+|.++..+++++ ..++++ |+++.+++.|+++.. .+.+...+...+++++++||+|++..++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMV---DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEE---ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 4599999999999999998874 356666 889999999987642 3678888888888888899999999999
Q ss_pred cccccCh--HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 293 IPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 293 ~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+|+. ++ ..+++++.++|||||++++..+...... .|...........+++.++++..+|+.+.
T Consensus 157 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 157 GHLT-DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV---ILDDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE---EEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc---eecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 7765 43 4899999999999999999865221100 01111111111345677788888887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=126.70 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=102.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC---CCCC-CC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPS-RA 282 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L---pf~~-~s 282 (636)
.+.+.+....+ .+|||||||+|.++..+++.+..++++ |+++.+++.++++ ....+...+...+ ++.. ++
T Consensus 43 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 43 AILLAILGRQP--ERVLDLGCGEGWLLRALADRGIEAVGV---DGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHHHHHHTCC--SEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCC
T ss_pred HHHHHhhcCCC--CEEEEeCCCCCHHHHHHHHCCCEEEEE---cCCHHHHHHHHHh-cccccchhhHHhhcccccccCCC
Confidence 44444444444 499999999999999999998877777 9999999999887 4456666666655 5544 45
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCcccc---ccC-----CCCc------hhhhHHHHHHHHH
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH---WKG-----WNRT------TEDLKSEQNGIET 348 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~---~~~-----W~~t------~e~l~~~~~~ie~ 348 (636)
||+|+++.+++ ..++..+++++.++|||||++++..+....... ... |... ........+++.+
T Consensus 117 fD~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (227)
T 3e8s_A 117 YDLICANFALL--HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN 194 (227)
T ss_dssp EEEEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHH
T ss_pred ccEEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHH
Confidence 99999999995 568899999999999999999999763221110 000 1110 0001113456778
Q ss_pred HHHHhceEeec
Q 006662 349 IARSLCWKKLI 359 (636)
Q Consensus 349 la~~l~Wk~v~ 359 (636)
+++..+|+.+.
T Consensus 195 ~l~~aGf~~~~ 205 (227)
T 3e8s_A 195 ALDMAGLRLVS 205 (227)
T ss_dssp HHHHTTEEEEE
T ss_pred HHHHcCCeEEE
Confidence 88899997764
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=125.92 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=102.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc--CCCCCCCee
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR--LPYPSRAFD 284 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~--Lpf~~~sFD 284 (636)
.+.+.++ . ...+|||+|||+|.++..+++.+..++++ |+++.+++.++++.. .+...+... +++++++||
T Consensus 24 ~l~~~~~-~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~~---D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 24 NLLKHIK-K--EWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp HHHTTCC-T--TCSEEEEETCTTSHHHHHHHTTTCEEEEE---ESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHhc-c--CCCcEEEeCCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccC
Confidence 3445544 2 33499999999999999999987766677 999999999987653 566677665 677788999
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccc-----cccCCCCc-------hhhhHHHHHHHHHHHHH
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES-----HWKGWNRT-------TEDLKSEQNGIETIARS 352 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~-----~~~~W~~t-------~e~l~~~~~~ie~la~~ 352 (636)
+|++..+++|+. ++..++.++.++|+|||+++++.|...... ....|... ........+++.++++.
T Consensus 96 ~v~~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (230)
T 3cc8_A 96 CVIFGDVLEHLF-DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLK 174 (230)
T ss_dssp EEEEESCGGGSS-CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHH
T ss_pred EEEECChhhhcC-CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHH
Confidence 999999996664 789999999999999999999976432110 00111110 00011234567788888
Q ss_pred hceEeec
Q 006662 353 LCWKKLI 359 (636)
Q Consensus 353 l~Wk~v~ 359 (636)
.+|+.+.
T Consensus 175 ~Gf~~~~ 181 (230)
T 3cc8_A 175 AGYSISK 181 (230)
T ss_dssp TTEEEEE
T ss_pred cCCeEEE
Confidence 8887654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-13 Score=127.97 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=91.1
Q ss_pred HHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-CCeEEEEeccccCCCCCCCe
Q 006662 206 DDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 206 d~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-~~~~~~~~d~~~Lpf~~~sF 283 (636)
..+.+.+. ..++. +|||||||+|.++..+++++..++++ |+++.+++.+++.+ .++.+...|...+ +++++|
T Consensus 35 ~~~~~~l~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 35 PAALERLRAGNIRG--DVLELASGTGYWTRHLSGLADRVTAL---DGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HHHHHHHTTTTSCS--EEEEESCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCE
T ss_pred HHHHHHHhcCCCCC--eEEEECCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHhcCCCCeEEEecccccC-CCCCce
Confidence 34444444 33333 99999999999999999998877777 99999999998876 5688999998887 788999
Q ss_pred eEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|+++.+++|+. ++ ..+++++.++|||||.+++..+
T Consensus 109 D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 109 DAVFFAHWLAHVP-DDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp EEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEechhhcCC-HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999997765 44 7899999999999999999865
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=134.33 Aligned_cols=99 Identities=18% Similarity=0.071 Sum_probs=86.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC-CCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP-YPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~ 291 (636)
..+|||||||+|.++..+++.+..++++ |+++.+++.|+++ + ..+.+..+|...++ +++++||+|++..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILC---DLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4589999999999999999998877777 8899999988765 3 34788889998887 78899999999999
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++|+ +++..+++++.++|||||++++..+
T Consensus 146 l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWV-ADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhcc-cCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9665 5889999999999999999999865
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-14 Score=151.02 Aligned_cols=153 Identities=11% Similarity=0.104 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEE---EEeccccCC
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALI---GVMASIRLP 277 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~---~~~d~~~Lp 277 (636)
...+.+.+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.|++++.+... ...+...++
T Consensus 92 ~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~l~~~g~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 92 FAMLARDFLATELTGPDP--FIVEIGCNDGIMLRTIQEAGVRHLGF---EPSSGVAAKAREKGIRVRTDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHHHHTTTCSSSC--EEEEETCTTTTTHHHHHHTTCEEEEE---CCCHHHHHHHHTTTCCEECSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCC--EEEEecCCCCHHHHHHHHcCCcEEEE---CCCHHHHHHHHHcCCCcceeeechhhHhhcc
Confidence 344556666666544444 99999999999999999998888888 9999999999988655432 223445566
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCc--hhhhHHHHHHHHHHHHHhce
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRT--TEDLKSEQNGIETIARSLCW 355 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t--~e~l~~~~~~ie~la~~l~W 355 (636)
+++++||+|++..+++|+. ++..+++++.|+|||||++++..+..........|... ........+.++.+++..+|
T Consensus 167 ~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp HHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTE
T ss_pred cCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCC
Confidence 7789999999999997775 89999999999999999999987632110000000000 00011234567888888998
Q ss_pred Eeec
Q 006662 356 KKLI 359 (636)
Q Consensus 356 k~v~ 359 (636)
+.+.
T Consensus 246 ~~~~ 249 (416)
T 4e2x_A 246 ELVD 249 (416)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=126.77 Aligned_cols=97 Identities=25% Similarity=0.304 Sum_probs=85.0
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
...+|||||||+|.++..+ +. .++++ |+++.+++.++++...+.+...+...+|+++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGV---EPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEE---CCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC-
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEE---eCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc-
Confidence 3449999999999999888 55 56666 8999999999888767788888998999999999999999999665
Q ss_pred cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++..+++++.++|||||.++++.+
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 4889999999999999999999976
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=127.75 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=88.8
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~~s 282 (636)
..+...+...+ ..+|||||||+|.++..+++.+..++++ |+++.+++.++++. .++.+...|...++ ++++
T Consensus 41 ~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~ 114 (216)
T 3ofk_A 41 QLLRLSLSSGA--VSNGLEIGCAAGAFTEKLAPHCKRLTVI---DVMPRAIGRACQRTKRWSHISWAATDILQFS-TAEL 114 (216)
T ss_dssp HHHHHHTTTSS--EEEEEEECCTTSHHHHHHGGGEEEEEEE---ESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCC
T ss_pred HHHHHHcccCC--CCcEEEEcCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCC
Confidence 33444443333 4489999999999999999987666666 99999999998764 35788999988888 6789
Q ss_pred eeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeCC
Q 006662 283 FDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p~ 322 (636)
||+|+++.+++|+. ++ ..++.++.++|||||+++++.+.
T Consensus 115 fD~v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 115 FDLIVVAEVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEEEESCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccEEEEccHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999999996665 54 57899999999999999998763
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=132.07 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~ 274 (636)
...++.+.+.+...++. +|||||||+|.++..+++ .+..++++ |+++.+++.++++ + ..+.+...|..
T Consensus 50 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gv---d~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 50 IAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGL---TLSKNQANHVQQLVANSENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 34455566665555554 999999999999999995 47777777 8899999988765 2 25788888887
Q ss_pred cCCCCCCCeeEEEecccccccc-cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~-~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+| ++||+|++..+++|+. .+...+++++.|+|||||++++..+
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 765 7899999999998875 3668999999999999999999865
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=130.30 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=85.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
..+|||||||+|.++..+++. +..++++ |+++.+++.++++ + .++.+...|...+++++++||+|++..+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSI---DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 349999999999999999988 5677777 8899998888754 3 3588899999999999999999999999
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++|+ +++..++.++.++|||||++++..+
T Consensus 115 l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 115 LEHL-QSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhc-CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9665 5888999999999999999999875
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=133.49 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh---cCCEEEEcCcCCchHHHHHHHHHc-------CCCeEEEEe
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS---RNILAVSFAPRDTHEAQVQFALER-------GVPALIGVM 271 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~---~~v~vv~i~p~Dis~a~l~~A~er-------g~~~~~~~~ 271 (636)
..+.+.+.+++. . ...+|||||||+|.++..|++ .+..++++ |+++.+++.|+++ ..++.+.++
T Consensus 23 ~~~~~~l~~~~~-~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 96 (299)
T 3g5t_A 23 SDFYKMIDEYHD-G--ERKLLVDVGCGPGTATLQMAQELKPFEQIIGS---DLSATMIKTAEVIKEGSPDTYKNVSFKIS 96 (299)
T ss_dssp HHHHHHHHHHCC-S--CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEE---ESCHHHHHHHHHHHHHCC-CCTTEEEEEC
T ss_pred HHHHHHHHHHhc-C--CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEE---eCCHHHHHHHHHHHHhccCCCCceEEEEc
Confidence 445556665543 2 344999999999999999994 56677777 8999999988765 457899999
Q ss_pred ccccCCCCC------CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 272 ASIRLPYPS------RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 272 d~~~Lpf~~------~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|...+++++ ++||+|+++.+++|+ ++..++.++.++|||||+|++..
T Consensus 97 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 97 SSDDFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp CTTCCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHhCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 999988877 899999999999555 88999999999999999999953
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-12 Score=119.66 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=90.6
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCC---eEEEE
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVP---ALIGV 270 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~---~~~~~ 270 (636)
+...+...+.+.+.+...++. +|||+|||+|.++..+++.+..++++ |+++.+++.++++ +.+ +.+..
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~~--~vLdiG~G~G~~~~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (194)
T 1dus_A 34 YGKVDKGTKILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTMA---DINRRAIKLAKENIKLNNLDNYDIRVVH 108 (194)
T ss_dssp TTSCCHHHHHHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred ccccchHHHHHHHHcccCCCC--eEEEeCCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 333334556677777655444 99999999999999999987766777 8898988888754 333 78888
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.|... ++++++||+|+++..+++...+...+++++.++|+|||.+++..+
T Consensus 109 ~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 109 SDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 77765 455778999999887743233457899999999999999999975
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=125.43 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=83.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
..+|||+|||+|.++..+++.+..++++ |+++.+++.++++ +..+.+...|...+++++++||+|+++.++++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 4499999999999999999987766666 8899998888754 36688899999888888889999999988432
Q ss_pred c-ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 W-GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~-~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+ ..+...+++++.++|||||.+++..+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 2 23557899999999999999999865
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=122.17 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=82.5
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
+|||||||+|.++..+++.+..++++ |+++.+++.++++ +..+.+...|...+++++++||+|+++.. |+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAV---DQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEE---CSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEE---ECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCC
Confidence 89999999999999999998877777 8899999888765 45788888898888888899999999643 443
Q ss_pred -cChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 297 -QYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 297 -~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.+...++.++.++|||||++++..+.
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 34588999999999999999999753
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-12 Score=124.43 Aligned_cols=100 Identities=24% Similarity=0.296 Sum_probs=86.4
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC----------CeEEEEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV----------PALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~----------~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..+++.+..++++ |+++.+++.++++.. .+.+...+...+++++++||+|++.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGYSVTGI---DINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCCeEEEE---ECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 389999999999999999998877777 999999999987532 3678888998999989999999999
Q ss_pred ccccccccChH---HHHHHHHhcccCCcEEEEEeCCC
Q 006662 290 RCLIPWGQYDG---LYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 290 ~~L~h~~~d~~---~~L~el~RvLKPGG~Liis~p~~ 323 (636)
.+++|+. ++. .+++++.++|||||++++..+..
T Consensus 109 ~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 109 AFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred chhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 9996664 665 89999999999999999987643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-12 Score=130.08 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
....++.+.+.+...++. +|||||||+|.++..++++ +..++++ |+++.+++.|+++ +. .+.+...|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (302)
T 3hem_A 57 QYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGL---TLSENQYAHDKAMFDEVDSPRRKEVRIQGW 131 (302)
T ss_dssp HHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ECCHHHHHHHHHHHHHSCCSSCEEEEECCG
T ss_pred HHHHHHHHHHHcCCCCcC--EEEEeeccCcHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECCH
Confidence 344555566666555555 9999999999999999998 7777777 9999999988765 33 477888887
Q ss_pred ccCCCCCCCeeEEEecccccccccCh---------HHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYD---------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~---------~~~L~el~RvLKPGG~Liis~p 321 (636)
..+ +++||+|++..+++|+. ++ ..+++++.++|||||++++...
T Consensus 132 ~~~---~~~fD~v~~~~~~~~~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 132 EEF---DEPVDRIVSLGAFEHFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GGC---CCCCSEEEEESCGGGTT-CCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred HHc---CCCccEEEEcchHHhcC-ccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 765 68999999999997774 32 7899999999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=127.91 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=80.8
Q ss_pred cEEEEeCCCCcHHHHHHhh--c-CCEEEEcCcCCchHHHHHHHHHcCC----C--eEEEEeccccCCCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMS--R-NILAVSFAPRDTHEAQVQFALERGV----P--ALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--~-~v~vv~i~p~Dis~a~l~~A~erg~----~--~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
.+|||||||+|.++..++. . +..++++ |+++.+++.|+++.. . +.+..+|...++++ ++||+|+++.
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGVQLVGI---DYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTCEEEEE---ESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCeEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 4899999999999999952 2 5566677 889999999886532 2 88999999999988 9999999999
Q ss_pred cccccccChH---HHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYDG---LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~~---~~L~el~RvLKPGG~Liis~p 321 (636)
+++|+. ++. .+++++.++|||||+++++..
T Consensus 196 ~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 196 LNIYEP-DDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp SGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 996665 554 489999999999999999863
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-12 Score=119.13 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=75.8
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC-CCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~ 293 (636)
.+|||+|||+|.++..|++++..++++ |+++.+++.|+++ + .++.+...+...++ +.+++||+|+++....
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~~v~~v---D~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSKKVYAF---DVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 499999999999999999987777777 9999999888754 3 35777776666543 5578899999874332
Q ss_pred cc--------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PW--------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~--------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+. ..+...++.++.++|||||++++...
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 12235788999999999999999864
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=131.70 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=73.4
Q ss_pred CCcEEEEeCCCCcHHHHHH----hhc--CCE--EEEcCcCCchHHHHHHHHHc-----CC-CeEE--EEeccccCC----
Q 006662 218 SIRTAIDTGCGVASWGAYL----MSR--NIL--AVSFAPRDTHEAQVQFALER-----GV-PALI--GVMASIRLP---- 277 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~L----a~~--~v~--vv~i~p~Dis~a~l~~A~er-----g~-~~~~--~~~d~~~Lp---- 277 (636)
...+|||||||+|.++..+ +.+ ++. ++++ |+|+.|++.|+++ +. ++.+ ...+...++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~v---D~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV---EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEE---CSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEE---eCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhc
Confidence 3458999999999766543 332 442 2555 8899999988765 22 2333 344444433
Q ss_pred --CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 --YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 --f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|+++.+++| .+++..+|+++.|+|||||+|++..+
T Consensus 129 ~~~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp TTTCCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCceeEEEEeeeeee-cCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 56889999999999955 46899999999999999999999854
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-12 Score=128.07 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=91.0
Q ss_pred HHHHHHHHhh-ccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 203 AYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL-~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
.+++.+.+.+ ...++ .+|||||||+|.++..+++. +..++++ |+++.+++.|+++ +.++.+.+.|..
T Consensus 8 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~v~~~~~d~~ 82 (284)
T 3gu3_A 8 DYVSFLVNTVWKITKP--VHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT 82 (284)
T ss_dssp HHHHHHHHTTSCCCSC--CEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHhccCCC--CeEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence 3444555444 33333 49999999999999999987 4667777 8899999888765 336888999998
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.++++ ++||+|++..+++|+ +++..+++++.++|||||++++..+.
T Consensus 83 ~~~~~-~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 83 EIELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TCCCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCcC-CCeeEEEECChhhcC-CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88874 699999999999655 58899999999999999999999875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=130.97 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~ 274 (636)
...++.+.+.+...++. +|||||||+|.++..+++. +..++++ |+++.+++.|+++ +. .+.+...|..
T Consensus 76 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 150 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGL---TLSKNQHARCEQVLASIDTNRSRQVLLQGWE 150 (318)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccchHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECChH
Confidence 34455566655555554 9999999999999999988 7777777 8999999988765 32 4788888887
Q ss_pred cCCCCCCCeeEEEecccccccc-cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~-~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+| ++||+|++..+++|+. ++...+++++.++|||||++++..+
T Consensus 151 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 151 DFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 765 7899999999997775 3668999999999999999999875
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=134.14 Aligned_cols=98 Identities=20% Similarity=0.161 Sum_probs=85.3
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc---------C----CCeEEEEeccccC------C
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER---------G----VPALIGVMASIRL------P 277 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er---------g----~~~~~~~~d~~~L------p 277 (636)
.+|||||||+|.++..+++. +..++++ |+++.+++.|+++ | .++.+...|...+ +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGV---DMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTCEEEEE---ECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 49999999999999999885 4566777 8899999999876 4 5789999998887 8
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|+++.+++++ +++..+|+++.|+|||||+|+++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLS-TNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcC-CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999999999554 5889999999999999999999864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-12 Score=122.50 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=82.5
Q ss_pred cEEEEeCCCCcHH-HHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCGVASW-GAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCGtG~~-a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+|||+|||+|.+ ...+++.+..++++ |+++.+++.++++ +..+.+...|...+++++++||+|++..+++|
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGI---EISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTCEEEEE---ECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 4899999999987 45556667777777 8899998887654 45678888899899998899999999999977
Q ss_pred cc-cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 WG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~~-~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+. .+...+++++.++|||||++++..+
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 64 3458999999999999999999864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-12 Score=124.44 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=83.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc-cccccc-
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR-CLIPWG- 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~-~L~h~~- 296 (636)
..+|||||||+|.++..+++++..++++ |+++.+++.++++..++.+...|...+++ +++||+|+|.. +++|+.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGL---ELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEE---ESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEE---eCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 3489999999999999999987666666 89999999999887778899999888887 67899999755 775553
Q ss_pred -cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 297 -QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 -~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+...+++++.++|||||++++..+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2337899999999999999999854
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-12 Score=123.14 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=96.1
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~ 299 (636)
.+|||||||+|.++..+++. +++ |+++.+++.++++ .+.+...+...+++++++||+|++..+++|+ +++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~----~~v---D~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~ 118 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK----IGV---EPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFV-DDP 118 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC----EEE---ESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCH
T ss_pred CcEEEeCCCCCHHHHHHHHH----hcc---CCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhc-cCH
Confidence 48999999999999999887 344 7899999999887 5678888888889888999999999999665 588
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCCcc--ccc----cCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 300 GLYLIEVDRVLRPGGYWILSGPPVNWE--SHW----KGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 300 ~~~L~el~RvLKPGG~Liis~p~~~w~--~~~----~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
..++.++.++|+|||++++..+...-. ... .+............+++.++++..+|+.+.
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 999999999999999999987533210 000 000000000011345677888888887654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=126.73 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=82.8
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
.+|||+|||+|.++..+++++..++++ |+++.+++.++++ +.++.+...|...+++ +++||+|+++.+++|+
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGYDVTSW---DHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CcEEEECCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 389999999999999999998877777 8899998887654 4578899999888877 7899999999999766
Q ss_pred ccC-hHHHHHHHHhcccCCcEEEEEe
Q 006662 296 GQY-DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 296 ~~d-~~~~L~el~RvLKPGG~Liis~ 320 (636)
... ...+++++.++|||||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 433 2689999999999999988864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=122.37 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lp 277 (636)
..+.+.+.+.+ .++ .+|||+|||+|.++..+++.+. .++++ |+++.+++.++++. ..+.+...|...++
T Consensus 30 ~~~~~~l~~~~--~~~--~~vLdiGcG~G~~~~~l~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~ 102 (215)
T 2pxx_A 30 SSFRALLEPEL--RPE--DRILVLGCGNSALSYELFLGGFPNVTSV---DYSSVVVAAMQACYAHVPQLRWETMDVRKLD 102 (215)
T ss_dssp HHHHHHHGGGC--CTT--CCEEEETCTTCSHHHHHHHTTCCCEEEE---ESCHHHHHHHHHHTTTCTTCEEEECCTTSCC
T ss_pred HHHHHHHHHhc--CCC--CeEEEECCCCcHHHHHHHHcCCCcEEEE---eCCHHHHHHHHHhcccCCCcEEEEcchhcCC
Confidence 34444444443 333 4899999999999999999865 56666 88999999998764 35788889988888
Q ss_pred CCCCCeeEEEecccccccc--------------cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWG--------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~--------------~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++..++++.. .+...++.++.++|||||.+++..+
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 8889999999988775443 2347899999999999999999976
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=142.81 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=98.2
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc---------
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER--------- 262 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er--------- 262 (636)
.+.+.-....++.+.+.+...++. +|||||||+|.++..|++.+ ..++++ |+++.+++.|+++
T Consensus 700 tFsPPL~eqRle~LLelL~~~~g~--rVLDVGCGTG~lai~LAr~g~p~a~VtGV---DIS~emLe~AReRLa~~lnAkr 774 (950)
T 3htx_A 700 FFKPPLSKQRVEYALKHIRESSAS--TLVDFGCGSGSLLDSLLDYPTSLQTIIGV---DISPKGLARAAKMLHVKLNKEA 774 (950)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSCCS--EEEEETCSSSHHHHHHTSSCCCCCEEEEE---ESCHHHHHHHHHHHHHHTTTTC
T ss_pred cCCchHHHHHHHHHHHHhcccCCC--EEEEECCCCCHHHHHHHHhCCCCCeEEEE---ECCHHHHHHHHHHhhhccchhh
Confidence 334444455666677777655554 99999999999999999986 677777 9999999999762
Q ss_pred -C-CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCC
Q 006662 263 -G-VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 263 -g-~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~ 323 (636)
+ .++.+.++|...+++++++||+|++..+++|+.+.. ..+++++.|+|||| .++++.|..
T Consensus 775 ~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 775 CNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp SSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred cCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 2 358899999999999999999999999997776322 46899999999999 888887644
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=118.23 Aligned_cols=146 Identities=14% Similarity=0.037 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHHhhc--cCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCC-eEEEE
Q 006662 199 RGADAYIDDIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVP-ALIGV 270 (636)
Q Consensus 199 ~g~~~~id~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~-~~~~~ 270 (636)
.+.......+.+.+. ..++ .+|||+|||+|.++..+++.+. .++++ |+++.+++.|+++ +.. +.+..
T Consensus 41 ~~~~~~~~~~~~~l~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~ 115 (205)
T 3grz_A 41 TGNHQTTQLAMLGIERAMVKP--LTVADVGTGSGILAIAAHKLGAKSVLAT---DISDESMTAAEENAALNGIYDIALQK 115 (205)
T ss_dssp -CCHHHHHHHHHHHHHHCSSC--CEEEEETCTTSHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCCccHHHHHHHHHHhccCC--CEEEEECCCCCHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEe
Confidence 333444444555444 2333 4999999999999999998854 66666 8899999888754 433 77777
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHH
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la 350 (636)
.|... +.+++||+|+++..+++ ...+++++.++|||||+++++.... . ..+.+.+++
T Consensus 116 ~d~~~--~~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~-------------~----~~~~~~~~~ 172 (205)
T 3grz_A 116 TSLLA--DVDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFSGIDY-------------L----QLPKIEQAL 172 (205)
T ss_dssp SSTTT--TCCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEEEEEG-------------G----GHHHHHHHH
T ss_pred ccccc--cCCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEEecCc-------------c----cHHHHHHHH
Confidence 77654 44689999999877633 3688999999999999999985411 0 133466777
Q ss_pred HHhceEeeccc--cc--EEEEeCCCC
Q 006662 351 RSLCWKKLIQK--KD--LAIWQKPTN 372 (636)
Q Consensus 351 ~~l~Wk~v~~~--~~--~aIWqKp~~ 372 (636)
+..+|+.+... ++ ..+.++|.+
T Consensus 173 ~~~Gf~~~~~~~~~~w~~~~~~~~~~ 198 (205)
T 3grz_A 173 AENSFQIDLKMRAGRWIGLAISRKHE 198 (205)
T ss_dssp HHTTEEEEEEEEETTEEEEEEEECC-
T ss_pred HHcCCceEEeeccCCEEEEEEecccc
Confidence 78888776422 22 345555554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=127.81 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=85.4
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC-----
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY----- 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf----- 278 (636)
.++.+.+.+...++. +|||||||+|.++..|++++..++++ |+++.|++.|+++.... +...+...++.
T Consensus 33 ~~~~il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~V~gv---D~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 33 DRENDIFLENIVPGS--TVAVIGASTRFLIEKALERGASVTVF---DFSQRMCDDLAEALADR-CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGG
T ss_pred HHHHHHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHhc-cceeeeeecccccccc
Confidence 345566666666555 99999999999999999998887777 99999999998775332 22233333333
Q ss_pred CCCCeeEEEecccccccccC-hHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++||+|+++.+++|+..+ ...++.++.++| |||.++++.+
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 25789999999999777533 367999999999 9999999965
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=117.50 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=92.5
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er 262 (636)
|..+..+. .. +....+...+.+.+.+... .....+|||+|||+|.++..+++++. .++++ |+++.+++.|+++
T Consensus 12 g~~l~~~~-~~-~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~ 86 (189)
T 3p9n_A 12 GRRIAVPP-RG-TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFV---ESDQRSAAVIARN 86 (189)
T ss_dssp TCEEECCS-CC-C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEE---ECCHHHHHHHHHH
T ss_pred CcEecCCC-CC-CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEE---ECCHHHHHHHHHH
Confidence 33444544 22 2333455556666665431 12234899999999999998888754 56666 8899998888754
Q ss_pred ----CC-CeEEEEeccccCC--CCCCCeeEEEecccccccccChHHHHHHHHh--cccCCcEEEEEeC
Q 006662 263 ----GV-PALIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR--VLRPGGYWILSGP 321 (636)
Q Consensus 263 ----g~-~~~~~~~d~~~Lp--f~~~sFDlV~~s~~L~h~~~d~~~~L~el~R--vLKPGG~Liis~p 321 (636)
+. ++.+..+|...++ +++++||+|+++..+++..++...++.++.+ +|+|||++++..+
T Consensus 87 ~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 87 IEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 33 5788888877654 4578999999988764433456889999999 9999999999865
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-12 Score=128.67 Aligned_cols=148 Identities=11% Similarity=-0.047 Sum_probs=93.9
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC---C-----------------
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG---V----------------- 264 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg---~----------------- 264 (636)
+.+.+++......+.+|||||||+|.++..++..+. .++++ |+|+.+++.|+++. .
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~---D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~ 119 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLS---DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG 119 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEE---ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeec---cccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCC
Confidence 344444432223345899999999988888777765 35555 88999988876431 0
Q ss_pred --------------Ce-EEEEecccc-CCC---CCCCeeEEEecccccccccC---hHHHHHHHHhcccCCcEEEEEeCC
Q 006662 265 --------------PA-LIGVMASIR-LPY---PSRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 265 --------------~~-~~~~~d~~~-Lpf---~~~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.+ .+..+|... .|+ ..++||+|+++.+++|...+ ...+++++.|+|||||+|++++..
T Consensus 120 ~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 120 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp CGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred CCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 12 266777766 343 35789999999999765433 368999999999999999999641
Q ss_pred -CCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 323 -VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 323 -~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
..+... .. ..........+++.++++..+++.+.
T Consensus 200 ~~~~~~~-g~--~~~~~~~~~~~~l~~~l~~aGF~i~~ 234 (263)
T 2a14_A 200 RLPSYMV-GK--REFSCVALEKGEVEQAVLDAGFDIEQ 234 (263)
T ss_dssp SCCEEEE-TT--EEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cCcccee-CC--eEeeccccCHHHHHHHHHHCCCEEEE
Confidence 111100 00 00000111234567777777886543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-12 Score=123.78 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC----CCeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~ 275 (636)
...+.+.+.+.+. .+ ..+|||||||+|.++..+++.+. .++++ |+++.+++.|+++. .++.+..++...
T Consensus 46 ~~~~~~~l~~~~~-~~--~~~vLDiGcGtG~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 119 (236)
T 1zx0_A 46 ETPYMHALAAAAS-SK--GGRVLEVGFGMAIAASKVQEAPIDEHWII---ECNDGVFQRLRDWAPRQTHKVIPLKGLWED 119 (236)
T ss_dssp GHHHHHHHHHHHT-TT--CEEEEEECCTTSHHHHHHHTSCEEEEEEE---ECCHHHHHHHHHHGGGCSSEEEEEESCHHH
T ss_pred HHHHHHHHHhhcC-CC--CCeEEEEeccCCHHHHHHHhcCCCeEEEE---cCCHHHHHHHHHHHHhcCCCeEEEecCHHH
Confidence 3445555655542 23 34899999999999999988654 45555 99999999988653 457888888888
Q ss_pred C--CCCCCCeeEEEe-cccccccc----cChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 L--PYPSRAFDMAHC-SRCLIPWG----QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 L--pf~~~sFDlV~~-s~~L~h~~----~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ++++++||+|++ .+.+ +.. .+...+++++.|+|||||+|++..
T Consensus 120 ~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 120 VAPTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HGGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hhcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 7 899999999999 5554 221 112477999999999999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=125.37 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=98.1
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCC--C-------------------
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGV--P------------------- 265 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~--~------------------- 265 (636)
+.+++......+.+|||||||+|.++..+++.+. .++++ |+++.+++.++++.. +
T Consensus 46 l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (265)
T 2i62_A 46 LFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVS---DYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNR 122 (265)
T ss_dssp HHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEE---ESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTC
T ss_pred HHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEe---cCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccc
Confidence 3344433223345899999999999999998876 56666 889999998875521 1
Q ss_pred -------------e-EEEEeccccCC-CCC---CCeeEEEeccccccccc---ChHHHHHHHHhcccCCcEEEEEeCCC-
Q 006662 266 -------------A-LIGVMASIRLP-YPS---RAFDMAHCSRCLIPWGQ---YDGLYLIEVDRVLRPGGYWILSGPPV- 323 (636)
Q Consensus 266 -------------~-~~~~~d~~~Lp-f~~---~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKPGG~Liis~p~~- 323 (636)
+ .+..+|....+ +++ ++||+|+++.++++... +...++.++.++|||||+|++.....
T Consensus 123 ~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 202 (265)
T 2i62_A 123 MKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKS 202 (265)
T ss_dssp SCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred cchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCC
Confidence 5 77888877654 355 89999999999964433 45789999999999999999987421
Q ss_pred CccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 324 NWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 324 ~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
.+..... ..........+.+.++++..+|+.+.
T Consensus 203 ~~~~~~~---~~~~~~~~~~~~~~~~l~~aGf~~~~ 235 (265)
T 2i62_A 203 SYYMIGE---QKFSSLPLGWETVRDAVEEAGYTIEQ 235 (265)
T ss_dssp CEEEETT---EEEECCCCCHHHHHHHHHHTTCEEEE
T ss_pred ceEEcCC---ccccccccCHHHHHHHHHHCCCEEEE
Confidence 1110000 00000111234567778888887654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-12 Score=129.29 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=80.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC---------------------------------
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG--------------------------------- 263 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg--------------------------------- 263 (636)
..+|||||||+|.++..|+++ +..++++ |+++.+++.|+++.
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gv---Dis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGL---DIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEE---ESCHHHHHHHHHTC---------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 459999999999999999997 5667777 99999999997652
Q ss_pred ------------------------------CCeEEEEeccccCC-----CCCCCeeEEEecccccccc---c--ChHHHH
Q 006662 264 ------------------------------VPALIGVMASIRLP-----YPSRAFDMAHCSRCLIPWG---Q--YDGLYL 303 (636)
Q Consensus 264 ------------------------------~~~~~~~~d~~~Lp-----f~~~sFDlV~~s~~L~h~~---~--d~~~~L 303 (636)
.++.+..+|....+ +.+++||+|+|..+++++. . +...++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 24677777765443 5678999999999884432 1 337899
Q ss_pred HHHHhcccCCcEEEEEeC
Q 006662 304 IEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 304 ~el~RvLKPGG~Liis~p 321 (636)
+++.++|||||+|++...
T Consensus 204 ~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 999999999999999854
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=127.75 Aligned_cols=113 Identities=11% Similarity=0.031 Sum_probs=89.1
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC--------CCeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--------VPALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg--------~~~~~~~~d~~ 274 (636)
.....+.+.+.... .+|||||||+|.++..|++++..++++ |+++.+++.|+++. .++.+.++|..
T Consensus 70 ~~~~~~~~~~~~~~---~~vLDlGcG~G~~~~~l~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 70 SEAREFATRTGPVS---GPVLELAAGMGRLTFPFLDLGWEVTAL---ELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHCCCC---SCEEEETCTTTTTHHHHHTTTCCEEEE---ESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHHhhCCCC---CcEEEEeccCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 34455555554322 279999999999999999998777777 88999999887652 45889999999
Q ss_pred cCCCCCCCeeEEEecccccccccC--hHHHHHHHHhcccCCcEEEEEeCC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.+++ +++||+|+|...+.++.+. ...+|+++.++|||||+|++..+.
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 9887 6899999976554465532 378999999999999999999753
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=120.45 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=81.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
..+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +.++.+..+|...++++ ++||+|+|.....+
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGYEVVGL---DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 3499999999999999999998877777 8999999888754 45688889998888765 68999998754333
Q ss_pred cc--cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 WG--QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~~--~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+. .+...+++++.++|||||.+++..+
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 33 2337899999999999999999865
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=7.8e-12 Score=128.32 Aligned_cols=151 Identities=16% Similarity=0.057 Sum_probs=95.1
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCC-----------------
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV----------------- 264 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~----------------- 264 (636)
...+.+.+.+......+.+|||||||+|.+...++.. +..++++ |+++.+++.|+++..
T Consensus 56 ~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~ 132 (289)
T 2g72_A 56 WKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMT---DFLEVNRQELGRWLQEEPGAFNWSMYSQHACL 132 (289)
T ss_dssp HHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEE---CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEe---CCCHHHHHHHHHHHhhCcccccchhhhhHHHH
Confidence 3345555555433223459999999999955444442 5566777 899999988765311
Q ss_pred ------------------CeEEEEecccc-CCC-----CCCCeeEEEeccccccccc---ChHHHHHHHHhcccCCcEEE
Q 006662 265 ------------------PALIGVMASIR-LPY-----PSRAFDMAHCSRCLIPWGQ---YDGLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 265 ------------------~~~~~~~d~~~-Lpf-----~~~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKPGG~Li 317 (636)
...+..+|... +|+ ++++||+|+|+.++++... ++..+|+++.|+|||||+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~ 212 (289)
T 2g72_A 133 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 212 (289)
T ss_dssp HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 02355557766 664 3467999999999966433 46899999999999999999
Q ss_pred EEeC-CCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 318 LSGP-PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 318 is~p-~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+... ...|..... ..........+.+.++++..+|+.+.
T Consensus 213 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 213 LIGALEESWYLAGE---ARLTVVPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp EEEEESCCEEEETT---EEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEEecCcceEEcCC---eeeeeccCCHHHHHHHHHHcCCeEEE
Confidence 9852 111111000 00000111234577778888887653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-10 Score=112.15 Aligned_cols=129 Identities=12% Similarity=-0.032 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~ 274 (636)
+.....+.+.+...++. +|||+|||+|.++..+++.+ ..++++ |+++.+++.|+++ + ..+.+...|..
T Consensus 26 ~~i~~~~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 100 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFAL---ERNPQYLGFIRDNLKKFVARNVTLVEAFAP 100 (204)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCTTSEEEEE---ECCHHHHHHHHHHHHHHTCTTEEEEECCTT
T ss_pred HHHHHHHHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCcEEEEeCChh
Confidence 33434556666655555 99999999999999999986 666677 8899999888754 3 35778888875
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhc
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC 354 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~ 354 (636)
......++||+|++...+. +...++.++.++|||||++++..+.. ...+.+.+.++..+
T Consensus 101 ~~~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~~~~~l~~~g 159 (204)
T 3e05_A 101 EGLDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------DTLTKAVEFLEDHG 159 (204)
T ss_dssp TTCTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------HHHHHHHHHHHHTT
T ss_pred hhhhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------ccHHHHHHHHHHCC
Confidence 5443447899999987662 66899999999999999999986511 12334556677778
Q ss_pred eE
Q 006662 355 WK 356 (636)
Q Consensus 355 Wk 356 (636)
|+
T Consensus 160 ~~ 161 (204)
T 3e05_A 160 YM 161 (204)
T ss_dssp CE
T ss_pred Cc
Confidence 73
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=127.96 Aligned_cols=100 Identities=10% Similarity=-0.034 Sum_probs=75.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC----CC-------eEEEEecc------ccC--CC
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VP-------ALIGVMAS------IRL--PY 278 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg----~~-------~~~~~~d~------~~L--pf 278 (636)
+.+|||||||+|..+..++.. +..++++ |+|+.+++.|+++. .. +.+.+.+. ..+ ++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~Gi---D~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVAT---DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEE---ECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 358999999999766666555 4567777 99999999998652 21 34556655 323 46
Q ss_pred CCCCeeEEEecccccccc--cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWG--QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~--~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+|+|..++++.. .+...+++++.|+|||||+|+++.+
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 678999999999885432 2447999999999999999999976
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=115.77 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=88.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~ 299 (636)
.+|||||||+|.++..++ ..+.++++++. .+.+..++...+++++++||+|++..++ |+ .++
T Consensus 69 ~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~~ 130 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TNI 130 (215)
T ss_dssp SCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SCH
T ss_pred CeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cCH
Confidence 489999999999998885 34555555442 3456778888889989999999999999 54 688
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecccc-----cEEEEeCCC
Q 006662 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK-----DLAIWQKPT 371 (636)
Q Consensus 300 ~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~-----~~aIWqKp~ 371 (636)
..++.++.++|+|||++++..+...+ . ..+.+.++++..+|+.+.... .+.+++|..
T Consensus 131 ~~~l~~~~~~L~~gG~l~i~~~~~~~--------~-------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 131 RDFLEEANRVLKPGGLLKVAEVSSRF--------E-------DVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTG 192 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECGGGC--------S-------CHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECS
T ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCC--------C-------CHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecC
Confidence 99999999999999999998652211 0 234567788888998765321 245666654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-10 Score=112.30 Aligned_cols=107 Identities=9% Similarity=-0.044 Sum_probs=83.8
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP 277 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp 277 (636)
....+.+.+...++. +|||+|||+|.++..+++++..++++ |+++.+++.|+++ +. .+.+...|.....
T Consensus 43 ~~~~~l~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~~v---D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 117 (204)
T 3njr_A 43 MRALTLAALAPRRGE--LLWDIGGGSGSVSVEWCLAGGRAITI---EPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL 117 (204)
T ss_dssp HHHHHHHHHCCCTTC--EEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG
T ss_pred HHHHHHHhcCCCCCC--EEEEecCCCCHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc
Confidence 334455666555555 99999999999999999997777777 8899999888755 33 4788888877633
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.....||+|++...+ +.. ++.++.++|||||++++...
T Consensus 118 ~~~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 118 ADLPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp TTSCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred ccCCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 334579999987644 456 99999999999999999865
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-11 Score=123.89 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=82.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccccCCC-CCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG----V--PALIGVMASIRLPY-PSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~~Lpf-~~~sFDlV~~s~~ 291 (636)
.+|||||||+|.++..+++.+. .++++ |+++.+++.|+++. . .+.+..+|...+++ ++++||+|++..+
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEE---ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CeEEEECCCCCHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 4999999999999999988764 66677 88999998887652 2 36888889888888 6889999999999
Q ss_pred cccc---ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPW---GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~---~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++. ..+...+++++.++|||||++++..+
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8552 23447899999999999999999976
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=121.42 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=78.7
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecc-ccCCCC-CCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLPYP-SRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~-~~Lpf~-~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||||||+|.++..+++.+..++++ |+++.+++.++++..++.+...|. ..+|++ +++||+|+++ .
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------~ 119 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAARWAAY---DFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------R 119 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------S
T ss_pred CeEEEeCCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------C
Confidence 489999999999999999998877777 999999999998877889999998 678888 8999999987 2
Q ss_pred ChHHHHHHHHhcccCCcEEE
Q 006662 298 YDGLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Li 317 (636)
++..++.++.++|||||.++
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEE
Confidence 45678999999999999999
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=126.22 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=84.7
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC------------CCeEEEE
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG------------VPALIGV 270 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg------------~~~~~~~ 270 (636)
.++.+.+.+........+|||||||+|.++..+++. ...++++ |+++.+++.|+++. ..+.+.+
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 96 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT---DIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT 96 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEE
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEE---eCCHHHHHHHHHHHHHhhhcccccccceEEEEE
Confidence 334444444332123348999999999999999876 4456666 88999998887542 2478888
Q ss_pred eccccCC----CC--CCCeeEEEecccccccc-cC---hHHHHHHHHhcccCCcEEEEEeC
Q 006662 271 MASIRLP----YP--SRAFDMAHCSRCLIPWG-QY---DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 271 ~d~~~Lp----f~--~~sFDlV~~s~~L~h~~-~d---~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|...++ ++ +++||+|+|+.++ ||. .+ ...++.++.++|||||+|+++.+
T Consensus 97 ~D~~~~~~~~~~~~~~~~fD~V~~~~~l-~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 97 ADSSKELLIDKFRDPQMCFDICSCQFVC-HYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCTTTSCSTTTCSSTTCCEEEEEEETCG-GGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ecccccchhhhcccCCCCEEEEEEecch-hhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 8888876 53 4599999999988 554 33 36899999999999999999976
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=108.53 Aligned_cols=109 Identities=17% Similarity=0.067 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
+.....+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+ +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~-~~~~d~ 84 (178)
T 3hm2_A 11 QHVRALAISALAPKPHE--TLWDIGGGSGSIAIEWLRSTPQTTAVCF---EISEERRERILSNAINLGVSDRI-AVQQGA 84 (178)
T ss_dssp HHHHHHHHHHHCCCTTE--EEEEESTTTTHHHHHHHTTSSSEEEEEE---CSCHHHHHHHHHHHHTTTCTTSE-EEECCT
T ss_pred HHHHHHHHHHhcccCCC--eEEEeCCCCCHHHHHHHHHCCCCeEEEE---eCCHHHHHHHHHHHHHhCCCCCE-EEecch
Confidence 33445566666555444 9999999999999999988 5556666 9999999988754 33 35 555554
Q ss_pred c-cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 I-RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~-~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. .++...++||+|++...+++ ..+++++.++|||||++++...
T Consensus 85 ~~~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 85 PRAFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp TGGGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred HhhhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 2 33333388999999988844 5799999999999999999865
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=118.25 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=89.3
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHH----HHH----cCC-CeEEEEeccccCCCCCCCeeEEEe
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQF----ALE----RGV-PALIGVMASIRLPYPSRAFDMAHC 288 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~----A~e----rg~-~~~~~~~d~~~Lpf~~~sFDlV~~ 288 (636)
.+|||||||+|.++..|+++ +..++++ |+++.+++. |++ .+. ++.+.++|...+|+++++ |.|+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gv---D~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVAL---DADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEE---ESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 38999999999999999998 5566666 777776553 221 232 688999999999988777 87774
Q ss_pred cccc---c-ccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCC-chhhhHHHHHHHHHHHHHhceEeec
Q 006662 289 SRCL---I-PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR-TTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 289 s~~L---~-h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~-t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
.... + |+..++..+++++.|+|||||.++++.....|......... .........+.+..++...+|+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 3322 1 23446689999999999999999997543333221110000 0011112233477788888887643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.2e-11 Score=127.75 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp 277 (636)
+.+.+.+.+.+........+|||+|||+|.++..+++++..++.+ |+++.+++.|+++ +..+.+...|....+
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gv---Dis~~al~~A~~n~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGV---EDDLASVLSLQKGLEANALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEE---ESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence 334444444432112233489999999999999999998777777 8899999888754 456888888988887
Q ss_pred CCCCCeeEEEeccccccc----ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPW----GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~----~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++++||+|+++..+++. ..+...++.++.++|||||.++++..
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 777899999999888441 22347899999999999999999965
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.3e-11 Score=116.31 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp 277 (636)
....+.+.+.++ ++ .+|||+|||+|.++..+++. ..++++ |+++.+++.|+++ +..+.+...|...++
T Consensus 21 ~~~~~~~~~~~~--~~--~~vLdiG~G~G~~~~~l~~~-~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 21 PEWVAWVLEQVE--PG--KRIADIGCGTGTATLLLADH-YEVTGV---DLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHSC--TT--CEEEEESCTTCHHHHHHTTT-SEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHcC--CC--CeEEEecCCCCHHHHHHhhC-CeEEEE---ECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 345555655543 33 48999999999999999988 666666 8899999888754 456788888988888
Q ss_pred CCCCCeeEEEecc-cccccc--cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSR-CLIPWG--QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~-~L~h~~--~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ ++||+|++.. +++|+. .+...+++++.++|||||.+++..+
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 76 7899999986 776653 2337899999999999999999865
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=121.50 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=80.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
..+|||||||+|.++..+++. +..++++ |+++.+++.|+++...+.+...+...+|+++++||+|+++.+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence 348999999999999999987 6677777 9999999999998878889999998999988999999987653
Q ss_pred cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++.++.|+|||||.+++..+
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEE
T ss_pred ----hhHHHHHHhcCCCcEEEEEEc
Confidence 257999999999999999976
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=121.70 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHH------HHHHHHHc----C--CCeE
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEA------QVQFALER----G--VPAL 267 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a------~l~~A~er----g--~~~~ 267 (636)
.....+.+.+...++. +|||||||+|.++..++++ + ..++++ |+++. +++.|+++ + ..+.
T Consensus 30 ~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~g~~~~v~gv---D~s~~~~~~~~~~~~a~~~~~~~~~~~~v~ 104 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSSGHVTGI---DIASPDYGAPLTLGQAWNHLLAGPLGDRLT 104 (275)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHHHHHCTTCEEEEE---CSSCTTCCSSSCHHHHHHHHHTSTTGGGEE
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEE---ECCccccccHHHHHHHHHHHHhcCCCCceE
Confidence 3444556666555555 9999999999999999987 3 666677 55554 55555443 2 2477
Q ss_pred EEEec---cccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 268 IGVMA---SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 268 ~~~~d---~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+...| ...+|+++++||+|++..+++|+. ++..+++.+.++++|||++++...
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEECChhhhccCCCCCCCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 88777 556677889999999999996664 677777777777788999999864
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-11 Score=119.87 Aligned_cols=99 Identities=11% Similarity=0.031 Sum_probs=81.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC--CeEEEEeccccCCCCC-----CCeeEEEecccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPS-----RAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~--~~~~~~~d~~~Lpf~~-----~sFDlV~~s~~L 292 (636)
.+|||||||+|.++..|++.+..++++ |+++.+++.++++.. ++.+.++|...+++.. ..||+|++..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFPRVIGL---DVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSSCEEEE---ESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 489999999999999999987666666 889999999987743 6788888887765432 349999999999
Q ss_pred ccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++... +...+++++.++|||||++++...
T Consensus 135 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 135 HHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp TTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 66543 448999999999999999988864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=113.12 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L 276 (636)
......+.+.+...++. +|||||||+|.++..+++.+..++++ |+++.+++.|+++ +. ++.+...|....
T Consensus 63 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 63 PYMVARMTELLELTPQS--RVLEIGTGSGYQTAILAHLVQHVCSV---ERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhCCEEEEE---ecCHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 34455666666655555 99999999999999999987777777 8899999888764 32 578888888777
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+.++++||+|++..+++++. + ++.++|||||++++..+.
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~-~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIP-T------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCC-T------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhh-H------HHHHhcccCcEEEEEEcC
Confidence 66678999999999886655 2 689999999999999774
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=106.55 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~ 275 (636)
.....+.+.+.+...++. +|||+|||+|.++..+++.+..++++ |+++.+++.++++ + .++.+...|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 94 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLNKDD--VVVDVGCGSGGMTVEIAKRCKFVYAI---DYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94 (183)
T ss_dssp CHHHHHHHHHHHCCCTTC--EEEEESCCCSHHHHHHHTTSSEEEEE---ECSHHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHHcCCCcEEEEECCccc
Confidence 355556677776655554 99999999999999999976677777 8899998888755 3 357888888766
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++++||+|+++.+ .+...++.++.++ |||.+++..+
T Consensus 95 -~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 95 -VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp -HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred -cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 667789999999876 4668899999999 9999999975
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=118.56 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=90.1
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEEE-EeccccCC---CCCCCeeEEEeccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP---YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~-~~d~~~Lp---f~~~sFDlV~~s~~L~ 293 (636)
..+|||||||||.++..|++++. .++++ |+++.|++.+.++...+... ..+...++ ++..+||+|++..+++
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aV---Dvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGAKLVYAV---DVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEE---CSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred ccEEEecCCCccHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence 34899999999999999999864 56666 77888887765544443322 22333333 3445699999988774
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeCCCCccccc-----cCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHW-----KGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~-----~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
+. ..+|.++.|+|||||.|++...| .|.... .+.-+.........+++.+++...+|+..
T Consensus 163 sl----~~vL~e~~rvLkpGG~lv~lvkP-qfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 163 SL----NLILPALAKILVDGGQVVALVKP-QFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp CG----GGTHHHHHHHSCTTCEEEEEECG-GGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred hH----HHHHHHHHHHcCcCCEEEEEECc-ccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 33 68999999999999999997432 121110 12233345555667778888889999764
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=114.57 Aligned_cols=109 Identities=14% Similarity=0.034 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC---CeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~---~~~~~~~d~~~Lpf 278 (636)
....+.+.+.+...++. +|||||||+|.++..+++.+..++++ |+++.+++.++++.. ++.+...|......
T Consensus 56 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSV---EINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEEE---eCCHHHHHHHHHHHhhcCCeEEEECCcccccc
Confidence 34555666666555555 99999999999999999987666677 889999999887632 57888888766333
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.+++||+|++..+++++. .++.++|||||++++..++
T Consensus 131 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcC
Confidence 467899999999986654 4789999999999999763
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-11 Score=121.43 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~L 276 (636)
..+.+.+++.+. .+ +.+|||||||+|..+.++++... .++.+ |+++.+++.|+++ +..+.+..++...+
T Consensus 47 ~~~m~~~a~~~~-~~--G~rVLdiG~G~G~~~~~~~~~~~~~v~~i---d~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 120 (236)
T 3orh_A 47 TPYMHALAAAAS-SK--GGRVLEVGFGMAIAASKVQEAPIDEHWII---ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-TT--CEEEEEECCTTSHHHHHHTTSCEEEEEEE---ECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-cC--CCeEEEECCCccHHHHHHHHhCCcEEEEE---eCCHHHHHHHHHHHhhCCCceEEEeehHHhh
Confidence 445556666553 23 34899999999999999998743 34444 8899999998765 34466666665443
Q ss_pred --CCCCCCeeEEEe-----cccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 --PYPSRAFDMAHC-----SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 --pf~~~sFDlV~~-----s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++++++||.|+. ...+.|. .+...++.++.|+|||||.|++..
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~~~~-~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccCCceEEEeeeecccchhhh-cchhhhhhhhhheeCCCCEEEEEe
Confidence 578899999975 3334333 356889999999999999998863
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-10 Score=117.49 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=86.7
Q ss_pred HHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 204 YIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 204 ~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
....+.+.++. .+ ..+|||||||+|.++..++++ +..++.+ |++ .+++.|+++ +. .+.+...|.
T Consensus 151 ~~~~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 151 PAQLIAQLVNENKIE--PLKVLDISASHGLFGIAVAQHNPNAEIFGV---DWA-SVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp HHHHHHHHHTC--CC--CSEEEEETCTTCHHHHHHHHHCTTCEEEEE---ECH-HHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred hHHHHHHhcccccCC--CCEEEEECCCcCHHHHHHHHHCCCCeEEEE---ecH-HHHHHHHHHHHhcCCCcceEEEeccc
Confidence 33455555544 33 349999999999999999987 5666666 888 888887754 32 488888888
Q ss_pred ccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
...+++.+ ||+|++..+++++.+.. ..+++++.++|+|||++++..+
T Consensus 225 ~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 225 FEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp TTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 77777655 99999999998775322 7899999999999999999875
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-10 Score=108.77 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=87.8
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccC-CCCCCCeeEEEecccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL-PYPSRAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~L-pf~~~sFDlV~~s~~L 292 (636)
.+|||+||| +|.++..+++. +..++++ |+++.+++.|+++ +.++.+..+|...+ ++++++||+|+++..+
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNCKVTAT---EVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCCEEEEE---ECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 499999999 99999999998 7777777 8899999888654 45678888886433 4667899999998665
Q ss_pred ccccc------------------ChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhc
Q 006662 293 IPWGQ------------------YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC 354 (636)
Q Consensus 293 ~h~~~------------------d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~ 354 (636)
++... ....++.++.++|||||++++..+.. . ...+.+.+.++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~----~~~~~~~~~l~~~g 197 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK------------E----KLLNVIKERGIKLG 197 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC------------H----HHHHHHHHHHHHTT
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc------------H----hHHHHHHHHHHHcC
Confidence 33221 02678999999999999999985411 1 12344666777778
Q ss_pred eEee
Q 006662 355 WKKL 358 (636)
Q Consensus 355 Wk~v 358 (636)
|+..
T Consensus 198 ~~~~ 201 (230)
T 3evz_A 198 YSVK 201 (230)
T ss_dssp CEEE
T ss_pred CceE
Confidence 8543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=112.09 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=79.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC--CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP--YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp--f~~~sFDlV~~s~ 290 (636)
.+|||||||+|.++..+++. +..++++ |+++.+++.|+++ + .++.+..+|...++ +++++||+|+++.
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gv---D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGI---DIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEE---EcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 48999999999999999987 4566777 8899998887654 3 36888888988877 7788999999986
Q ss_pred ccccccc--------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~--------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. +|.. ....++.++.++|||||.+++...
T Consensus 120 ~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 SD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CC-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 4432 125799999999999999999853
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=113.73 Aligned_cols=98 Identities=12% Similarity=0.201 Sum_probs=79.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC--CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP--YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp--f~~~sFDlV~~s~ 290 (636)
.+|||||||+|.++..|++. +..++++ |+++.+++.|+++ +. ++.+..+|...++ +++++||.|+++.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~gi---D~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGI---ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEE---EechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 38999999999999999987 5667777 9999999888754 33 5888888887776 7788999998865
Q ss_pred cccccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. +|... ...++.++.++|||||.|++...
T Consensus 117 ~~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 SD-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CC-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CC-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 44 44321 25799999999999999999853
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=109.33 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=86.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC-
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY- 298 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d- 298 (636)
.+|||+|||+|.++..+++++ .++++ |+++.+++. ..++.+..+|... ++++++||+|+++..+++..+.
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~-~v~gv---D~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN-TVVST---DLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS-EEEEE---ESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCT
T ss_pred CeEEEeccCccHHHHHHHhcC-cEEEE---ECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccc
Confidence 389999999999999999998 77777 999999887 3456778888766 6677899999998887443322
Q ss_pred -------hHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 299 -------DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 299 -------~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
...++.++.+.| |||.+++..+.. ...+.+.++++..+|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------CCHHHHHHHHHHCCCcEEE
Confidence 257889999999 999999986411 0123466677778887543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=114.22 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEe
Q 006662 201 ADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVM 271 (636)
Q Consensus 201 ~~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~ 271 (636)
.+.+.+.+.+.+... ++. +|||+|||+|.++..++.++. .++++ |+++.+++.|+++ +. .+.+..+
T Consensus 37 ~~~~~~~l~~~l~~~~~~~--~vLDlGcGtG~~~~~~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 111 (201)
T 2ift_A 37 GDRVKETLFNWLMPYIHQS--ECLDGFAGSGSLGFEALSRQAKKVTFL---ELDKTVANQLKKNLQTLKCSSEQAEVINQ 111 (201)
T ss_dssp -CHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred HHHHHHHHHHHHHHhcCCC--eEEEcCCccCHHHHHHHHccCCEEEEE---ECCHHHHHHHHHHHHHhCCCccceEEEEC
Confidence 344455555555432 344 899999999999999887764 66667 9999999988754 33 6788888
Q ss_pred ccccCCC--CCCC-eeEEEecccccccccChHHHHHHH--HhcccCCcEEEEEeCCC
Q 006662 272 ASIRLPY--PSRA-FDMAHCSRCLIPWGQYDGLYLIEV--DRVLRPGGYWILSGPPV 323 (636)
Q Consensus 272 d~~~Lpf--~~~s-FDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~Liis~p~~ 323 (636)
|...+.. ++++ ||+|++...+ + ..+...++.++ .++|||||.++++..+.
T Consensus 112 d~~~~~~~~~~~~~fD~I~~~~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 112 SSLDFLKQPQNQPHFDVVFLDPPF-H-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CHHHHTTSCCSSCCEEEEEECCCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CHHHHHHhhccCCCCCEEEECCCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8766432 3678 9999998775 3 23457888888 77899999999987533
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-10 Score=111.77 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=86.6
Q ss_pred cEEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCC---CCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP---SRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~---~~sFDlV~~s 289 (636)
.+|||||||+|.++..++. .+..++++ |+++.+++.|+++ +. ++.+..++...++++ +++||+|++.
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHLHVTIV---DSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4899999999999999985 35666667 8899888887653 43 588888888887764 6799999996
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
.+ .+...++.++.++|||||+|++.... ...+ ....+.+.++..+++..
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~g~-----------~~~~----~~~~~~~~l~~~g~~~~ 197 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALKAA-----------SAEE----ELNAGKKAITTLGGELE 197 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEECC------------CHH----HHHHHHHHHHHTTEEEE
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEeCC-----------CchH----HHHHHHHHHHHcCCeEe
Confidence 52 46689999999999999999987321 1111 23345566777777654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=113.73 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=86.5
Q ss_pred CcccHHHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEE
Q 006662 197 FPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALI 268 (636)
Q Consensus 197 f~~g~~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~ 268 (636)
|..+.+.. .+..++... ++. +|||+|||+|.++..+++++. .++++ |+++.+++.|+++ +. .+.+
T Consensus 31 ~~~~~d~~--ll~~~~~~~~~~~--~vLDlG~G~G~~~~~la~~~~~~v~gv---Di~~~~~~~a~~n~~~~~~~~~v~~ 103 (259)
T 3lpm_A 31 FSFSIDAV--LLAKFSYLPIRKG--KIIDLCSGNGIIPLLLSTRTKAKIVGV---EIQERLADMAKRSVAYNQLEDQIEI 103 (259)
T ss_dssp BCCCHHHH--HHHHHCCCCSSCC--EEEETTCTTTHHHHHHHTTCCCEEEEE---CCSHHHHHHHHHHHHHTTCTTTEEE
T ss_pred ccCcHHHH--HHHHHhcCCCCCC--EEEEcCCchhHHHHHHHHhcCCcEEEE---ECCHHHHHHHHHHHHHCCCcccEEE
Confidence 34455643 355555544 444 999999999999999999854 56666 9999999888754 33 3788
Q ss_pred EEeccccCC--CCCCCeeEEEeccccccc----c---------------cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 269 GVMASIRLP--YPSRAFDMAHCSRCLIPW----G---------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 269 ~~~d~~~Lp--f~~~sFDlV~~s~~L~h~----~---------------~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...|...++ +++++||+|+++..+... . .+...++.++.++|||||+|++..+
T Consensus 104 ~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 104 IEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp ECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 888887765 557899999997654222 0 1125699999999999999999865
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=117.35 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=84.5
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
.+|||+|||+|.++..+++.+..++++ |+++.+++.++++ +..+.+...+... ++++++||+|+++...++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~~v~gv---Di~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~- 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGGKALGV---DIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL- 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE---ESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH-
T ss_pred CEEEEecCCCcHHHHHHHHhCCeEEEE---ECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH-
Confidence 499999999999999999987666666 7777777777653 4446677666544 245678999999765422
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
...++.++.++|||||++++++... ...+.+.++++..+|+.+.
T Consensus 197 ---~~~~l~~~~~~LkpgG~lils~~~~-----------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 197 ---HAALAPRYREALVPGGRALLTGILK-----------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEEG-----------------GGHHHHHHHHHHTTCEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEeecc-----------------CCHHHHHHHHHHCCCEEEE
Confidence 3689999999999999999986411 1134566777778887654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=134.72 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=75.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----ccc----chhh-ccccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli----~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
...|||+|||+|+|+-+++..+- -.|+.+|.++..+..+.+. |+- -+++ |..+.+.....+||+|-++-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46899999999999998877653 2456667777788777664 332 1121 22121222347899998865
Q ss_pred c-cccC-------CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEe
Q 006662 548 I-FSLY-------KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 548 ~-fs~~-------~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
- |+.. ...-+...++.++-|+|+|||.++++-.......-.+.+....++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i 679 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEI 679 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeee
Confidence 3 3311 1112456889999999999999999854421111233444455554443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-11 Score=110.70 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHHhhccC--CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEec
Q 006662 199 RGADAYIDDIGKLINLK--DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMA 272 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d 272 (636)
...+...+.+.+.+... ++. +|||+|||+|.++..+++++..++++ |+++.+++.|+++ +.++.+...|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~--~vLD~GcG~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~d 96 (171)
T 1ws6_A 22 PSPVRLRKALFDYLRLRYPRRG--RFLDPFAGSGAVGLEAASEGWEAVLV---EKDPEAVRLLKENVRRTGLGARVVALP 96 (171)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCC--EEEEETCSSCHHHHHHHHTTCEEEEE---CCCHHHHHHHHHHHHHHTCCCEEECSC
T ss_pred CCHHHHHHHHHHHHHhhccCCC--eEEEeCCCcCHHHHHHHHCCCeEEEE---eCCHHHHHHHHHHHHHcCCceEEEecc
Confidence 33455666666666432 344 89999999999999999988766666 9999999888754 3367777777
Q ss_pred ccc-CC-C--CCCCeeEEEecccccccccChHHHHHHHH--hcccCCcEEEEEeCC
Q 006662 273 SIR-LP-Y--PSRAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGPP 322 (636)
Q Consensus 273 ~~~-Lp-f--~~~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~Liis~p~ 322 (636)
... ++ . ..++||+|+++..++ .+...++..+. ++|||||.++++.+.
T Consensus 97 ~~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 97 VEVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred HHHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 655 22 1 134899999987663 34456777777 999999999998763
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.7e-10 Score=104.60 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~ 275 (636)
......+.+.+...++. +|||+|||+|.++..+++.+..++.+ |+++.+++.++++ +. .+.+...+...
T Consensus 19 ~~~~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAI---DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCEEEEE---ECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 44555666666555555 99999999999999999987666666 8888888888753 33 56777777655
Q ss_pred CCCCC-CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPS-RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~-~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++. ++||+|++...+. +...++.++.++|+|||.+++..+
T Consensus 94 -~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp -HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hcccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 3333 5899999987663 447899999999999999999865
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=108.77 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=79.3
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC-CCCCCee
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP-YPSRAFD 284 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp-f~~~sFD 284 (636)
.++. +|||+|||+|.++..++++ ...++++ |+++.+++.|+++ + .++.+...|...++ +.+++||
T Consensus 21 ~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 21 KEGD--TVVDATCGNGNDTAFLASLVGENGRVFGF---DIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CTTC--EEEESCCTTSHHHHHHHHHHCTTCEEEEE---CSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCC--EEEEcCCCCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence 4444 9999999999999999987 2466666 8899999888755 2 35788888887776 6678999
Q ss_pred EEEecccccccc-----c---ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWG-----Q---YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~-----~---d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+++..+.+.. . +...++.++.++|||||++++...
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 999976552211 1 225799999999999999999864
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=112.27 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=77.8
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC-C--CCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL-P--YPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L-p--f~~~sFDlV~~s 289 (636)
.+|||||||+|.++..+++. +..++++ |+++.+++.|+++ +. ++.+..+|...+ + +++++||.|+++
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~~v~gi---D~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQDFLGI---EVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCCCeEEEE---EecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 48999999999999999987 4556677 8899988887644 33 588888887663 4 788999999997
Q ss_pred ccccccccCh--------HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~p 321 (636)
+.. +|.... ..++.++.|+|||||+|+++..
T Consensus 113 ~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 654 554332 2599999999999999999864
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=108.58 Aligned_cols=127 Identities=17% Similarity=0.088 Sum_probs=89.7
Q ss_pred ceecCCCCCCCcccHHHHHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc--
Q 006662 187 RFSFPGGGTMFPRGADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER-- 262 (636)
Q Consensus 187 ~~~F~ggg~~f~~g~~~~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er-- 262 (636)
.+..+.+. ......+.+.+.+.+.+. ..++ .+|||+|||+|.++..+++++ ..++++ |+++.+++.|+++
T Consensus 15 ~~~~~~~~-~~rp~~~~~~~~~~~~l~~~~~~--~~vLD~GcG~G~~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~ 88 (187)
T 2fhp_A 15 RLKALDGD-NTRPTTDKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMDKSICI---EKNFAALKVIKENIA 88 (187)
T ss_dssp BCCCCCCC-SSCCCCHHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHH
T ss_pred cccCCCCC-CcCcCHHHHHHHHHHHHHhhcCC--CCEEEeCCccCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHH
Confidence 34444333 233445666777777764 2233 489999999999999988875 466666 8898998888654
Q ss_pred --CC--CeEEEEeccccC----CCCCCCeeEEEecccccccccChHHHHHHH--HhcccCCcEEEEEeC
Q 006662 263 --GV--PALIGVMASIRL----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEV--DRVLRPGGYWILSGP 321 (636)
Q Consensus 263 --g~--~~~~~~~d~~~L----pf~~~sFDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~Liis~p 321 (636)
+. .+.+...|.... ++++++||+|+++..+ + .......+..+ .++|+|||++++..+
T Consensus 89 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~-~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 89 ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-A-KQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-G-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCC-C-chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 32 477888876552 2236789999998765 3 23556777777 899999999999875
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.5e-10 Score=120.01 Aligned_cols=152 Identities=12% Similarity=0.067 Sum_probs=102.9
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC----
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV---- 264 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~---- 264 (636)
.+.....+...+.+.+.++...+ .+|||+|||+|.++..++++ +..++++ |+++.+++.++++ +.
T Consensus 201 ~Fs~~~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~p~~~V~gv---D~s~~al~~Ar~n~~~ngl~~~~ 275 (375)
T 4dcm_A 201 VFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFV---DESPMAVASSRLNVETNMPEALD 275 (375)
T ss_dssp CTTCSSCCHHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHCGGGGG
T ss_pred cccCCcccHHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHCCCCEEEEE---ECcHHHHHHHHHHHHHcCCCcCc
Confidence 33333445555566777665444 48999999999999999998 5667777 8899999888754 32
Q ss_pred CeEEEEeccccCCCCCCCeeEEEeccccccc--c-cCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhH
Q 006662 265 PALIGVMASIRLPYPSRAFDMAHCSRCLIPW--G-QYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLK 340 (636)
Q Consensus 265 ~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~--~-~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~ 340 (636)
.+.+...|... ++++++||+|+++..+++. . ... ..++.++.++|||||.++++.+... .+
T Consensus 276 ~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~-------------~~- 340 (375)
T 4dcm_A 276 RCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL-------------DY- 340 (375)
T ss_dssp GEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS-------------CH-
T ss_pred eEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc-------------CH-
Confidence 36777777765 5677899999999887432 1 122 4689999999999999999864211 01
Q ss_pred HHHHHHHHHHHHhceEeecccccEEEEeCC
Q 006662 341 SEQNGIETIARSLCWKKLIQKKDLAIWQKP 370 (636)
Q Consensus 341 ~~~~~ie~la~~l~Wk~v~~~~~~aIWqKp 370 (636)
...+++.+. ..+.+.+.....|.+..
T Consensus 341 --~~~l~~~fg--~~~~~a~~~~F~V~~~~ 366 (375)
T 4dcm_A 341 --FHKLKKIFG--NCTTIATNNKFVVLKAV 366 (375)
T ss_dssp --HHHHHHHHS--CCEEEEECSSEEEEEEE
T ss_pred --HHHHHHhcC--CEEEEeeCCCEEEEEEc
Confidence 122334443 35666666666666543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-11 Score=127.68 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=91.5
Q ss_pred CcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc-----------C
Q 006662 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER-----------G 263 (636)
Q Consensus 197 f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er-----------g 263 (636)
+.+.....+..+.+.+.+.++. +|||||||+|.++..++.. +. .++++ |+++.+++.|+++ +
T Consensus 154 YGEt~~~~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGI---DiS~~~lelAr~n~e~frkr~~~~G 228 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGV---EKADIPAKYAETMDREFRKWMKWYG 228 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEE---ECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455666777788887777766 9999999999999999865 44 36666 8888777776531 3
Q ss_pred ---CCeEEEEeccccCCCCC--CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 264 ---VPALIGVMASIRLPYPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 264 ---~~~~~~~~d~~~Lpf~~--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++.+..+|+..+|+.+ ..||+|+++..+ + .++....|.++.|+|||||.|++..+
T Consensus 229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 35889999998888754 479999998765 3 34668889999999999999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-10 Score=118.13 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=83.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp 277 (636)
..+.+.++... ..+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ + ..+.+...|.. .+
T Consensus 192 ~~l~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~ 264 (369)
T 3gwz_A 192 GQVAAAYDFSG--AATAVDIGGGRGSLMAAVLDAFPGLRGTLL---ER-PPVAEEARELLTGRGLADRCEILPGDFF-ET 264 (369)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TC
T ss_pred HHHHHhCCCcc--CcEEEEeCCCccHHHHHHHHHCCCCeEEEE---cC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CC
Confidence 34444444333 359999999999999999987 5566666 88 7888777653 3 35888888876 56
Q ss_pred CCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++. .||+|++..++++|.+.. ..+|+++.++|||||++++..+
T Consensus 265 ~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 265 IPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 666 899999999997775332 4799999999999999999864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=120.73 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G--VPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~ 274 (636)
..+.+.+.+.+...++. +|||||||+|.++..+++.+. .++++ |+++ +++.|+++ + ..+.+..++..
T Consensus 50 ~~~~~~i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~gv---D~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 123 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGV---DQSE-ILYQAMDIIRLNKLEDTITLIKGKIE 123 (340)
T ss_dssp HHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEE---ESST-HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhhhhhcCCC--EEEEeeccCcHHHHHHHHcCCCEEEEE---ChHH-HHHHHHHHHHHcCCCCcEEEEEeeHH
Confidence 44555666665555555 999999999999999999864 56666 6664 66666543 3 35888999999
Q ss_pred cCCCCCCCeeEEEeccccc--ccccChHHHHHHHHhcccCCcEEEE
Q 006662 275 RLPYPSRAFDMAHCSRCLI--PWGQYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~--h~~~d~~~~L~el~RvLKPGG~Lii 318 (636)
.+++++++||+|++..+.. +...+...++.++.|+|||||.++.
T Consensus 124 ~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 124 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred HhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 9998888999999876321 2233447899999999999999983
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-10 Score=116.21 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=80.0
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHH-Hhhc-CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCC
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAY-LMSR-NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRA 282 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~-La~~-~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~s 282 (636)
.++.+.++. +|||||||+|.++.. +++. +..++++ |+++++++.|+++ +. ++.+..+|...++ +++
T Consensus 116 ~la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~gI---Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~ 188 (298)
T 3fpf_A 116 ALGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNVV---EIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLE 188 (298)
T ss_dssp HHTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEEE---ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCC
T ss_pred HHcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEEE---ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCC
Confidence 445555555 999999999977654 4443 7777777 9999999998765 43 5788888888775 689
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||+|++... .++...+++++.|+|||||.|++...
T Consensus 189 FDvV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 189 FDVLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CSEEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCEEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 999998553 35778999999999999999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-10 Score=116.61 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCcH----HHHHHhhc------CCEEEEcCcCCchHHHHHHHHHcC-------------------------
Q 006662 219 IRTAIDTGCGVAS----WGAYLMSR------NILAVSFAPRDTHEAQVQFALERG------------------------- 263 (636)
Q Consensus 219 ~r~VLDIGCGtG~----~a~~La~~------~v~vv~i~p~Dis~a~l~~A~erg------------------------- 263 (636)
..+|||+|||+|. ++..|++. +..++++ |+|+.+++.|+++.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~at---Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~ 182 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFAS---DIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 182 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEE---ESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEE---ECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCC
Confidence 3589999999997 56666654 2345555 99999999998641
Q ss_pred -----------CCeEEEEeccccCCCC-CCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 264 -----------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 264 -----------~~~~~~~~d~~~Lpf~-~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
..+.|...|....|++ .+.||+|+|..+++++.+.. ..++.++.+.|+|||+|++..
T Consensus 183 ~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 183 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred CCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1367788887776665 57899999999997775322 789999999999999999863
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=109.63 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=85.4
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc-----C-CCeEEEEeccccC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G-VPALIGVMASIRL 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er-----g-~~~~~~~~d~~~L 276 (636)
..+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ + ..+.+...|....
T Consensus 86 ~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 86 SAMVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVESY---EARPHHLAQAERNVRAFWQVENVRFHLGKLEEA 160 (258)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred HHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 4556666655555 9999999999999999987 5667777 8899998888765 4 3578888888888
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++++||+|++. . +++..++.++.++|+|||++++..+
T Consensus 161 ~~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 161 ELEEAAYDGVALD-----L-MEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCCcCEEEEC-----C-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8888899999983 2 3566899999999999999999976
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-10 Score=109.05 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC-CeEEEEec
Q 006662 200 GADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV-PALIGVMA 272 (636)
Q Consensus 200 g~~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d 272 (636)
..+...+.+.+.+... ++. +|||+|||+|.++..++.++. .++++ |+++.+++.|+++ +. ++.+...|
T Consensus 37 ~~~~~~~~l~~~l~~~~~~~--~vLDlgcG~G~~~~~l~~~~~~~V~~v---D~s~~~l~~a~~~~~~~~~~~v~~~~~D 111 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPVIVDA--QCLDCFAGSGALGLEALSRYAAGATLI---EMDRAVSQQLIKNLATLKAGNARVVNSN 111 (202)
T ss_dssp -CHHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred CHHHHHHHHHHHHHhhcCCC--eEEEeCCCcCHHHHHHHhcCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3455556666666432 444 899999999999999888764 66667 9999999988754 33 67888888
Q ss_pred ccc-CCCCCCCeeEEEecccccccccChHHHHHHHHh--cccCCcEEEEEeC
Q 006662 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR--VLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~R--vLKPGG~Liis~p 321 (636)
... ++..+++||+|++...+ +. .....++.++.+ +|+|||+++++..
T Consensus 112 ~~~~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 112 AMSFLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 766 56667899999998764 32 355778888865 6999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=106.73 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=75.9
Q ss_pred HHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC----
Q 006662 206 DDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---- 277 (636)
Q Consensus 206 d~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp---- 277 (636)
..+.+.+. ..++. +|||+|||+|.++..+++. +..++++ |+++ +++. ..+.+...|....+
T Consensus 11 ~~~~~~~~~~~~~~--~vLd~G~G~G~~~~~l~~~~~~~~~v~~~---D~~~-~~~~-----~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 11 DEIQQSDKLFKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIAC---DLLP-MDPI-----VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHHCCCCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEE---ESSC-CCCC-----TTEEEEESCTTSHHHHHH
T ss_pred HHHHHHhCCCCCCC--eEEEeCCCCCHHHHHHHHHhCCCCeEEEE---ECcc-cccc-----CcEEEEEcccccchhhhh
Confidence 34444443 33444 9999999999999999887 3455555 5554 3222 45778888887766
Q ss_pred ----CCCCCeeEEEecccccccccCh-----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ----YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ----f~~~sFDlV~~s~~L~h~~~d~-----------~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|+++..+ ++.... ..++.++.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 80 LLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCCCCceeEEEECCCc-cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 677899999998877 444444 5889999999999999999865
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-09 Score=107.87 Aligned_cols=90 Identities=8% Similarity=0.055 Sum_probs=72.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcC---CCeEEEEecccc----CCCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIR----LPYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~----Lpf~~~sFDlV~~s~ 290 (636)
.+|||+|||+|.++..+++. + ..++++ |+++.+++.++++. .++.+...|... +++. ++||+|++
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-- 149 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAI---EYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE-- 149 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEE---ESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE--
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEE---ECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE--
Confidence 48999999999999999987 3 566677 88999998876542 457788888776 6766 78999983
Q ss_pred cccccccCh---HHHHHHHHhcccCCcEEEEE
Q 006662 291 CLIPWGQYD---GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 291 ~L~h~~~d~---~~~L~el~RvLKPGG~Liis 319 (636)
+. .++ ..++.++.++|||||++++.
T Consensus 150 ---~~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 ---DV-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---CC-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---ec-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 22 244 67899999999999999997
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-10 Score=114.08 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=84.8
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCC---cHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGV---ASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGt---G~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~ 274 (636)
.+++.+.+.+.... ...+|||||||+ |.++..+.+. +..++.+ |+++.+++.|+++. ..+.+..+|..
T Consensus 63 ~~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~v---D~sp~~l~~Ar~~~~~~~~v~~~~~D~~ 138 (274)
T 2qe6_A 63 KVLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYV---DIDPMVLTHGRALLAKDPNTAVFTADVR 138 (274)
T ss_dssp HHHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEE---ESSHHHHHHHHHHHTTCTTEEEEECCTT
T ss_pred HHHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEE---ECChHHHHHHHHhcCCCCCeEEEEeeCC
Confidence 34444445443222 235899999999 9887766654 5667777 88999999987653 35788888875
Q ss_pred cCC-----------CCCCCeeEEEecccccccccC-hHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLP-----------YPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lp-----------f~~~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+ ++..+||+|+++.+++|+.++ ...+++++.++|||||+|+++..
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 421 333589999999999666543 68999999999999999999975
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=110.93 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc-----C---CCeEEEEecc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G---VPALIGVMAS 273 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er-----g---~~~~~~~~d~ 273 (636)
+..+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ + .++.+...|.
T Consensus 88 ~~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 88 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 34566666655555 9999999999999999986 5667777 8899998888754 3 3678888898
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...++++++||+|++.. .++..++.++.++|+|||++++..+
T Consensus 163 ~~~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 163 ADSELPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GGCCCCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred HhcCCCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 88888888999999832 2556899999999999999999976
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-10 Score=117.77 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=82.4
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHH----cCCC--eEEEEecccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGVP--ALIGVMASIR 275 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~e----rg~~--~~~~~~d~~~ 275 (636)
.+.+.+.+.....++. +|||||||+|.++..+++.+. .++++ |+++ +++.|++ ++.. +.+..++...
T Consensus 53 ~~~~~i~~~~~~~~~~--~VLDvGcG~G~~~~~la~~g~~~v~gv---D~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~ 126 (349)
T 3q7e_A 53 TYRNSMFHNRHLFKDK--VVLDVGSGTGILCMFAAKAGARKVIGI---ECSS-ISDYAVKIVKANKLDHVVTIIKGKVEE 126 (349)
T ss_dssp HHHHHHHTCHHHHTTC--EEEEESCTTSHHHHHHHHTTCSEEEEE---ECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhccccCCCC--EEEEEeccchHHHHHHHHCCCCEEEEE---CcHH-HHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence 3444444433334444 899999999999999999854 66666 6663 6666553 3443 8999999999
Q ss_pred CCCCCCCeeEEEeccccc--ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 276 LPYPSRAFDMAHCSRCLI--PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~--h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
+++++++||+|++..+.. +.......++.++.|+|||||+++..
T Consensus 127 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 127 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 999989999999965432 33456688999999999999999854
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=119.12 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEec
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVPALIGVMA 272 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d 272 (636)
...+...+.+.+.+....+ .+|||+|||+|.++..+++.+ ..++.+ |+++.+++.++++ +....+...|
T Consensus 179 ~~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~~~~la~~~~~~~v~~v---D~s~~~l~~a~~~~~~~~~~~~~~~~d 253 (343)
T 2pjd_A 179 DGLDVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSVAFARHSPKIRLTLC---DVSAPAVEASRATLAANGVEGEVFASN 253 (343)
T ss_dssp SSCCHHHHHHHHHSCTTCC--SBCCBTTCTTSHHHHHHHHHCTTCBCEEE---ESBHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CCCcHHHHHHHHhcCcCCC--CeEEEecCccCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 3344455566666643333 389999999999999999874 344555 8888888887654 4556666666
Q ss_pred cccCCCCCCCeeEEEeccccccc----ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIPW----GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h~----~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
... +.+++||+|+++..+++. ..+...+++++.++|||||.+++..+
T Consensus 254 ~~~--~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 254 VFS--EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp TTT--TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccc--cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 544 346799999999888431 22347899999999999999999865
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=110.00 Aligned_cols=118 Identities=18% Similarity=0.064 Sum_probs=86.9
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCC---CCCeeEEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP---SRAFDMAH 287 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~---~~sFDlV~ 287 (636)
...+|||||||+|..+..++.. +..++.+ |+++.++++++++ +. ++.+..++...++.. .++||+|+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLV---DATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 3459999999999999999876 5566677 8899999888754 44 488888888877653 47899999
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
+..+ .+...++.++.++|||||+|++.... ...++ ...+...++.++++..
T Consensus 157 s~a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~-----------~~~~e----~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 157 ARAV-----APLCVLSELLLPFLEVGGAAVAMKGP-----------RVEEE----LAPLPPALERLGGRLG 207 (249)
T ss_dssp EESS-----CCHHHHHHHHGGGEEEEEEEEEEECS-----------CCHHH----HTTHHHHHHHHTEEEE
T ss_pred ECCc-----CCHHHHHHHHHHHcCCCeEEEEEeCC-----------CcHHH----HHHHHHHHHHcCCeEE
Confidence 9543 24578999999999999999886421 11222 2335556667788654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=109.31 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEec
Q 006662 201 ADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMA 272 (636)
Q Consensus 201 ~~~~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d 272 (636)
.+...+.+.+.+. ...+ .+|||+|||+|.++..+++++ ..++++ |+++.+++.|+++ +. .+.+...|
T Consensus 15 ~~~~~~~~~~~l~~~~~~--~~vLDlGcG~G~~~~~l~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d 89 (177)
T 2esr_A 15 SDKVRGAIFNMIGPYFNG--GRVLDLFAGSGGLAIEAVSRGMSAAVLV---EKNRKAQAIIQDNIIMTKAENRFTLLKME 89 (177)
T ss_dssp ---CHHHHHHHHCSCCCS--CEEEEETCTTCHHHHHHHHTTCCEEEEE---CCCHHHHHHHHHHHHTTTCGGGEEEECSC
T ss_pred HHHHHHHHHHHHHhhcCC--CeEEEeCCCCCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence 3444555666654 3333 489999999999999999885 466677 8999999988754 22 36777777
Q ss_pred ccc-CCCCCCCeeEEEecccccccccChHHHHHHHH--hcccCCcEEEEEeC
Q 006662 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~Liis~p 321 (636)
... ++..++.||+|+++..+ +. ......+..+. ++|+|||++++..+
T Consensus 90 ~~~~~~~~~~~fD~i~~~~~~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 90 AERAIDCLTGRFDLVFLDPPY-AK-ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHHHBCSCEEEEEECCSS-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHhHHhhcCCCCEEEECCCC-Cc-chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 665 34445679999998655 22 23356777776 99999999999865
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=107.78 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=83.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCCC---CCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY---PSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lpf---~~~sFDlV~~s~~L~h 294 (636)
+.+|||||||. + .+ |+++.|++.|+++.. .+.+.++|...+++ ++++||+|+|+.+++|
T Consensus 13 g~~vL~~~~g~-----------v---~v---D~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~ 75 (176)
T 2ld4_A 13 GQFVAVVWDKS-----------S---PV---EALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGS 75 (176)
T ss_dssp TSEEEEEECTT-----------S---CH---HHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTC
T ss_pred CCEEEEecCCc-----------e---ee---eCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhh
Confidence 34999999996 1 23 999999999987743 47888899988887 7899999999999966
Q ss_pred cccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhce
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 355 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~W 355 (636)
+..+...+++++.|+|||||+|++..+....... ..|..+ .+++.++++..+|
T Consensus 76 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-~~~~~~-------~~~~~~~l~~aGf 128 (176)
T 2ld4_A 76 TTLHSAEILAEIARILRPGGCLFLKEPVETAVDN-NSKVKT-------ASKLCSALTLSGL 128 (176)
T ss_dssp CCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS-SSSSCC-------HHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHCCCCEEEEEEccccccccc-ccccCC-------HHHHHHHHHHCCC
Confidence 5367899999999999999999997652211110 112222 2445666777777
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=110.33 Aligned_cols=94 Identities=7% Similarity=-0.018 Sum_probs=68.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHH----HHHHHcCCCeEEEEeccccC----CCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQV----QFALERGVPALIGVMASIRL----PYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l----~~A~erg~~~~~~~~d~~~L----pf~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..+++.. ..++++ |+++.++ +.++++ .++.+...|.... +++ ++||+|+++
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gv---D~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAV---EYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEE---CCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 499999999999999998863 456666 8888654 444433 3566666676552 444 789999997
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. . ...+...++.++.|+|||||+|+++.+
T Consensus 134 ~-~--~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 I-A--QKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp C-C--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-c--ChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3 2 122234569999999999999999853
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=118.23 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=101.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC-
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP- 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp- 277 (636)
.+.+.++..+ ...+|||||||+|.++..++++ +..++.+ |+ +.+++.++++ +. .+.+..+|....+
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQLTGQIW---DL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTTCEEEEE---EC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE---EC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 3444444444 1359999999999999999987 4566666 55 3455555432 33 4788888877765
Q ss_pred CCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCch----------hhhHHHHHHH
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTT----------EDLKSEQNGI 346 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~----------e~l~~~~~~i 346 (636)
+..+.||+|++..++++|.+.. ..+++++.++|||||++++..+...-... ..+.... .......+++
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV-TPALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSS-SSHHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CCchHHHhhHHHHhhCCCCCcCCHHHH
Confidence 2345699999999998876322 78999999999999999998642111000 0000000 0001124557
Q ss_pred HHHHHHhceEeeccc---ccEEEEeCCC
Q 006662 347 ETIARSLCWKKLIQK---KDLAIWQKPT 371 (636)
Q Consensus 347 e~la~~l~Wk~v~~~---~~~aIWqKp~ 371 (636)
+++++..+|+.+... ..+.+-+||.
T Consensus 323 ~~ll~~aGf~~~~~~~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 323 AGVVRDAGLAVGERSIGRYTLLIGQRSS 350 (352)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEECCC
T ss_pred HHHHHHCCCceeeeccCceEEEEEecCC
Confidence 788889999877521 1245556663
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-10 Score=118.11 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=79.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ + ..+.+...|.. .+++. +||+|++..
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 243 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVL---DL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA 243 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEe---cC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence 459999999999999999986 4566666 88 7888777653 3 35888888876 56665 899999999
Q ss_pred cccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++++|.++. ..+++++.++|||||++++..+
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 998886432 7899999999999999999875
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-09 Score=109.64 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
.+..++.+.+.+. .+ ..+|||+|||+|.++..+++. +..++++ |+++.+++.++++ +. ++.+...|.
T Consensus 95 te~l~~~~l~~~~-~~--~~~vLDlG~GsG~~~~~la~~~~~~~v~~v---D~s~~~l~~a~~n~~~~~~~~v~~~~~d~ 168 (276)
T 2b3t_A 95 TECLVEQALARLP-EQ--PCRILDLGTGTGAIALALASERPDCEIIAV---DRMPDAVSLAQRNAQHLAIKNIHILQSDW 168 (276)
T ss_dssp HHHHHHHHHHHSC-SS--CCEEEEETCTTSHHHHHHHHHCTTSEEEEE---CSSHHHHHHHHHHHHHHTCCSEEEECCST
T ss_pred HHHHHHHHHHhcc-cC--CCEEEEecCCccHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEEcch
Confidence 4556666666654 23 348999999999999999975 5566666 8999999888755 43 477887776
Q ss_pred ccCCCCCCCeeEEEeccccccc-------------c-----------cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPW-------------G-----------QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~-------------~-----------~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ++++++||+|+++..++.. + .....++.++.++|||||++++..+
T Consensus 169 ~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 169 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 55 3446789999998543221 1 1226788999999999999999853
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.3e-10 Score=117.99 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=80.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccC--CCCCCCeeEEEe
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRL--PYPSRAFDMAHC 288 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~L--pf~~~sFDlV~~ 288 (636)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ + ..+.+..+|.... |++ ++||+|++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIV---DL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEE---EC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEE---eC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 358999999999999999985 5666666 77 7888888765 2 2478888888775 566 78999999
Q ss_pred cccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..++++|.++. ..+|+++.++|||||++++..+
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 99998886433 5889999999999999999864
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-10 Score=107.85 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~ 274 (636)
.....+.+.+...++. +|||||||+|.++..+++.. ..++.+ |+++.+++.++++ + .++.+...+..
T Consensus 64 ~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~ 138 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSI---ERIPELAEKAERTLRKLGYDNVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHHTCTTEEEEESCGG
T ss_pred HHHHHHHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 3445566666555555 99999999999999999874 666677 8898998888754 3 24777777764
Q ss_pred cCCCC-CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYP-SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~-~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. +++ .++||+|++..+++++. .++.++|||||.+++..+
T Consensus 139 ~-~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 L-GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp G-CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred c-CCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEEC
Confidence 3 333 67899999999986654 489999999999999976
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-10 Score=113.10 Aligned_cols=151 Identities=10% Similarity=0.059 Sum_probs=101.6
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc-
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER- 262 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er- 262 (636)
|-.|.+.-...+|..........+.+++ .++. +|||+|||+|.++..+++.+. .++++ |+++.+++.|+++
T Consensus 96 g~~f~~d~~~~~f~~~~~~~~~~l~~~~--~~~~--~VLDlgcG~G~~~~~la~~~~~~V~~v---D~s~~~~~~a~~n~ 168 (278)
T 2frn_A 96 GIKYKLDVAKIMFSPANVKERVRMAKVA--KPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAI---EKDPYTFKFLVENI 168 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHC--CTTC--EEEETTCTTTTTHHHHHHHTCCEEEEE---CCCHHHHHHHHHHH
T ss_pred CEEEEEEccceeEcCCcHHHHHHHHHhC--CCCC--EEEEecccCCHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHH
Confidence 3344442223444444344444555553 3344 899999999999999999865 46677 9999999888754
Q ss_pred ---CCC--eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchh
Q 006662 263 ---GVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTE 337 (636)
Q Consensus 263 ---g~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e 337 (636)
+.. +.+..+|...++. +++||+|++... .....++.++.++|||||++++....... .
T Consensus 169 ~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----------~ 231 (278)
T 2frn_A 169 HLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPEK-----------L 231 (278)
T ss_dssp HHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG-----------G
T ss_pred HHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEeeccc-----------c
Confidence 432 7788888888776 788999998543 23367899999999999999998642100 0
Q ss_pred hhHHHHHHHHHHHHHhceEeec
Q 006662 338 DLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 338 ~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
......+.+.+.++..+|+...
T Consensus 232 ~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 232 MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ccccHHHHHHHHHHHcCCeeEE
Confidence 0012234567778888886543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=112.31 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=75.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----------C-CCeEEEEecccc-CC--CCCCCe
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----------G-VPALIGVMASIR-LP--YPSRAF 283 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----------g-~~~~~~~~d~~~-Lp--f~~~sF 283 (636)
.+|||||||+|.++..|++. +..++++ |+++.+++.|+++ + .++.+..+|+.. ++ +++++|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~Gi---Dis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGL---EIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEE---ESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEE---ECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 48999999999999999987 4566677 8899998877532 2 358888888876 66 788999
Q ss_pred eEEEecccccccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
|.|++...- +|... ...++.++.++|||||.|++...
T Consensus 125 D~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 999876543 34211 14799999999999999999854
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=111.87 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=79.7
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc-----C-CCeEEEEeccccCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----G-VPALIGVMASIRLP 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er-----g-~~~~~~~~d~~~Lp 277 (636)
.+.+.+...++. +|||+|||+|.++..+++. +..++++ |+++.+++.|+++ + .++.+...|... +
T Consensus 101 ~~~~~~~~~~~~--~VLD~G~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~ 174 (275)
T 1yb2_A 101 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVV---ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-F 174 (275)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEE---CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-C
T ss_pred HHHHHcCCCCcC--EEEEecCCCCHHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-c
Confidence 445555555555 9999999999999999987 6677777 8899999888755 3 357888888766 6
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++. . +++..++.++.++|||||++++..+
T Consensus 175 ~~~~~fD~Vi~~-----~-~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 175 ISDQMYDAVIAD-----I-PDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CCSCCEEEEEEC-----C-SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CcCCCccEEEEc-----C-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 677899999982 2 3667899999999999999999976
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=112.12 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCC----CeEEEEeccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASI 274 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~----~~~~~~~d~~ 274 (636)
.+..++.+.+.+... ....+|||+|||+|.++..+++. +..++++ |+++.+++.++++.. ++.+..+|..
T Consensus 14 ~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 89 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAV---DLSMDALAVARRNAERFGAVVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEE---ECC-------------------CCHHHHH
T ss_pred HHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHHHHhCCceEEEEcchH
Confidence 344556666666431 23349999999999999999998 4456666 888888888875532 3555666655
Q ss_pred cCCCCC-----CCeeEEEeccccccccc------C-------------------hHHHHHHHHhcccCCcE-EEEEe
Q 006662 275 RLPYPS-----RAFDMAHCSRCLIPWGQ------Y-------------------DGLYLIEVDRVLRPGGY-WILSG 320 (636)
Q Consensus 275 ~Lpf~~-----~sFDlV~~s~~L~h~~~------d-------------------~~~~L~el~RvLKPGG~-Liis~ 320 (636)
. ++++ ++||+|+++..+++... . ...+++++.++|||||+ +++..
T Consensus 90 ~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 90 E-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp H-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred h-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 5 5554 89999999755422110 0 05678899999999999 55553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-10 Score=112.07 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=69.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCch-HHHHHHH---HHc----CC-CeEEEEeccccCCCC-CCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTH-EAQVQFA---LER----GV-PALIGVMASIRLPYP-SRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis-~a~l~~A---~er----g~-~~~~~~~d~~~Lpf~-~~sFDlV~ 287 (636)
.+|||||||+|.++..|+++ +..++++ |++ +.+++.| +++ +. ++.+..++...+|.. .+.+|.|+
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~Gv---D~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGI---DPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEE---CSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 48999999999999999954 5566666 888 6666555 432 33 588888898888632 25677776
Q ss_pred ecccc----cccccChHHHHHHHHhcccCCcEEEEE
Q 006662 288 CSRCL----IPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 288 ~s~~L----~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++... .+...+...++.++.|+|||||+|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 65432 112223357899999999999999994
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=107.32 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=83.7
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-C-eEEEEecccc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-P-ALIGVMASIR 275 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~-~~~~~~d~~~ 275 (636)
...+.+.+...++. +|||+|||+|.++..+++. +..++++ |+++.+++.|+++ +. + +.+...|...
T Consensus 82 ~~~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 82 AALIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVSY---EIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred HHHHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEEE---ecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 34566666655555 9999999999999999988 5677777 8899999888765 43 3 7888888764
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++++||+|++.. +++..++.++.++|||||++++..+
T Consensus 157 -~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 157 -GIEEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp -CCCCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred -ccCCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 37788999999832 3557899999999999999999876
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=116.39 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHH----cCC--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~e----rg~--~~~~~~~d~~ 274 (636)
+.+.+.+.+.+...++. +|||||||+|.++..+++++. .++++ |++ .+++.|++ ++. .+.+..++..
T Consensus 49 ~~~~~~i~~~~~~~~~~--~VLDlGcGtG~ls~~la~~g~~~V~gv---D~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 122 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGK--TVLDVGTGSGILAIWSAQAGARKVYAV---EAT-KMADHARALVKANNLDHIVEVIEGSVE 122 (376)
T ss_dssp HHHHHHHHTTTTTTTTC--EEEEESCTTTHHHHHHHHTTCSEEEEE---ESS-TTHHHHHHHHHHTTCTTTEEEEESCGG
T ss_pred HHHHHHHHhccccCCCC--EEEEeccCcCHHHHHHHhcCCCEEEEE---ccH-HHHHHHHHHHHHcCCCCeEEEEECchh
Confidence 44555555544444444 999999999999999999876 66666 666 66666543 343 3789999999
Q ss_pred cCCCCCCCeeEEEecccccccc--cChHHHHHHHHhcccCCcEEEEEe
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWG--QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~--~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.++++ ++||+|++..+.+... .....++.++.++|||||+++++.
T Consensus 123 ~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 123 DISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp GCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 88877 8899999966442222 345789999999999999998864
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-10 Score=122.80 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=84.4
Q ss_pred CcEEEEeCCC------CcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCC------CCCe
Q 006662 219 IRTAIDTGCG------VASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP------SRAF 283 (636)
Q Consensus 219 ~r~VLDIGCG------tG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~------~~sF 283 (636)
..+||||||| +|..+..++++ +..++++ |+++.+. ....++.+.++|...+|+. +++|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GV---DiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sF 289 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGL---DIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPF 289 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEE---ESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEE---ECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCc
Confidence 3589999999 77666666654 4455555 5555542 2345789999999988877 7899
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC-CCccccccCCCCchhhhHHHHHHHHHHHHHhceEe
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP-VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~-~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~ 357 (636)
|+|+|.. . |+..+...+|+++.|+|||||+|++.... ..|... .+-...........+.++++...+.|+.
T Consensus 290 DlVisdg-s-H~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f-~G~~~~~~~~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 290 DIVIDDG-S-HINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGF-GGQADPQECSGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp EEEEECS-C-CCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBT-TCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred cEEEECC-c-ccchhHHHHHHHHHHhcCCCeEEEEEecccccCccc-CCCccCCcchhHHHHHHHHHHHHhcccc
Confidence 9999964 3 44456789999999999999999998542 222221 1111101122334455666666665543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-10 Score=116.92 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHH----cCC--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~e----rg~--~~~~~~~d~~ 274 (636)
..+.+.+.+.+...++. +|||||||+|.++..+++.+. .++++ |+++ +++.|++ .+. .+.+...+..
T Consensus 36 ~~y~~~i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~~v---D~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~ 109 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDK--IVLDVGCGSGILSFFAAQAGARKIYAV---EAST-MAQHAEVLVKSNNLTDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHHHTGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEE---ECST-HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhccccCCcC--EEEEcCCCccHHHHHHHhCCCCEEEEE---CCHH-HHHHHHHHHHHcCCCCcEEEEEcchh
Confidence 44566677666555555 999999999999999998854 56666 5553 5555543 343 5888888888
Q ss_pred cCCCCCCCeeEEEecccccccccC-hHHHHHHHHhcccCCcEEEEEe
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~Liis~ 320 (636)
.++++ ++||+|++..+++|+... ....+.++.++|||||.+++..
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 87766 579999999887777533 3678889999999999998753
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=110.27 Aligned_cols=145 Identities=13% Similarity=0.132 Sum_probs=86.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEe-ccccC---CCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVM-ASIRL---PYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~-d~~~L---pf~~ 280 (636)
+.+.+.+... ....+|||||||+|.++..|++++. .++++ |+++.|++.|+++...+..... +...+ .++.
T Consensus 26 ~~~L~~~~~~-~~g~~VLDiGcGtG~~t~~la~~g~~~V~gv---Dis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (232)
T 3opn_A 26 EKALKEFHLE-INGKTCLDIGSSTGGFTDVMLQNGAKLVYAL---DVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ 101 (232)
T ss_dssp HHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHTTCSEEEEE---CSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS
T ss_pred HHHHHHcCCC-CCCCEEEEEccCCCHHHHHHHhcCCCEEEEE---cCCHHHHHHHHHhCccccccccceEEEeCHhHcCc
Confidence 3444444332 2234899999999999999999874 66677 8888888887776544332211 11111 1122
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccc-----cCCCCchhhhHHHHHHHHHHHHHhce
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHW-----KGWNRTTEDLKSEQNGIETIARSLCW 355 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~-----~~W~~t~e~l~~~~~~ie~la~~l~W 355 (636)
..||.+.+..++.++ ..++.++.|+|||||+|++...+ .+...+ .+.-+.........+++.++++..+|
T Consensus 102 ~~~d~~~~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~~p-~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf 176 (232)
T 3opn_A 102 GRPSFTSIDVSFISL----DLILPPLYEILEKNGEVAALIKP-QFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGF 176 (232)
T ss_dssp CCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEECH-HHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTE
T ss_pred CCCCEEEEEEEhhhH----HHHHHHHHHhccCCCEEEEEECc-ccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCC
Confidence 224555444444333 57999999999999999997421 111110 11111222333456678888999999
Q ss_pred Eeec
Q 006662 356 KKLI 359 (636)
Q Consensus 356 k~v~ 359 (636)
+.+.
T Consensus 177 ~v~~ 180 (232)
T 3opn_A 177 SVKG 180 (232)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-10 Score=115.21 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=84.0
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC---EEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALER----GV-PALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v---~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~ 274 (636)
...+.+.+.+...++. +|||||||+|.++..+++.+. .++++ |+++.+++.|+++ +. ++.+...|..
T Consensus 62 ~~~~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~g~~~v~~~~~d~~ 136 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSV---EYSRKICEIAKRNVERLGIENVIFVCGDGY 136 (317)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCeEEEECChh
Confidence 4556677777666655 999999999999999998733 36666 8888998888755 33 4788888887
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+.++++||+|++..++++.. .++.++|||||.+++...
T Consensus 137 ~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 137 YGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred hccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 7655567899999999986654 578899999999999864
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=116.11 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=82.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf 278 (636)
.+.+.++..++ .+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ +. .+.+...|... ++
T Consensus 173 ~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 245 (374)
T 1qzz_A 173 APADAYDWSAV--RHVLDVGGGNGGMLAAIALRAPHLRGTLV---EL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL 245 (374)
T ss_dssp HHHHTSCCTTC--CEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHHhCCCCCC--CEEEEECCCcCHHHHHHHHHCCCCEEEEE---eC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC
Confidence 44444444433 49999999999999999987 4666676 88 7888887653 33 47888888754 44
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+. .||+|++..++++|.+.. ..+++++.++|||||++++..+
T Consensus 246 ~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 246 PV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp SC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 44 399999999998776332 4899999999999999999865
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=114.48 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=79.7
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc------CCCeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er------g~~~~~~~~d~~~L 276 (636)
...+.+.++... .+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ ...+.+...|...
T Consensus 157 ~~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 228 (334)
T 2ip2_A 157 FHEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPSARGVML---DR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ- 228 (334)
T ss_dssp HHHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTTCEEEEE---EC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-
T ss_pred HHHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCCCEEEEe---Cc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-
Confidence 344555544433 59999999999999999987 4444444 55 4555555443 2357888888766
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+++ ++||+|++..++++|.+.. ..+++++.++|||||++++..+
T Consensus 229 ~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 229 EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 555 6799999999998886332 4899999999999999999865
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=114.79 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=83.2
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
.+.+.+.++..++ .+|||||||+|.++..++++ +..++.+ |+ +.+++.|+++ +. .+.+...|....
T Consensus 179 ~~~l~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 179 IQLLLEEAKLDGV--KKMIDVGGGIGDISAAMLKHFPELDSTIL---NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHHHCCCTTC--CEEEEESCTTCHHHHHHHHHCTTCEEEEE---EC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred HHHHHHhcCCCCC--CEEEEECCcccHHHHHHHHHCCCCeEEEE---ec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence 3455555554443 49999999999999999987 4556666 66 6666666543 33 388898998887
Q ss_pred CCCCCCeeEEEecccccccccC-hHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++. |+|++..++++|.++ ...+++++.++|||||++++...
T Consensus 253 ~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 253 SYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 77654 999999999888643 47899999999999999988763
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=105.26 Aligned_cols=109 Identities=14% Similarity=0.009 Sum_probs=80.5
Q ss_pred HHHHHHHhhccCC-CCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 204 YIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~-g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
+.+.+.+.+...+ ....+|||+|||+|.++..++.. +..++++ |+++.+++.++++ +. ++.+...+...
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 126 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLL---DSLGKRVRFLRQVQHELKLENIEPVQSRVEE 126 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHTTCSSEEEEECCTTT
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCeEEEecchhh
Confidence 4444444443221 01238999999999999999986 5566666 8888888888654 33 37888888777
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ +.++||+|++.. + .+...++.++.++|+|||++++...
T Consensus 127 ~~-~~~~~D~i~~~~-~----~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 127 FP-SEPPFDGVISRA-F----ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp SC-CCSCEEEEECSC-S----SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred CC-ccCCcCEEEEec-c----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 65 457899999854 2 3557999999999999999999843
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=109.37 Aligned_cols=116 Identities=16% Similarity=0.048 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCc-hHHHHHHHHHcC--------------
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDT-HEAQVQFALERG-------------- 263 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Di-s~a~l~~A~erg-------------- 263 (636)
+.....+.+.+......+. +|||||||+|.++..+++.+. .++++ |+ ++.+++.++++.
T Consensus 63 ~~~~l~~~l~~~~~~~~~~--~vLDlG~G~G~~~~~~a~~~~~~v~~~---D~s~~~~~~~a~~n~~~N~~~~~~~~~~~ 137 (281)
T 3bzb_A 63 GARALADTLCWQPELIAGK--TVCELGAGAGLVSIVAFLAGADQVVAT---DYPDPEILNSLESNIREHTANSCSSETVK 137 (281)
T ss_dssp HHHHHHHHHHHCGGGTTTC--EEEETTCTTSHHHHHHHHTTCSEEEEE---ECSCHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHhcchhcCCC--eEEEecccccHHHHHHHHcCCCEEEEE---eCCCHHHHHHHHHHHHHhhhhhcccccCC
Confidence 3444555555544334444 899999999999999998875 67777 88 788888876542
Q ss_pred -CCeEEEEeccccCC--C----CCCCeeEEEecccccccccChHHHHHHHHhccc---C--CcEEEEEeC
Q 006662 264 -VPALIGVMASIRLP--Y----PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR---P--GGYWILSGP 321 (636)
Q Consensus 264 -~~~~~~~~d~~~Lp--f----~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK---P--GG~Liis~p 321 (636)
..+.+...+..... + ++++||+|+++.++++ ..+...++..+.++|+ | ||.+++...
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 138 RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp -CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 12444433322211 1 3578999999998855 4567899999999999 9 998877643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-10 Score=110.03 Aligned_cols=110 Identities=12% Similarity=0.214 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
.+.+.+.+.++++ + ..+|||+|||+|.++..++.. ++.++.+ |+++.++++++++ |+...+...+..
T Consensus 36 ld~fY~~~~~~l~--~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~---Di~~~~leiar~~~~~~g~~~~v~~~d~~ 108 (200)
T 3fzg_A 36 LNDFYTYVFGNIK--H--VSSILDFGCGFNPLALYQWNENEKIIYHAY---DIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200)
T ss_dssp HHHHHHHHHHHSC--C--CSEEEEETCTTHHHHHHHHCSSCCCEEEEE---CSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred HHHHHHHHHhhcC--C--CCeEEEecCCCCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence 4556666666652 2 348999999999999999877 5566666 9999999998754 555344445554
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.. .+.++||+|+...++++. ++.+..+.++.+.|||||+||-.
T Consensus 109 ~~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 109 SD-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HH-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred cc-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 43 466889999999999666 56667777999999999988665
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=113.99 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=76.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH--Hc--CCCeEEEEeccccCCCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL--ER--GVPALIGVMASIRLPYPS 280 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~--er--g~~~~~~~~d~~~Lpf~~ 280 (636)
.+.+.++..+ ..+|||||||+|.++..++++ +..++.+ |+++. +..+. +. ...+.+..+|.. .+++
T Consensus 175 ~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~-~~~~~~~~~~~~~~v~~~~~d~~-~~~p- 246 (348)
T 3lst_A 175 ILARAGDFPA--TGTVADVGGGRGGFLLTVLREHPGLQGVLL---DRAEV-VARHRLDAPDVAGRWKVVEGDFL-REVP- 246 (348)
T ss_dssp HHHHHSCCCS--SEEEEEETCTTSHHHHHHHHHCTTEEEEEE---ECHHH-HTTCCCCCGGGTTSEEEEECCTT-TCCC-
T ss_pred HHHHhCCccC--CceEEEECCccCHHHHHHHHHCCCCEEEEe---cCHHH-hhcccccccCCCCCeEEEecCCC-CCCC-
Confidence 3444444443 349999999999999999986 4455566 66533 32111 01 124788888875 4555
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|++..++++|.+.. ..+|+++.++|||||+|++...
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 899999999998886333 6899999999999999999864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-09 Score=105.30 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=78.8
Q ss_pred HHHHhhc--cCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----C------CCeEEEEe
Q 006662 207 DIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----G------VPALIGVM 271 (636)
Q Consensus 207 ~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g------~~~~~~~~ 271 (636)
.+.+.+. ..++ .+|||||||+|.++..+++. + ..++++ |+++.+++.++++ + .++.+...
T Consensus 66 ~~l~~l~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 140 (226)
T 1i1n_A 66 YALELLFDQLHEG--AKALDVGSGSGILTACFARMVGCTGKVIGI---DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG 140 (226)
T ss_dssp HHHHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred HHHHHHHhhCCCC--CEEEEEcCCcCHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHhhcccccCCCcEEEEEC
Confidence 4445554 3344 49999999999999999876 3 466666 8888888887643 2 25788888
Q ss_pred ccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 272 d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
|....+...++||+|++...+.++. .++.++|||||+++++.++
T Consensus 141 d~~~~~~~~~~fD~i~~~~~~~~~~-------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 141 DGRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred CcccCcccCCCcCEEEECCchHHHH-------HHHHHhcCCCcEEEEEEec
Confidence 8776655567899999988775543 6889999999999998753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-11 Score=118.45 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=78.6
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
.+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +. ++.+..+|...++ ++++||+|+++..++
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGMRVIAI---DIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CEEEECccccCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 389999999999999999998777777 9999999888654 43 5888888887776 567999999998885
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
+ ..+....+.++.++|+|||++++.
T Consensus 156 ~-~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 G-PDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp S-GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred C-cchhhhHHHHHHhhcCCcceeHHH
Confidence 4 445555778899999999997775
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=109.24 Aligned_cols=101 Identities=10% Similarity=0.033 Sum_probs=76.2
Q ss_pred hccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccc---cCCCCCCC
Q 006662 212 INLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASI---RLPYPSRA 282 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~---~Lpf~~~s 282 (636)
+.+++|. +|||+|||+|.++..+++. + -.+.++ |+++.+++.++++. .++.....+.. ..++..++
T Consensus 73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~av---D~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGV---EFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEE---ECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEE---eCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence 4466676 9999999999999999986 2 345555 88899988876553 34566655543 34566789
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+|++.. +.+.+...++.++.++|||||+++++.
T Consensus 148 vDvVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 148 VDGLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 99998754 333456789999999999999999974
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=117.06 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=76.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
..+|||||||+|.++..++++ ++.++.+ |+ +.+++.+++. ..+.+..+|... +++. ||+|++..++++|.
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINF---DL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS 281 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEe---Ch-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC
Confidence 359999999999999999987 4566666 77 7777776543 458888888766 6664 99999999997775
Q ss_pred cChH--HHHHHHHhcccCCcEEEEEe
Q 006662 297 QYDG--LYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 297 ~d~~--~~L~el~RvLKPGG~Liis~ 320 (636)
++. .+|+++.++|||||++++..
T Consensus 282 -d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 -DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 554 89999999999999999985
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=109.56 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=81.0
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCCC---------eEEEEeccccC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP---------ALIGVMASIRL 276 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~~---------~~~~~~d~~~L 276 (636)
+..++...++ .+|||+|||+|.++..++++. ..++++ |+++.+++.|+++... +.+...|....
T Consensus 28 L~~~~~~~~~--~~VLDlG~G~G~~~l~la~~~~~~~v~gv---Di~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 28 LASLVADDRA--CRIADLGAGAGAAGMAVAARLEKAEVTLY---ERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp HHHTCCCCSC--EEEEECCSSSSHHHHHHHHHCTTEEEEEE---ESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred HHHHhcccCC--CEEEEeCChHhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 4455544443 489999999999999999884 455555 8999999999865322 77888887766
Q ss_pred -------CCCCCCeeEEEeccccccc-----------------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 -------PYPSRAFDMAHCSRCLIPW-----------------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 -------pf~~~sFDlV~~s~~L~h~-----------------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++++||+|+++..+... ......+++++.++|||||+|++..+
T Consensus 103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3567899999998443211 12246889999999999999999865
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=116.71 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=77.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.++++ ..+.+..+|... |++.+ |+|++..++|+|.
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 275 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINF---DL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWS 275 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEE---eh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCC
Confidence 459999999999999999986 5666666 77 6777666543 468888888776 77754 9999999998887
Q ss_pred cCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++. ..+|+++.++|||||++++...
T Consensus 276 ~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 276 DEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 443 5899999999999999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=103.35 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=74.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CCCC--CCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LPYP--SRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lpf~--~~sFDlV~ 287 (636)
.+|||||||+|..+..+++. +..++++ |+++.+++.|+++ +. .+.+..+|... ++.. .++||+|+
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTL---EADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 39999999999999999987 5667777 8899998888755 43 47888888755 3432 34899999
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+... ..+...++.++.++|||||++++...
T Consensus 142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDAD----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECCc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8543 23446899999999999999999754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-09 Score=105.23 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=79.8
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL- 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L- 276 (636)
..+..++...++. +|||||||+|.++..|++ .+..++++ |+++.+++.|+++ +. .+.+..+|....
T Consensus 61 ~~l~~~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (232)
T 3ntv_A 61 DLIKQLIRMNNVK--NILEIGTAIGYSSMQFASISDDIHVTTI---ERNETMIQYAKQNLATYHFENQVRIIEGNALEQF 135 (232)
T ss_dssp HHHHHHHHHHTCC--EEEEECCSSSHHHHHHHTTCTTCEEEEE---ECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCH
T ss_pred HHHHHHHhhcCCC--EEEEEeCchhHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH
Confidence 3444444444444 899999999999999998 35666666 8899998888754 33 588888887553
Q ss_pred C-CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 P-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 p-f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ..+++||+|++... ..+...++.++.++|||||+|++..
T Consensus 136 ~~~~~~~fD~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 136 ENVNDKVYDMIFIDAA----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp HHHTTSCEEEEEEETT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HhhccCCccEEEEcCc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 3 33689999997643 3355789999999999999999864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=111.59 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHH----cCC--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~e----rg~--~~~~~~~d~~ 274 (636)
..+.+.+.+.+...++. +|||||||+|.++..+++.+. .++++ |++ .+++.|++ ++. .+.+...+..
T Consensus 24 ~~y~~ai~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~v---D~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~ 97 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGV---DMS-SIIEMAKELVELNGFSDKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEE---ESS-THHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhhHhhcCCC--EEEEecCccHHHHHHHHHCCCCEEEEE---ChH-HHHHHHHHHHHHcCCCCCEEEEECchh
Confidence 44555565555445555 899999999999999998864 56666 556 35555543 343 4788889998
Q ss_pred cCCCCCCCeeEEEecccccc--cccChHHHHHHHHhcccCCcEEEEE
Q 006662 275 RLPYPSRAFDMAHCSRCLIP--WGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h--~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.+++++++||+|++...... .......++.++.++|||||.++..
T Consensus 98 ~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred hccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 88888889999999754322 2334578999999999999999843
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=107.33 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
......+.+.+...++. +|||||||+|.++..+++.. ..++.+ |+++.+++.|+++ +. ++.+...|. .
T Consensus 77 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~ 150 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTI---ERIPELVEFAKRNLERAGVKNVHVILGDG-S 150 (235)
T ss_dssp HHHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCG-G
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEECCc-c
Confidence 33455666666655555 89999999999999999874 555566 8888888888754 32 477777776 4
Q ss_pred CCCCCC-CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSR-AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~-sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++ .||+|++..++.++. .++.++|||||.+++..+
T Consensus 151 ~~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 151 KGFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp GCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred cCCCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEe
Confidence 555544 499999998885554 478999999999999976
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=115.57 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=77.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
..+|||||||+|.++..++++ +..++.+ |+ +.+++.|++. ..+.+..+|... |++.+ |+|++..++++|.
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNF---DL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWS 273 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEe---cC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCC
Confidence 359999999999999999986 5566666 77 6677666443 468899889877 77754 9999999998886
Q ss_pred cCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++. ..+|+++.++|||||+|++...
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 433 6899999999999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-09 Score=105.61 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=79.4
Q ss_pred HHHHHhhc--cCCCCCcEEEEeCCCCcHHHHHHhhcC-------CEEEEcCcCCchHHHHHHHHHc----C------CCe
Q 006662 206 DDIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSRN-------ILAVSFAPRDTHEAQVQFALER----G------VPA 266 (636)
Q Consensus 206 d~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~~-------v~vv~i~p~Dis~a~l~~A~er----g------~~~ 266 (636)
..+.+.+. ..++. +|||||||+|.++..+++.. ..++++ |+++.+++.|+++ + .++
T Consensus 68 ~~~~~~l~~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~v 142 (227)
T 2pbf_A 68 ALSLKRLINVLKPGS--RAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGL---ERVKDLVNFSLENIKRDKPELLKIDNF 142 (227)
T ss_dssp HHHHHHHTTTSCTTC--EEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEE---ESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred HHHHHHHHhhCCCCC--EEEEECCCCCHHHHHHHHHhcccCCCCCEEEEE---eCCHHHHHHHHHHHHHcCccccccCCE
Confidence 34444442 33444 99999999999999999864 366677 8888888888754 2 357
Q ss_pred EEEEeccccCC----CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 267 LIGVMASIRLP----YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 267 ~~~~~d~~~Lp----f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+...|..... ...++||+|++...+.+. +.++.++|||||++++..+
T Consensus 143 ~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 143 KIIHKNIYQVNEEEKKELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp EEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred EEEECChHhcccccCccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 88888877755 556789999998887543 3788999999999999865
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=113.17 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=80.4
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf 278 (636)
.+.+.++..++ .+|||||||+|.++..++++ ++.++++ |+ +.+++.|+++ +. .+.+...|... ++
T Consensus 174 ~l~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 246 (360)
T 1tw3_A 174 APAAAYDWTNV--RHVLDVGGGKGGFAAAIARRAPHVSATVL---EM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL 246 (360)
T ss_dssp HHHHHSCCTTC--SEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHHhCCCccC--cEEEEeCCcCcHHHHHHHHhCCCCEEEEe---cC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC
Confidence 34444444444 49999999999999999987 4566666 65 5666666543 33 57888888754 44
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+. .||+|++..++++|.+.. ..+++++.++|||||++++..+.
T Consensus 247 ~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 247 PR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp SS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 44 499999999998876332 58999999999999999998763
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=106.94 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=71.3
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHH----HHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQ----VQFALERGVPALIGVMASIR---LPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~----l~~A~erg~~~~~~~~d~~~---Lpf~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..|+++ +..++++ |+++.+ ++.|+++ .++.+..+|... +++.+++||+|++.
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gv---D~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAV---EFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEE---CCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 49999999999999999987 2566666 888664 4444443 567888888766 45567899999995
Q ss_pred ccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ..+. ..++.++.++|||||+++++..
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 43 2233 5568899999999999999754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-09 Score=104.38 Aligned_cols=105 Identities=18% Similarity=0.081 Sum_probs=82.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYP 279 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lpf~ 279 (636)
..+.+.+...++. +|||+|||+|.++..+++.+..++.+ |+++.+++.|+++ + ..+.+...|.....++
T Consensus 81 ~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 81 FYIALKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWTF---EAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---CSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred HHHHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEEE---ecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence 3555566555555 99999999999999999886666677 8899999888764 3 3577777777664436
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|++.. +++..++.++.++|||||.+++..+
T Consensus 156 ~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 156 EGIFHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TTCBSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCcccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 67899999832 3566889999999999999999976
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=108.63 Aligned_cols=114 Identities=11% Similarity=-0.055 Sum_probs=77.9
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcC--C-------C----
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG--V-------P---- 265 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg--~-------~---- 265 (636)
..++.+.+.+.. ....+|||+|||+|.++..+++. +..++++ |+++.+++.|+++. . .
T Consensus 38 ~l~~~~l~~~~~--~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gv---Dis~~~l~~A~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1o9g_A 38 EIFQRALARLPG--DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIAS---DVDPAPLELAAKNLALLSPAGLTARELER 112 (250)
T ss_dssp HHHHHHHHTSSC--CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEE---ESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhccc--CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEE---ECCHHHHHHHHHHHHHhhhccccccchhh
Confidence 344444443321 23458999999999999999876 3445555 88999988887431 1 1
Q ss_pred ---------------------eE-------------EEEeccccCCC-----CCCCeeEEEeccccccccc--------C
Q 006662 266 ---------------------AL-------------IGVMASIRLPY-----PSRAFDMAHCSRCLIPWGQ--------Y 298 (636)
Q Consensus 266 ---------------------~~-------------~~~~d~~~Lpf-----~~~sFDlV~~s~~L~h~~~--------d 298 (636)
+. +...|...... ..++||+|+|+..+++... .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~ 192 (250)
T 1o9g_A 113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP 192 (250)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccH
Confidence 33 77777655321 3458999999876644332 1
Q ss_pred hHHHHHHHHhcccCCcEEEEEeC
Q 006662 299 DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 299 ~~~~L~el~RvLKPGG~Liis~p 321 (636)
...++.++.++|+|||+++++..
T Consensus 193 ~~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 193 VAGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHHhcCCCcEEEEeCc
Confidence 25899999999999999999644
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.9e-10 Score=110.64 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=72.8
Q ss_pred cEEEEeCCCCcHHHHHHhhc------CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPS-RAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L---pf~~-~sFDlV~~s 289 (636)
.+|||||||+|..+..|++. +..++++ |+++.+++.|+....++.+..+|.... ++.. .+||+|++.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gv---D~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGI---DRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEE---ESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEE---eCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 38999999999999999886 5566666 667777666654445688888888774 5433 479999986
Q ss_pred ccccccccChHHHHHHHHh-cccCCcEEEEEeC
Q 006662 290 RCLIPWGQYDGLYLIEVDR-VLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~R-vLKPGG~Liis~p 321 (636)
.. | .+...++.++.| +|||||+|++...
T Consensus 160 ~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 160 NA--H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SS--C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred Cc--h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 54 3 256789999998 9999999999753
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.5e-09 Score=105.17 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=82.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
..+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+.+...|....
T Consensus 102 ~~i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 102 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAY---EKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEE---CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 4555666655555 9999999999999999987 4566777 8899999888765 33 577777777665
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++.. +++..++.++.++|+|||.+++..+
T Consensus 177 -~~~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 177 -FDEKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp -CSCCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred -ccCCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6677899999842 3556899999999999999999975
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=104.30 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=98.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhcccccc---CCCC-CccceeeeccccccC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM---STYP-RTYDLIHADSIFSLY 552 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~---~~yp-~t~Dl~H~~~~fs~~ 552 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.+++.+.....-.+.+ ...+ .+||+|.+..++.
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-- 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-- 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh--
Confidence 48999999999999999999865 6677788888999999996544433111222 2234 5699999988777
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------------------------HHHHHHHHHHhcCCCceEE
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRDDV--------------------------------DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------------------------~~~~~~~~~~~~~~W~~~~ 600 (636)
..+...+|-++-|+|||||++++.+.. -....+.++++.-.+++.-
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 246689999999999999999997531 0457888888888888875
Q ss_pred eccCCCCC---CcceEEEEEec
Q 006662 601 ADHENGPR---QREKILFANKK 619 (636)
Q Consensus 601 ~~~e~~~~---~~~~~l~~~K~ 619 (636)
+.....+. ...-+++++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 206 LQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EECCCCTTCSSCSCEEEEEEEC
T ss_pred EecCCCCCCCCceeEEEEeecC
Confidence 43221111 13456777774
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-09 Score=115.28 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHH-------HHc----C---CC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFA-------LER----G---VP 265 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A-------~er----g---~~ 265 (636)
...+..+.+.+...++. +|||||||+|.++..+++. + ..++++ |+++.+++.| +++ + .+
T Consensus 228 p~~v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~GV---Dis~~~l~~A~~Ml~~ar~~~~~~Gl~~~n 302 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGC---EIMDDASDLTILQYEELKKRCKLYGMRLNN 302 (433)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEE---ECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHhHHHHHHHHHHcCCCCCc
Confidence 34455666666655555 9999999999999999986 3 345666 7777776666 433 4 35
Q ss_pred eEEEEeccccCC--C--CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 266 ALIGVMASIRLP--Y--PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 266 ~~~~~~d~~~Lp--f--~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+..++....+ + ..++||+|+++..+ +.++...+|.++.++|||||.+++..+
T Consensus 303 V~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 303 VEFSLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eEEEEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 677665543221 2 24689999997666 334667889999999999999999854
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=103.64 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=66.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC------------------
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------------------ 277 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------------------ 277 (636)
.+|||+|||+|.++..++++ +..++++ |+++.+ ....+.+..+|....+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gv---D~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGI---DKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEE---ESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEE---eCCccC------CCCCceEEEccccchhhhhhccccccccccchhh
Confidence 48999999999999999976 2444555 444311 1234677888877766
Q ss_pred -------CCCCCeeEEEeccccccccc----Ch-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -------YPSRAFDMAHCSRCLIPWGQ----YD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -------f~~~sFDlV~~s~~L~h~~~----d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++..++ ++.. +. ..++.++.++|||||.|++...
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 567799999998776 4421 11 1378899999999999999753
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=100.46 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=72.6
Q ss_pred EEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC-C-CCCCCeeEEEe
Q 006662 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL-P-YPSRAFDMAHC 288 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L-p-f~~~sFDlV~~ 288 (636)
+|||||||+|..+..|++. +..++.+ |+++.+++.|+++ +. .+.+..+|.... + +++++||+|++
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCI---DPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEE---CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 8999999999999999985 5566777 8899998888654 33 377887776543 2 34689999998
Q ss_pred cccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.... .+...++.++.++|||||++++..
T Consensus 136 d~~~----~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QVSP----MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CCCT----TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cCcH----HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 6432 344679999999999999999964
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-09 Score=104.76 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=77.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-L 276 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-L 276 (636)
.+..++...++. +|||||||+|..+..+++. +..++++ |+++.+++.|+++ +. .+.+..+|... +
T Consensus 49 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 123 (221)
T 3u81_A 49 IMDAVIREYSPS--LVLELGAYCGYSAVRMARLLQPGARLLTM---EINPDCAAITQQMLNFAGLQDKVTILNGASQDLI 123 (221)
T ss_dssp HHHHHHHHHCCS--EEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred HHHHHHHhcCCC--EEEEECCCCCHHHHHHHHhCCCCCEEEEE---eCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH
Confidence 334444333444 8999999999999999984 5666677 8899998888754 33 37888888644 3
Q ss_pred CCC-----CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYP-----SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~-----~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.. .++||+|++.....++. +...++.++ ++|||||++++...
T Consensus 124 ~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 124 PQLKKKYDVDTLDMVFLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp GGTTTTSCCCCCSEEEECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred HHHHHhcCCCceEEEEEcCCcccch-HHHHHHHhc-cccCCCeEEEEeCC
Confidence 322 27899999977664443 334567777 99999999998753
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=104.41 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=81.6
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
...+..++...++. +|||||||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+.+..+|....
T Consensus 43 ~~~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 43 MESLLHLLKMAAPA--RILEIGTAIGYSAIRMAQALPEATIVSI---ERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp HHHHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHCTTCEEEEE---CCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred HHHHHHHHhccCCC--EEEEecCCCcHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 34444555444444 8999999999999999987 5666677 8899999888765 43 477887776653
Q ss_pred -CCC--CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 -PYP--SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 -pf~--~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+.. +++||+|++.... .+...++.++.++|||||.+++..
T Consensus 118 ~~~~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 118 GEKLELYPLFDVLFIDAAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp HHHHTTSCCEEEEEEEGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred HHhcccCCCccEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 332 5789999987654 356789999999999999999974
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-09 Score=108.28 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=74.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccCCC--CCCCeeE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRLPY--PSRAFDM 285 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~Lpf--~~~sFDl 285 (636)
+.+|||||||+|.++..+++. ...++.+ |+++.+++.|+++. ..+.+...|....+. ++++||+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Did~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLV---DIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEE---ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 459999999999999999987 3355555 88999999887653 357888888766543 4789999
Q ss_pred EEecccccccccCh----HHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~p 321 (636)
|++.... ++.+.. ..+++++.++|||||.+++...
T Consensus 173 Ii~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 173 VIIDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEEECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9996654 332222 5889999999999999999864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-09 Score=103.01 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=72.9
Q ss_pred EEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-CC----CCCeeE
Q 006662 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-YP----SRAFDM 285 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-f~----~~sFDl 285 (636)
+|||||||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+.+..++.... + +. .++||+
T Consensus 67 ~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 67 KVIDIGTFTGYSAIAMGLALPKDGTLITC---DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp EEEEECCTTSHHHHHHHTTCCTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred EEEEeCCcchHHHHHHHHhCCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 8999999999999999987 5666677 8899988888654 33 378888776432 2 11 178999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|++... ..+...++.++.++|||||++++...
T Consensus 144 v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 144 IYIDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 996542 33457899999999999999999854
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=99.98 Aligned_cols=94 Identities=6% Similarity=0.009 Sum_probs=70.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCC---CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLP---YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lp---f~~~sFDlV~~s~ 290 (636)
.+|||+|||+|.++..++++ + ..++++ |+++.+++.+.++ ..++.+...|..... ...++||+|++..
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGI---EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEE---ECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 49999999999999999976 2 566666 8888877766543 246788888876531 1235899999864
Q ss_pred cccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
. ..+. ..++.++.++|||||++++..
T Consensus 152 ~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 152 A----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp C----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 2233 455999999999999999983
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-09 Score=102.65 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=77.9
Q ss_pred HHHHHHhhc--cCCCCCcEEEEeCCCCcHHHHHHhhc-C-------CEEEEcCcCCchHHHHHHHHHc----------CC
Q 006662 205 IDDIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR-N-------ILAVSFAPRDTHEAQVQFALER----------GV 264 (636)
Q Consensus 205 id~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~-~-------v~vv~i~p~Dis~a~l~~A~er----------g~ 264 (636)
...+.+.+. ..++. +|||||||+|.++..+++. + ..++.+ |+++.+++.|+++ ..
T Consensus 71 ~~~~~~~l~~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~ 145 (227)
T 1r18_A 71 HAFALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGI---EHQAELVRRSKANLNTDDRSMLDSG 145 (227)
T ss_dssp HHHHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEE---ESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCCC--EEEEECCCccHHHHHHHHhcccccCCccCEEEEE---EcCHHHHHHHHHHHHhcCccccCCC
Confidence 344555552 33444 9999999999999999885 3 356666 8888888887654 23
Q ss_pred CeEEEEeccccCCCCC-CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 265 PALIGVMASIRLPYPS-RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 265 ~~~~~~~d~~~Lpf~~-~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++.+...|... ++++ ++||+|++...+.+.. .++.++|||||++++...
T Consensus 146 ~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 146 QLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred ceEEEECCccc-CCCcCCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEe
Confidence 57788887765 5554 7899999998885543 789999999999999865
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=104.32 Aligned_cols=145 Identities=15% Similarity=0.107 Sum_probs=96.9
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPY 278 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf 278 (636)
..+.+.++.... .+|||||||+|.++..++++ +..++.+ |. +.+++.|+++. ..+.+..+|....|.
T Consensus 169 ~~~~~~~~~~~~--~~v~DvGgG~G~~~~~l~~~~p~~~~~~~---dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~ 242 (353)
T 4a6d_A 169 RSVLTAFDLSVF--PLMCDLGGGAGALAKECMSLYPGCKITVF---DI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242 (353)
T ss_dssp HHHHHSSCGGGC--SEEEEETCTTSHHHHHHHHHCSSCEEEEE---EC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC
T ss_pred HHHHHhcCcccC--CeEEeeCCCCCHHHHHHHHhCCCceeEec---cC-HHHHHHHHHhhhhcccCceeeecCccccCCC
Confidence 344444444443 48999999999999999998 4555555 55 46677776542 357888888776655
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhH---------HHHHHHHH
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLK---------SEQNGIET 348 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~---------~~~~~ie~ 348 (636)
+ .+|+|++..+||+|.++. ..+|+++.+.|+|||.++|...-..-. ...++....-++. ...+++++
T Consensus 243 ~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~-~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ 319 (353)
T 4a6d_A 243 P--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED-RRGPLLTQLYSLNMLVQTEGQERTPTHYHM 319 (353)
T ss_dssp C--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT-SCCCHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred C--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC-CCCCHHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 5 479999999998887444 678999999999999999986422100 0000000001111 12456778
Q ss_pred HHHHhceEeec
Q 006662 349 IARSLCWKKLI 359 (636)
Q Consensus 349 la~~l~Wk~v~ 359 (636)
+++..+|+.+.
T Consensus 320 ll~~AGf~~v~ 330 (353)
T 4a6d_A 320 LLSSAGFRDFQ 330 (353)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHCCCceEE
Confidence 88899998654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-09 Score=110.81 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||||||+|.++..++++ +..++.+ |+ +.+++.|++. ..+.+..+|... +++. ||+|++..++++|.
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~- 260 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVF---DR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT- 260 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC-
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEe---eC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCC-
Confidence 49999999999999999987 5566666 88 7888777553 348888888755 6653 99999999998885
Q ss_pred ChH--HHHHHHHhcccC---CcEEEEEeC
Q 006662 298 YDG--LYLIEVDRVLRP---GGYWILSGP 321 (636)
Q Consensus 298 d~~--~~L~el~RvLKP---GG~Liis~p 321 (636)
++. .+|+++.++||| ||++++..+
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 554 899999999999 999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.1e-09 Score=116.06 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~ 274 (636)
+.+.+.+.+.+...++. +|||||||+|.++..+++.+ ..++++ |+++ +++.|+++ +. .+.+..++..
T Consensus 144 ~~~~~~il~~l~~~~~~--~VLDiGcGtG~la~~la~~~~~~V~gv---D~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~ 217 (480)
T 3b3j_A 144 GTYQRAILQNHTDFKDK--IVLDVGCGSGILSFFAAQAGARKIYAV---EAST-MAQHAEVLVKSNNLTDRIVVIPGKVE 217 (480)
T ss_dssp HHHHHHHHHTGGGTTTC--EEEEESCSTTHHHHHHHHTTCSEEEEE---ECHH-HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhhhhcCCC--EEEEecCcccHHHHHHHHcCCCEEEEE---EcHH-HHHHHHHHHHHcCCCCcEEEEECchh
Confidence 34455565555444444 99999999999999999875 366666 7787 77666543 43 5888888888
Q ss_pred cCCCCCCCeeEEEecccccccccC-hHHHHHHHHhcccCCcEEEEE
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~Liis 319 (636)
.++++ ++||+|+++..++++..+ ....+.++.++|||||++++.
T Consensus 218 ~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 218 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87765 589999998776565422 256777899999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=96.06 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
..+|||+|||+|.++..+++.+. .++++ |+++.+++.|+++..++.+..+|...++ ++||+|+++..++++..
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAF---DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEE---ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 34899999999999999998854 46666 8899999999887657788888888765 68999999998866643
Q ss_pred Ch-HHHHHHHHhcccCCcEEEEE
Q 006662 298 YD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 298 d~-~~~L~el~RvLKPGG~Liis 319 (636)
.. ..++.++.++| |+ +++.
T Consensus 126 ~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp --CHHHHHHHHHHE--EE-EEEE
T ss_pred chhHHHHHHHHHhc--Cc-EEEE
Confidence 22 57899999998 55 4444
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-08 Score=97.98 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p 277 (636)
+..++...++. +|||||||+|.++..+++. +..++++ |+++.+++.|+++ +. .+.+..+|.... +
T Consensus 50 l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 124 (223)
T 3duw_A 50 LQLLVQIQGAR--NILEIGTLGGYSTIWLARGLSSGGRVVTL---EASEKHADIARSNIERANLNDRVEVRTGLALDSLQ 124 (223)
T ss_dssp HHHHHHHHTCS--EEEEECCTTSHHHHHHHTTCCSSCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhCCC--EEEEecCCccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 33333334444 8999999999999999987 5666677 8888888887654 33 378888876442 1
Q ss_pred -CC---CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -YP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -f~---~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ .++||+|++.... .....++.++.++|||||++++...
T Consensus 125 ~~~~~~~~~fD~v~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 125 QIENEKYEPFDFIFIDADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp HHHHTTCCCCSEEEECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred HHHhcCCCCcCEEEEcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 11 2679999986542 2446899999999999999998754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.1e-09 Score=109.41 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHcC----------------CC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG----------------VP 265 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~erg----------------~~ 265 (636)
...+.+.+...++. +|||+|||+|.++..+++. + ..++++ |+++.+++.|+++. .+
T Consensus 94 ~~~~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~ 168 (336)
T 2b25_A 94 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISF---EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 168 (336)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEE---ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEEE---eCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence 34555566555555 9999999999999999986 4 566677 88988888887541 35
Q ss_pred eEEEEeccccC--CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 266 ALIGVMASIRL--PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 266 ~~~~~~d~~~L--pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+...|.... ++++++||+|++... ++..++.++.++|||||.|++..+
T Consensus 169 v~~~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 169 VDFIHKDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp EEEEESCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred eEEEECChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 78888888776 466778999998532 333489999999999999998865
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-09 Score=101.56 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=72.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-CCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-PYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-pf~~~sFDlV~~s 289 (636)
.+|||||||+|..+..+++. +..++.+ |+++.+++.|+++ +. .+.+..++.... +..++ ||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMI---DPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEE---ESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 38999999999999999987 4566666 8899998888754 32 377887777543 54456 9999986
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. ..+...++.++.++|||||++++..
T Consensus 134 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 32 2355789999999999999999874
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=7e-09 Score=109.93 Aligned_cols=113 Identities=17% Similarity=0.015 Sum_probs=85.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
....+..++...++. +|||+|||+|.++..++... ..++++ |+++.+++.|+++ +. .+.+.+.|...
T Consensus 191 la~~l~~~~~~~~~~--~vLD~gcGsG~~~ie~a~~~~~~~~v~g~---Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 191 LAQALLRLADARPGM--RVLDPFTGSGTIALEAASTLGPTSPVYAG---DLDEKRLGLAREAALASGLSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHTTCCTTC--CEEESSCTTSHHHHHHHHHHCTTSCEEEE---ESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred HHHHHHHHhCCCCCC--EEEeCCCCcCHHHHHHHHhhCCCceEEEE---ECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence 444555555555444 89999999999999999864 566666 8888998888754 43 58899999999
Q ss_pred CCCCCCCeeEEEecccccccccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
++.+.+.||+|+++..+.....+ ...++.++.++|||||.+++..+
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 88877889999997654221111 15788999999999999999976
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=105.20 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=80.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf 278 (636)
.+..++...++. +|||+|||+|..+..+++. +..++++ |+++.+++.++++ +. ++.+...|...++.
T Consensus 109 l~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~av---D~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~ 183 (315)
T 1ixk_A 109 YPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAF---DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE 183 (315)
T ss_dssp HHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEE---CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred HHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc
Confidence 344555555555 9999999999999999975 2556666 8899988887654 44 57888888877765
Q ss_pred CCCCeeEEEecc------cccccc-------cC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSR------CLIPWG-------QY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~------~L~h~~-------~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++||+|++.. ++.+.. .+ ...+|.++.++|||||++++++.
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 567899999732 221111 00 14789999999999999999865
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=102.10 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=74.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc------------C-CCeEEEEecccc-CC--CCCC
Q 006662 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER------------G-VPALIGVMASIR-LP--YPSR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er------------g-~~~~~~~~d~~~-Lp--f~~~ 281 (636)
.+|||||||+|.++..+++.+ ..++++ |+++.+++.++++ + .++.+..+|... ++ ++.+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGM---EIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEE---ESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEE---EcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 489999999999999999874 456666 8888888877542 3 368888888775 66 7788
Q ss_pred CeeEEEecccccccccCh--------HHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~p 321 (636)
+||.|+....- .|.... ..++.++.++|+|||+|++...
T Consensus 128 ~~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 128 QLSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp CEEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 99999864321 221100 4799999999999999999753
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-09 Score=121.68 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=80.2
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cC-CCeEEEEeccccC--CCCCCCeeEEEecc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RG-VPALIGVMASIRL--PYPSRAFDMAHCSR 290 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg-~~~~~~~~d~~~L--pf~~~sFDlV~~s~ 290 (636)
.+.+|||||||.|.++..|+++|..++++ |.++.+++.|+. .+ .++.+.+.+++.+ ++++++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~gi---D~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGI---DFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEE---CCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 34589999999999999999999999888 999999988763 34 5688999988877 46788999999999
Q ss_pred cccccccChH--HHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYDG--LYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~~--~~L~el~RvLKPGG~Liis~ 320 (636)
+++|.. ++. ..+..+.+.|+++|..++..
T Consensus 143 ~~ehv~-~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 143 VFHHIV-HLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp CHHHHH-HHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred chhcCC-CHHHHHHHHHHHHHhccccceeeEE
Confidence 998875 453 34556777888888766653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-08 Score=96.37 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=77.0
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-L 276 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-L 276 (636)
.+..++...++. +|||||||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+.+..+|... +
T Consensus 51 ~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 125 (239)
T 2hnk_A 51 FLNILTKISGAK--RIIEIGTFTGYSSLCFASALPEDGKILCC---DVSEEWTNVARKYWKENGLENKIFLKLGSALETL 125 (239)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTCHHHHHHHHHSCTTCEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHhhCcC--EEEEEeCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHH
Confidence 344444444444 8999999999999999987 4566666 8888888888755 33 26777776543 1
Q ss_pred C--------------CCC--CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 P--------------YPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 p--------------f~~--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ |++ ++||+|++.... .+...++.++.++|||||++++..
T Consensus 126 ~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhhcccccccccccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 333 789999987543 234689999999999999999974
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-08 Score=100.64 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=72.5
Q ss_pred HHHHHhhc---cCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHH----HHHHHcCCCeEEEEecccc
Q 006662 206 DDIGKLIN---LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQV----QFALERGVPALIGVMASIR 275 (636)
Q Consensus 206 d~L~~lL~---l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l----~~A~erg~~~~~~~~d~~~ 275 (636)
..+...+. +.++. +|||+|||+|.++..+++. .-.++++ |+++.++ +.++++ .++.+..+|...
T Consensus 63 ~~ll~~l~~~~l~~g~--~VLDlG~GtG~~t~~la~~v~~~G~V~av---D~s~~~l~~l~~~a~~r-~nv~~i~~Da~~ 136 (232)
T 3id6_C 63 GAILKGLKTNPIRKGT--KVLYLGAASGTTISHVSDIIELNGKAYGV---EFSPRVVRELLLVAQRR-PNIFPLLADARF 136 (232)
T ss_dssp HHHHTTCSCCSCCTTC--EEEEETCTTSHHHHHHHHHHTTTSEEEEE---ECCHHHHHHHHHHHHHC-TTEEEEECCTTC
T ss_pred HHHHhhhhhcCCCCCC--EEEEEeecCCHHHHHHHHHhCCCCEEEEE---ECcHHHHHHHHHHhhhc-CCeEEEEccccc
Confidence 34444443 44555 9999999999999999876 2355555 7777664 444444 467888888754
Q ss_pred CC---CCCCCeeEEEecccccccccChH-HHHHHHHhcccCCcEEEEEeC
Q 006662 276 LP---YPSRAFDMAHCSRCLIPWGQYDG-LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lp---f~~~sFDlV~~s~~L~h~~~d~~-~~L~el~RvLKPGG~Liis~p 321 (636)
.. ...++||+|++.... ++.. .++..+.++|||||+|+++..
T Consensus 137 ~~~~~~~~~~~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 137 PQSYKSVVENVDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp GGGTTTTCCCEEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred chhhhccccceEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 32 124689999997543 3443 445566779999999999854
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=107.04 Aligned_cols=114 Identities=9% Similarity=0.003 Sum_probs=81.0
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL 276 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L 276 (636)
..+.+.+.+.. .+...+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +. .+.+...|...+
T Consensus 140 ~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga~V~~V---D~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~ 215 (332)
T 2igt_A 140 HWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHV---DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF 215 (332)
T ss_dssp HHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred HHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH
Confidence 33445555531 1223489999999999999999988777777 9999999988754 33 277888876554
Q ss_pred CC----CCCCeeEEEecccc---------cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PY----PSRAFDMAHCSRCL---------IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf----~~~sFDlV~~s~~L---------~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ..++||+|++.... .++..+...++.++.++|+|||+|++...
T Consensus 216 l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 216 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 21 15689999995431 11222346889999999999999888753
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-09 Score=102.88 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=93.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cchhhccccccCC--CCCccceeeecccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMST--YPRTYDLIHADSIFSL 551 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~~~ce~~~~--yp~t~Dl~H~~~~fs~ 551 (636)
...+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++-- +..+. ..+.. ++.+||+|.+.++|..
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITE---GDFLSFEVPTSIDTIVSTYAFHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEES---CCSSSCCCCSCCSEEEEESCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEe---CChhhcCCCCCeEEEEECcchhc
Confidence 467999999999999999998854 67777887788888888732 22222 22222 3389999999888875
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCH----H---------------------------HHHHHHHHHhcCCCceEE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDDV----D---------------------------ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~---------------------------~~~~~~~~~~~~~W~~~~ 600 (636)
..+. ....+|.|+-|+|||||.+++.+.. . ....++++++.-.+++..
T Consensus 119 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 119 LTDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred CChH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 5432 1234999999999999999998521 1 125677778888887665
Q ss_pred eccCCCCCCcceEEEEEec
Q 006662 601 ADHENGPRQREKILFANKK 619 (636)
Q Consensus 601 ~~~e~~~~~~~~~l~~~K~ 619 (636)
.... .-.-++.++|+
T Consensus 198 ~~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 198 TRLN----HFVWVMEATKQ 212 (220)
T ss_dssp EECS----SSEEEEEEEEC
T ss_pred eecc----ceEEEEeehhh
Confidence 5433 23456666664
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-07 Score=99.65 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=77.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhhccccccCC-CC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMST-YP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~~~ce~~~~-yp-~t~Dl~H~~~~ 548 (636)
...+|||+|||.|.++.+|++.+. .|+.+|.+..++..+.++ |+ +-+++ +..+.. .+ .+||+|-++..
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~--~D~~~~~~~~~~fD~Ii~npp 307 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALH--SDVDEALTEEARFDIIVTNPP 307 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEE--CSTTTTSCTTCCEEEEEECCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEE--cchhhccccCCCeEEEEECCc
Confidence 356899999999999999998864 667777776777776654 22 22222 112221 23 79999999888
Q ss_pred cccCCC--CcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHh
Q 006662 549 FSLYKD--RCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITD 592 (636)
Q Consensus 549 fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~ 592 (636)
|..... .-....++-++-|+|||||.++|..+. .....+++...
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 865332 234568999999999999999997543 24445555544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-09 Score=106.49 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=67.1
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC---CCC---CCCee
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL---PYP---SRAFD 284 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L---pf~---~~sFD 284 (636)
..+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ +. .+.+..+|.... +++ +++||
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLAT---EVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCccc
Confidence 458999999999999999876 5666677 8899999888754 33 278888886542 444 26899
Q ss_pred EEEeccccccccc-------------Ch-HHHHHHHHhcccCCcEEEEE
Q 006662 285 MAHCSRCLIPWGQ-------------YD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 285 lV~~s~~L~h~~~-------------d~-~~~L~el~RvLKPGG~Liis 319 (636)
+|+++..+++... .+ ..++.++.|+|||||.+.+.
T Consensus 143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9999866543320 11 24567888999998887665
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-07 Score=97.82 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=74.3
Q ss_pred cceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh----cccc---hhhccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR----gli~---~~~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||+|.++.+|++.. - ..|+.+|.++.++..+.++ |+-. +--.+...+..+| .+||+|-++.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~--~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC--CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 4789999999999999998762 1 2455666666677666543 3321 1002233444555 7999999988
Q ss_pred ccccC--CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHh
Q 006662 548 IFSLY--KDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITD 592 (636)
Q Consensus 548 ~fs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~ 592 (636)
.|... ..+-....+|.++-|+|||||.++|..+. .....++++..
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 87532 22333457899999999999999996432 34555666555
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-09 Score=109.40 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=64.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC-------CCeEEE--EeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG-------VPALIG--VMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg-------~~~~~~--~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..++++ .+.++++ ++ ++..+.++. .++.+. ++|...+| +++||+|+|.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~-----s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKA-----YT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD 155 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEE-----EC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEEC-----ch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence 49999999999999999987 3444444 43 222222221 146777 77887765 6789999997
Q ss_pred ccccccccCh----H---HHHHHHHhcccCCc--EEEEEeC
Q 006662 290 RCLIPWGQYD----G---LYLIEVDRVLRPGG--YWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~----~---~~L~el~RvLKPGG--~Liis~p 321 (636)
.+ ++..++ . .+|.++.++||||| .|++...
T Consensus 156 ~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 156 IG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 66 222221 1 37899999999999 9998754
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-09 Score=99.78 Aligned_cols=118 Identities=15% Similarity=0.225 Sum_probs=83.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +-..+ |.. .+.. +.+||+|.+.++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCCEEEEEEESCG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCCceEEEEcchh
Confidence 45999999999999999988754 667777776777777654 33 22222 222 2222 7899999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------HHHHHHHHHHhcCCCceEEec
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--------------DILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~~~~~~~~~~~~~~W~~~~~~ 602 (636)
.... .-+...+|-++.|+|+|||.+++.+.. -....++++++. |++....
T Consensus 108 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 108 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 7543 235689999999999999998875311 033566777776 8776543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.4e-09 Score=104.75 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=78.7
Q ss_pred hhhccCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCCCccc
Q 006662 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYD 541 (636)
Q Consensus 467 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp~t~D 541 (636)
++..+.. ....+|||+|||.|+++.+|++ .+. +|+.+|.++.++..+.++ |+..-+.-.+..+..+|.+||
T Consensus 56 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 56 ALGKLGL-QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHTTTTC-CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHcCC-CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 3333333 3467899999999999999984 454 677778777888888776 442222222233445679999
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|.+.++|..... -+...+|-|+-|+|||||.+++.+
T Consensus 132 ~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 132 RIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp EEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999888876532 356899999999999999999975
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-09 Score=107.78 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=63.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC-------CCeEEE--EeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG-------VPALIG--VMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg-------~~~~~~--~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||||||+|.++..++++ .+.++++++ ++..+.++. .++.+. ++|+..++ +++||+|+|.
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~------m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd 147 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYT------LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD 147 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEEC------CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECch------hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence 49999999999999999987 344444443 211121111 146777 77877765 6789999997
Q ss_pred ccccccccCh----H---HHHHHHHhcccCCc--EEEEEeC
Q 006662 290 RCLIPWGQYD----G---LYLIEVDRVLRPGG--YWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~----~---~~L~el~RvLKPGG--~Liis~p 321 (636)
.+ +...++ . .+|.++.++||||| .|++...
T Consensus 148 ~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 148 VG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred Cc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 65 222222 1 37899999999999 9999754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-08 Score=104.84 Aligned_cols=129 Identities=15% Similarity=0.055 Sum_probs=90.1
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~ 274 (636)
.....+..+. ..++. +|||+|||+|.++..++..+. .++++ |+++.+++.|+++ +. .+.+.++|..
T Consensus 205 ~la~~l~~~~-~~~~~--~vLD~gCGsG~~~i~~a~~~~~~~v~g~---Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~ 278 (373)
T 3tm4_A 205 SIANAMIELA-ELDGG--SVLDPMCGSGTILIELALRRYSGEIIGI---EKYRKHLIGAEMNALAAGVLDKIKFIQGDAT 278 (373)
T ss_dssp HHHHHHHHHH-TCCSC--CEEETTCTTCHHHHHHHHTTCCSCEEEE---ESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred HHHHHHHHhh-cCCCC--EEEEccCcCcHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 3444455554 34444 899999999999999999865 56666 8899999888754 44 5789999999
Q ss_pred cCCCCCCCeeEEEeccccccccc------Ch-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHH
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQ------YD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~------d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie 347 (636)
.+++++++||+|+++..+..... +. ..++.++.++| ||.+++..+ . .+.++
T Consensus 279 ~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------~-------~~~~~ 336 (373)
T 3tm4_A 279 QLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------E-------KKAIE 336 (373)
T ss_dssp GGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------C-------HHHHH
T ss_pred hCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------C-------HHHHH
Confidence 99988899999999765422211 11 56788999988 455555433 0 12355
Q ss_pred HHHHHhceEeec
Q 006662 348 TIARSLCWKKLI 359 (636)
Q Consensus 348 ~la~~l~Wk~v~ 359 (636)
+.+...+|+...
T Consensus 337 ~~~~~~G~~~~~ 348 (373)
T 3tm4_A 337 EAIAENGFEIIH 348 (373)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHcCCEEEE
Confidence 667778887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=98.44 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=98.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCCCccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- +..+. |. +.++.-+.+||+|.+.++|....
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~- 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMG- 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCC-
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCC-
Confidence 45899999999999999988854 56667777789999888732 12222 22 22322238999999988777543
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.-+...+|-++-|+|||||.+++.+.. -....++++++...|++.......+ .+...|...|
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~ 194 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA 194 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence 336789999999999999999998521 1357888999999999887665544 4555555554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=101.78 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=99.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCCCccceeeecc-ccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYPRTYDLIHADS-IFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp~t~Dl~H~~~-~fs~~~ 553 (636)
..+|||+|||.|.++..|++... +|+.+|.++.++..+.++.- +..+. |.. .+. ++.+||+|.+.+ +|....
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-DFS-LGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TCC-CSCCEEEEEECTTGGGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-HCC-ccCCcCEEEEcCchhhhcC
Confidence 47899999999999999998854 67777888789999888732 12222 221 222 268999999987 777655
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC----------------------------------------------H------
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDD----------------------------------------------V------ 581 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------------------------------------~------ 581 (636)
+.-+...+|-++.|+|||||.++|.+- .
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 445667899999999999999999520 0
Q ss_pred ---------HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 582 ---------DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 582 ---------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
-..+.++++++.-.+++...... .....+.+++|+
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~---~~~~~~~va~K~ 249 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGG---PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC---CCCceeEEEecC
Confidence 02578899999988887755333 235678999997
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=97.77 Aligned_cols=140 Identities=11% Similarity=0.133 Sum_probs=93.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----c-------cchhh-ccccccCCCCCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L-------IGTYQ-NWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l-------i~~~~-~~ce~~~~yp~t~Dl~H 544 (636)
..+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++- + +..+. |. +....-+.+||+|.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAAT 107 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEEE
Confidence 56999999999999999988631 136677777778888887762 1 22222 22 11111237999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH----------------------HHHHH----HHHhcCCCce
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI----------------------LVKIK----SITDGMEWEG 598 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~----------------------~~~~~----~~~~~~~W~~ 598 (636)
+..++.... .-++..+|-++-|+|||||.+|+....+. ...++ ++++.-.+++
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 988887653 22346899999999999998887643321 12333 7777777887
Q ss_pred EEec---cCCCCCCcceEEEEEec
Q 006662 599 RIAD---HENGPRQREKILFANKK 619 (636)
Q Consensus 599 ~~~~---~e~~~~~~~~~l~~~K~ 619 (636)
.... ....--.+.+|.|++|.
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEecCCccccCCCCeEEEEEecc
Confidence 7552 22222247899999995
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=95.64 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=93.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
....+|||+|||.|.++.+|.+.. . +|+.+|.++.++..+.++ . .-+.-.+.. .++| .+||+|.+..++....
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~-~-~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEK-F-DSVITLSDP-KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHH-C-TTSEEESSG-GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHh-C-CCcEEEeCC-CCCCCCceEEEEEccchhccc
Confidence 346789999999999999999885 2 788888888899999888 2 212211222 4555 7999999988887553
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHH-------------HHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVD-------------ILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-------------~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
+...+|-|+-|+|||||.+++.+... ....++++++ .|+......- + .....+++.|+
T Consensus 90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-~--~~~~~l~~~~~ 160 (170)
T 3i9f_A 90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-T--PYHFGLVLKRK 160 (170)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-S--TTEEEEEEEEC
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-C--CceEEEEEecC
Confidence 56899999999999999999985211 2345666666 5655432221 1 24677887775
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.2e-08 Score=99.98 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
.+.+++.+.+.+...++. +|||+|||+|.++..+++. +..++++ |+++.+++.|+++ +. .+.+...|.
T Consensus 108 te~lv~~~l~~~~~~~~~--~vLDlG~GsG~~~~~la~~~~~~v~~v---Dis~~al~~A~~n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 108 TEELVELALELIRKYGIK--TVADIGTGSGAIGVSVAKFSDAIVFAT---DVSSKAVEIARKNAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp HHHHHHHHHHHHHHHTCC--EEEEESCTTSHHHHHHHHHSSCEEEEE---ESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred HHHHHHHHHHHhcccCCC--EEEEEeCchhHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence 455666676666533433 8999999999999999988 6667777 8999999988754 33 278888887
Q ss_pred ccCCCCCCCe---eEEEeccccccc----------c--------cChHHHHHHHH-hcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAF---DMAHCSRCLIPW----------G--------QYDGLYLIEVD-RVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sF---DlV~~s~~L~h~----------~--------~d~~~~L~el~-RvLKPGG~Liis~p 321 (636)
.. +++ ++| |+|+++.-.+.. . .+...+++++. +.|+|||++++...
T Consensus 183 ~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 183 LE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp TG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred hh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 65 222 478 999997322111 0 11127899999 99999999999754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-08 Score=99.77 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=75.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
.+|||+|||+|.++..+++.. ..++++ |+++.+++.|+++ +. ++.+..+|....+. .++||+|++....
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~v---D~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAI---EKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEE---ECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 399999999999999999873 366667 8888888887653 33 57788888877744 6789999987643
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+...++.++.++|+|||.++++..
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 446789999999999999999854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=105.45 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=80.0
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCCCcc
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTY 540 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp~t~ 540 (636)
.++..+.. ....+|||+|||.|+++.+|++. + .+|+.+|.++.++..+.++ |+-+-++-.+..+..++.+|
T Consensus 63 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 63 LALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHcCC-CCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 34443433 44678999999999999999887 6 3677778877888888776 44222221222223348999
Q ss_pred ceeeeccccccCCCC------cCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 DLIHADSIFSLYKDR------CEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~------c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|.+.++|....+. -..+.+|-++.|+|||||.++|.+
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999888765332 456899999999999999999975
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=96.09 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=64.2
Q ss_pred cEEEEeCCCCcHHHHHHhhc-C----------CEEEEcCcCCchHHHHHHHHHcCCCeEEE-EeccccCC--------CC
Q 006662 220 RTAIDTGCGVASWGAYLMSR-N----------ILAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP--------YP 279 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~----------v~vv~i~p~Dis~a~l~~A~erg~~~~~~-~~d~~~Lp--------f~ 279 (636)
.+|||+|||+|.++..++++ + ..++++ |+++.+ ....+.+. ..|....+ ++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~v---D~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV---DLLHIF------PLEGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEE---CSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEE---echhcc------cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence 49999999999999999987 3 556666 555421 11235666 66654432 34
Q ss_pred CCCeeEEEeccccc---ccccCh-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLI---PWGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~---h~~~d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|+|..+++ ++..+. ..++.++.++|||||.|++...
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 56899999966442 221222 3789999999999999999864
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=105.27 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=78.1
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCC--cHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCC-----CeEEEEec
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGV--ASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMA 272 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGt--G~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~-----~~~~~~~d 272 (636)
.+.....+++.... ..+.|||||||+ +..+..++++ +..++.+ |.++.|++.|+++.. .+.+..+|
T Consensus 64 ~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~V---D~sp~mLa~Ar~~l~~~~~~~~~~v~aD 139 (277)
T 3giw_A 64 DWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYV---DNDPIVLTLSQGLLASTPEGRTAYVEAD 139 (277)
T ss_dssp HHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEE---ECCHHHHHTTHHHHCCCSSSEEEEEECC
T ss_pred HHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEE---eCChHHHHHHHHHhccCCCCcEEEEEec
Confidence 34444455553222 246899999997 3344444443 5677777 999999998876521 37888888
Q ss_pred cccCC----CC--CCCee-----EEEecccccccccC---hHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLP----YP--SRAFD-----MAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lp----f~--~~sFD-----lV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~Liis~p 321 (636)
...++ .+ .+.|| .|+++.+| ||..+ +..+++++.+.|+|||+|+++..
T Consensus 140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avL-H~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 140 MLDPASILDAPELRDTLDLTRPVALTVIAIV-HFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TTCHHHHHTCHHHHTTCCTTSCCEEEEESCG-GGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred ccChhhhhcccccccccCcCCcchHHhhhhH-hcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 76642 11 34555 57788888 55445 46899999999999999999964
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=104.65 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=74.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC--CCCCCCeeE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL--PYPSRAFDM 285 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L--pf~~~sFDl 285 (636)
..+|||||||+|.++..++++ ...++.+ |+++.+++.|+++. ..+.+..+|.... .+++++||+
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~V---Dis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMC---EIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 459999999999999999987 3455566 88999999887642 3578888886553 234678999
Q ss_pred EEecccccccc--cC--hHHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPWG--QY--DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~~--~d--~~~~L~el~RvLKPGG~Liis~ 320 (636)
|++.... ++. .+ ...+++++.++|+|||.|++..
T Consensus 198 Ii~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 198 VIVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9986432 221 11 2689999999999999999974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-08 Score=105.16 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCC--CeEEEEeccccCC
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~--~~~~~~~d~~~Lp 277 (636)
.+.|.+.|.+.....+++ +|||||||+|.++...++.|. .+++++..++...+.+.++.++. .+.+...+...+.
T Consensus 68 t~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~ 145 (376)
T 4hc4_A 68 TDAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE 145 (376)
T ss_dssp HHHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred HHHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec
Confidence 355655565433333455 899999999999988888863 45555332233334444555554 4788888888887
Q ss_pred CCCCCeeEEEeccccc--ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 278 YPSRAFDMAHCSRCLI--PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~--h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++ +.||+|+|...-. ........++....|+|||||.++-+
T Consensus 146 lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 146 LP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred CC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 77 5799999843221 22223478889999999999998764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-09 Score=103.23 Aligned_cols=97 Identities=11% Similarity=0.191 Sum_probs=75.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCCCC-CccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ +..+. |..+-..++| .+||+|.+.++|....
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~- 115 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD- 115 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC-
Confidence 57899999999999999988754 456778777899998888 33332 2222233566 8999999988887654
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-++..+|-++.|+|||||++++..
T Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 116 PERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp GGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2356899999999999999999974
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=98.34 Aligned_cols=99 Identities=18% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhhccccccCCC--CCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY--PRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~~~ce~~~~y--p~t~Dl~H~~~~ 548 (636)
....+|||+|||.|.++.+|++.. .+|+.+|.++.++..+.++.- +..++ ..+..+ +.+||+|.+.++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAA---TDILQFSTAELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEE---CCTTTCCCSCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEE---cchhhCCCCCCccEEEEccH
Confidence 567899999999999999999884 478888888888988888742 22222 222223 489999999988
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|....+.-.+..+|-++.|+|||||.+++.+
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8766655455678999999999999999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=107.65 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=75.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||||||+|.++..++++ +..++.+ |+ +.+++.+++. ..+.+...|... +++ .||+|++..++++|.
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~- 265 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVF---DQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN- 265 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEE---EC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC-
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEe---cc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC-
Confidence 48999999999999999987 4566666 77 4677666442 347888888766 666 499999999997775
Q ss_pred ChH--HHHHHHHhcccC---CcEEEEEeC
Q 006662 298 YDG--LYLIEVDRVLRP---GGYWILSGP 321 (636)
Q Consensus 298 d~~--~~L~el~RvLKP---GG~Liis~p 321 (636)
++. .+|+++.++||| ||++++..+
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 554 999999999999 999999864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-08 Score=96.54 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=72.2
Q ss_pred EEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc----CCCCC--CCeeE
Q 006662 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR----LPYPS--RAFDM 285 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~----Lpf~~--~sFDl 285 (636)
+|||||||+|..+..+++. +..++.+ |+++.+++.|+++ +. .+.+..++... ++..+ ++||+
T Consensus 75 ~vLdiG~G~G~~~~~la~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 75 QVLEIGVFRGYSALAMALQLPPDGQIIAC---DQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred EEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 8999999999999999986 4566666 8888888888654 33 36777777532 33333 78999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|++... ..+...++.++.++|||||++++...
T Consensus 152 V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 152 IFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 998653 23447899999999999999999753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.1e-08 Score=93.44 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=97.8
Q ss_pred hcchhhHHHHHHHHHHHHH------------hhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchH
Q 006662 448 EMFREDTALWKKRVTYYKS------------VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 515 (636)
Q Consensus 448 ~~f~~d~~~w~~~v~~y~~------------~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~ 515 (636)
+.|.++...|......|.. ++..+.......+|||+|||.|.++..|. ..|..+-+.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------- 97 (215)
T 2zfu_A 27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL-------- 97 (215)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS--------
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC--------
Confidence 4466677777765555543 22222211345789999999999999985 44544444332
Q ss_pred HHHhhcccchhh-ccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHH
Q 006662 516 VIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSI 590 (636)
Q Consensus 516 ~~~eRgli~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~ 590 (636)
. +.+.. |. +.+ ++| .+||+|.+..++. . -+...+|.|+.|+|+|||.+++.+... ....+.++
T Consensus 98 -----~-~~~~~~d~-~~~-~~~~~~fD~v~~~~~l~---~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 165 (215)
T 2zfu_A 98 -----D-PRVTVCDM-AQV-PLEDESVDVAVFCLSLM---G-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRA 165 (215)
T ss_dssp -----S-TTEEESCT-TSC-SCCTTCEEEEEEESCCC---S-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHH
T ss_pred -----C-ceEEEecc-ccC-CCCCCCEeEEEEehhcc---c-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHH
Confidence 1 11111 11 222 344 7999999988773 1 467899999999999999999987554 45778888
Q ss_pred HhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 591 TDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 591 ~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
++...++....+... ..-.+++++|.
T Consensus 166 l~~~Gf~~~~~~~~~---~~~~~~~~~k~ 191 (215)
T 2zfu_A 166 VTKLGFKIVSKDLTN---SHFFLFDFQKT 191 (215)
T ss_dssp HHHTTEEEEEEECCS---TTCEEEEEEEC
T ss_pred HHHCCCEEEEEecCC---CeEEEEEEEec
Confidence 888888876654432 23478888886
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.73 E-value=5e-08 Score=96.04 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=73.4
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----c-cchhh-ccccccCCCCCccceeeecc-c
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L-IGTYQ-NWCEAMSTYPRTYDLIHADS-I 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l-i~~~~-~~ce~~~~yp~t~Dl~H~~~-~ 548 (636)
...+|||+|||.|.++..|++.+. +++.+|.++.++..+.++- + +..++ |.. .+ +++.+||+|.+.+ +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~-~~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NL-NINRKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GC-CCSCCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cC-CccCCceEEEEcCcc
Confidence 356899999999999999998854 5677788778888887762 1 22222 221 11 2458999999987 8
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|....+.-+...+|.++-|+|+|||.+++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 876544446789999999999999999984
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=8.1e-08 Score=94.38 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=71.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-CC----CCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-YP----SRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-f~----~~sFD 284 (636)
.+|||||||+|.++..+++. +..++.+ |+++.+++.|+++ +. .+.+..+|.... + +. .++||
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTC---EVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 38999999999999999985 4556666 7788888777654 33 577877775432 1 11 16899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|++... ..+...++.++.++|||||++++...
T Consensus 148 ~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9998643 23447899999999999999999753
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-08 Score=96.06 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=89.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCC-CCccceeeec-cc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTY-PRTYDLIHAD-SI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~y-p~t~Dl~H~~-~~ 548 (636)
..+|||+|||.|.++..|++.. -.|+.+|.++.++..+.++ |+ +-..++-.+.+..+ +.+||+|.++ +.
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 5689999999999999999883 4667778887888887665 44 33444333444445 4889999765 33
Q ss_pred cccC-----CCCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCC---CceEEeccCCCCCCcceEE
Q 006662 549 FSLY-----KDRCEMEDVLLEMDRILRPEGSVIIRDD------VDILVKIKSITDGME---WEGRIADHENGPRQREKIL 614 (636)
Q Consensus 549 fs~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~~~---W~~~~~~~e~~~~~~~~~l 614 (636)
+... ...-.....|-|+-|+|||||.+++..- .+....+.+.+..+. |.+.....-+....+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 2210 0112234788999999999999999642 234456666666665 6665444333333445555
Q ss_pred EEEe
Q 006662 615 FANK 618 (636)
Q Consensus 615 ~~~K 618 (636)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5555
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=96.53 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=64.9
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCC-----------CCCeeEEEe
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-----------SRAFDMAHC 288 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~-----------~~sFDlV~~ 288 (636)
.+|||+|||+|.++..+++++..++++ |+++.. ....+.+.++|....+.. .++||+|+|
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gv---D~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISI---DLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEE---ESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEE---eccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence 499999999999999999986655555 444321 123578888887765421 148999999
Q ss_pred cccccc---cccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRCLIP---WGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~L~h---~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
...... +..+ ...++..+.++|||||.|++...
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 653310 1111 14678889999999999998754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=102.10 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=66.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHH----HcCC--CeEEEEeccccC-CCC-----CCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIRL-PYP-----SRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~----erg~--~~~~~~~d~~~L-pf~-----~~sFD 284 (636)
.+|||||||+|..+..|++. +..++++ |+++.+++.|+ +.+. .+.+..+|.... +.. .++||
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITC---DINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEE---ECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 38999999999999999984 3344444 44444433332 3343 578888887543 221 47899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|++... ..+...++.++.++|||||++++...
T Consensus 139 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 139 FIFIDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEEESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEEcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 9998653 23446799999999999999999743
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=104.04 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=95.7
Q ss_pred cceEeeecccchhhhhhhc--CCCeEEEEecCCCCCccchHHHHhhc----c---cchhh-ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALV--DDPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~eRg----l---i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|+ ..+- .+|+.+|.++.++..+.++. + +-+++ |..+ .+++.+||+|.++
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK--LDTREGYDLLTSN 194 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG--CCCCSCEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc--CCccCCeEEEEEC
Confidence 5689999999999999995 3322 35667777778888877653 2 22222 2222 1245999999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------------------------------HHHHHH
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV---------------------------------------DILVKI 587 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------------------------------~~~~~~ 587 (636)
+++....+.-....+|-|+-|+|||||.+++.+-. .....+
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 88776555544456899999999999999998611 135678
Q ss_pred HHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 588 KSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 588 ~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
.++++.-.++....... ....-..++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 88888888887654432 2234568888885
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.71 E-value=7.9e-09 Score=101.76 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=73.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cchhhccccccCCCCCccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|.++..|++... +|+.+|.++.++..+.++-- +..++.-.+.+ ..+.+||+|++.+++....
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~- 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID- 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-
T ss_pred CCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-
Confidence 34699999999999999988753 56777888788888888732 22222111222 2348999999988887654
Q ss_pred CcCHHHHHHHHh-hcccCCcEEEEEe
Q 006662 555 RCEMEDVLLEMD-RILRPEGSVIIRD 579 (636)
Q Consensus 555 ~c~~~~~l~e~d-RiLrPgG~~i~~d 579 (636)
+.+.+|.|+. |+|||||++++.+
T Consensus 118 --~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 --DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 4589999999 9999999999986
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=103.69 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=74.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccC--CCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRL--PYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~L--pf~~~sFDlV~~s~ 290 (636)
.+|||||||+|.++.+++++ ++.++.+ |+++.+++.|+++. ..+.+...|.... .+++++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~V---Eidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVV---ELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEE---ESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEE---ECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 48999999999999999984 5555555 88999999998763 3478888886553 34568999999854
Q ss_pred cccccc-cC---hHHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWG-QY---DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~-~d---~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. +.. .. ...+++++.++|+|||+|++..
T Consensus 168 ~~-~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 168 FA-GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp ST-TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 33 221 11 2689999999999999999875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-08 Score=104.43 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~~ 275 (636)
...++.+.+.+...++. +|||||||+|.++..|++++..++++ |+++.+++.++++. .++.+..+|...
T Consensus 14 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVAC---ELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCcccHHHHHHHhhCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 34566777777665555 99999999999999999988777777 88999998887652 257888888887
Q ss_pred CCCCCCCeeEEEecccccccccCh-HHHH--------------HHH--HhcccCCcEE
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYD-GLYL--------------IEV--DRVLRPGGYW 316 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L--------------~el--~RvLKPGG~L 316 (636)
++++ +||+|+++..+ ++.... ..++ +|+ .++|+|||.+
T Consensus 89 ~~~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 89 TDLP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp SCCC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred ccch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 7765 79999997655 444221 1222 233 3688999876
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.4e-08 Score=100.28 Aligned_cols=108 Identities=12% Similarity=-0.002 Sum_probs=79.4
Q ss_pred HHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--C-CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC--
Q 006662 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N-ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY-- 278 (636)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~-v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf-- 278 (636)
..++...++. +|||+|||+|..+..+++. + ..++++ |+++.+++.++++ +. ++.+...|...++.
T Consensus 76 ~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~av---D~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 76 PIVLNPREDD--FILDMCAAPGGKTTHLAQLMKNKGTIVAV---EISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL 150 (274)
T ss_dssp HHHHCCCTTC--EEEETTCTTCHHHHHHHHHTTTCSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred HHHhCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---CCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh
Confidence 3444445555 9999999999999999974 3 566666 8888888877654 44 57888888776654
Q ss_pred --CCCCeeEEEeccccc-----------------ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 --PSRAFDMAHCSRCLI-----------------PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 --~~~sFDlV~~s~~L~-----------------h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..++||+|++..... ........++.++.++|||||++++++.
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 367899999852111 1123447899999999999999999875
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.9e-09 Score=102.86 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=90.8
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhh-ccccccCCCC-Cc
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQ-NWCEAMSTYP-RT 539 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~-~~ce~~~~yp-~t 539 (636)
.++..+.. ....+|||+|||.|.++.+|++.. ..+|+.+|.++.++..+.++- -+-.++ |+. .+ ++| .+
T Consensus 84 ~~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-~~~~~~ 158 (254)
T 1xtp_A 84 NFIASLPG-HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TA-TLPPNT 158 (254)
T ss_dssp HHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GC-CCCSSC
T ss_pred HHHHhhcc-cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HC-CCCCCC
Confidence 33444443 457899999999999999998764 234666677778888888773 223332 322 22 344 89
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCceEEe
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~ 601 (636)
||+|.+.+++..... -+...+|.++.|+|||||+++|.+.. -....++++++...++....
T Consensus 159 fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred eEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 999999888775532 24679999999999999999998731 02366777777777776644
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=95.96 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=72.3
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
+|||+|||.|.++..|++.+ ..+|+.+|.++.++..+.++ |+ +..++ |. +.+ ++| .+||+|.+.+++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV-HNI-PIEDNYADLIVSRGSV 121 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT-TBC-SSCTTCEEEEEEESCG
T ss_pred EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH-HHC-CCCcccccEEEECchH
Confidence 99999999999999998873 24677778877888888777 44 22222 22 222 244 899999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
... -+...+|-|+-|+|||||.+++.+
T Consensus 122 ~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 122 FFW---EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhc---cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 765 356899999999999999999975
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-08 Score=102.88 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=75.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC----------CCeEEEEecccc-CCCCCCCeeE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG----------VPALIGVMASIR-LPYPSRAFDM 285 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg----------~~~~~~~~d~~~-Lpf~~~sFDl 285 (636)
..+|||||||+|.++..++++ ...++.+ |+++.+++.|+++. ..+.+..+|... ++..+++||+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Did~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMV---DIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEE---ESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 359999999999999999987 3455555 88889988887542 357888888755 3445678999
Q ss_pred EEeccccccc---cc--C--hHHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPW---GQ--Y--DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~---~~--d--~~~~L~el~RvLKPGG~Liis~ 320 (636)
|++.... ++ .+ . ...+++++.++|||||.+++..
T Consensus 155 Ii~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9997554 44 11 1 2689999999999999999974
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=101.97 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=74.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
+.+|||||||+|.++..+++. ...++.+ |+++.+++.|+++. ..+.+...|... ++..+++||+|
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Dis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDIC---EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 358999999999999999987 3455556 88999999998653 247778777654 23345789999
Q ss_pred EecccccccccC--h--HHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQY--D--GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d--~--~~~L~el~RvLKPGG~Liis~p 321 (636)
++... .++... . ..+++++.++|||||.+++...
T Consensus 194 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 194 IVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 98643 233211 1 6899999999999999999753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-08 Score=100.08 Aligned_cols=98 Identities=10% Similarity=0.128 Sum_probs=74.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
+.+|||||||+|.++.+++++ + ..++.+ |+++.+++.|+++. ..+.+...|... ++..+++||+|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Eid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLV---DIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEE---ESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEE---ECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 459999999999999999987 3 355555 88999999887642 357888888654 34446789999
Q ss_pred EecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
++.... ++... ...+++++.++|+|||.+++..
T Consensus 153 i~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 153 MVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 995443 33221 2579999999999999999985
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-07 Score=86.72 Aligned_cols=93 Identities=8% Similarity=0.014 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
..+|||+|||+|.++..+++.+. .++++ |+++.+++.++++. .++.+...|...++ ++||+|+++..++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAKEVICV---EVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 34999999999999999998854 46666 88999999887653 36788888887764 4899999988775
Q ss_pred ccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
...... ..++.++.++| ||.+++.
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEE
Confidence 544222 67899999998 5554443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=99.02 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
..+|||||||+|.++..++++ + ..++.+ |+++.+++.|+++. ..+.+...|... ++..+++||+|
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Did~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILC---EVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEE---ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 359999999999999999987 2 455555 88889998887642 357888887654 34446789999
Q ss_pred Eeccccccccc-----ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQ-----YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~-----d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++...- ++.. ....+++++.++|+|||.+++...
T Consensus 168 i~d~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 168 IIDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 985322 3111 126899999999999999999853
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=102.40 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
..+|||||||+|.++..++++. ..++.+ |+++.+++.|+++ ...+.+...|... ++..+++||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Did~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQC---EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 4599999999999999999873 455555 8899999888764 2357788887654 34456789999
Q ss_pred EecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
++.... ++.+. ...+++++.++|+|||.+++..
T Consensus 173 i~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 985433 33211 1468999999999999999975
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-08 Score=110.15 Aligned_cols=144 Identities=11% Similarity=0.158 Sum_probs=105.9
Q ss_pred chhhHHHHHHHHHHHHH-hhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhc
Q 006662 450 FREDTALWKKRVTYYKS-VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQN 528 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~-~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~ 528 (636)
+...+..|.++...+.. ++..+.. ....+|||+|||.|.++.+|.+.+. +|+.+|.+.+++..+.++|+-.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~ 156 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELT-GPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDF 156 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTC-SSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceee
Confidence 44556678888776654 3344444 4567999999999999999998865 77888888899999999987332211
Q ss_pred c----ccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H----------H
Q 006662 529 W----CEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D----------I 583 (636)
Q Consensus 529 ~----ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~----------~ 583 (636)
+ .+.+ +++ .+||+|.+.++|.... +...+|-|+.|+|||||.+++.... + .
T Consensus 157 ~~~~~~~~l-~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (416)
T 4e2x_A 157 FEKATADDV-RRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS 232 (416)
T ss_dssp CSHHHHHHH-HHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred echhhHhhc-ccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence 1 1112 243 8999999999988665 6799999999999999999997431 0 2
Q ss_pred HHHHHHHHhcCCCceEEe
Q 006662 584 LVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 584 ~~~~~~~~~~~~W~~~~~ 601 (636)
...+++++++-.+++...
T Consensus 233 ~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 257788888877776543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=100.19 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=72.2
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-C-----CCCCe
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-Y-----PSRAF 283 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-f-----~~~sF 283 (636)
.+|||||||+|..+..+++. +..++.+ |+++.+++.|+++ +. .+.+..++.... + + ++++|
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~i---D~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAM---DINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEE---ESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 38999999999999999986 5566666 7788888877653 33 467777776542 3 2 25789
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++... ..+...++.++.++|||||++++..
T Consensus 158 D~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998643 2355789999999999999999874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=102.95 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCCCccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
....+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+-..+.-.+..+..+|.+||+|.+.++|
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l 165 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAF 165 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCG
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChH
Confidence 34668999999999999999876 54 667777777888888877 44221222223344557999999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..... -+...+|-|+-|+|||||.+++.+
T Consensus 166 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 166 EHFGH-ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp GGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HhcCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75432 356899999999999999999975
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=104.51 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=71.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDR 555 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~ 555 (636)
-.+|||+|||+|.++..|+++.- +|+.+|.++.++..+.++.-+...+.=.|.++ +| .+||+|.|..+|..
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h~---- 111 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAMHW---- 111 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCCTT----
T ss_pred CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeehhH----
Confidence 35799999999999999998853 66777888788877766543443332224443 54 89999999777732
Q ss_pred cCHHHHHHHHhhcccCCcEEEEE
Q 006662 556 CEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 556 c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.+.+..+.|+.|||||||.+++-
T Consensus 112 ~~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 112 FDLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHcCCCCEEEEE
Confidence 46789999999999999999875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=98.08 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=74.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDR 555 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~ 555 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++|+..+--.-+.....+| .+||+|.+.+++....+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~- 122 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPD- 122 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCH-
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCH-
Confidence 45999999999999999988744 56677777789999998775221111111222244 89999999887775543
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 556 CEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 556 c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
-.+..+|-++-|+|||||.+++.+.
T Consensus 123 ~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2357899999999999999999853
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-07 Score=98.79 Aligned_cols=96 Identities=14% Similarity=-0.045 Sum_probs=75.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc-CCC-CCCCeeEEEec
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR-LPY-PSRAFDMAHCS 289 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~-Lpf-~~~sFDlV~~s 289 (636)
+.+|||+| |+|.++..++..+ ..++.+ |+++.+++.|+++ +. ++.+..+|... +|. .+++||+|+++
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~v---Di~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVL---DIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEE---CSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 35999999 9999999998875 467777 9999999988755 44 68888888877 664 45789999998
Q ss_pred ccccccccChHHHHHHHHhcccCCcE-EEEEe
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGY-WILSG 320 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~-Liis~ 320 (636)
..+... ....++.++.++|||||. ++++.
T Consensus 249 ~p~~~~--~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 249 PPETLE--AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CCSSHH--HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCCchH--HHHHHHHHHHHHcccCCeEEEEEE
Confidence 765332 247899999999999994 46654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-08 Score=103.19 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
..+|||||||+|.++..+++. ...++.+ |+++.+++.|+++. ..+.+...|... ++..+++||+|
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~v---Did~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMC---EIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEE---CSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 358999999999999999987 3455566 99999999998653 246777777654 33356789999
Q ss_pred EecccccccccCh----HHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~ 320 (636)
++... .++.+.. ..+++++.++|+|||.+++..
T Consensus 186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98553 2433222 578999999999999999985
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=100.49 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp-~t~Dl~H~~ 546 (636)
....+|||+|||.|.++..|++..- .|+.+|.++.++..+.++ |+ +-... |. +.+ ++| .+||+|.+.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l-~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQM-PFTDERFHIVTCR 110 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC-CSCTTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhC-CCCCCCEEEEEEh
Confidence 4467999999999999999988742 778888887888887765 43 22222 22 222 355 899999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++.... +.+.+|-|+-|+|||||++++.+
T Consensus 111 ~~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 111 IAAHHFP---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp SCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 7776553 56899999999999999999974
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=93.99 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhc--CCCeEEEEecCCCCCccchHHHHhh----cc--c
Q 006662 452 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV--DDPLWVMNTVPVEAKINTLGVIYER----GL--I 523 (636)
Q Consensus 452 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i 523 (636)
...+.|.+++.....++..+.. ....+|||+|||.|.++..|+ ..+. .|+.+|.++.++.++.++ |+ +
T Consensus 47 ~~~~~~~~~~~d~l~~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v 122 (240)
T 1xdz_A 47 EKKEVYLKHFYDSITAAFYVDF-NQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENT 122 (240)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCG-GGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CHHHHHHHHHHHHHhHHHhccc-CCCCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCE
Confidence 3445666665433333322221 235689999999999988887 3332 456667776777777653 54 3
Q ss_pred chhhccccccCC---CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCCc
Q 006662 524 GTYQNWCEAMST---YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD---VDILVKIKSITDGMEWE 597 (636)
Q Consensus 524 ~~~~~~ce~~~~---yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~~~W~ 597 (636)
-+++.=.+.+.. .+.+||+|.+..+ .+++.++-++.|+|||||.+++.+. .+.+..+.+.++...++
T Consensus 123 ~~~~~d~~~~~~~~~~~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 123 TFCHDRAETFGQRKDVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGE 195 (240)
T ss_dssp EEEESCHHHHTTCTTTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEE
T ss_pred EEEeccHHHhcccccccCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCe
Confidence 344321223332 2578999998663 4578999999999999999999753 44566677777778887
Q ss_pred eEEecc--CCCCCCcceEEEEEecCCCC
Q 006662 598 GRIADH--ENGPRQREKILFANKKYWTA 623 (636)
Q Consensus 598 ~~~~~~--e~~~~~~~~~l~~~K~~w~~ 623 (636)
...... -......-.+++++|.=.++
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~k~~~~~ 223 (240)
T 1xdz_A 196 LENIHSFKLPIEESDRNIMVIRKIKNTP 223 (240)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EeEEEEEecCCCCCceEEEEEEecCCCC
Confidence 653221 11112345677777764443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-08 Score=99.80 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=74.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC-CCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L-pf~~~sFDlV 286 (636)
+.+|||||||+|.++..+++.. ..++.+ |+++.+++.|+++. ..+.+...|.... +..+++||+|
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v---Did~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDIC---EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 4599999999999999999873 455555 88999999998653 3467887776542 2236789999
Q ss_pred EecccccccccCh----HHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~p 321 (636)
++.... ++.... ..+++++.++|+|||.+++...
T Consensus 156 i~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 156 IVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 985433 332221 5899999999999999999854
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-08 Score=99.71 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~ 545 (636)
....+|||+|||.|.++..|++.+- .+|+.+|.++.++..+.++ |+ +-+.. |+ +.++ +| .+||+|.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~-~~~~~fD~i~~ 120 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLP-FRNEELDLIWS 120 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCC-CCTTCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCC-CCCCCEEEEEE
Confidence 3467999999999999999998843 3566777777888887766 43 22222 22 2232 43 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++|... +.+.+|.++.|+|||||++++.+
T Consensus 121 ~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 121 EGAIYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp SSCGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 8888654 57899999999999999999985
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.64 E-value=8e-08 Score=92.99 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=97.1
Q ss_pred cCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh--
Q 006662 443 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-- 520 (636)
Q Consensus 443 ~~~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-- 520 (636)
+|+..+.|..+...-++.+.. .++..+.. ....+|||+|||.|.++..|++..- ..+|+.+|.++.++..+.++
T Consensus 10 ~g~~d~~f~~~g~~~~~~i~~--~~l~~l~~-~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~ 85 (204)
T 3e05_A 10 GIDDDEFATAKKLITKQEVRA--VTLSKLRL-QDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLK 85 (204)
T ss_dssp CCCGGGSCCCTTTSCCHHHHH--HHHHHTTC-CTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCCcHHhccCCcCChHHHHH--HHHHHcCC-CCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 456666777755543333432 12222333 4467999999999999999987630 02456667776788887765
Q ss_pred --cc--cchhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcC
Q 006662 521 --GL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGM 594 (636)
Q Consensus 521 --gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~ 594 (636)
|+ +-+++ |..+.+. ....||+|-+++.+. +++.+|-++-|+|||||.+++.. ..+....+.++++..
T Consensus 86 ~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~ 158 (204)
T 3e05_A 86 KFVARNVTLVEAFAPEGLD-DLPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH 158 (204)
T ss_dssp HHTCTTEEEEECCTTTTCT-TSCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred HhCCCcEEEEeCChhhhhh-cCCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence 44 22222 2222221 126799998866553 67899999999999999999985 446778888888888
Q ss_pred CCceEE
Q 006662 595 EWEGRI 600 (636)
Q Consensus 595 ~W~~~~ 600 (636)
.|++.+
T Consensus 159 g~~~~~ 164 (204)
T 3e05_A 159 GYMVEV 164 (204)
T ss_dssp TCEEEE
T ss_pred CCceeE
Confidence 886543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.8e-08 Score=97.90 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccCCCCCCCeeEEEec
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
+.+|||||||+|.++..+++.+..++.+ |+++.+++.|+++. ..+.+...|..... ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~v---eid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDTHIDFV---QADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSCEEEEE---CSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCCCEEEEE---ECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 4599999999999999998875344444 89999999886542 24677777766544 789999985
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. .++..+++++.++|||||.+++..
T Consensus 147 ~------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 Q------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp S------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred C------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 2 355569999999999999999974
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-08 Score=91.91 Aligned_cols=110 Identities=7% Similarity=0.084 Sum_probs=84.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++.. .+|+.+|.++.++..+.++ |+ +-+++ |+.+ .+| .+||+|.++++
T Consensus 36 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGGT 109 (183)
T ss_dssp TCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECSC
T ss_pred CCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECCc
Confidence 5689999999999999998843 3566667776788877766 43 22222 3333 344 68999999766
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCceEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
..++.+|-++.|+ |||.+++.+ ..+....+.+.++...|++...
T Consensus 110 -------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 5678999999999 999999987 5677788888888888988765
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-08 Score=101.50 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=75.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-----cchh-hccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----IGTY-QNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~-~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
....|||+|||.|.++.+|++... -+|+.+|.++.++..+.++.- +-++ .+|-+-...+| .+||.|..+.+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 357899999999999999998754 466677777789998887643 1122 24444455676 88999988777
Q ss_pred cccCC--CCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYK--DRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.+.+. +.-+.+.++-|+-|+|||||.|++-
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 66543 3345678999999999999999985
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-08 Score=102.06 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=75.2
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc----cchhh-ccccccCCCC-Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++.+|++. + .+|+.+|.++.++..+.++.- +-..+ |..+ + ++| .+||+|++.+
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYG---AHTHGIDICSNIVNMANERVSGNNKIIFEANDILT-K-EFPENNFDLIYSRD 128 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-C-CCCTTCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-C-CCCCCcEEEEeHHH
Confidence 45679999999999999999886 4 366777877789999888752 22222 3222 2 454 8999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|.... .-+...+|-|+-|+|||||.+++.+
T Consensus 129 ~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 129 AILALS-LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 877552 1356799999999999999999985
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-08 Score=95.47 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=86.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh-cccchhhccccccCCCCCccceeeeccccccCCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDR 555 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-gli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~ 555 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ ++--...|. +.+. .+.+||+|.+.+++.... .
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVP-R 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSC-H
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcC-H
Confidence 56899999999999999998854 567778777889888888 432111122 2233 448999999988776543 2
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeCH---------------HHHHHHHHHHhcCC-CceEEe
Q 006662 556 CEMEDVLLEMDRILRPEGSVIIRDDV---------------DILVKIKSITDGME-WEGRIA 601 (636)
Q Consensus 556 c~~~~~l~e~dRiLrPgG~~i~~d~~---------------~~~~~~~~~~~~~~-W~~~~~ 601 (636)
-+...+|-|+-|+|||||++++.... -....++++++.-. ++....
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 25678999999999999999997321 14567778877777 776643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-08 Score=93.64 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=86.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc----cchhh-ccccccCCCCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL----IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl----i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
...+|||+|||.|.++.+|++.. -+|+.+|.++.++..+.++ |+ +-+.+ |+.+.+. +.+||+|.++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 46789999999999999998873 3666777776788777766 43 22222 3322211 4789999997
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
..|.. ..-....+|-++-|+|+|||.+++.+.. +....+.+.++..-+++.+.... ..-.++.++|
T Consensus 127 ~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~k 193 (194)
T 1dus_A 127 PPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp CCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred CCccc--chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecC----CcEEEEEEee
Confidence 76542 1234578999999999999999998643 33344555544443445544333 1345566554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=102.39 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=80.5
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--C-CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N-ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP- 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~-v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp- 277 (636)
.+..++...++. +|||+|||+|..+..+++. + ..++++ |+++.+++.++++ +. ++.+...|...++
T Consensus 250 l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~---D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~ 324 (450)
T 2yxl_A 250 VASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAF---DVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE 324 (450)
T ss_dssp HHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS
T ss_pred HHHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---cCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch
Confidence 344555555555 9999999999999999985 2 566666 8899988877654 54 5788888887776
Q ss_pred -CCCCCeeEEEe------cccccccccCh----------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -YPSRAFDMAHC------SRCLIPWGQYD----------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -f~~~sFDlV~~------s~~L~h~~~d~----------------~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++ ..++ +..++. ..++.++.++|||||++++++.
T Consensus 325 ~~~~~~fD~Vl~D~Pcsg~g~~-~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 325 IIGEEVADKVLLDAPCTSSGTI-GKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp SSCSSCEEEEEEECCCCCGGGT-TTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred hhccCCCCEEEEcCCCCCCeee-ccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 55578999996 2222 212221 4689999999999999999875
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-08 Score=93.90 Aligned_cols=143 Identities=11% Similarity=0.061 Sum_probs=91.9
Q ss_pred cCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh--
Q 006662 443 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-- 520 (636)
Q Consensus 443 ~~~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-- 520 (636)
+|+..+.|..+...-++.+... ++..+.. ....+|||+|||.|.++.+|++.+ ..|+.+|.++.++..+.++
T Consensus 25 ~g~~d~~f~~~~~~~~~~~~~~--~l~~l~~-~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~ 98 (204)
T 3njr_A 25 PGRPESAFAHDGQITKSPMRAL--TLAALAP-RRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNID 98 (204)
T ss_dssp SCCCGGGSCCSSCCCCHHHHHH--HHHHHCC-CTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCHHHhhcCCCCCcHHHHHH--HHHhcCC-CCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHH
Confidence 4555666654443333344321 2222333 346789999999999999998873 3567777777888887765
Q ss_pred --cccchhhccccccCC-CC--CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcC
Q 006662 521 --GLIGTYQNWCEAMST-YP--RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGM 594 (636)
Q Consensus 521 --gli~~~~~~ce~~~~-yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~ 594 (636)
|+-+-+.-.+..+.. .+ ..||+|-+++.+ +.+ ++-++-|+|||||.+++.. ..+....+.+.++..
T Consensus 99 ~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 170 (204)
T 3njr_A 99 TYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH 170 (204)
T ss_dssp HTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred HcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence 443111111222222 22 479998875522 456 9999999999999999975 456777777777777
Q ss_pred CCceE
Q 006662 595 EWEGR 599 (636)
Q Consensus 595 ~W~~~ 599 (636)
.+++.
T Consensus 171 g~~i~ 175 (204)
T 3njr_A 171 GGQLL 175 (204)
T ss_dssp CSEEE
T ss_pred CCcEE
Confidence 66655
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-08 Score=102.52 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=74.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccch------hh-ccccccC--CCC-Cccce
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGT------YQ-NWCEAMS--TYP-RTYDL 542 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~------~~-~~ce~~~--~yp-~t~Dl 542 (636)
..+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++. .-.. .. |+. .+. -++ .+||+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFDA 133 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeEE
Confidence 56899999999999999998865 7888898888999887753 1111 11 111 111 044 89999
Q ss_pred eeec-cccccCCC----CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 543 IHAD-SIFSLYKD----RCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 543 ~H~~-~~fs~~~~----~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|+|. .+|....+ .-....+|-++.|+|||||++++...
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9997 57765444 44578999999999999999999864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-08 Score=104.60 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=62.5
Q ss_pred cEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHH-Hc-C-CCeEEEEe-ccccCCCCCCCeeEEEeccccc-
Q 006662 220 RTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFAL-ER-G-VPALIGVM-ASIRLPYPSRAFDMAHCSRCLI- 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~-er-g-~~~~~~~~-d~~~Lpf~~~sFDlV~~s~~L~- 293 (636)
.+|||||||+|.++..+++++ +.++++.... +..++..+. +. + ..+.+... |...++ .++||+|+|..+..
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~ 160 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG-GPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGESS 160 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCC-STTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCCCC
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccC-chhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCcccc
Confidence 499999999999999999983 4444441000 111111111 11 1 23667666 665554 56899999976652
Q ss_pred -ccccChH---HHHHHHHhcccCCcEEEEEeC
Q 006662 294 -PWGQYDG---LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 -h~~~d~~---~~L~el~RvLKPGG~Liis~p 321 (636)
++..+.. .+|.++.++|||||.|++..+
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2222222 478899999999999998754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-08 Score=98.98 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=71.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
...+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++ |+ +.+.+ |+. .+.. +.+||+|.+.
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~V~~~ 110 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVA-NEKCDVAACV 110 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCC-SSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCCc-CCCCCEEEEC
Confidence 3668999999999999999865 32 456677777888887665 44 22222 222 2222 6899999997
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+++-... +...+|-|+-|+|||||.+++.+
T Consensus 111 ~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 111 GATWIAG---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp SCGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CChHhcC---CHHHHHHHHHHHcCCCeEEEEec
Confidence 7775444 46899999999999999999985
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-08 Score=97.80 Aligned_cols=118 Identities=16% Similarity=0.072 Sum_probs=85.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC--CC-CCccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--TY-PRTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~--~y-p~t~Dl~H~~~~fs~~~ 553 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.+++...-++-.+..+. ++ +.+||+|.+.++|....
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 45899999999999999998865 56777877789999998853221111122222 24 38999999988887553
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH----------------------HHHHHHHHHHhcCCCceEE
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDV----------------------DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------------~~~~~~~~~~~~~~W~~~~ 600 (636)
+...+|.++.|+|||||.++|.+.. -....++++++...+++..
T Consensus 131 ---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 131 ---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 5579999999999999999998511 0124677777777777653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-08 Score=97.43 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=78.5
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc---cchhh-ccccccCCCC-Ccc
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTYP-RTY 540 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~~~~yp-~t~ 540 (636)
.++..+.. ....+|||+|||.|.++.+|++.+.- +|+.+|.++.++..+.++.- +.... |. +.++ +| .+|
T Consensus 35 ~l~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~-~~~~~f 109 (253)
T 3g5l_A 35 ELKKMLPD-FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIA-IEPDAY 109 (253)
T ss_dssp HHHTTCCC-CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCC-CCTTCE
T ss_pred HHHHhhhc-cCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCC-CCCCCe
Confidence 33433443 45789999999999999999887542 66777887789998888753 22221 22 2232 44 899
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|.+.++|... -+...+|-++-|+|||||.+++..
T Consensus 110 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 110 NVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998888765 356899999999999999999973
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=98.11 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=71.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||.|.++..|++..- -.|+.+|.++.++..+.++ |+ +-+++ |+ +.++ +| .+||+|++.+
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLP-FQNEELDLIWSEG 122 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCS-SCTTCEEEEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCC-CCCCCEEEEEecC
Confidence 56999999999999999987631 1667777777788877665 44 22222 32 2332 33 8999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++... +.+.+|-++-|+|||||++++.+
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87654 57899999999999999999986
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-08 Score=97.42 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=73.5
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC-Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++.+|++..- +|+.+|.++.++..+.++ |+ +-+.+.=.+.+ +++ .+||+|.+..
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIITCRY 95 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEEEES
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-CCCCCcEEEEEECC
Confidence 4477999999999999999988743 677778877888877665 43 22222111333 244 8999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.... +.+.+|.|+.|+|||||++++.+
T Consensus 96 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 96 AAHHFS---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 776553 56899999999999999999975
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=94.59 Aligned_cols=142 Identities=9% Similarity=0.032 Sum_probs=93.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--------------------------------
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-------------------------------- 522 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-------------------------------- 522 (636)
....+|||+|||.|.++..|++... .+|+.+|.++.++..+.++--
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4467999999999999999988765 577888888788888765421
Q ss_pred ---c-chhh-ccccccCC-CC---CccceeeeccccccCC-CCcCHHHHHHHHhhcccCCcEEEEEeCHH----------
Q 006662 523 ---I-GTYQ-NWCEAMST-YP---RTYDLIHADSIFSLYK-DRCEMEDVLLEMDRILRPEGSVIIRDDVD---------- 582 (636)
Q Consensus 523 ---i-~~~~-~~ce~~~~-yp---~t~Dl~H~~~~fs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------- 582 (636)
+ ..++ |..+ ..+ -+ .+||+|.+..++.... +.-+...+|-++-|+|||||++|+.+...
T Consensus 133 ~~~v~~~~~~d~~~-~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 133 RRAIKQVLKCDVTQ-SQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HHHEEEEEECCTTS-SSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhhheeEEEeeecc-CCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 2 2221 2222 222 23 7999999987776322 12245789999999999999999976211
Q ss_pred ------HHHHHHHHHhcCCCceEEeccCCC-------CCCcceEEEEEec
Q 006662 583 ------ILVKIKSITDGMEWEGRIADHENG-------PRQREKILFANKK 619 (636)
Q Consensus 583 ------~~~~~~~~~~~~~W~~~~~~~e~~-------~~~~~~~l~~~K~ 619 (636)
..+.+.++++...+++........ .....-+++++|+
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 234777777777777654332211 1113446777774
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=101.74 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=71.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEecccc-CCC---CCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIR-LPY---PSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~-Lpf---~~~sFDlV~ 287 (636)
.+|||+|||+|.++..+++.+. .++++ |+++.+++.|+++ +. ++.+..+|... ++. ...+||+|+
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~v---D~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 3899999999999999998764 55666 7777787777643 43 57888888655 221 245899999
Q ss_pred eccccc----ccccCh----HHHHHHHHhcccCCcEEEEEeC
Q 006662 288 CSRCLI----PWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 288 ~s~~L~----h~~~d~----~~~L~el~RvLKPGG~Liis~p 321 (636)
+..... ....+. ..++.++.++|+|||+++++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 854331 111122 3577888999999999999975
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-08 Score=94.47 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=93.9
Q ss_pred CCcceEeeecccchhhhhhhcCCC--eEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCC-Cccceee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIH 544 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp-~t~Dl~H 544 (636)
....+|||+|||.|.++.+|++.. - ..|+.+|.++.++..+.++ |+ +-... |. +.+. ++ .+||+|.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~ 111 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEK--GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIP-LPDNTVDFIF 111 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCS-SCSSCEEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCC-CCCCCeeEEE
Confidence 336689999999999999997652 1 1456667766788777766 32 22222 22 2222 44 7899999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-------------HHHHHHHHHHhcCCCceEEeccCCCCCCcc
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-------------DILVKIKSITDGMEWEGRIADHENGPRQRE 611 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~ 611 (636)
+.++|.... +...+|-|+-|+|||||.+++.+.. -....+.++++...++......- + ...
T Consensus 112 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~--~~~ 185 (219)
T 3dh0_A 112 MAFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-G--KYC 185 (219)
T ss_dssp EESCGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-T--TTE
T ss_pred eehhhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-C--Cce
Confidence 988887654 4689999999999999999998521 13577888888888886543222 1 256
Q ss_pred eEEEEEec
Q 006662 612 KILFANKK 619 (636)
Q Consensus 612 ~~l~~~K~ 619 (636)
.+++++|+
T Consensus 186 ~~~~~~k~ 193 (219)
T 3dh0_A 186 FGVYAMIV 193 (219)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 77888885
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.6e-08 Score=95.58 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=72.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-C-----CCCCe
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-Y-----PSRAF 283 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-f-----~~~sF 283 (636)
.+|||||||+|..+..+++. +..++.+ |+++.+++.|+++ +. .+.+..+|.... + + +.++|
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAI---DFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 38999999999999999986 5566667 8888888888644 43 367777776442 2 2 25789
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++.. ...+...+++++.++|||||++++..
T Consensus 149 D~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999853 23344789999999999999999874
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=100.01 Aligned_cols=96 Identities=27% Similarity=0.306 Sum_probs=72.8
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~ 545 (636)
...+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +...+ |. +.+ ++| .+||+|.+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~ 156 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEI-PCEDNSYDFIWS 156 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSC-SSCTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc-ccC-CCCCCCEeEEEe
Confidence 3679999999999999999876 54 667777777888877665 43 22222 22 122 344 79999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+++....+ ...+|-|+-|+|||||.+++.+
T Consensus 157 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 157 QDAFLHSPD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp ESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhcCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 888876654 6899999999999999999985
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-08 Score=92.80 Aligned_cols=142 Identities=10% Similarity=0.018 Sum_probs=96.0
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccC-CCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMS-TYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~-~yp~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|++. +- -+|+.+|.++.++..+.++ |+ +-+++.=.+.+. ..+.+||+|-++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 458999999999999998775 22 1566778777888887766 33 333331123344 335899999987
Q ss_pred ccc-ccC-----CCCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCC---CceEEeccCCCCCCcc
Q 006662 547 SIF-SLY-----KDRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGME---WEGRIADHENGPRQRE 611 (636)
Q Consensus 547 ~~f-s~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~---W~~~~~~~e~~~~~~~ 611 (636)
..| ... ...-+...+|.++-|+|||||.+++.+ ..+....+.+.++.+. |.+.....-+.+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp 180 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP 180 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence 554 110 111123479999999999999999975 1234566666666655 8887766666666678
Q ss_pred eEEEEEecC
Q 006662 612 KILFANKKY 620 (636)
Q Consensus 612 ~~l~~~K~~ 620 (636)
.++|.+|..
T Consensus 181 ~~~~~~~~~ 189 (197)
T 3eey_A 181 ILVCIEKIS 189 (197)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcc
Confidence 888888854
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.59 E-value=9.5e-08 Score=93.61 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCCCC-CccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|.++..|.+. +.+|.++.++..+.++++ .++. |. +.+ +++ .+||+|.+.+++....
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~-~~~~~d~-~~~-~~~~~~fD~v~~~~~l~~~~- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTA-ENL-PLKDESFDFALMVTTICFVD- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBT-TBC-CSCTTCEEEEEEESCGGGSS-
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCC-EEEEccc-ccC-CCCCCCeeEEEEcchHhhcc-
Confidence 568999999999999999887 445666688899988854 2222 22 222 244 7999999988876543
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHH------------------------HHHHHHHHHhcCCCceE
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRDDVD------------------------ILVKIKSITDGMEWEGR 599 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------------------~~~~~~~~~~~~~W~~~ 599 (636)
+...+|.++-|+|+|||.+++.+... ....++++++...++..
T Consensus 117 --~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 117 --DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 46899999999999999999974210 23566677777777664
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-08 Score=99.06 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=78.9
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccCCC-C
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTY-P 537 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~~y-p 537 (636)
.++..+.. . ..+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +..++.=.+.+..+ +
T Consensus 60 ~~l~~~~~-~-~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMGP-Q-KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTCS-S-CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcCC-C-CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 44444444 2 46899999999999999998854 567777777888888776 44 22333112334434 4
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+||+|.+.+++.... +...+|-|+.|+|||||.+++.+.
T Consensus 135 ~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 135 TPVDLILFHAVLEWVA---DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp SCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEECchhhccc---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8999999988887654 458999999999999999999863
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-08 Score=98.55 Aligned_cols=97 Identities=9% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCCCccceeeeccccccC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLY 552 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~ 552 (636)
....+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- +.... |. +.+ +++.+||+|++..+|...
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~-~~~~~fD~v~~~~~l~~~ 130 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNF-RVDKPLDAVFSNAMLHWV 130 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTC-CCSSCEEEEEEESCGGGC
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhC-CcCCCcCEEEEcchhhhC
Confidence 3467999999999999999988543 66777777788988887731 11221 22 222 247899999998877654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
. +.+.+|.|+-|+|||||++++..
T Consensus 131 ~---d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 131 K---EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 56899999999999999999974
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=98.45 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=91.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh--cccc----hhhccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIG----TYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gli~----~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..++|||+|||+|+|+..|++.+. -.|+.+|.+++||...+.+ .++. -..... ...+| .+||++-++-.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCS
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEee
Confidence 467999999999999999988753 3566778887899886542 1111 111111 12245 45999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------------------HHHHHHHHHHHhcCCCceEEec--cC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------------------VDILVKIKSITDGMEWEGRIAD--HE 604 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------------~~~~~~~~~~~~~~~W~~~~~~--~e 604 (636)
|. .+..+|-|+.|+|||||.+++-.. ...+.++.+.+....|.+.-.+ .-
T Consensus 161 f~------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 161 FI------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp SS------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred Hh------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 75 348899999999999999988611 1256778888888999876443 22
Q ss_pred CCCC-CcceEEEEEec
Q 006662 605 NGPR-QREKILFANKK 619 (636)
Q Consensus 605 ~~~~-~~~~~l~~~K~ 619 (636)
.|+. +.|-++.++|.
T Consensus 235 ~g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 235 QGGHGNIEFLAHLEKT 250 (291)
T ss_dssp CCGGGCCCEEEEEEEC
T ss_pred CCCCcCHHHHHHhhhc
Confidence 3333 45777777663
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=97.97 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHcC---------------CCeEEEEecccc-CCCCCC
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERG---------------VPALIGVMASIR-LPYPSR 281 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~erg---------------~~~~~~~~d~~~-Lpf~~~ 281 (636)
+.+|||||||+|.++..+++++ ..++.+ |+++.+++.|+++. ..+.+...|... ++. ++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~v---Did~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMV---EIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEE---ESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 3589999999999999999884 345555 88999999887652 246777777543 222 57
Q ss_pred CeeEEEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
+||+|++.... ++... ...+++++.++|+|||.+++..
T Consensus 152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 89999986543 33211 2678999999999999999974
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=88.73 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=82.4
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----ccc-c-hhh-ccccccCCCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLI-G-TYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli-~-~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
....+|||+|||.|.++.+|++. +- ..|+.+|.++.++..+.++ |+- . .++ |..+.+...+.+||+|.+.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence 34679999999999999999876 22 3566777777788888765 442 1 222 3334444333789999987
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~ 599 (636)
+.+.. ..+|-++.|+|||||.+++.+. .+....+.++.+...+++.
T Consensus 102 ~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 102 GGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp C-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred CcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 66643 6799999999999999999864 4556666677666666554
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-08 Score=101.75 Aligned_cols=103 Identities=8% Similarity=0.112 Sum_probs=74.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
..+|||+|||+|.++.+|++. +---.+|+.+|.++.+++.+.+| |+..-+.-.|..+..+| ..||+|.+..++.
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 468999999999999888754 10112567788888999998876 44332333345566676 7799998876655
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
... .-+...+|-|+-|+|||||.+|++|.
T Consensus 151 ~~~-~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLE-PSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecC-chhHhHHHHHHHHHcCCCcEEEEEec
Confidence 432 22346799999999999999999863
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-08 Score=98.59 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=87.2
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc------cchhh-ccccccCCCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------i~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
...+|||+|||.|.++.+|++.. ..+|+.+|.++.++..+.++.- +-.+. |+ +.+..-+.+||+|.+..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcch
Confidence 46799999999999999998875 2356777877788888877642 11222 21 222222368999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------------HHHHHHHHHhcCCCceEEec
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---------------ILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------------~~~~~~~~~~~~~W~~~~~~ 602 (636)
+....+. .+..+|.++-|+|||||.+++.+... ....+.++++...++.....
T Consensus 156 l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 156 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 7654331 24689999999999999999976311 35678888888888776543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=99.28 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=73.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccC-CCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL-PYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~L-pf~~~sFDlV~~s~~L~h 294 (636)
.+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +....+...|.... +...+.||+|++......
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga~V~av---Dis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGAYALAV---DKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred CeEEEcccchhHHHHHHHHcCCeEEEE---ECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence 399999999999999999988776677 9999999888654 55556667776553 222334999998643211
Q ss_pred c--------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 W--------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~--------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. ..+...++..+.++|||||+|++...
T Consensus 293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 11224788999999999999997754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-07 Score=93.32 Aligned_cols=149 Identities=10% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc-
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER- 262 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er- 262 (636)
|-.|.+--..++|-.+...-...+.+++ .+|. +|||+|||+|.++..+++++ ..++.+ |+++.+++.++++
T Consensus 96 G~~~~~D~~k~~f~~~~~~er~ri~~~~--~~g~--~VlD~~aG~G~~~i~~a~~g~~~V~av---D~np~a~~~~~~N~ 168 (278)
T 3k6r_A 96 GIKYKLDVAKIMFSPANVKERVRMAKVA--KPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAI---EKDPYTFKFLVENI 168 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHC--CTTC--EEEETTCTTTTTTHHHHHHTCCEEEEE---CCCHHHHHHHHHHH
T ss_pred CEEEEEeccceEEcCCcHHHHHHHHHhc--CCCC--EEEEecCcCcHHHHHHHHhcCCeEEEE---ECCHHHHHHHHHHH
Confidence 3334443344555555554445666654 4555 99999999999999999886 466666 8898888877644
Q ss_pred ---CC--CeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchh
Q 006662 263 ---GV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTE 337 (636)
Q Consensus 263 ---g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e 337 (636)
++ .+.+..+|...++ +.+.||.|+++.. .....++..+.++|||||++.+...... ..
T Consensus 169 ~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~~~~e-----------~~ 231 (278)
T 3k6r_A 169 HLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPE-----------KL 231 (278)
T ss_dssp HHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEG-----------GG
T ss_pred HHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEEeeecc-----------cc
Confidence 44 3677778877665 3578999987532 2335688889999999999877532100 00
Q ss_pred hhHHHHHHHHHHHHHhceEe
Q 006662 338 DLKSEQNGIETIARSLCWKK 357 (636)
Q Consensus 338 ~l~~~~~~ie~la~~l~Wk~ 357 (636)
......+.++++++..+++.
T Consensus 232 ~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 232 MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp TTTTTHHHHHHHHHHTTCEE
T ss_pred cchhHHHHHHHHHHHcCCcE
Confidence 01122345667778888764
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-08 Score=93.82 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=85.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCC-CCCccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST-YPRTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~-yp~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||.|.++.+|++.+. .+|+.+|.++.++..+.++ |+-. +.-.+..+.. .+.+||+|.++.++.
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~- 136 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAE- 136 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHH-
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHH-
Confidence 46899999999999999988764 4667777777788887776 4422 2212222333 359999999976653
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCceEEec
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 602 (636)
.+..+|.++-|+|||||++++.+ ..+....+.++++...++.....
T Consensus 137 -----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 137 -----ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 25788999999999999999975 34456778888888777776543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=92.05 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=90.2
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
++.+.++++ ++. +|||||||+|.++..+++.+. .++.+ |+++.+++.|+++ +. .+.+..+|....
T Consensus 12 L~~i~~~v~--~g~--~VlDIGtGsG~l~i~la~~~~~~~V~Av---Di~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~ 84 (230)
T 3lec_A 12 LQKVANYVP--KGA--RLLDVGSDHAYLPIFLLQMGYCDFAIAG---EVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA 84 (230)
T ss_dssp HHHHHTTSC--TTE--EEEEETCSTTHHHHHHHHTTCEEEEEEE---ESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC--CCC--EEEEECCchHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc
Confidence 345555542 343 899999999999999999863 34444 8899998888754 43 478888887776
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceE
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk 356 (636)
..+++.||+|+.....-. --..++.+..+.|+++|+|+++.. .. ...+.+.....+|.
T Consensus 85 ~~~~~~~D~IviaGmGg~---lI~~IL~~~~~~l~~~~~lIlqp~------------~~-------~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 85 FEEADNIDTITICGMGGR---LIADILNNDIDKLQHVKTLVLQPN------------NR-------EDDLRKWLAANDFE 142 (230)
T ss_dssp CCGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEES------------SC-------HHHHHHHHHHTTEE
T ss_pred cccccccCEEEEeCCchH---HHHHHHHHHHHHhCcCCEEEEECC------------CC-------hHHHHHHHHHCCCE
Confidence 655557999886554311 125788889999999999999953 10 23466677778897
Q ss_pred eecc
Q 006662 357 KLIQ 360 (636)
Q Consensus 357 ~v~~ 360 (636)
.+.+
T Consensus 143 i~~E 146 (230)
T 3lec_A 143 IVAE 146 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=91.77 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=88.3
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhhccccccCCC--CCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTY--PRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++. +..-+.-.+..+..+ +.+||+|.+.++|..
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 4999999999999999988754 5677788878888887764 212122222333333 379999999888875
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------HHHHHHHHHHhcCCCceEEec
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDDV-----------DILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------~~~~~~~~~~~~~~W~~~~~~ 602 (636)
.. .-+...+|-++-|+|||||++++.+-. -....++++++...|+....+
T Consensus 145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 53 346789999999999999999986321 134678888888888876443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-08 Score=99.29 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=72.4
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhcccccc--CCCC-Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAM--STYP-RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~--~~yp-~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++..|++.. ..+|+.+|.++.++..+.++ |+..-+.-.+..+ .++| .+||+|.+.+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE 137 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEec
Confidence 346799999999999999997641 13666777777788877765 5422111111222 2344 7999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|.... +.+.+|-|+-|+|||||.+++.+
T Consensus 138 ~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHMP---DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTSS---CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhCC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 887554 35899999999999999999985
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-08 Score=97.81 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=72.7
Q ss_pred CCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
....+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ ++ +-.+. |.. . .+++.+||+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~-~~~~~~fD~v~~ 95 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-E-IELNDKYDIAIC 95 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-T-CCCSSCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-h-cCcCCCeeEEEE
Confidence 34679999999999999999876 22 455667766777777665 11 22222 322 2 234789999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
..++.... +.+.+|.++-|+|||||++++.+..
T Consensus 96 ~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 96 HAFLLHMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ESCGGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CChhhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88877553 5589999999999999999988654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=94.58 Aligned_cols=95 Identities=19% Similarity=0.300 Sum_probs=72.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc--c---cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG--L---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg--l---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
...+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++- . +-..+ |+ +.++ +| .+||+|++..+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIP-LPDESVHGVIVVHL 113 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCC-SCTTCEEEEEEESC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCC-CCCCCeeEEEECCc
Confidence 467899999999999999998853 6777788878999888872 1 22222 22 2232 44 79999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|.... +.+.+|.|+-|+|||||++++.
T Consensus 114 l~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 76554 5689999999999999999986
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-07 Score=92.35 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
++.+.++++ ++. +|||||||+|.++..+++.+. .++.+ |+++.+++.|+++ +. .+.+..+|....
T Consensus 12 L~~i~~~v~--~g~--~VlDIGtGsG~l~i~la~~~~~~~V~av---Di~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~ 84 (244)
T 3gnl_A 12 LEKVASYIT--KNE--RIADIGSDHAYLPCFAVKNQTASFAIAG---EVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV 84 (244)
T ss_dssp HHHHHTTCC--SSE--EEEEETCSTTHHHHHHHHTTSEEEEEEE---ESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC--CCC--EEEEECCccHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEEecchhhc
Confidence 345555543 343 899999999999999999863 34455 8899999888755 44 378888887665
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceE
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk 356 (636)
..++..||+|+.....-. --..++.+..+.|+++|+|+++.. . ....+.+.....+|.
T Consensus 85 ~~~~~~~D~IviagmGg~---lI~~IL~~~~~~L~~~~~lIlq~~------------~-------~~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 85 IEKKDAIDTIVIAGMGGT---LIRTILEEGAAKLAGVTKLILQPN------------I-------AAWQLREWSEQNNWL 142 (244)
T ss_dssp CCGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEES------------S-------CHHHHHHHHHHHTEE
T ss_pred cCccccccEEEEeCCchH---HHHHHHHHHHHHhCCCCEEEEEcC------------C-------ChHHHHHHHHHCCCE
Confidence 544446999987554311 125788899999999999999953 0 023455666777887
Q ss_pred eecc
Q 006662 357 KLIQ 360 (636)
Q Consensus 357 ~v~~ 360 (636)
.+.+
T Consensus 143 i~~E 146 (244)
T 3gnl_A 143 ITSE 146 (244)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-08 Score=99.73 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=83.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ |+ +-.++ |.. .+.. +.+||+|.+..+|.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCC-CSCEEEEEECSSGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccc-cCCccEEEEccchh
Confidence 56899999999999999998865 677778877788777665 43 22221 221 1222 68999999998887
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------HHHHHHHHHHhcCCCceEEe
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--------------DILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~~~~~~~~~~~~~~W~~~~~ 601 (636)
.. +.-.+..+|-++-|+|||||.++|.... -....++++... |++...
T Consensus 196 ~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 196 FL-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 44 3346779999999999999998774211 013466677666 887654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-08 Score=98.93 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
....+|||+|||.|.++..|++. +. .|+.+|.++.++..+.++ |+ +-... |. +.++.-+.+||+|++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANI-FSLPFEDSSFDHIFV 111 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG-GGCCSCTTCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc-ccCCCCCCCeeEEEE
Confidence 34679999999999999999876 33 556667776788877766 44 22222 22 222222489999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..++.... +.+.+|-++.|+|||||++++.+
T Consensus 112 ~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 112 CFVLEHLQ---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred echhhhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88877554 45799999999999999999975
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=101.50 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=78.0
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC--
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP-- 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp-- 277 (636)
..+..++...++. +|||+|||+|..+..+++.. ..++++ |+++.+++.++++ +.++.+...|...++
T Consensus 236 ~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~---D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 236 QGCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAV---DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW 310 (429)
T ss_dssp HTHHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEE---ESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred HHHHHHcCCCCcC--eEEEECCCchHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh
Confidence 3455555555555 99999999999999999863 455555 6666666655443 666788888877765
Q ss_pred CCCCCeeEEEec------ccccccccCh----------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCS------RCLIPWGQYD----------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s------~~L~h~~~d~----------------~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++. .++ +..++. ..++.++.++|||||++++++.
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~-~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVI-RRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGT-TTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred cccCCCCEEEEeCCCCccccc-CCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 566789999962 122 111121 3789999999999999999975
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.2e-08 Score=98.69 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCcceEeeecccchhhhhhhcC---CCeEEEEecCCCCCccchHHHHhh-----cccchhhccccccCC--C-C------
Q 006662 475 GRYRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYER-----GLIGTYQNWCEAMST--Y-P------ 537 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eR-----gli~~~~~~ce~~~~--y-p------ 537 (636)
....+|||+|||.|.++..|++ .. .+|+.+|.++.++..+.++ |...-++-.+..+.. + .
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccC
Confidence 3478999999999999999994 43 3667778887888888876 332222111122222 2 2
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.+||+|++..++... +...+|.++.|+|||||.+++
T Consensus 112 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 112 QKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 699999998877654 789999999999999999998
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=97.47 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~L 276 (636)
...++.+.+.+...++. +|||||||+|.++..|++++..++++ |+++.+++.++++ + .++.+..+|...+
T Consensus 28 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~La~~~~~v~~v---Di~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSD--IVLEIGCGTGNLTVKLLPLAKKVITI---DIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHTTTSSEEEEE---CSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCcCcHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence 34566677777655554 99999999999999999987777777 8899999888754 3 3578888888777
Q ss_pred CCCCCCeeEEEecccccccc
Q 006662 277 PYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~ 296 (636)
+++ +||+|+++... ++.
T Consensus 103 ~~~--~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 103 VFP--KFDVCTANIPY-KIS 119 (299)
T ss_dssp CCC--CCSEEEEECCG-GGH
T ss_pred Ccc--cCCEEEEcCCc-ccc
Confidence 654 79999997655 444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=92.29 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=95.4
Q ss_pred cceEeeeccc-chhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAY-LGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g-~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+||| .|.++..|++.. ..+|+.+|.++.++..+.++ |+ +.+++ |+ +.+..+| .+||+|-++-.
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECCC
Confidence 5789999999 999999988762 23567777777788777654 43 22332 21 2355565 89999998755
Q ss_pred cccCC----------------CCcCHHHHHHHHhhcccCCcEEEEE--eCHHHHHHHHHHHhcCCCceEEeccCCCCCCc
Q 006662 549 FSLYK----------------DRCEMEDVLLEMDRILRPEGSVIIR--DDVDILVKIKSITDGMEWEGRIADHENGPRQR 610 (636)
Q Consensus 549 fs~~~----------------~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 610 (636)
|.... ....+..+|-++-|+|||||.+++. ...+....+.+.++...|++.......|. .-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~ 211 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RW 211 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--C
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eE
Confidence 53211 1122478999999999999999984 34467788888899999988876555443 34
Q ss_pred ceEEEEEe
Q 006662 611 EKILFANK 618 (636)
Q Consensus 611 ~~~l~~~K 618 (636)
-.+|+.+|
T Consensus 212 ~~~l~f~~ 219 (230)
T 3evz_A 212 RHSLIFFK 219 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 55666665
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-07 Score=94.91 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=76.8
Q ss_pred HHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccc
Q 006662 459 KRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEA 532 (636)
Q Consensus 459 ~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~ 532 (636)
..+.....++..+.. ....+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +-.++ |..+
T Consensus 25 ~~~~~~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~- 99 (252)
T 1wzn_A 25 AEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE- 99 (252)
T ss_dssp HHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-
T ss_pred HHHHHHHHHHHHhcc-cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-
Confidence 334444444444433 3457999999999999999998865 677888887888888765 32 22222 2222
Q ss_pred cCCCCCccceeeecc-ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 533 MSTYPRTYDLIHADS-IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 533 ~~~yp~t~Dl~H~~~-~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+ .++.+||+|.+.. .+. +.+.-+...+|.++-|+|+|||.+|+.-
T Consensus 100 ~-~~~~~fD~v~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 100 I-AFKNEFDAVTMFFSTIM-YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp C-CCCSCEEEEEECSSGGG-GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-ccCCCccEEEEcCCchh-cCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 1 2458899998742 222 2233356789999999999999999864
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=92.53 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=73.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cch-------hhccccccCC--C-CCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGT-------YQNWCEAMST--Y-PRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~-------~~~~ce~~~~--y-p~t~Dl~H~ 545 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- .+. ..-.+..+.. + +.+||+|.+
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 56899999999999999998854 67777877788888877432 111 1111222222 3 389999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+++....+.-....+|-++-|+|||||.+++.+
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8888766554444589999999999999999975
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.9e-08 Score=97.00 Aligned_cols=97 Identities=21% Similarity=0.352 Sum_probs=72.5
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
....+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++.-+..++.=.+.++ +| .+||+||+.+++...
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~- 107 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHF- 107 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGC-
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhc-
Confidence 3467999999999999999998654 66777777677776666643333332223333 54 899999998887655
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
-+.+.+|-|+-|+|| ||++++.+
T Consensus 108 --~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 108 --SHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp --SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred --cCHHHHHHHHHHHhC-CcEEEEEE
Confidence 456899999999999 99888864
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-07 Score=93.81 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=72.3
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCC--CCccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTY--PRTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~y--p~t~Dl~H~~~~f 549 (636)
....+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++-- .+-+.-.+..+..+ +.+||+|.+..++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l 119 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSI 119 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcc
Confidence 44689999999999999999876 32 56667777788888887721 11111222333333 3899999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... .-....+|-|+-|+|||||.+++.+
T Consensus 120 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 120 HHLE-DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7552 2123469999999999999999986
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-07 Score=96.63 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=75.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccCCC----CCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRLPY----PSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~Lpf----~~~sFDlV~ 287 (636)
.+|||+|||+|.++..+++.+ ..++++ |+++.+++.|+++ +. ++.+..+|...... ..++||+|+
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~v---D~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSV---DTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 389999999999999999985 366666 8899998887654 45 57888888755421 146899999
Q ss_pred ecccc--------cccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 288 CSRCL--------IPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 288 ~s~~L--------~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+.... .........++.++.++|+|||+++++..+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 86422 111123368899999999999999998753
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.4e-08 Score=94.98 Aligned_cols=98 Identities=12% Similarity=0.210 Sum_probs=73.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc---cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
....+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++.- +...+ |. +.++ +| .+||+|.+..++
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l 117 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADL-DKLH-LPQDSFDLAYSSLAL 117 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCG-GGCC-CCTTCEEEEEEESCG
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcCh-hhcc-CCCCCceEEEEeccc
Confidence 3467999999999999999988754 156666777788888888753 22222 22 2222 44 899999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +...+|-++-|+|||||.+++.+
T Consensus 118 ~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 118 HYVE---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 6543 56899999999999999999975
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-08 Score=95.54 Aligned_cols=121 Identities=10% Similarity=0.065 Sum_probs=83.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-c--------------cchhhccccccCCCC----
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L--------------IGTYQNWCEAMSTYP---- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l--------------i~~~~~~ce~~~~yp---- 537 (636)
..+|||+|||.|.++.+|++++. .|+.+|.++.++..+.+|- + ..-+.-.|..+...|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 56899999999999999998764 6888899989999998872 1 111222233444444
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcE-EEEE-eCH----------HHHHHHHHHHhcCCCceEEec
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGS-VIIR-DDV----------DILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~-~i~~-d~~----------~~~~~~~~~~~~~~W~~~~~~ 602 (636)
.+||+|-+.++|.... ..+.+.++-||-|+|||||. +++. +-. -..+.+++++.. .|++....
T Consensus 100 ~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp HSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred CCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEec
Confidence 6899999877775443 23456789999999999998 3333 110 024567777776 67765443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-08 Score=97.16 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=72.7
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-----cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
...+|||+|||+|.++.+|++.+. -+|+.+|.++.++..+.++.- +-+++ |+.+-..++| .+||+|.++ .
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d-~ 136 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYD-T 136 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEEC-C
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEEC-C
Confidence 357899999999999999988654 377788888899999888652 22222 3333233565 899999883 2
Q ss_pred ccc---CCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSL---YKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|+. ..+.-..+.+|-|+-|+|||||.+++.+-
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 221 11223345789999999999999998753
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=90.45 Aligned_cols=96 Identities=27% Similarity=0.408 Sum_probs=70.2
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-ccchhhccccccCCCC-CccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-LIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-li~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
...+|||+|||.|.++..| . . -+|+.+|.++.++..+.++. -+..++.-.+.+ ++| .+||+|.+.+++....
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~--~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-P--Y--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEAL-PFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-C--C--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSC-CSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC-C--C--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccC-CCCCCcEEEEEEcChhhhcC
Confidence 3568999999999999998 2 2 15566677778888888873 122222111222 244 7999999988876544
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+...+|.|+.|+|||||.+++.+.
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEec
Confidence 578999999999999999999853
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=89.65 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=83.4
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
...+|||+|||.|.++..|++.. .+|+.+|.++..+..+.++ |+ +-+++ |+.+.+.. ...||+|-+++
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~ 108 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-IPDIDIAVVGG 108 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-SCCEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-CCCCCEEEECC
Confidence 35799999999999999998876 4667777776777777663 33 22222 22221211 14899999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 601 (636)
.+. .+..+|-++.|+|+|||.+++.+. .+....+.++++...|++...
T Consensus 109 ~~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 109 SGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp CTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred chH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 652 468999999999999999999764 567778888888777766543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=90.48 Aligned_cols=129 Identities=9% Similarity=0.082 Sum_probs=84.9
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCC--CCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTY--PRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~y--p~t~Dl~H~~~ 547 (636)
..+|||+|||.|.++.+|+.. +- .+|+.+|.++.++..+.++ |+ +-+++ ..+..+ +.+||+|.+++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ---SRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE---CCTTTSCCCSCEEEEECSC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEe---cchhhCCccCCcCEEEEec
Confidence 358999999999999998764 22 2556667666777777654 44 23332 222233 27899998854
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEec--cCCCCCCcceEEEEEec
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD--HENGPRQREKILFANKK 619 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~--~e~~~~~~~~~l~~~K~ 619 (636)
+ ...+.++-++-|+|+|||++++......-+.++++.+ .|+..... .-....+...+++++|.
T Consensus 141 ~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 141 F-------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp S-------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3 4568999999999999999999866555556666655 67654311 11122245677777764
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=90.68 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=72.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc----hhhccccccC--CCC-Cccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG----TYQNWCEAMS--TYP-RTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~----~~~~~ce~~~--~yp-~t~Dl~H~ 545 (636)
..+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++ |+-. -+.-.+..+. ..+ .+||+|.+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 56999999999999999987521 02566677777888888776 2210 1111122222 222 79999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD 582 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~ 582 (636)
..+|... ..-++..+|-++-|+|||||.+++.+..+
T Consensus 109 ~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 109 IEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp ESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 8888755 22345789999999999999998886543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6e-08 Score=99.63 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=69.6
Q ss_pred CCcceEeeecccchhhhhh----hcC--CCeEEEEecCCCCCccchHHHHhh-----cccchhhccc----cccC-----
Q 006662 475 GRYRNLLDMNAYLGGFAAA----LVD--DPLWVMNTVPVEAKINTLGVIYER-----GLIGTYQNWC----EAMS----- 534 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~----l~~--~~v~~mnv~~~~~~~~~l~~~~eR-----gli~~~~~~c----e~~~----- 534 (636)
....+|||+|||.|.++.. |.. ..+ ...++.+|.+..++..+.++ |+-.+--.|. +.+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 3466899999999986643 322 233 23457778888899988876 3311111121 2232
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 535 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 535 ~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++ .+||+|+|..++-... +.+..|.||-|+|||||++++..
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 243 8999999977776554 56899999999999999999963
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-07 Score=90.87 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=71.8
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-----cchhh-ccccccCCCCCccceeeecc-ccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----IGTYQ-NWCEAMSTYPRTYDLIHADS-IFS 550 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~-~~ce~~~~yp~t~Dl~H~~~-~fs 550 (636)
.+|||+|||.|.++..|++. .+|+.+|.++.++..+.++.- +...+ |..+ + ++|.+||+|.+.. ++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-L-ELPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-C-CCSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-c-CCCCCcCEEEEeCCchh
Confidence 78999999999999999887 477788888788888877631 22222 2211 1 2458999999865 666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
...+.-+...+|-++-|+|||||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5555556778999999999999999984
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=98.32 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=75.8
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccccccC--CCC-
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMS--TYP- 537 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~--~yp- 537 (636)
.++..+..-....+|||+|||.|.++..|++. + ..|+.+|.++.++..+.++ |+-+-+.-.+..+. ++|
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34444441145779999999999999999876 4 3566677777788877764 44221111122222 254
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+||+|.+.++|... +...+|-|+.|+|||||.+++.+
T Consensus 184 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 184 GAVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp TCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999998887754 28999999999999999999974
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-07 Score=102.77 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=77.8
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC-CC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP-YP 279 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp-f~ 279 (636)
+..++...++. +|||+|||+|..+..+++. ...++++ |+++.+++.++++ +..+.+...|...++ +.
T Consensus 93 ~a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~Av---Dis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 93 VGVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLAN---EVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEE---CSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH
T ss_pred HHHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc
Confidence 34455555555 9999999999999999976 2456666 8899998887654 555777777776665 34
Q ss_pred CCCeeEEEe----c--cccc-------ccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHC----S--RCLI-------PWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~----s--~~L~-------h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|++ + .++. .|..+ ...++.++.++|||||+|++++.
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 678999995 1 1111 11111 15689999999999999999875
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-07 Score=97.01 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-------CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-------ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-------v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
...+|||+|||+|.++..+++.. ..+.++ |+++.+++.|+.+ +..+.+..+|... +.+.+.||+|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~Gi---Di~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~I 205 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGV---DVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVV 205 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEE---ESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEE---ECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEE
Confidence 34589999999999999888752 344444 8888888888653 5567788877655 3346789999
Q ss_pred EecccccccccCh-----------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQYD-----------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d~-----------------~~~L~el~RvLKPGG~Liis~p 321 (636)
+++..+.++..+. ..++.++.+.|+|||++++..|
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 9987764332111 2579999999999999999986
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-07 Score=89.25 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp 277 (636)
+.+.+++ .++. +|||||||+|.++..+++.+. .++.+ |+++.+++.|+++ +. .+.+...|... +
T Consensus 7 ~~l~~~v--~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~av---Di~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~ 78 (225)
T 3kr9_A 7 ELVASFV--SQGA--ILLDVGSDHAYLPIELVERGQIKSAIAG---EVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-A 78 (225)
T ss_dssp HHHHTTS--CTTE--EEEEETCSTTHHHHHHHHTTSEEEEEEE---ESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-G
T ss_pred HHHHHhC--CCCC--EEEEeCCCcHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEEECchhh-h
Confidence 3445544 2343 899999999999999999863 34445 8898988888754 44 37777777632 2
Q ss_pred CCCC-CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceE
Q 006662 278 YPSR-AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 278 f~~~-sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk 356 (636)
++.+ .||+|+.....-. -...++.+....|+|+|+|+++.. . ....+.+.....+|.
T Consensus 79 l~~~~~~D~IviaG~Gg~---~i~~Il~~~~~~L~~~~~lVlq~~------------~-------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 79 FEETDQVSVITIAGMGGR---LIARILEEGLGKLANVERLILQPN------------N-------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp CCGGGCCCEEEEEEECHH---HHHHHHHHTGGGCTTCCEEEEEES------------S-------CHHHHHHHHHHTTEE
T ss_pred cccCcCCCEEEEcCCChH---HHHHHHHHHHHHhCCCCEEEEECC------------C-------CHHHHHHHHHHCCCE
Confidence 3333 6999987553311 125788999999999999999843 0 123456667778897
Q ss_pred eecc
Q 006662 357 KLIQ 360 (636)
Q Consensus 357 ~v~~ 360 (636)
.+.+
T Consensus 137 i~~e 140 (225)
T 3kr9_A 137 IVAE 140 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=5e-08 Score=94.03 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=87.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhh-ccccccCCCC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
..+|||+|||.|.++..|++.+.- +|+.+|.++.++..+.++.- +-+.+ |.. .+ +++ .+||+|.+.++|.
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~-~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KL-DFPSASFDVVLEKGTLD 118 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SC-CSCSSCEEEEEEESHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cC-CCCCCcccEEEECcchh
Confidence 568999999999999999877531 56666777778888877631 22222 222 22 344 7999999988875
Q ss_pred cCC------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHH--hcCCCceEEeccCCCCCCcceEEEE
Q 006662 551 LYK------------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSIT--DGMEWEGRIADHENGPRQREKILFA 616 (636)
Q Consensus 551 ~~~------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~--~~~~W~~~~~~~e~~~~~~~~~l~~ 616 (636)
... +.-+...+|.|+-|+|||||.+++.+....- ....++ ....|.......+++. .-.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 195 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSGF--HFHLYLM 195 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGGG--CEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCcc--eEEEEEE
Confidence 332 1224578999999999999999998754321 122332 3446876654443332 3446666
Q ss_pred Ee
Q 006662 617 NK 618 (636)
Q Consensus 617 ~K 618 (636)
+|
T Consensus 196 ~~ 197 (215)
T 2pxx_A 196 HK 197 (215)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=93.76 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=74.2
Q ss_pred hhhccCCCCCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCCCcccee
Q 006662 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI 543 (636)
Q Consensus 467 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp~t~Dl~ 543 (636)
++..+.. ....+|||+|||.|.++..|.+. +. +|+.+|.++.++..+.++.- +-..+.=.+.++ .+.+||+|
T Consensus 25 l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v 99 (259)
T 2p35_A 25 LLAQVPL-ERVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLL 99 (259)
T ss_dssp HHTTCCC-SCCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEE
T ss_pred HHHhcCC-CCCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEE
Confidence 3333433 44678999999999999998765 32 34555666788888888721 112221112333 34899999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++..+|.... +.+.+|.|+.|+|||||++++..
T Consensus 100 ~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 100 YANAVFQWVP---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EEESCGGGST---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEeCchhhCC---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 9988777553 56899999999999999999985
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-07 Score=87.31 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=91.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCC-Cccceeeec-cccccC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHAD-SIFSLY 552 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp-~t~Dl~H~~-~~fs~~ 552 (636)
..+|||+|||.|.++..|.+.+. +|+.+|.++.++..+.++.- +..++ |..+ + ++| .+||+|.++ .++...
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~-~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-D-QISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-S-CCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-C-CCCCCceeEEEECCcHHhhc
Confidence 56899999999999999988754 66777777678887777631 22222 2221 1 244 789999997 455543
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCceEEeccC--CCC---CCcceEEEEEec
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSITDGMEWEGRIADHE--NGP---RQREKILFANKK 619 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e--~~~---~~~~~~l~~~K~ 619 (636)
..-+...+|.++-|+|+|||.+++..... ....+.++++...+++...... ..+ ..+.-+++++|+
T Consensus 122 -~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 -AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp -CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred -ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 22235789999999999999999975432 4567777777777776643221 111 234557777774
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-07 Score=92.09 Aligned_cols=163 Identities=12% Similarity=0.013 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--c
Q 006662 451 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--I 523 (636)
Q Consensus 451 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i 523 (636)
....+.|.+++..-..++..+.. ....+|||+|||.|..+..|+.. +- ..|+.+|.++.++.++.+. |+ +
T Consensus 56 ~~~~~~~~~~~~ds~~~l~~~~~-~~~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v 132 (249)
T 3g89_A 56 RGEEEVVVKHFLDSLTLLRLPLW-QGPLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGA 132 (249)
T ss_dssp -CHHHHHHHHHHHHHGGGGSSCC-CSSCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CCHHHHhhceeeechhhhccccc-CCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCce
Confidence 34456777766543343433333 34678999999999998887653 22 2455667666777776654 55 3
Q ss_pred chhhccccccCC---CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---CHHHHHHHHHHHhcCCCc
Q 006662 524 GTYQNWCEAMST---YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---DVDILVKIKSITDGMEWE 597 (636)
Q Consensus 524 ~~~~~~ce~~~~---yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~~~~~~~~~~~~~~~W~ 597 (636)
-+++.-.+.+.. ++.+||+|-+..+ .+++.++-++-|+|||||.+++-. ..+.+..+++.++.+.|+
T Consensus 133 ~~~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 133 RALWGRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGR 205 (249)
T ss_dssp EEEECCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEE
T ss_pred EEEECcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCe
Confidence 344422233332 3479999988543 467899999999999999998854 356777777778888887
Q ss_pred eEEec-c-CCCCCCcceEEEEEecCCCC
Q 006662 598 GRIAD-H-ENGPRQREKILFANKKYWTA 623 (636)
Q Consensus 598 ~~~~~-~-e~~~~~~~~~l~~~K~~w~~ 623 (636)
..-.. - -.+....-.+++.+|.=.++
T Consensus 206 ~~~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 206 LGEVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 65322 1 11222334566677755444
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-07 Score=89.60 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ |+ +..+. |. +.+ .+| .+||+|.+. |..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADF-DIVADAWEGIVSI--FCH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTB-SCCTTTCSEEEEE--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhc-CCCcCCccEEEEE--hhc
Confidence 999999999999999998864 777788887888888776 33 22222 21 222 244 799999883 332
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+ ..-+...+|.++-|+|||||.+++.+
T Consensus 105 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 105 L-PSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp C-CHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 33356789999999999999999984
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-07 Score=94.35 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=72.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh--ccccccCCCC-CccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ--NWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~--~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
..+|||+|||.|.++..|.+.+. +|+.+|.++.++..+.++.. +.+. |. +.+ ++| .+||+|-+.+++-.+.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~-~~~~~~d~-~~~-~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGV-KNVVEAKA-EDL-PFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTC-SCEEECCT-TSC-CSCTTCEEEEEECSSHHHHC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcC-CCEEECcH-HHC-CCCCCCEEEEEEcchhhhcc
Confidence 56899999999999999998864 67777888889999988865 2111 11 222 244 7999999876443332
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
. +...+|-|+.|+|||||.+++...
T Consensus 129 ~--~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 129 E--NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2 278999999999999999999754
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=93.21 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+.+.+|||||||+|.++..+. ....++.+ |++..++++++++ +.+..+.+.|....+.+. +||+|++.-++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~---DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIASVWGC---DIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCSEEEEE---ESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc-cCCeEEEE---eCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHH
Confidence 345699999999999999888 55555666 8899999888654 677888888887777654 89999999888
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEE
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++..........++...|+++|.++-.
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEEc
Confidence 555433334444888899999766554
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-07 Score=92.28 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=75.5
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCCCC-CccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
...+|||+|||.|.++.+|.+.+ .+++.+|.++.++..+.++.. ..++ |..+...+++ .+||+|.+.+++....
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 46799999999999999999886 467777887778888877753 2222 3332224555 8999999988887554
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+.+.+|.++-|+|+|||++++...
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 458999999999999999999753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-07 Score=96.00 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=74.5
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCC----CCCCeeEEEe
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPY----PSRAFDMAHC 288 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf----~~~sFDlV~~ 288 (636)
.+|||+|||+|.++..+++.+. .++++ |+++.+++.|+++ +. ++.+..+|...... ..++||+|++
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g~~~v~~v---D~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAGADEVIGI---DKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 4999999999999999999854 66666 8898888887644 44 57888888755421 2578999998
Q ss_pred ccccccc--------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRCLIPW--------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~L~h~--------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....... ..+...++.++.++|+|||+++++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 5432111 12235788999999999999999865
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-07 Score=91.91 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=89.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~ 546 (636)
...+|||+|||.|.++..|+++.-. +|+.+|.++.++..+.++ |+ +-+++ |..+....++ .+||+|-++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 3678999999999999999887432 677888877788777665 44 33333 4333333354 899999997
Q ss_pred cccccC-----------------CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSLY-----------------KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~~-----------------~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
--|... ...+.++.++.++-|+|||||.+++--..+.+..+.+.++...|...
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 554221 22356778999999999999999998777777888888888888765
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.7e-08 Score=95.04 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccc
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEA 532 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~ 532 (636)
..|......+..++..... ...+|||+|||.|.++..|++... +|+.+|.++.++..+.++.- +..++ |.. .
T Consensus 21 ~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~ 94 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRTP--EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-D 94 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-T
T ss_pred hhHHHHHHHHHHHHHHhcC--CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-H
Confidence 3455555544454433222 256899999999999999987643 56777887789988888731 22222 221 2
Q ss_pred cCCCCCccceeee-ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 533 MSTYPRTYDLIHA-DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 533 ~~~yp~t~Dl~H~-~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++ ++.+||+|.| .++|....+.-+...+|.++-|+|||||.+++.+
T Consensus 95 ~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 95 FR-LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CC-CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cc-cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 22 2689999995 4466654444466799999999999999999974
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-07 Score=99.36 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=78.0
Q ss_pred HHHhhccC--CCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC
Q 006662 208 IGKLINLK--DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP 277 (636)
Q Consensus 208 L~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp 277 (636)
+..++... ++. +|||+|||+|..+..+++. ...++++ |+++.+++.++++ +. ++.+...|...++
T Consensus 107 ~~~~L~~~~~~g~--~VLDl~aGpG~kt~~lA~~~~~~g~V~av---Dis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~ 181 (479)
T 2frx_A 107 PVAALFADGNAPQ--RVMDVAAAPGSKTTQISARMNNEGAILAN---EFSASRVKVLHANISRCGISNVALTHFDGRVFG 181 (479)
T ss_dssp HHHHHTTTTCCCS--EEEESSCTTSHHHHHHHHHTTTCSEEEEE---CSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred HHHHhCcccCCCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence 34445444 444 9999999999999999986 2456666 8899998887654 44 5778878877665
Q ss_pred C-CCCCeeEEEec------cccc-------ccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 Y-PSRAFDMAHCS------RCLI-------PWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f-~~~sFDlV~~s------~~L~-------h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
. .+++||+|++. .++. +|..+ ...+|.++.++|||||+|++++.
T Consensus 182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3 45789999972 1121 11110 14689999999999999999875
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.7e-07 Score=90.15 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=86.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cc-----hhhccc-cccCCCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IG-----TYQNWC-EAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~-----~~~~~c-e~~~~yp~t~Dl~H~~~~ 548 (636)
...+|||+|||+|+|+..|++.+. -.|+.+|.+++++..+..+.- +. .+...+ +.+.. .-||.+-++.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 356899999999999999998864 267778888889988766432 11 111111 22222 12344444445
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------------------H---HHHHHHHHHHhcCCCceEEeccC--
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------------------V---DILVKIKSITDGMEWEGRIADHE-- 604 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------------------~---~~~~~~~~~~~~~~W~~~~~~~e-- 604 (636)
|+. +..+|-|+-|+|||||.+++... . .....+.++++...|++.-.+..
T Consensus 113 ~~~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 113 FIS------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp SSC------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred hhh------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 543 37899999999999999998611 1 24566777788888887754432
Q ss_pred CCCC-CcceEEEEEec
Q 006662 605 NGPR-QREKILFANKK 619 (636)
Q Consensus 605 ~~~~-~~~~~l~~~K~ 619 (636)
.|+. +.|.++.++|.
T Consensus 187 ~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 187 KGGAGNVEFLVHLLKD 202 (232)
T ss_dssp CBTTTBCCEEEEEEES
T ss_pred CCCCCCHHHHHHHhhc
Confidence 2222 45677777773
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-07 Score=91.05 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.++++. .++.+..+|...+++
T Consensus 16 ~~~~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~ 90 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTAI---EIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 90 (244)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhCCCCCCC--EEEEEeCCchHHHHHHHHcCCeEEEE---ECCHHHHHHHHHhhccCCCeEEEEChHHhCCc
Confidence 44566777776655554 89999999999999999998777777 99999999988764 368889999999888
Q ss_pred CC-CCeeEEEecccc
Q 006662 279 PS-RAFDMAHCSRCL 292 (636)
Q Consensus 279 ~~-~sFDlV~~s~~L 292 (636)
++ ..| .|+++..+
T Consensus 91 ~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 91 PKNQSY-KIFGNIPY 104 (244)
T ss_dssp CSSCCC-EEEEECCG
T ss_pred ccCCCe-EEEEeCCc
Confidence 74 456 45555433
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=94.14 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=70.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
.+|||+|||+|.++..|++.+..++++ |+++.+++.|+++ +..+.+..+|...+... +||+|++......
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~~V~gv---D~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g- 365 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGFNVKGF---DSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAG- 365 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTC-
T ss_pred CEEEEeeccchHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccc-
Confidence 489999999999999999987777777 8899998888654 44578888888776432 8999998653311
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEe
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
....++..+. .|+|||.++++.
T Consensus 366 --~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 --LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp --SCHHHHHHHH-HHCCSEEEEEES
T ss_pred --hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1234666654 599999999994
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.8e-07 Score=96.33 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
.+.+++.+.+.+...++. +|||+|||+|.++..|++.+..++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 271 ~e~l~~~~~~~l~~~~~~--~VLDlgcG~G~~~~~la~~~~~V~gv---D~s~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVGV---EGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHhhcCCCCC--EEEECCCCCCHHHHHHHhhCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 445666666666544444 89999999999999999987777777 8899999888654 33 58888888766
Q ss_pred ----CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 ----LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 ----Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+++++++||+|++..-... . ..++..+.+ ++|++.++++.
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g---~-~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAG---A-AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTC---C-HHHHHHHHH-HCCSEEEEEES
T ss_pred HhhhhhhhcCCCCEEEECCCCcc---H-HHHHHHHHh-cCCCeEEEEEC
Confidence 3456678999998653311 1 345555543 78999999884
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-07 Score=96.78 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=85.7
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
....+|||+|||.|++++.++.+ + .-.|+.+|.++.++..+.++ |+ .-+.-.+.....+| .+||+|.+.++
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCC
Confidence 34789999999999987665322 1 13566667777888888776 66 32322333334455 89999987443
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH---H-HHH-HHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI---L-VKI-KSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~---~-~~~-~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.-+.+.++-|+-|+|||||.+++++.... + ..+ ....+ .|+....-+-.+. ....|.+++|
T Consensus 198 ------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 198 ------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp ------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTT-CCCEEEEEEE
T ss_pred ------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCC-cCcEEEEEEc
Confidence 24668999999999999999999974211 0 001 11222 5666654444333 3467888888
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=93.03 Aligned_cols=90 Identities=7% Similarity=0.019 Sum_probs=71.6
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
.+|||+|||+|.++.. ++....++++ |+++.+++.++++ +. ++.+..+|..... ++||+|++....
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~~~~V~~v---D~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~- 268 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKNAKKIYAI---DINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK- 268 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTTSSEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-
T ss_pred CEEEEccCccCHHHHh-ccCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-
Confidence 3899999999999999 8865666677 8898888887654 43 5788888887765 789999985322
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....++.++.++|+|||.+++...
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 224789999999999999999754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-07 Score=93.72 Aligned_cols=123 Identities=7% Similarity=-0.011 Sum_probs=82.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-----c---------------------------
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-----L--------------------------- 522 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-----l--------------------------- 522 (636)
....+|||+|||.|.+...++..+. -+|+.+|.++.++..+.++- -
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3467899999999999888887765 47888898888888776531 0
Q ss_pred ---cc-hhh-cccc--ccCCC-CCccceeeeccccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------
Q 006662 523 ---IG-TYQ-NWCE--AMSTY-PRTYDLIHADSIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------- 582 (636)
Q Consensus 523 ---i~-~~~-~~ce--~~~~y-p~t~Dl~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------- 582 (636)
|. +++ |..+ .+... ..+||+|-+..++... .+.-++..+|-+|-|+|||||++|+++...
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 00 111 2222 11112 2689999998777642 333456789999999999999999985211
Q ss_pred -----HHHHHHHHHhcCCCceE
Q 006662 583 -----ILVKIKSITDGMEWEGR 599 (636)
Q Consensus 583 -----~~~~~~~~~~~~~W~~~ 599 (636)
..+.+.+++..-..++.
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~ 233 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIE 233 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEE
Confidence 23466676666555544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-07 Score=96.02 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=73.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC----CCCCeeEEEec
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY----PSRAFDMAHCS 289 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf----~~~sFDlV~~s 289 (636)
..+|||+|||+|.++..+++....++++ |+++.+++.|+++ +. ++.+..+|...... ..++||+|++.
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~v---D~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAV---DSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEE---ESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 3489999999999999999874445555 8899998888654 33 37888888755421 25789999985
Q ss_pred ccccccc--------cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWG--------QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~--------~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.-..... .....++.++.++|+|||+++++..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4321111 2235788999999999999999975
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.4e-07 Score=89.09 Aligned_cols=141 Identities=10% Similarity=0.055 Sum_probs=79.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchh-hccccccCC---CCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTY-QNWCEAMST---YPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~-~~~ce~~~~---yp~t~Dl~H~~ 546 (636)
...+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++ |+ +-++ .|+.+.+.. .+.+||+|.++
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 367999999999999999987610 13556666665666666554 22 2222 244442222 23799999986
Q ss_pred cccccCC-------------CCcC----------HHHHHHHHhhcccCCcE-EEEEeCHHHHHHHHHHHh--cCCCceEE
Q 006662 547 SIFSLYK-------------DRCE----------MEDVLLEMDRILRPEGS-VIIRDDVDILVKIKSITD--GMEWEGRI 600 (636)
Q Consensus 547 ~~fs~~~-------------~~c~----------~~~~l~e~dRiLrPgG~-~i~~d~~~~~~~~~~~~~--~~~W~~~~ 600 (636)
--|.... .... +..++-++.|+|||||+ +++.-.......+.+++. ...|....
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEE
Confidence 5543211 1111 16888999999999999 777655555667777777 55554321
Q ss_pred eccCCCCCCcceEEEEEec
Q 006662 601 ADHENGPRQREKILFANKK 619 (636)
Q Consensus 601 ~~~e~~~~~~~~~l~~~K~ 619 (636)
.-. ...+.+++++++|.
T Consensus 189 ~~~--~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 189 KVK--DLRGIDRVIAVTRE 205 (215)
T ss_dssp EEE--CTTSCEEEEEEEEC
T ss_pred EEE--ecCCCEEEEEEEEc
Confidence 111 12245889998874
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-07 Score=92.76 Aligned_cols=126 Identities=15% Similarity=0.105 Sum_probs=89.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++.++++.+. +|+.+|.++..+..+.++ |+ +.+++ |+.+ .+| ..||+|.++.++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~---~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVANLYA 194 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEECCH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh---cCcCCCCCEEEECCcH
Confidence 46899999999999999988765 777778877888888775 43 22222 2222 243 789999986544
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
. .+..++-++-|+|||||++++++. ......+.++++...++....... +.-..++++|
T Consensus 195 ~------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~l~~~k 254 (254)
T 2nxc_A 195 E------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp H------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred H------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc----CCeEEEEEEC
Confidence 2 257899999999999999999853 345677888888877877644333 1234555554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.1e-07 Score=103.26 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=76.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHc----CC---CeEEEEecccc-CCCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALER----GV---PALIGVMASIR-LPYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~-Lpf~~~sFDlV~~s~ 290 (636)
.+|||+|||+|.++..++..+.. ++++ |+++.+++.|+++ +. .+.+..+|... ++...++||+|++..
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~~V~aV---D~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGARSTTTV---DMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CcEEEeeechhHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 38999999999999999988653 6666 8899999888754 43 47888888765 444567899999854
Q ss_pred ccc----------ccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 291 CLI----------PWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 291 ~L~----------h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
-.. ....+...++.++.++|+|||+|+++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 221 11223357899999999999999999763
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=96.97 Aligned_cols=109 Identities=19% Similarity=0.134 Sum_probs=76.7
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-C
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-Y 278 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f 278 (636)
+..++...++. +|||+|||+|..+..+++. ...++.+ |+++.+++.++++ +. ++.+...|...++ .
T Consensus 97 ~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~Av---Dis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 97 VGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTN---EIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH 171 (456)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEE---CSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred HHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence 44455555555 9999999999999999876 2456666 8898888877644 44 4677777776654 3
Q ss_pred CCCCeeEEEeccc---ccccccCh------------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRC---LIPWGQYD------------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~---L~h~~~d~------------------~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++||+|++..- .-.+..++ ..+|.++.++|||||+|++++-
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4578999997321 00111111 2679999999999999999875
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-07 Score=94.14 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~ 275 (636)
+.+...+.+.+ +.+.+|||||||+|-++..++.. ...++.+ |+++.++++++++ +++..+.+.|...
T Consensus 120 D~fY~~i~~~i----~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~---DId~~~le~a~~~l~~~g~~~~~~v~D~~~ 192 (281)
T 3lcv_B 120 DEFYRELFRHL----PRPNTLRDLACGLNPLAAPWMGLPAETVYIAS---DIDARLVGFVDEALTRLNVPHRTNVADLLE 192 (281)
T ss_dssp HHHHHHHGGGS----CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEE---ESBHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred HHHHHHHHhcc----CCCceeeeeccCccHHHHHHHhhCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCceEEEeeecc
Confidence 34444444443 22459999999999999998776 4455566 8899999888654 6777888777654
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
-+ +.+.||+|+++-++++........+.++...|+|+|.++-.
T Consensus 193 ~~-p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 193 DR-LDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp SC-CCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred cC-CCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEec
Confidence 44 56789999999988665433333333999999999988654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-08 Score=101.49 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=77.1
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPS 280 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~ 280 (636)
.++.+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.++++. .++.+..+|...++++.
T Consensus 17 ~~~~i~~~~~~~~~~--~VLDiG~G~G~~~~~l~~~~~~v~~i---d~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 17 VLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTSI---ELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEES---SSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCCCHHHHHHHHhCCeEEEE---ECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 445666666555444 89999999999999999988777777 88888877776542 34778888888888774
Q ss_pred -CCeeEEEecccccccc-----------cChHHHH----HHHHhcccCCcEEEEEe
Q 006662 281 -RAFDMAHCSRCLIPWG-----------QYDGLYL----IEVDRVLRPGGYWILSG 320 (636)
Q Consensus 281 -~sFDlV~~s~~L~h~~-----------~d~~~~L----~el~RvLKPGG~Liis~ 320 (636)
++| .|+++... +.. .....++ +.+.|+|+|||.+++..
T Consensus 92 ~~~f-~vv~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 92 KQRY-KIVGNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSEE-EEEEECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCCc-EEEEeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 66665422 111 1222333 66889999998877664
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-07 Score=89.05 Aligned_cols=99 Identities=20% Similarity=0.315 Sum_probs=71.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-----ccchhh-ccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-----LIGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-----li~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++..|.+..- +|+.+|.++.++..+.++- -+..++ |..+ + ++| .+||+|.++.++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-L-SFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-C-CSCTTCEEEEEEESCG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-C-CCCCCcEEEEEEcCch
Confidence 56899999999999999988754 6777777777888877662 122222 2221 2 244 799999998774
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
..+. .-+...+|.++-|+|||||.+++.+..
T Consensus 114 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4332 234578999999999999999998653
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-07 Score=94.55 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=84.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-c-------------------cchhhccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L-------------------IGTYQNWCEAMSTY 536 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l-------------------i~~~~~~ce~~~~y 536 (636)
..+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++- + -.-+.-.|..+...
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 46899999999999999999875 6888899989999987653 1 01111223333333
Q ss_pred C----CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE-EeC--------H---HHHHHHHHHHhcCCCceEE
Q 006662 537 P----RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII-RDD--------V---DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 537 p----~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~--------~---~~~~~~~~~~~~~~W~~~~ 600 (636)
| .+||+|-+.++|.... ..+.+.++-||-|+|||||.+++ +-. . -..+.+.+++.. .|++..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 2 7899999888776543 34567899999999999999964 311 0 123567777766 477764
Q ss_pred ec
Q 006662 601 AD 602 (636)
Q Consensus 601 ~~ 602 (636)
..
T Consensus 224 ~~ 225 (252)
T 2gb4_A 224 LE 225 (252)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=94.22 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=71.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCC------CC--Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMST------YP--RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~------yp--~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++..|++..- +|+.+|.++.++..+.++--..-+.-.+..+.. ++ ..||+|.+..+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 56799999999999999987643 667778887888888877421111111122222 22 24999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+.... .-+...+|-|+-|+|||||+++|.+
T Consensus 134 ~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 134 FHHIP-VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp STTSC-GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 77553 2356899999999999999988875
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-07 Score=96.74 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=69.4
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc---------cchhh-ccccccCCCCCccceeeec-c
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---------IGTYQ-NWCEAMSTYPRTYDLIHAD-S 547 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---------i~~~~-~~ce~~~~yp~t~Dl~H~~-~ 547 (636)
+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++-- +-++. |.. .+ +++.+||+|.+. .
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AF-ALDKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BC-CCSCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cC-CcCCCcCEEEECCc
Confidence 899999999999999999863 56777877788888887622 22222 222 22 236999998863 4
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.. .+.-++..+|-++-|+|||||.++|..
T Consensus 160 ~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 160 SINE-LDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-CCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4442 233346899999999999999999974
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=97.44 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf 278 (636)
...++.+.+++....+ .+|||+|||+|.++..++++ +..++++ |+++.+++.| ..+.+...|....+
T Consensus 25 ~~l~~~~~~~~~~~~~--~~vLD~gcGtG~~~~~~~~~~~~~~~i~gv---Di~~~~~~~a----~~~~~~~~D~~~~~- 94 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGV---EIDPKALDLP----PWAEGILADFLLWE- 94 (421)
T ss_dssp HHHHHHHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEE---ESCTTTCCCC----TTEEEEESCGGGCC-
T ss_pred HHHHHHHHHhhccCCC--CEEEECCCCChHHHHHHHHHhCCCCeEEEE---ECCHHHHHhC----CCCcEEeCChhhcC-
Confidence 4566677777654333 38999999999999999974 3444444 5565555555 35678888876654
Q ss_pred CCCCeeEEEeccccccccc---------Ch-------------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQ---------YD-------------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~---------d~-------------------~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+.||+|+++.-+..... +. ..++..+.++|+|||.+++..|
T Consensus 95 ~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 95 PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3468999999743322111 11 2568899999999999999987
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-07 Score=88.83 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=68.3
Q ss_pred cceEeeecccchhhh-hhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFA-AALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfa-a~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.+. ..+...+. +|+.+|.++.++..+.++ |. +-..+ |. +.+ ++| .+||+|.+.++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDI-RKL-PFKDESMSFVYSYGT 98 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT-TSC-CSCTTCEEEEEECSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECch-hhC-CCCCCceeEEEEcCh
Confidence 568999999999984 45555543 667778877888887765 22 22222 22 222 244 89999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+.... .-+...+|-++-|+|||||.+++.+
T Consensus 99 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 99 IFHMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 2456799999999999999999975
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-07 Score=97.06 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=71.6
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccCCCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~~yp~t~Dl~H~~~ 547 (636)
....+|||+|||+|.++..|++.+. -.|+.+|.+ +++..+.++ |+ +-+++.=.+.+ .+|..||+|.++.
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Iv~~~ 137 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-SLPEKVDVIISEW 137 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-CCSSCEEEEEECC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-CcCCcceEEEEcC
Confidence 3467899999999999999988754 256677777 777776554 43 23333111222 2458999999966
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+.......-.++.++-+++|+|+|||.+|+.
T Consensus 138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 5554444456788999999999999999885
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=91.37 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+...++. +|||||||+|.++..|++++..++++ |+++.+++.++++ ..++.+..+|...+++
T Consensus 36 ~~i~~~Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~~V~aV---Eid~~li~~a~~~~~~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANLTKDD--VVLEIGLGKGILTEELAKNAKKVYVI---EIDKSLEPYANKLKELYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCchHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHhccCCCeEEEECchhhCCc
Confidence 34667777777666655 99999999999999999987666666 7777777777654 3578999999999998
Q ss_pred CCCCeeEEEecccc
Q 006662 279 PSRAFDMAHCSRCL 292 (636)
Q Consensus 279 ~~~sFDlV~~s~~L 292 (636)
++.+||+|+++..+
T Consensus 111 ~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 111 NKLDFNKVVANLPY 124 (295)
T ss_dssp GGSCCSEEEEECCG
T ss_pred ccCCccEEEEeCcc
Confidence 88889999988654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-07 Score=87.69 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=60.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccch----HHHHhhcccc-hhhccccc--cCCCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTL----GVIYERGLIG-TYQNWCEA--MSTYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l----~~~~eRgli~-~~~~~ce~--~~~yp~t~Dl~H~~~~ 548 (636)
...+|||+|||+|.++..|++.-= .-.|+.+|.++.++ ..+.++.-+- +..|..+. +..++.+||+|.++.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 134 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI- 134 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence 356899999999999988876410 01455667765543 3333332121 22232221 133458999998862
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. ..-....+|.|+.|+|||||.+++.
T Consensus 135 -~---~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 -A---QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -C---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -c---ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1112345689999999999999997
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-07 Score=91.23 Aligned_cols=136 Identities=12% Similarity=0.198 Sum_probs=90.3
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++. +- .+|+.+|.++..+.++.++ |+ +-+++ |+.+.+. +.+||+|-++--
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CCEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 458999999999999998743 32 2566778777888887765 43 33333 4433221 478999998733
Q ss_pred cccC------------CCC----------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCC
Q 006662 549 FSLY------------KDR----------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 606 (636)
Q Consensus 549 fs~~------------~~~----------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 606 (636)
+... ... -.+..++-++-|+|+|||++++.........++++++...|+...... .
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~--d 263 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR--D 263 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE--C
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEe--c
Confidence 3211 111 134678999999999999999987666667777777776775432111 1
Q ss_pred CCCcceEEEEEe
Q 006662 607 PRQREKILFANK 618 (636)
Q Consensus 607 ~~~~~~~l~~~K 618 (636)
-.+.+++++++|
T Consensus 264 ~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 YGDNERVTLGRY 275 (276)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCCcEEEEEE
Confidence 225678888875
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-07 Score=93.14 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=82.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-cccccc----CCCCCccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAM----STYPRTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~----~~yp~t~Dl~H~~~~f 549 (636)
....+|||+|||+|.++..|++++. .|+.+|.++.++..+.++---..++ +|.+.- ...+.+||+|-++.++
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l 120 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLI 120 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCG
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhh
Confidence 3467899999999999999998854 5777888888999998874211122 333211 1224789999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----HHHHHHHHHHhcCCCceEE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~~~~~~~~~~~~~~W~~~~ 600 (636)
..+.. -+...+|.+|-|+| |||.++++-.. .-...++.....-.|....
T Consensus 121 ~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~ 173 (261)
T 3iv6_A 121 NRFTT-EEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFF 173 (261)
T ss_dssp GGSCH-HHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHE
T ss_pred HhCCH-HHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeee
Confidence 65432 24668999999999 99999998432 1233444545555554443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-07 Score=97.36 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=70.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cc----------hh-hccc------cccC-CCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IG----------TY-QNWC------EAMS-TYP 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~----------~~-~~~c------e~~~-~yp 537 (636)
..+|||+|||.|+....++..+. -+|+.+|.++.++..+.+|-- .+ .| ...+ +.+. .+|
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 56899999999987776665554 367888999999999988731 11 01 1111 2222 355
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 538 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 538 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
.+||+|-|..++-..-+.-.+..+|-|+-|+|||||++|++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999988654421111124689999999999999999998643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-07 Score=99.36 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=85.0
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh---------c-c----cchhh-ccccccC----
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER---------G-L----IGTYQ-NWCEAMS---- 534 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR---------g-l----i~~~~-~~ce~~~---- 534 (636)
...+|||+|||.|.++..|++. +- ..|+.+|.++.++..+.++ | + +-.++ |. +.+.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~-~~l~~~~~ 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI-ENLATAEP 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT-TCGGGCBS
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH-HHhhhccc
Confidence 3578999999999999888764 21 2566777777899988887 5 2 22232 22 2221
Q ss_pred -CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------------------HHHHHHHH
Q 006662 535 -TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-----------------------DILVKIKS 589 (636)
Q Consensus 535 -~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------------------~~~~~~~~ 589 (636)
++| .+||+|+++.+|.... +.+.+|-|+-|+|||||++++.+.. -....+.+
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR 236 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH
T ss_pred CCCCCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH
Confidence 555 7999999999888654 4689999999999999999997521 11266777
Q ss_pred HHhcCCCceE
Q 006662 590 ITDGMEWEGR 599 (636)
Q Consensus 590 ~~~~~~W~~~ 599 (636)
+++.-.++..
T Consensus 237 ll~~aGF~~v 246 (383)
T 4fsd_A 237 LVAEAGFRDV 246 (383)
T ss_dssp HHHHTTCCCE
T ss_pred HHHHCCCceE
Confidence 7777777543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.7e-08 Score=99.16 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=72.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc---------------------------------
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG--------------------------------- 521 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg--------------------------------- 521 (636)
...+|||+|||.|.++..|++. +- ..|+.+|.++.++..+.++-
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 4678999999999999999875 22 26677788777888887651
Q ss_pred -------------------------------ccchhh-ccccc---cCC-CCCccceeeeccccccCC---CCcCHHHHH
Q 006662 522 -------------------------------LIGTYQ-NWCEA---MST-YPRTYDLIHADSIFSLYK---DRCEMEDVL 562 (636)
Q Consensus 522 -------------------------------li~~~~-~~ce~---~~~-yp~t~Dl~H~~~~fs~~~---~~c~~~~~l 562 (636)
-+..++ |+... +.. .+.+||+|.|.+++...+ ....+..+|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 111111 22211 112 348999999988764322 445678999
Q ss_pred HHHhhcccCCcEEEEEe
Q 006662 563 LEMDRILRPEGSVIIRD 579 (636)
Q Consensus 563 ~e~dRiLrPgG~~i~~d 579 (636)
-++-|+|||||++||..
T Consensus 204 ~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 99999999999999974
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=81.93 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=88.6
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCC--
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKD-- 554 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~-- 554 (636)
.+|||+|||+|.++.+|+++. +|+.+|.++.++.. ... +.+++ +..+..++ .+||+|-++..|-....
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~--~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVR--ADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEE--CSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEE--CChhhhcccCCCCEEEECCCCccCCccc
Confidence 489999999999999999986 88888888777776 222 22222 12223444 89999999766653221
Q ss_pred ----CcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEE
Q 006662 555 ----RCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617 (636)
Q Consensus 555 ----~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 617 (636)
..+...++.++-|.| |||.+++.. .......+.++++...|+.......... .|++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 123346788888888 999999975 3456778888888888988755444333 45555554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.1e-07 Score=87.27 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=80.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CC-Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YP-RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp-~t~Dl~H~~ 546 (636)
...|||+|||.|.++.+|++. +- .+|+.+|.+..++..+.++ |+ +-+++ |..+ +.. +| .+||.|++.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred CceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence 457999999999999999764 22 3677888888888887765 54 33333 3322 322 44 789988763
Q ss_pred ccccc-------CCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSL-------YKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~ 599 (636)
|+. .+.+-..+.+|-++-|+|+|||.+++. |..+....+.+++....|...
T Consensus 116 --~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 --FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp --SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred --CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 321 112222478999999999999999986 566666666666655566543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=94.86 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---------------CCEEEEcCcCCchHHHHHHHHHc----
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---------------NILAVSFAPRDTHEAQVQFALER---- 262 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------------~v~vv~i~p~Dis~a~l~~A~er---- 262 (636)
...++.+.+++....+. +|||.|||+|.++..+++. ...+.++ |+++.+++.|+.+
T Consensus 157 ~~v~~~mv~~l~~~~~~--~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~---Ei~~~~~~lA~~nl~l~ 231 (445)
T 2okc_A 157 RPLIQAMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGV---DNTPLVVTLASMNLYLH 231 (445)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEE---ESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCC--EEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEE---eCCHHHHHHHHHHHHHh
Confidence 44666777776544443 8999999999999888753 1233444 7777888777643
Q ss_pred CC---CeEEEEeccccCCCCCCCeeEEEecccccccccC----------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 263 GV---PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY----------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 263 g~---~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d----------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+. ...+..+|....+.. ..||+|+++..+.+.... ...++..+.++|||||++++..|
T Consensus 232 g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 232 GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 44 466777887766644 489999998766432111 13789999999999999999976
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=88.75 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=69.2
Q ss_pred HHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-C--eEEEEecCCCCCcc------chHHHHhh----cc---cch
Q 006662 462 TYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-P--LWVMNTVPVEAKIN------TLGVIYER----GL---IGT 525 (636)
Q Consensus 462 ~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~--v~~mnv~~~~~~~~------~l~~~~eR----gl---i~~ 525 (636)
..+..++..+.. ....+|||+|||.|.++..|++. + . +|+.+|.++. ++..+.++ |+ +.+
T Consensus 30 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~g~~~---~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~ 105 (275)
T 3bkx_A 30 AHRLAIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSG---HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105 (275)
T ss_dssp HHHHHHHHHHTC-CTTCEEEEESCTTSHHHHHHHHHHCTTC---EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEE
T ss_pred HHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEE
Confidence 344445444433 34678999999999999999865 1 3 3444455433 77776555 33 222
Q ss_pred hh-c-cccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 526 YQ-N-WCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 526 ~~-~-~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+ | ....-.++| .+||+|++.+++....+ .+.++-.+.++|+|||++++.+
T Consensus 106 ~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp ECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EECChhhhccCCCCCCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 22 2 211222344 89999999888865443 3555556666666799999974
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-07 Score=94.40 Aligned_cols=122 Identities=9% Similarity=0.053 Sum_probs=79.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc------------------ccc-------------
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG------------------LIG------------- 524 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg------------------li~------------- 524 (636)
...+|||+|||.|.++..+...+. -+|+.+|.++.++..+.++- +-|
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 357899999999996554444322 26777888888888766520 111
Q ss_pred -----hhh-ccccccC----CCC-CccceeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEEeCH-----------
Q 006662 525 -----TYQ-NWCEAMS----TYP-RTYDLIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIRDDV----------- 581 (636)
Q Consensus 525 -----~~~-~~ce~~~----~yp-~t~Dl~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d~~----------- 581 (636)
+.+ |..+..+ .+| .+||+|-+..+|...... -+...+|-|+-|+|||||++++.+..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 000 3222111 233 679999998877653322 35679999999999999999996311
Q ss_pred -----HHHHHHHHHHhcCCCceE
Q 006662 582 -----DILVKIKSITDGMEWEGR 599 (636)
Q Consensus 582 -----~~~~~~~~~~~~~~W~~~ 599 (636)
-....+.++++.-.++..
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEE
Confidence 134667777777666654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-07 Score=96.03 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=66.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccCCCC-Cccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
...+|||+|||.|.++..+++.+. -.|+.+|.+ .++..+.++ |+ +-+++.=.+.+ .+| ..||+|-+..
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEW 139 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECC
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChH-HHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcC
Confidence 356899999999999999988753 245566666 366666543 43 23333111222 355 8999999877
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVI 576 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i 576 (636)
+.......-.++.+|.++.|+|||||.+|
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 53333344457789999999999999998
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=90.26 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=82.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCC--CCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY--PRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~y--p~t~Dl~H~~~~fs 550 (636)
..+|||+|||+|+|+.++++..-- .|+.+|.++.++..+.++ |+-....-.+.....+ +.+||+|.++..+
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence 568999999999999999875431 466678777788777664 5532122222222223 5799999885443
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------HHHHHHHHHHHhcCCCceEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------VDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------~~~~~~~~~~~~~~~W~~~~ 600 (636)
....++-++-|+|||||.+++.+. .+....+.+.++...|++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 235788899999999999999643 24678888999999998876
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-07 Score=93.36 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=72.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCC--CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY--PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~y--p~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|++.+. .+|+.+|.++.++..+.++ |+ +...+ |.. .. ++ +.+||+|.+.
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GR-HMDLGKEFDVISSQ 140 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TS-CCCCSSCEEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcc-cc-ccCCCCCcCEEEEC
Confidence 56899999999999999887653 2567777777888887776 22 22222 221 22 33 4799999998
Q ss_pred cccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 547 SIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 547 ~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+++... .+.-+...+|-++-|+|||||.+++....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 776431 33345678999999999999999998643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=86.11 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=86.4
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----ccc---chhh-ccccccCCCC--Ccccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYP--RTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gli---~~~~-~~ce~~~~yp--~t~Dl~ 543 (636)
.++|||+|||.|.++.+|++. .. .|+.+|.++.++..+.++ |+- -++. |..+.+...+ .+||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 579999999999999999876 32 455667666788877766 552 2222 3333334444 499999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCCceEEeccCCCC
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKS----ITDGMEWEGRIADHENGP 607 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~~~ 607 (636)
.+++- .-..+.+|-++-|+|||||++++.+-. .....+++ +...-+|+..+.-.- |.
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~ 213 (248)
T 3tfw_A 141 FIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GT 213 (248)
T ss_dssp EECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-ST
T ss_pred EECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CC
Confidence 88542 224567899999999999999986421 12223333 344556766654111 21
Q ss_pred CCcceEEEEEec
Q 006662 608 RQREKILFANKK 619 (636)
Q Consensus 608 ~~~~~~l~~~K~ 619 (636)
...+.+.+++|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 235889999986
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=87.31 Aligned_cols=130 Identities=12% Similarity=0.215 Sum_probs=84.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccC-CCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMS-TYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~-~yp~t~Dl~H~~~ 547 (636)
..+|||+|||.|.++.+|++..- ...|+.+|.++.++..+.++ |+ +-+++ |..+.+. ..+.+||+|.++.
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 56899999999999999988310 23566667776777777654 43 23333 3333333 3468999998753
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------------HHHHHHHHHH----HhcCCCceEEeccCCC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-----------------VDILVKIKSI----TDGMEWEGRIADHENG 606 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------------~~~~~~~~~~----~~~~~W~~~~~~~e~~ 606 (636)
- .-....++-++-|+|||||.+++.+- ......++++ .+.-++...+...
T Consensus 151 ~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 221 (232)
T 3ntv_A 151 A------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI--- 221 (232)
T ss_dssp T------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS---
T ss_pred c------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc---
Confidence 2 33467899999999999999999321 1122333333 4445666665522
Q ss_pred CCCcceEEEEEec
Q 006662 607 PRQREKILFANKK 619 (636)
Q Consensus 607 ~~~~~~~l~~~K~ 619 (636)
.+.+.+++|+
T Consensus 222 ---~dG~~i~~k~ 231 (232)
T 3ntv_A 222 ---DDGLAISIKG 231 (232)
T ss_dssp ---TTCEEEEEEC
T ss_pred ---CCceEEEEEC
Confidence 3678888874
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=84.33 Aligned_cols=122 Identities=12% Similarity=0.150 Sum_probs=81.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp-~t~Dl~H~~~ 547 (636)
...|||+|||.|.++.+|++..- -.+|+.+|.++.++..+.++ |+ +-+++ |+.+ +.. +| .+||+|.++.
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 45799999999999999876510 13567777777788877664 44 22333 3332 332 44 7899999863
Q ss_pred ccccC-----CCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCceEE
Q 006662 548 IFSLY-----KDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 548 ~fs~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
..... ..+-..+.+|-++-|+|+|||.+++. |..+....+.+++....|....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 21111 11123468999999999999999996 4556677777776666676543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-07 Score=96.21 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=70.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc---cchhhccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL---IGTYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---i~~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++..|++.+. ..|+.+|.+ .++..+.+ .|+ +.+++.=.+.+ ++| .+||+|.+..+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWM 142 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCC
T ss_pred CCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccc
Confidence 57899999999999999988754 355666666 46666554 354 23333111222 456 89999999776
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.......-.++.+|.+++|+|||||.+|..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 665555667889999999999999999753
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.9e-07 Score=88.49 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=75.9
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CC-Cccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YP-RTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp-~t~Dl~H~ 545 (636)
.-..|||+|||.|.++.+|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |-.+-+.. +| .+||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 3568999999999999999754 21 2566778777888776654 54 22222 22222221 44 89999987
Q ss_pred ccccccCCCC-----cCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006662 546 DSIFSLYKDR-----CEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDG 593 (636)
Q Consensus 546 ~~~fs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 593 (636)
+......+.+ -.-+.+|-++-|+|||||.+++. |.....+.+.+++..
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 4222212222 22247999999999999999995 556667777776554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-06 Score=88.50 Aligned_cols=87 Identities=17% Similarity=0.070 Sum_probs=58.0
Q ss_pred cEEEEeCCCC------cHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCCCeEE-EEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGV------ASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALI-GVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGt------G~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~~~~~-~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||+|||+ |. ..++++ +..++++ |+++. + ..+.+ .++|...++++ ++||+|+++
T Consensus 65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gv---Dis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~Vvsn 130 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDS---DLNDF-V-------SDADSTLIGDCATVHTA-NKWDLIISD 130 (290)
T ss_dssp CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEE---ESSCC-B-------CSSSEEEESCGGGCCCS-SCEEEEEEC
T ss_pred CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEE---ECCCC-C-------CCCEEEEECccccCCcc-CcccEEEEc
Confidence 4999999944 76 333332 3344444 44443 1 24567 88898887765 689999996
Q ss_pred ccccccc-----c-----C-hHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWG-----Q-----Y-DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~-----~-----d-~~~~L~el~RvLKPGG~Liis~p 321 (636)
... ++. + + ...+++++.|+|||||.|++..+
T Consensus 131 ~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 131 MYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 432 211 0 1 14789999999999999999764
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=85.66 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=83.0
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC----Cccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP----RTYD 541 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp----~t~D 541 (636)
..+|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ +-+.+ |..+.+..++ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 568999999999999999876 32 456667666777776654 55 22222 3223222222 5799
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKS----ITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~ 605 (636)
+|.+++..+ ..+.+|-++-|+|||||.+++.+.. .....+++ +...-+|+..+.-.-
T Consensus 136 ~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~- 208 (223)
T 3duw_A 136 FIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV- 208 (223)
T ss_dssp EEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE-
T ss_pred EEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc-
Confidence 998865422 4568999999999999999986321 11223333 334446666654330
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
+..+.+.+++++|+
T Consensus 209 ~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 209 GSKGYDGFIMAVVK 222 (223)
T ss_dssp ETTEEEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 11235778888763
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=82.28 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=84.0
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cchhhccccccCC--CC-Cccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMST--YP-RTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~~~ce~~~~--yp-~t~Dl~H~~~~f 549 (636)
+....|||++||. +.+|.++.++..+.+|-- +...+.=.+.+.. +| .+||+|.+..++
T Consensus 11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 4478999999985 126777789998888741 2222211123333 44 899999997766
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCceEEeccCCCCCC----------
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRIADHENGPRQ---------- 609 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~~~~e~~~~~---------- 609 (636)
... ..+.+.+|.|+-|+|||||++++.+... ....+.+.++.-.+ +.+.+....+..
T Consensus 74 ~~~--~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~ 150 (176)
T 2ld4_A 74 GST--TLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREH 150 (176)
T ss_dssp TCC--CCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHH
T ss_pred hhc--ccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHH
Confidence 543 1345899999999999999999975321 14566666665555 443332211111
Q ss_pred --------cceEEEEEecCCCCCC
Q 006662 610 --------REKILFANKKYWTAPA 625 (636)
Q Consensus 610 --------~~~~l~~~K~~w~~~~ 625 (636)
.-.+++++|+-|..++
T Consensus 151 ~g~~~~~~~~~~~~a~Kp~~~~gs 174 (176)
T 2ld4_A 151 LGHESDNLLFVQITGKKPNFEVGS 174 (176)
T ss_dssp TCCCCSSEEEEEEEEECCCSSCCS
T ss_pred hcccCCceEEEEEeccCCcccccC
Confidence 1458899999887654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-07 Score=90.19 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=76.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCC-CCccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTY-PRTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~y-p~t~Dl~H~~~~fs~~~ 553 (636)
..+|||+|||.|.++.+|++.+. .|+.+|.++.++..+.++.- +.+++ |+.+.++.- +.+||+|.+.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence 46899999999999999998853 67777888889999988822 22222 443333322 4799999984
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCce
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~ 598 (636)
-+...+|.++.|+|||||.++..........+.+.+....++.
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 2456889999999999999994432222334455555544443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.6e-07 Score=88.76 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=69.4
Q ss_pred ceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhhcc---cchhh-ccccc--cCCCC-Cccceeee
Q 006662 478 RNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEA--MSTYP-RTYDLIHA 545 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~--~~~yp-~t~Dl~H~ 545 (636)
.+|||+|||.|..++.|++. +- -.|+.+|.++.++..+. ++ +-+++ |..+. +...+ .+||+|++
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~--~~V~gvD~s~~~l~~a~--~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGID--CQVIGIDRDLSRCQIPA--SDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCC--CEEEEEESCCTTCCCCG--GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCC--CEEEEEeCChHHHHHHh--ccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 58999999999999998764 11 13344444444544443 33 22222 32221 12223 37999998
Q ss_pred ccccccCCCCcCHHHHHHHHhh-cccCCcEEEEEeCH-----HHHHHHHHHHhcC--CCce
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDR-ILRPEGSVIIRDDV-----DILVKIKSITDGM--EWEG 598 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dR-iLrPgG~~i~~d~~-----~~~~~~~~~~~~~--~W~~ 598 (636)
++. + -+.+.+|.|+.| +|||||++++.|.. .....+.++++.. .++.
T Consensus 159 d~~----~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA----H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS----C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCc----h--HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 654 1 267889999998 99999999997631 1123677777776 4554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-07 Score=85.10 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=69.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+.+...+..||+|.++..
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 56899999999999999988754 4667778877788877654 33 22222 333323334577999999766
Q ss_pred cccCCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006662 549 FSLYKDRCEMEDVLLEMD--RILRPEGSVIIRDDV 581 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 581 (636)
|.. ...+.++.++. |+|+|||.+++....
T Consensus 110 ~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 110 YAK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 532 23466677776 999999999997543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-06 Score=85.28 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=83.0
Q ss_pred cceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-----Cccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTYD 541 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-----~t~D 541 (636)
..+|||+|||.|.++.+|++. + - ..|+.+|.++.++..+.++ |+ +-+++ |..+.+..++ .+||
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 458999999999999999875 1 1 2455666666777777665 54 22222 3333333333 7899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKS----ITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~ 605 (636)
+|.+++. .-....++-++-|+|||||++++.|-. .....+++ +...-+|+..+.-.
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 214 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI-- 214 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc--
Confidence 9987542 234678899999999999999997432 11223333 33444566665422
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
.+.+++++|+
T Consensus 215 ----~dG~~~~~k~ 224 (225)
T 3tr6_A 215 ----GDGLTLARKK 224 (225)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCccEEEEEC
Confidence 4578888874
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=86.04 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=76.6
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----------cc--cchhh-ccccccCC-CC-Cc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----------GL--IGTYQ-NWCEAMST-YP-RT 539 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----------gl--i~~~~-~~ce~~~~-yp-~t 539 (636)
.-..|||+|||.|.++.+|++. +- .+|+.+|.+..++..+.++ |+ +-+++ |.-+.+.. +| .+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~--~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD--TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT--SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3568999999999999999865 22 3677778887888877543 33 22222 22111221 44 89
Q ss_pred cceeeecccccc-------CCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCC
Q 006662 540 YDLIHADSIFSL-------YKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGME 595 (636)
Q Consensus 540 ~Dl~H~~~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~ 595 (636)
||.|.+. |.. .+.|...+.+|-++-|+|||||.+++. |..+....+.+.+....
T Consensus 124 ~D~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 124 LTKMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp EEEEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred eeEEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 9998752 321 122333468999999999999999985 66677777777665543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-07 Score=92.26 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=72.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-------------cchhhccccccC---CC---C
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-------------IGTYQNWCEAMS---TY---P 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-------------i~~~~~~ce~~~---~y---p 537 (636)
..+|||+|||.|.++..|.+.+. -+|+.+|.++.++..+.++-- +..++.=++.+. .+ +
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 56899999999999999987653 366777887788888877621 112221122222 24 2
Q ss_pred CccceeeeccccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 538 RTYDLIHADSIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
.+||+|-+..++... .+.-+...+|.++-|+|||||.++++...
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999987665432 33334578999999999999999998643
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.7e-06 Score=90.19 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=65.1
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-------------------CCEEEEcCcCCchHHHHHHHH--H--------c----CCC
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-------------------NILAVSFAPRDTHEAQVQFAL--E--------R----GVP 265 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------------~v~vv~i~p~Dis~a~l~~A~--e--------r----g~~ 265 (636)
..+|+|+|||+|..+..+... .+...|+...|.+.-...... + + +.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999888877321 122345555665433322221 0 0 011
Q ss_pred eEEEEec-cccCCCCCCCeeEEEecccccccccCh--------------------------------------HHHHHHH
Q 006662 266 ALIGVMA-SIRLPYPSRAFDMAHCSRCLIPWGQYD--------------------------------------GLYLIEV 306 (636)
Q Consensus 266 ~~~~~~d-~~~Lpf~~~sFDlV~~s~~L~h~~~d~--------------------------------------~~~L~el 306 (636)
....+.. ...-.||+++||+|+++.+| ||..+. ..+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 23345889999999999999 886522 2468888
Q ss_pred HhcccCCcEEEEEeC
Q 006662 307 DRVLRPGGYWILSGP 321 (636)
Q Consensus 307 ~RvLKPGG~Liis~p 321 (636)
.+.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999864
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-06 Score=83.83 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=78.3
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--c
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--I 523 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i 523 (636)
+...++...+.+-.+... ... ....+|||+|||+|.++.++++.+. -.|+.+|.++.++..+.++ |+ +
T Consensus 22 ~rp~~~~~~~~l~~~l~~---~~~-~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v 95 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTA---RRD-LTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGA 95 (189)
T ss_dssp C---CHHHHHHHHHHHHH---HSC-CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCE
T ss_pred CccCcHHHHHHHHHHHHh---ccC-CCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 444455555555433321 111 2356899999999999997777653 2466667776788777664 43 2
Q ss_pred chhh-ccccccCCC-CCccceeeeccccccCCCCcCHHHHHHHHhh--cccCCcEEEEEeC
Q 006662 524 GTYQ-NWCEAMSTY-PRTYDLIHADSIFSLYKDRCEMEDVLLEMDR--ILRPEGSVIIRDD 580 (636)
Q Consensus 524 ~~~~-~~ce~~~~y-p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dR--iLrPgG~~i~~d~ 580 (636)
-+++ |+.+....+ +.+||+|-++..|... .-+.+.++.++.| +|+|||.+++...
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVD--SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 2333 322222224 4899999987665432 1356789999999 9999999999754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-06 Score=92.18 Aligned_cols=99 Identities=14% Similarity=0.291 Sum_probs=69.4
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccc-cccC---CCCCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMS---TYPRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~~---~yp~t~Dl~H~ 545 (636)
..++|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.--+ ..+. ++|.+||+|.+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence 4689999999999999999763 33 3444555 3677777765 4422111111 2233 47889999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..++..+.+. +...+|-++-|+|||||.++|.|
T Consensus 255 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 255 SQFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp ESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred echhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 8887655432 34588999999999999999975
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-06 Score=92.38 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=68.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++..+++.+. ..|+.+|.+ .++..+.++ |+ |-+++.-.+.+ .+| ..||+|.+..+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWM 114 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCC
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCc
Confidence 46899999999999999887753 245556666 566665554 54 23333111222 355 89999999776
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
+......-.++.+|.+++|+|+|||.+|+
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55444555778999999999999999984
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.15 E-value=8e-07 Score=87.29 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=83.8
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-----Ccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTY 540 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-----~t~ 540 (636)
.++|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ +-+++ |..+.+..++ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 578999999999999999873 32 455667766788777663 54 23332 3334444444 689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCceEEecc-CCCCCCcceEE
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADH-ENGPRQREKIL 614 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~-e~~~~~~~~~l 614 (636)
|+|.+++....+. ....++.++ |+|||||.+++.|- .+++..++ ..=.++...+.. .......+.+.
T Consensus 136 D~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dG~~ 208 (221)
T 3u81_A 136 DMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMKVVDGLE 208 (221)
T ss_dssp SEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCCCCCceE
Confidence 9999876554432 123566677 99999999999753 23333333 334566654421 11122457888
Q ss_pred EEEec
Q 006662 615 FANKK 619 (636)
Q Consensus 615 ~~~K~ 619 (636)
+++++
T Consensus 209 ~~~~~ 213 (221)
T 3u81_A 209 KAIYQ 213 (221)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88775
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.5e-06 Score=88.32 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=89.1
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccc-cccCCCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~~~yp~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++.+|.+. ++ .++.+|. +.++..+.++ |+-+-+.-.+ ..+...|..||+|.+.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEec
Confidence 45689999999999999999765 23 3444555 4677776653 4421111111 22334676699999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--H-----------------------HHHHHHHHHhcCCCceEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD--V--D-----------------------ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~-----------------------~~~~~~~~~~~~~W~~~~ 600 (636)
++-.+.+. ....+|-++-|+|||||+++|.|. . + ....++++++.-.++...
T Consensus 257 vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 257 VLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred cccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 87654321 224899999999999999999876 2 1 234566677777776653
Q ss_pred eccCCCCC--CcceEEEEEec
Q 006662 601 ADHENGPR--QREKILFANKK 619 (636)
Q Consensus 601 ~~~e~~~~--~~~~~l~~~K~ 619 (636)
...-.+.. -...++.++|+
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 336 ERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEECCSSCSSCEEEEEEEEC
T ss_pred EEECCCCcccCCcEEEEEEEC
Confidence 32222211 11278888885
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.1e-06 Score=76.61 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=75.6
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhhcccchhh-ccccccC------C-CC-Cccce
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMS------T-YP-RTYDL 542 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~------~-yp-~t~Dl 542 (636)
..+|||+|||.|.++.+|++. .|+.+-+.+ ++.. .. +...+ |+.+ .. . ++ .+||+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~------~~~~---~~-~~~~~~d~~~-~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP------MDPI---VG-VDFLQGDFRD-ELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC------CCCC---TT-EEEEESCTTS-HHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc------cccc---Cc-EEEEEccccc-chhhhhhhccCCCCceeE
Confidence 569999999999999998764 234433333 2211 11 12221 2221 11 0 44 78999
Q ss_pred eeeccccccCCCC-c-------CHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEE-ec-cCCCCCCcc
Q 006662 543 IHADSIFSLYKDR-C-------EMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRI-AD-HENGPRQRE 611 (636)
Q Consensus 543 ~H~~~~fs~~~~~-c-------~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~-~~-~e~~~~~~~ 611 (636)
|.++..+...... - ....+|.++-|+|||||.+++.... .....+.+.++. .|+... .. ........|
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSRE 170 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCE
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCce
Confidence 9998877543221 0 0158899999999999999997432 223334444333 255432 22 222333568
Q ss_pred eEEEEEe
Q 006662 612 KILFANK 618 (636)
Q Consensus 612 ~~l~~~K 618 (636)
..+++++
T Consensus 171 ~~~~~~~ 177 (180)
T 1ej0_A 171 VYIVATG 177 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 8888876
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.1e-06 Score=84.59 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+...++. +|||||||+|.++..|++++..++++ |+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~av---Eid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTD--TLVEIGPGRGALTDYLLTECDNLALV---EIDRDLVAFLQKKYNQQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSSEEEEE---ECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccccHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence 34566777777666655 99999999999999999998777777 88999999887653 468899999988876
Q ss_pred CC----CCeeEEEecc
Q 006662 279 PS----RAFDMAHCSR 290 (636)
Q Consensus 279 ~~----~sFDlV~~s~ 290 (636)
++ +.|| |+++.
T Consensus 90 ~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGSCCSSCEE-EEEEC
T ss_pred HHhccCCCeE-EEecC
Confidence 53 5688 66654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.10 E-value=8.4e-06 Score=79.98 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=75.2
Q ss_pred CcceEeeecccchhhhhhhcCC--C-eEEEEecCCCCCccchHHHHhhc----ccchhh-cccc--ccCCCCCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--P-LWVMNTVPVEAKINTLGVIYERG----LIGTYQ-NWCE--AMSTYPRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~-v~~mnv~~~~~~~~~l~~~~eRg----li~~~~-~~ce--~~~~yp~t~Dl~H~ 545 (636)
...+|||+|||.|.++.+|++. + - .|+.+|.++.++..+.++- -+-.++ |..+ .+...+.+||+|-+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 4568999999999999998754 1 2 3344455555555443321 122222 3222 11234578999887
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------H--HHHHHHHHHhcCCCceEE-eccCCCCC-Ccce
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV---------D--ILVKIKSITDGMEWEGRI-ADHENGPR-QREK 612 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------~--~~~~~~~~~~~~~W~~~~-~~~e~~~~-~~~~ 612 (636)
+.. ..-....+|.++-|+|||||++++.-.. . .-..++++ ..- ++... .+.+ +. ...-
T Consensus 150 ~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~--~~~~~~~ 220 (227)
T 1g8a_A 150 DVA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLE--PYEKDHA 220 (227)
T ss_dssp CCC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECT--TTSSSEE
T ss_pred CCC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccC--cccCCCE
Confidence 543 1112235599999999999999995211 1 12455566 333 66542 2322 22 2345
Q ss_pred EEEEEec
Q 006662 613 ILFANKK 619 (636)
Q Consensus 613 ~l~~~K~ 619 (636)
+++++|+
T Consensus 221 ~~~~~~~ 227 (227)
T 1g8a_A 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6777763
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=85.00 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=69.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc----cchhh-ccccccCCC-CCc-cceeeec
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL----IGTYQ-NWCEAMSTY-PRT-YDLIHAD 546 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl----i~~~~-~~ce~~~~y-p~t-~Dl~H~~ 546 (636)
.+|||+|||+|.++..++.++. -.|+.+|.++.++..+.++ |+ +-+++ |..+..... +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 5899999999999998666643 3567778887888887764 33 22222 222222223 478 9999987
Q ss_pred cccccCCCCcCHHHHHHHH--hhcccCCcEEEEEeCHH
Q 006662 547 SIFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRDDVD 582 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~~ 582 (636)
..|. .-..+.++-++ -|+|||||.+++.....
T Consensus 133 ~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7754 23467888888 78999999999976543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.08 E-value=6.8e-07 Score=82.98 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=66.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC---Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP---RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp---~t~Dl~H~~~ 547 (636)
..+|||+|||.|.++.+|++... +|+.+|.++.++..+.++ |+ +-+++ |+.+.....+ .+||+|.++.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 46899999999999999988754 277778877788777654 32 22222 3222222222 3799999988
Q ss_pred ccccCCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006662 548 IFSLYKDRCEMEDVLLEMD--RILRPEGSVIIRDDV 581 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 581 (636)
.|. . ..+.++.++- |+|+|||.+++....
T Consensus 119 ~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA--M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 776 2 3355666666 999999999997543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.2e-06 Score=87.37 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=89.2
Q ss_pred ccCCCCCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccc-cccCCCCCccce
Q 006662 470 QLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYPRTYDL 542 (636)
Q Consensus 470 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~~~yp~t~Dl 542 (636)
.+.. ....+|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.-.+ ..+.++|..||+
T Consensus 164 ~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~ 238 (332)
T 3i53_A 164 KYDW-AALGHVVDVGGGSGGLLSALLTAHEDL---SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGG 238 (332)
T ss_dssp SSCC-GGGSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSE
T ss_pred hCCC-CCCCEEEEeCCChhHHHHHHHHHCCCC---eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcE
Confidence 3444 56789999999999999999763 32 2233355 4677766654 5422111111 223566778999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H------------HHHHHHHHHhcCCCceEE
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D------------ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~------------~~~~~~~~~~~~~W~~~~ 600 (636)
|.+..++-.+.+. ....+|-++-|+|||||+++|.|.. + ....++++++.-.++..-
T Consensus 239 v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 239 YVLSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317 (332)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEEehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 9998887655432 3468999999999999999997641 0 134566666666666553
Q ss_pred eccCCCCCCcceEEEEEe
Q 006662 601 ADHENGPRQREKILFANK 618 (636)
Q Consensus 601 ~~~e~~~~~~~~~l~~~K 618 (636)
...-. + ..|+.++|
T Consensus 318 ~~~~~-~---~~vie~r~ 331 (332)
T 3i53_A 318 AHPIS-Y---VSIVEMTA 331 (332)
T ss_dssp EEECS-S---SEEEEEEE
T ss_pred EEECC-C---cEEEEEee
Confidence 32221 1 56777765
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-06 Score=87.01 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=71.4
Q ss_pred hhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccCCCCC
Q 006662 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYPR 538 (636)
Q Consensus 467 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~~yp~ 538 (636)
++..+.. .. .+|||+|||.|.++.+|++. |- ..++..|. +.++..+.++ |+ +.... ...+..+|.
T Consensus 160 ~~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~ 232 (334)
T 2ip2_A 160 IPRLLDF-RG-RSFVDVGGGSGELTKAILQAEPS--ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVG--GDMLQEVPS 232 (334)
T ss_dssp HHHHSCC-TT-CEEEEETCTTCHHHHHHHHHCTT--CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEE--SCTTTCCCS
T ss_pred HHHhCCC-CC-CEEEEeCCCchHHHHHHHHHCCC--CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEec--CCCCCCCCC
Confidence 3333444 44 89999999999999999764 21 13444555 4677776654 33 22221 122335678
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.||+|.+..++..+.+. ....+|-++-|+|+|||+++|.|
T Consensus 233 ~~D~v~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp SCSEEEEESCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEEchhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 89999998888655322 33589999999999999999985
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.9e-06 Score=85.44 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=76.4
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh-----cc--cchhh-ccccccCCCC-Ccccee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER-----GL--IGTYQ-NWCEAMSTYP-RTYDLI 543 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR-----gl--i~~~~-~~ce~~~~yp-~t~Dl~ 543 (636)
....+|||+|||.|+++..|++. +- ..|+.+|.++..+..+.++ |+ +-+++ |.. ..+| .+||+|
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~---~~~~~~~fD~V 183 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA---DFISDQMYDAV 183 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT---TCCCSCCEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchh---ccCcCCCccEE
Confidence 44679999999999999999765 21 2456667776788877766 53 22222 322 2344 689998
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCce
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEG 598 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~ 598 (636)
-+ +--+...+|-++-|+|||||.+++.+... ....+.+.++...|..
T Consensus 184 i~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 184 IA--------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp EE--------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred EE--------cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 77 22344689999999999999999987543 5566666655555543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.9e-06 Score=86.44 Aligned_cols=137 Identities=20% Similarity=0.283 Sum_probs=89.0
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhcccccc-C-CCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAM-S-TYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~-~-~yp~t~Dl~H~~~~ 548 (636)
...+|||+|||.|.++.+|.+. +- ..++.+|.+ .++..+.++ |+-+-+.-.+..+ . .+|..||+|.+.++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPN--AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTT--CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCC--CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcch
Confidence 3579999999999999999865 21 255666777 777777665 4422111111222 2 45666999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------------------------HHHHHHHHHhcCCCceEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---------------------------ILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------------------------~~~~~~~~~~~~~W~~~~~ 601 (636)
+..... -+...+|-++-|+|+|||+++|.|... ....++++++.-.++..-.
T Consensus 242 l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 242 LHHFDV-ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hccCCH-HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 765422 234689999999999999999975210 1456667777777765543
Q ss_pred ccCCCCCCcceEEEEEec
Q 006662 602 DHENGPRQREKILFANKK 619 (636)
Q Consensus 602 ~~e~~~~~~~~~l~~~K~ 619 (636)
..-.+ ...+++++++
T Consensus 321 ~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 321 HSLPT---TQQQVIVAYK 335 (335)
T ss_dssp ECCTT---SSSEEEEEEC
T ss_pred EECCC---CceeEEEecC
Confidence 22222 3467777664
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=83.74 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=66.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++..|++.. -+|+.+|.++..+..+.++ |+ +.+.+ |..+.. .-+.+||+|.+++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~ 151 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTA 151 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEcc
Confidence 346789999999999999998873 3566667777788887765 43 22222 222211 1137899999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
.+..... ++-|+|||||.+++.-..
T Consensus 152 ~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 152 APPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp BCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred chhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 7754432 688999999999997543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.8e-06 Score=80.60 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=75.6
Q ss_pred CcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh-----cc--cchhh-ccccccCCCC-Ccccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER-----GL--IGTYQ-NWCEAMSTYP-RTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR-----gl--i~~~~-~~ce~~~~yp-~t~Dl~ 543 (636)
...+|||+|||.|.++.+|++. .. +|+.+|.++..+..+.++ |. +-+.+ |..+. ++| .+||+|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEE
Confidence 3679999999999999998765 22 455556666788887776 52 22222 33322 255 789998
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCc
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWE 597 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~ 597 (636)
-++ --+...+|-++.|+|+|||.+++.... +.+.++.+.++...|.
T Consensus 171 ~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 171 ALD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 872 224458899999999999999998764 3556666666666554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=81.77 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=69.6
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CC---EEEEcCcCCchHHHHHHHHHcCCCeEEEEecc
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NI---LAVSFAPRDTHEAQVQFALERGVPALIGVMAS 273 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v---~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~ 273 (636)
...+...+.++.+...+.++. +|||+|||+|.|+.+++++ ++ .++++. .|+....+.. ...+.++.....+.
T Consensus 56 rSRaA~KL~ei~ek~~l~~~~--~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG-vDl~~~pi~~-~~~g~~ii~~~~~~ 131 (277)
T 3evf_A 56 VSRGTAKLRWFHERGYVKLEG--RVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG-RDGHEKPMNV-QSLGWNIITFKDKT 131 (277)
T ss_dssp SSTHHHHHHHHHHTTSSCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCC-CTTCCCCCCC-CBTTGGGEEEECSC
T ss_pred cccHHHHHHHHHHhCCCCCCC--EEEEecCCCCHHHHHHHHhcCCCcceeEEEe-ccCccccccc-CcCCCCeEEEeccc
Confidence 333333444444444344444 8999999999999998876 32 222222 2321110000 00122334444444
Q ss_pred ccCCCCCCCeeEEEeccccc---ccccChH--HHHHHHHhcccCC-cEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLI---PWGQYDG--LYLIEVDRVLRPG-GYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~---h~~~d~~--~~L~el~RvLKPG-G~Liis~p 321 (636)
....++.+.||+|+|..+.. ++.+... .+|..+.++|+|| |.|++...
T Consensus 132 dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 132 DIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred eehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 55567788999999976552 1222211 3568889999999 99999865
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=81.67 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=80.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh-------cc---cchhh-ccccccC-----CC-CC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-------GL---IGTYQ-NWCEAMS-----TY-PR 538 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-------gl---i~~~~-~~ce~~~-----~y-p~ 538 (636)
...+|||+|||.|.++..|+++.- ..+|+.+|.++.++..+.++ |+ +-+++ |..+... .+ +.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 356899999999999998876520 14667777776777777653 33 22333 2222111 23 37
Q ss_pred ccceeeecccccc---------------CCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCce
Q 006662 539 TYDLIHADSIFSL---------------YKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 539 t~Dl~H~~~~fs~---------------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~ 598 (636)
+||+|-++--|.. +...+.++.++-++-|+|+|||.+++--..+.+..+.+.++.- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 8999999744322 1234668899999999999999999987777777777777664 653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=83.85 Aligned_cols=107 Identities=8% Similarity=-0.032 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L 276 (636)
..+++.+.+.+... + .+|||+|||+|.++..+++....++++ |+++.+++.|+++ +. ++.+..+|...+
T Consensus 200 ~~l~~~~~~~~~~~-~--~~vLDl~cG~G~~~l~la~~~~~V~gv---d~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~ 273 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-K--GDLLELYCGNGNFSLALARNFDRVLAT---EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 273 (369)
T ss_dssp HHHHHHHHHHTTTC-C--SEEEEESCTTSHHHHHHGGGSSEEEEE---CCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH
T ss_pred HHHHHHHHHHhhcC-C--CEEEEccCCCCHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence 34444555554332 2 479999999999999999876667777 8899998887643 43 578888776553
Q ss_pred C--CCC--------------CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 P--YPS--------------RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 p--f~~--------------~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. +.. .+||+|++..-.. .+..++.+.|+++|.+++...
T Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 274 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEES
T ss_pred HHHHhhccccccccccccccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEEC
Confidence 1 121 3799998754221 233567777788888888753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=85.49 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=74.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh------------cc--cchhh-ccccccCC-CC-Cc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER------------GL--IGTYQ-NWCEAMST-YP-RT 539 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR------------gl--i~~~~-~~ce~~~~-yp-~t 539 (636)
...|||+|||.|+|+.+|++..- -.+|+.+|.+..++..+.++ |+ +-+++ |..+.+.. ++ .+
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 56899999999999999976521 13566777776787777654 55 22222 22222222 44 67
Q ss_pred cceeeeccccccC-------CCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCC
Q 006662 540 YDLIHADSIFSLY-------KDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGMEW 596 (636)
Q Consensus 540 ~Dl~H~~~~fs~~-------~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~~W 596 (636)
+|.|.. .|+.- +.|-..+.+|.++.|+|+|||.+++ +|..+..+.+.+.+....+
T Consensus 129 ~d~v~~--~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 129 LSKMFF--CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEE--ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred cCEEEE--ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 887653 12211 1122226899999999999999998 5776666667666555443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-06 Score=84.75 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=58.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCC-ccchHHH---H----hhcccchhhccccccCCCC----Ccccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAK-INTLGVI---Y----ERGLIGTYQNWCEAMSTYP----RTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~-~~~l~~~---~----eRgli~~~~~~ce~~~~yp----~t~Dl~ 543 (636)
...|||+|||.|.++.+|++. +- .+|+.+|.+ +.+++++ . ++|+..+. -.+.....+| ..+|.+
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~--~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~-~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQN--TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV-FVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTT--EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEE-EECCBTTBCCGGGTTCEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEcCHHHhhhhccCeEEEE
Confidence 578999999999999999832 22 356777777 5666665 3 33552211 1112223334 334444
Q ss_pred eecccccc--CCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 544 HADSIFSL--YKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 544 H~~~~fs~--~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
+++-.+.. ...+-+.+.+|.|+-|+|||||.++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 44211110 01112235789999999999999999
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-06 Score=81.20 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=67.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCC---CCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY---PRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~y---p~t~Dl~H~ 545 (636)
..+|||+|||.|.++.++++.+. .+|+.+|.++.++..+.++ |+ +-+++ |+.+..... +.+||+|-+
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 56899999999999998877653 3566667766777766543 33 22333 433322222 478999998
Q ss_pred ccccccCCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006662 546 DSIFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRDDV 581 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 581 (636)
+..|.. -..+.++.++ .|+|+|||.+++....
T Consensus 123 ~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 123 DPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 777541 2446666666 9999999999997543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-06 Score=88.45 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=71.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc--------cchhhccccccCCC-CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL--------IGTYQNWCEAMSTY-PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl--------i~~~~~~ce~~~~y-p~t~Dl~H~~ 546 (636)
..+|||+|||.|+|+.+|+++ .|+.+-+.|.. ..+.++.+ +-.++. +..+..+ +.+||+|-|+
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~------~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd 147 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLG------VGGHEVPRITESYGWNIVKFKS-RVDIHTLPVERTDVIMCD 147 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCC------CSSCCCCCCCCBTTGGGEEEEC-SCCTTTSCCCCCSEEEEC
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECchhh------hhhhhhhhhhhccCCCeEEEec-ccCHhHCCCCCCcEEEEe
Confidence 578999999999999998875 45555555531 00111111 111100 1222334 4899999997
Q ss_pred cccccCCCCcCHH---HHHHHHhhcccCCc--EEEEEe----CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEE
Q 006662 547 SIFSLYKDRCEME---DVLLEMDRILRPEG--SVIIRD----DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617 (636)
Q Consensus 547 ~~fs~~~~~c~~~---~~l~e~dRiLrPgG--~~i~~d----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 617 (636)
..+......-+.. .+|-++.|+||||| .|++.. ..+++..++.+.+.+. .+.+...-+-....|..+||.
T Consensus 148 ~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~ 226 (265)
T 2oxt_A 148 VGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSR 226 (265)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESS
T ss_pred CcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEec
Confidence 5522111000001 27888999999999 999963 2322233333332221 223332222233467777774
Q ss_pred e
Q 006662 618 K 618 (636)
Q Consensus 618 K 618 (636)
+
T Consensus 227 ~ 227 (265)
T 2oxt_A 227 A 227 (265)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-06 Score=83.21 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=76.5
Q ss_pred CCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cccc---hhh-ccccccCCCC-Cccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLIG---TYQ-NWCEAMSTYP-RTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gli~---~~~-~~ce~~~~yp-~t~Dl 542 (636)
....+|||+|||.|.++.+|++. .. .|+.+|.++.++..+.++ |+-. +.+ |.. ..+| .+||+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D~ 165 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY---EGIEEENVDH 165 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG---GCCCCCSEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh---hccCCCCcCE
Confidence 34678999999999999999766 33 445557766788887776 5532 222 333 3355 78999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCC
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGME 595 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~ 595 (636)
|-+ +--+...+|-++.|+|+|||.+++.. ..+...++.+.++...
T Consensus 166 v~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 166 VIL--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp EEE--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred EEE--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 877 23344678999999999999999875 4556667777766665
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-06 Score=84.41 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=66.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhh-ccccccCCCCCccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++..|.+.. -+|+.+|.++.++..+.++.- +-+.+ |..+.+ +-+.+||+|.+++++.
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAP 145 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBS
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHH
Confidence 35689999999999999998865 366677777788888887731 22222 322211 1237899999987775
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
... -++-|+|||||.+++....
T Consensus 146 ~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 146 TLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp SCC---------HHHHHTEEEEEEEEEEECS
T ss_pred HHH---------HHHHHHcCCCcEEEEEEcC
Confidence 322 3789999999999998643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-05 Score=85.70 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC----------------------------------------CE
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----------------------------------------IL 242 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~----------------------------------------v~ 242 (636)
.....+..+....++. +|||++||+|.++..++..+ ..
T Consensus 182 ~lAa~ll~~~~~~~~~--~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGR--VLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHHTSCCCTTS--CEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHhhCCCCCC--eEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 3444555555444444 89999999999998887652 23
Q ss_pred EEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccccccccc---ChHHHHHHHHhcccC-
Q 006662 243 AVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ---YDGLYLIEVDRVLRP- 312 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKP- 312 (636)
++++ |+++.+++.|+++ ++ .+.+.+.|...++.+ .+||+|+++.-+..-.. +...+++++.++||+
T Consensus 260 V~Gv---Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 260 IYGY---DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp EEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 4555 8899999888754 44 478899998888765 58999999875522221 124567777777776
Q ss_pred -CcEEEEEeC
Q 006662 313 -GGYWILSGP 321 (636)
Q Consensus 313 -GG~Liis~p 321 (636)
||.+++..+
T Consensus 336 ~g~~~~iit~ 345 (385)
T 3ldu_A 336 KNWSYYLITS 345 (385)
T ss_dssp BSCEEEEEES
T ss_pred CCCEEEEEEC
Confidence 888888765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.02 E-value=9.8e-06 Score=77.60 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=72.0
Q ss_pred cceEeeecccchhhhhhhcCC-C-----eEEEEecCCCCCccchHHHHhhcccchhhccccccC----------------
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-----LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS---------------- 534 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-----v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~---------------- 534 (636)
..+|||+|||.|+++.+|+++ + |+.+-+.|... ..++.-...|+.+ ..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---------~~~v~~~~~d~~~-~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---------IPNVYFIQGEIGK-DNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---------CTTCEEEECCTTT-TSSCCC-----------C
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---------CCCceEEEccccc-hhhhhhccccccccccch
Confidence 468999999999999999764 2 44444444211 0121101112221 11
Q ss_pred --------CCC-CccceeeeccccccCCCC-cC-------HHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCC
Q 006662 535 --------TYP-RTYDLIHADSIFSLYKDR-CE-------MEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEW 596 (636)
Q Consensus 535 --------~yp-~t~Dl~H~~~~fs~~~~~-c~-------~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W 596 (636)
.+| .+||+|.+++.+...... -+ ...+|.++-|+|||||.+++..-. +....+...++..-.
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~ 172 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQ 172 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEE
T ss_pred hhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 034 689999997765432100 01 124788999999999999996321 223344444444322
Q ss_pred ceEEecc-CCCCCCcceEEEEEe
Q 006662 597 EGRIADH-ENGPRQREKILFANK 618 (636)
Q Consensus 597 ~~~~~~~-e~~~~~~~~~l~~~K 618 (636)
++.+... ...+...|..+||++
T Consensus 173 ~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 173 LVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEEECCCC-----CCEEEEEEEE
T ss_pred eEEEECCcccCCcCceEEEEEec
Confidence 3333322 222345688999976
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.8e-06 Score=82.30 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=60.5
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc----cchh-hccccc--cCCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL----IGTY-QNWCEA--MSTYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~-~~~ce~--~~~yp~t~Dl~H~~~ 547 (636)
...+|||+|||.|.++.+|++. + .-.|+.+|.++.++..+.++-- +-.. .|..+. +..++.+||+|..+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~- 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED- 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-
Confidence 3568999999999999999765 3 1245556666667766655421 1111 122111 12234789987531
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+ ...-..+.+|.++.|+|||||.+++.
T Consensus 151 ~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 V----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp C----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 11112367899999999999999994
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-06 Score=84.22 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=70.7
Q ss_pred CcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh-------cc-------------------------
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER-------GL------------------------- 522 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR-------gl------------------------- 522 (636)
...+|||+|||+|.++..|++.- .-..+|+.+|.++.++..+.++ |+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 45789999999999999987650 0124778888887888777643 33
Q ss_pred ---cc-------------hhh-ccccccCCC------C-CccceeeeccccccCCC------CcCHHHHHHHHhhcccCC
Q 006662 523 ---IG-------------TYQ-NWCEAMSTY------P-RTYDLIHADSIFSLYKD------RCEMEDVLLEMDRILRPE 572 (636)
Q Consensus 523 ---i~-------------~~~-~~ce~~~~y------p-~t~Dl~H~~~~fs~~~~------~c~~~~~l~e~dRiLrPg 572 (636)
+. ..+ |+. ... + ..||+|-++-.|..... .-....++-++-|+|+||
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVF---DPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTT---CGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhccccccccccceeecccc---cccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 11 221 222 223 3 48999999866543322 123458999999999999
Q ss_pred cEEEEEeCH
Q 006662 573 GSVIIRDDV 581 (636)
Q Consensus 573 G~~i~~d~~ 581 (636)
|++++.+..
T Consensus 208 G~l~~~~~~ 216 (250)
T 1o9g_A 208 AVIAVTDRS 216 (250)
T ss_dssp CEEEEEESS
T ss_pred cEEEEeCcc
Confidence 999997654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.4e-06 Score=87.72 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=66.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccC--CCCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMS--TYPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~--~yp~t~Dl~H~~ 546 (636)
...+|||+|||.|.++..+++.+. -.|+.+|.+ .++..+.++ |+ +.+++ ..+. ..|..||+|-+.
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~---~d~~~~~~~~~~D~Ivs~ 123 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIP---GKVEEVSLPEQVDIIISE 123 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEE---SCTTTCCCSSCEEEEEEC
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEE---cchhhCCCCCceeEEEEe
Confidence 356899999999999999887754 244555555 355555443 54 33332 2222 346889999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.++..... -.+...+.++.|+|+|||.+++.
T Consensus 124 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 124 PMGYMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCBTTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred CchhcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 77664432 24667888999999999999964
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.8e-06 Score=81.76 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccc----hHHHHhhc-ccchhhcccccc--CCCCCccceee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINT----LGVIYERG-LIGTYQNWCEAM--STYPRTYDLIH 544 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~----l~~~~eRg-li~~~~~~ce~~--~~yp~t~Dl~H 544 (636)
....+|||+|||.|+++.+|++. .- .|+.+|.++.+ +..+.+|. +.-+..|-.... ...+..||+|.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence 44689999999999999888753 11 23444555444 34444442 222222322211 12246899998
Q ss_pred eccccccCCCCcCHHHHHHH-HhhcccCCcEEEEE
Q 006662 545 ADSIFSLYKDRCEMEDVLLE-MDRILRPEGSVIIR 578 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e-~dRiLrPgG~~i~~ 578 (636)
++..+ .+...+|.+ +.|+|||||.+++.
T Consensus 152 ~d~a~------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 152 VDIAQ------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp ECCCC------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecCCC------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 86432 455566654 56699999999986
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-06 Score=84.74 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=68.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCC--CCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY--PRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~y--p~t~Dl~H~ 545 (636)
..+|||+|||.|.++.+|++. + ..+|+.+|.++..+..+.++ |+ +.+.+ |..+..... +.+||+|-+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 468999999999999998765 1 13556667776788887776 54 23322 333322222 478999988
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+..++ ....+|-++-|+|||||.+++.+
T Consensus 133 ~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 66543 56889999999999999999974
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-05 Score=84.39 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=90.9
Q ss_pred ccCCCCCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhcc-ccccCCCCCccce
Q 006662 470 QLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNW-CEAMSTYPRTYDL 542 (636)
Q Consensus 470 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~-ce~~~~yp~t~Dl 542 (636)
.+.. ....+|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.-. ...+.++|..||+
T Consensus 197 ~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~ 271 (369)
T 3gwz_A 197 AYDF-SGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADV 271 (369)
T ss_dssp HSCC-TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSE
T ss_pred hCCC-ccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceE
Confidence 3444 55799999999999999999764 33 2334455 3666666543 442211111 1233567778999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------H------------HHHHHHHHHhcCCCce
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------D------------ILVKIKSITDGMEWEG 598 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~------------~~~~~~~~~~~~~W~~ 598 (636)
|.+.+++-.+.+. ....+|-++-|+|+|||+++|.|.. + ....++++++.-.++.
T Consensus 272 v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 9998888554321 2247999999999999999997521 1 1355667777777776
Q ss_pred EEeccCCCCCCcceEEEEEec
Q 006662 599 RIADHENGPRQREKILFANKK 619 (636)
Q Consensus 599 ~~~~~e~~~~~~~~~l~~~K~ 619 (636)
.-.... ......|+.++|.
T Consensus 351 ~~~~~~--~~~~~svie~~~a 369 (369)
T 3gwz_A 351 ERSLPC--GAGPVRIVEIRRA 369 (369)
T ss_dssp EEEEEC--SSSSEEEEEEEEC
T ss_pred EEEEEC--CCCCcEEEEEEeC
Confidence 644321 1134678888763
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-06 Score=86.37 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=64.5
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCC-Cccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++..|++. +. +|+.+|.++.++..+.+++- +-... |. +.+ +++ .+||+|.+.+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~-- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRL-PFSDTSMDAIIRIYA-- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSC-SBCTTCEEEEEEESC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhC-CCCCCceeEEEEeCC--
Confidence 3568999999999999999876 33 45666777789999988862 11111 11 122 233 79999998433
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+..|-|+.|+|||||.+++.+.
T Consensus 158 --------~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 158 --------PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp --------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred --------hhhHHHHHHhcCCCcEEEEEEc
Confidence 2358999999999999999754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.9e-07 Score=96.46 Aligned_cols=127 Identities=16% Similarity=0.142 Sum_probs=81.3
Q ss_pred HHHHHHhhhccCCCCCcceEeeeccc------chhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcccchhh-cccc
Q 006662 461 VTYYKSVDYQLAQPGRYRNLLDMNAY------LGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCE 531 (636)
Q Consensus 461 v~~y~~~~~~l~~~~~~r~vlD~~~g------~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce 531 (636)
...|.+++..+.. +..+|||+||| +||....|.+. += ..|+.+|.++.+.. .... |-++. |- +
T Consensus 203 ~~~Ye~lL~~l~~--~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~--a~V~GVDiSp~m~~--~~~r-I~fv~GDa-~ 274 (419)
T 3sso_A 203 TPHYDRHFRDYRN--QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR--GQIYGLDIMDKSHV--DELR-IRTIQGDQ-N 274 (419)
T ss_dssp HHHHHHHHGGGTT--SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT--CEEEEEESSCCGGG--CBTT-EEEEECCT-T
T ss_pred HHHHHHHHHhhcC--CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHhh--cCCC-cEEEEecc-c
Confidence 5568887766543 35799999999 78877777653 11 24455565545421 1111 22222 21 1
Q ss_pred ccCCC------CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------------HHHHHHH
Q 006662 532 AMSTY------PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------------VDILVKI 587 (636)
Q Consensus 532 ~~~~y------p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------------~~~~~~~ 587 (636)
.++.- +.+||+|.+++.. .-.+....|.|+-|+|||||++||.|- ..+++.+
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgsH----~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~l 350 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGSH----INAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLL 350 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSCC----CHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHH
T ss_pred ccchhhhhhcccCCccEEEECCcc----cchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHH
Confidence 11111 3789999987542 123567899999999999999999743 2368888
Q ss_pred HHHHhcCCCceE
Q 006662 588 KSITDGMEWEGR 599 (636)
Q Consensus 588 ~~~~~~~~W~~~ 599 (636)
++++..+.|.-.
T Consensus 351 k~l~D~l~~~~~ 362 (419)
T 3sso_A 351 KSLIDAIQHQEL 362 (419)
T ss_dssp HHHHHHHTGGGS
T ss_pred HHHHHHhccccc
Confidence 899888887653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=80.63 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYP 279 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf~ 279 (636)
...++.+.+.+...+ . +|||||||+|.++..|++++..++.+ |+++.+++.++++. .++.+..+|...++++
T Consensus 33 ~~i~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~~~V~av---Eid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAGAEVTAI---EKDLRLRPVLEETLSGLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTTCCEEEE---ESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcCCEEEEE---ECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence 345667777776544 3 79999999999999999997666666 77888888887663 3588999999888876
Q ss_pred CC-CeeEEEecccc
Q 006662 280 SR-AFDMAHCSRCL 292 (636)
Q Consensus 280 ~~-sFDlV~~s~~L 292 (636)
+. .||.|+++.-.
T Consensus 107 ~~~~~~~iv~NlPy 120 (271)
T 3fut_A 107 EVPQGSLLVANLPY 120 (271)
T ss_dssp GSCTTEEEEEEECS
T ss_pred hccCccEEEecCcc
Confidence 43 68999987644
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=79.61 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=76.0
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCcc----chHHHHhhcccchhh-ccccc--cCCCCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKIN----TLGVIYERGLIGTYQ-NWCEA--MSTYPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~----~l~~~~eRgli~~~~-~~ce~--~~~yp~t~Dl~H~~ 546 (636)
...+|||+|||.|.++.+|++. +- -.|+.+|.++. .+..+.++.-+-.++ |..+. +...+.+||+|.++
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~--~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPD--GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 3568999999999999999765 11 13344465533 344444432222222 33221 11124789999984
Q ss_pred cccccCCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCceEE-eccCCCCCCcceEE
Q 006662 547 SIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRI-ADHENGPRQREKIL 614 (636)
Q Consensus 547 ~~fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~-~~~e~~~~~~~~~l 614 (636)
.. ..+. ..++.++-|+|||||.+++.-... .+.+-.++++...|+... .+.+.-+ ...-++
T Consensus 155 ~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v 227 (233)
T 2ipx_A 155 VA------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVV 227 (233)
T ss_dssp CC------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEE
T ss_pred CC------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEE
Confidence 33 2222 355778999999999999964332 122223555666676653 3333222 234566
Q ss_pred EEEe
Q 006662 615 FANK 618 (636)
Q Consensus 615 ~~~K 618 (636)
+++|
T Consensus 228 ~~~~ 231 (233)
T 2ipx_A 228 VGVY 231 (233)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6665
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.3e-06 Score=81.04 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=72.6
Q ss_pred cceEeeecccchhhhhhhcCCC--eEEEEecCCCCCccchHHHHhhcccchhhcccccc-----CC-CC----Cccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM-----ST-YP----RTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~-----~~-yp----~t~Dl~H 544 (636)
..+|||+|||.|+++.+|+++. |+.+-+.|.... .++--+..|..+.- .. ++ .+||+|-
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~---------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI---------AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC---------TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC---------CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 6799999999999999999874 344444442110 12211111222100 00 11 4899999
Q ss_pred eccccccCCC--------CcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEec-cCCCCCCcceEE
Q 006662 545 ADSIFSLYKD--------RCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIAD-HENGPRQREKIL 614 (636)
Q Consensus 545 ~~~~fs~~~~--------~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~-~e~~~~~~~~~l 614 (636)
++.-...... ....+.+|.++-|+|||||.+++..- .+....+...++..==++.++. ..+-+...|..+
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEEECC------CCEEEE
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEEECCCCccCCCceEEE
Confidence 8764332111 11234788899999999999998631 1223344444444322233322 222334579999
Q ss_pred EEEec
Q 006662 615 FANKK 619 (636)
Q Consensus 615 ~~~K~ 619 (636)
||++.
T Consensus 177 v~~~~ 181 (191)
T 3dou_A 177 MFFGF 181 (191)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 99763
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=84.85 Aligned_cols=113 Identities=9% Similarity=-0.005 Sum_probs=77.2
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--C--------------------------------------CE
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--------------------------------------IL 242 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--------------------------------------v~ 242 (636)
.+...+..+....++. .|||.+||+|.++..++.. + ..
T Consensus 188 ~lAa~ll~l~~~~~~~--~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 188 TMAAALVLLTSWHPDR--PFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp HHHHHHHHHSCCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHhCCCCCC--eEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 3444555555544444 8999999999998887764 2 23
Q ss_pred EEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccccccccc---ChHHHHHHHHhcccC-
Q 006662 243 AVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ---YDGLYLIEVDRVLRP- 312 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKP- 312 (636)
++++ |+++.+++.|+++ ++ .+.+.+.|...++.+ .+||+|+++.-+..-.. +...+..++.++||+
T Consensus 266 V~Gv---Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 266 IIGG---DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp EEEE---ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 4555 8899999888754 44 378999999888765 48999999864421111 124466666667766
Q ss_pred -CcEEEEEeC
Q 006662 313 -GGYWILSGP 321 (636)
Q Consensus 313 -GG~Liis~p 321 (636)
||.+++.++
T Consensus 342 ~g~~~~iit~ 351 (393)
T 3k0b_A 342 PTWSVYVLTS 351 (393)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 888888765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9e-06 Score=85.60 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccc-cccCCCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~~~yp~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++.+|++. ++ .++..|. +.++..+.++ |+-+-+.-.+ ..+..+|..||+|.+..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV---SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC---EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcc
Confidence 44679999999999999998764 33 2333444 3677766653 4421111111 22345676799999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------H------------------HHHHHHHHHhcCCCceEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--------D------------------ILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------~------------------~~~~~~~~~~~~~W~~~~~ 601 (636)
++..+.+. +...+|-++-|+|+|||+++|.|.. . ....++++++.-.++....
T Consensus 258 vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (360)
T 1tw3_A 258 VLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 336 (360)
T ss_dssp CGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred cccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 87654321 2357999999999999999998644 0 1245566666667766533
Q ss_pred ccCCCC--CCcceEEEEEec
Q 006662 602 DHENGP--RQREKILFANKK 619 (636)
Q Consensus 602 ~~e~~~--~~~~~~l~~~K~ 619 (636)
..-.++ .-...++.++|+
T Consensus 337 ~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 337 RQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEECSSSSCEEEEEEEEEC
T ss_pred EeCCCCcccCccEEEEEEeC
Confidence 222111 011568888884
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.2e-05 Score=82.36 Aligned_cols=113 Identities=13% Similarity=0.041 Sum_probs=78.8
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--C--------------------------------------CE
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--------------------------------------IL 242 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--------------------------------------v~ 242 (636)
.+...+..+....++. .+||.+||+|.++...+.. + ..
T Consensus 181 ~LAaall~l~~~~~~~--~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDK--PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp HHHHHHHHHTTCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHhCCCCCC--eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 3444455555444444 8999999999999887754 2 23
Q ss_pred EEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEecccccccccC---hHHHHHHHHhcccC-
Q 006662 243 AVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRP- 312 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKP- 312 (636)
++++ |+++.+++.|+++ ++ .+.+.+.|...++.+ .+||+|+++.-+..-..+ ...++.++.+.||+
T Consensus 259 v~Gv---Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~ 334 (384)
T 3ldg_A 259 ISGF---DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL 334 (384)
T ss_dssp EEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred EEEE---ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence 4555 8899999888754 44 378999999888765 489999998644222222 25667777777776
Q ss_pred -CcEEEEEeC
Q 006662 313 -GGYWILSGP 321 (636)
Q Consensus 313 -GG~Liis~p 321 (636)
||.+++.++
T Consensus 335 ~g~~~~iit~ 344 (384)
T 3ldg_A 335 KTWSQFILTN 344 (384)
T ss_dssp TTSEEEEEES
T ss_pred CCcEEEEEEC
Confidence 998888865
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.97 E-value=7e-06 Score=86.19 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred HhhhccCCCCC-cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccc---hh-hccccccC
Q 006662 466 SVDYQLAQPGR-YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIG---TY-QNWCEAMS 534 (636)
Q Consensus 466 ~~~~~l~~~~~-~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~---~~-~~~ce~~~ 534 (636)
.++..+.. .. ..+|||+|||.|.++.+|++. ++ .++-.|.+ .++..+.++ |+-. .. +|..+.-.
T Consensus 169 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGV-FARARTVIDLAGGHGTYLAQVLRRHPQL---TGQIWDLP-TTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp HHHHTCGG-GTTCCEEEEETCTTCHHHHHHHHHCTTC---EEEEEECG-GGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred HHHHhCCC-cCCCCEEEEeCCCcCHHHHHHHHhCCCC---eEEEEECH-HHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 44444544 34 789999999999999999764 33 22333443 566665543 5422 11 12222111
Q ss_pred CCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H-----------------HHHHH
Q 006662 535 TYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D-----------------ILVKI 587 (636)
Q Consensus 535 ~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~-----------------~~~~~ 587 (636)
..|..||+|.+.+++..+.+ -+...+|-++-|+|||||.++|.|.. . ....+
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred cCCCCccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHH
Confidence 15678999999888875532 23578999999999999999997520 0 12345
Q ss_pred HHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 588 KSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 588 ~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
+++++.-.++..... .+...+++++|+
T Consensus 323 ~~ll~~aGf~~~~~~-----~g~~~l~~a~kp 349 (352)
T 3mcz_A 323 AGVVRDAGLAVGERS-----IGRYTLLIGQRS 349 (352)
T ss_dssp HHHHHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred HHHHHHCCCceeeec-----cCceEEEEEecC
Confidence 566666666655421 235788999986
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.3e-06 Score=87.49 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=83.3
Q ss_pred cceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCCCccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||.|.++.+|++.. - .+|+.+|.+..++..+.++ |+-..+ .+...+...+.+||+|-++..|..
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPK--IRLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTT--CBCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCccc
Confidence 3479999999999999987652 1 1456667766677776654 332111 122233323589999999888764
Q ss_pred CC--CCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 552 YK--DRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 552 ~~--~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
.. +.-..+.+|.++.|+|||||.+++.... ..-..++++.... +... .+ .+-+|+-++|.
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~~--~~~~--~~----~gf~v~~~~k~ 337 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFH--EVIA--QT----GRFKVYRAIMT 337 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSCC--EEEE--EC----SSEEEEEEEC-
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCce--EEEe--eC----CCEEEEEEEeC
Confidence 21 1224578999999999999999997543 2334455555432 2222 11 35677777663
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=92.93 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=72.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----------cc--cchhhccccccCCCCCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----------GL--IGTYQNWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----------gl--i~~~~~~ce~~~~yp~t~Dl~H 544 (636)
..+|||+|||.|.++.+|++..--...|+.+|.++.++..+.+| |+ +-.++.=.+.+...+.+||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 57899999999999999998741113677778888899988773 44 2233211122333348999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+..+|....+. ....++-|+-|+|||| .+||+.
T Consensus 802 ~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 802 CLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEe
Confidence 98888765432 2346889999999999 888864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=9.1e-06 Score=79.60 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=81.4
Q ss_pred cceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-----Cccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTYD 541 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-----~t~D 541 (636)
..+|||+|||.|.++.+|++. + - ..|+.+|.++.++..+.++ |+ +-+++ |..+.+...+ .+||
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPAD--GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 468999999999999999874 1 1 2445556665677777654 54 22222 2222222222 6899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHHHH----HHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKIKS----ITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~e~ 605 (636)
+|.++.. ......++-++-|+|||||.+++.+. ......+++ +...-+++..+...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 219 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL-- 219 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec--
Confidence 9988543 34567899999999999999999532 112233333 34455666666533
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
.+.+++++|.
T Consensus 220 ----~dGl~~~~k~ 229 (229)
T 2avd_A 220 ----GDGLTLAFKI 229 (229)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCceEEEEEC
Confidence 3578888873
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-06 Score=80.02 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred cceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|++. + - -.|+.+|.++.++..+.++ |+ +-+++ |..+.+...+. ||+|.++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISIS--SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 468999999999999999865 1 1 2445556666677776543 44 22222 33233334457 9999875
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
. .....+.++-++-|+|||||.+++.+
T Consensus 134 ~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 C------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 23467899999999999999999854
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.94 E-value=8e-06 Score=86.04 Aligned_cols=105 Identities=15% Similarity=0.244 Sum_probs=66.0
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchH--HHHhhcccchhhccc-cccCCCCCccce
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLG--VIYERGLIGTYQNWC-EAMSTYPRTYDL 542 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~--~~~eRgli~~~~~~c-e~~~~yp~t~Dl 542 (636)
+..+.. ....+|||+|||.|.++.+|++. ++ .++..|.+ ..+. .+.+.|+-+-+.--+ ..|...| +||+
T Consensus 177 ~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~ 250 (348)
T 3lst_A 177 ARAGDF-PATGTVADVGGGRGGFLLTVLREHPGL---QGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFLREVP-HADV 250 (348)
T ss_dssp HHHSCC-CSSEEEEEETCTTSHHHHHHHHHCTTE---EEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTTTCCC-CCSE
T ss_pred HHhCCc-cCCceEEEECCccCHHHHHHHHHCCCC---EEEEecCH-HHhhcccccccCCCCCeEEEecCCCCCCC-CCcE
Confidence 333444 56889999999999999999763 33 22333433 2222 001123322111111 2335678 9999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|.+..++-.+.+. +...+|-++-|+|||||.++|.|
T Consensus 251 v~~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 251 HVLKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EEEehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 9998877654321 23589999999999999999975
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=83.06 Aligned_cols=139 Identities=16% Similarity=0.063 Sum_probs=83.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh-----cc-----------cchhh-ccccccCCCCCc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER-----GL-----------IGTYQ-NWCEAMSTYPRT 539 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR-----gl-----------i~~~~-~~ce~~~~yp~t 539 (636)
.++|||+|||.|+++.+|++.+. .+|+-+|..+..+..+.++ |+ +-+++ |..+.... +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 47899999999999999988854 4566666666788777665 32 11111 11111122 678
Q ss_pred cceeeeccccccCCCCc-CHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcc
Q 006662 540 YDLIHADSIFSLYKDRC-EMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQRE 611 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c-~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~ 611 (636)
||+|-++.........- ....++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+..... ..+ .+..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g~~ 231 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-ASPW 231 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SSSE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CceE
Confidence 99999864422111111 12678999999999999999962 234444444444433233332211 111 2346
Q ss_pred eEEEEEec
Q 006662 612 KILFANKK 619 (636)
Q Consensus 612 ~~l~~~K~ 619 (636)
.+++|.|.
T Consensus 232 ~~~~as~~ 239 (281)
T 1mjf_A 232 AFLVGVKG 239 (281)
T ss_dssp EEEEEEES
T ss_pred EEEEeeCC
Confidence 78899886
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-06 Score=89.82 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=57.4
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHH-h-hcc--cchhhcccc-ccCCC-CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY-E-RGL--IGTYQNWCE-AMSTY-PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~-e-Rgl--i~~~~~~ce-~~~~y-p~t~Dl~H~~~~f 549 (636)
..+|||+|||.|+|..+|+++ .|..+-+.....+ .++..+. + .|. +-+.. . .+... +.+||+|.|+..|
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~-~~~~~~~~~~~~~~~v~~~~---~~D~~~l~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPIPMSTYGWNLVRLQS---GVDVFFIPPERCDTLLCDIGE 158 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCCCCCSTTGGGEEEEC---SCCTTTSCCCCCSEEEECCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCch-hHHHHHHhhhcCCCCeEEEe---ccccccCCcCCCCEEEECCcc
Confidence 579999999999999999887 3544433111111 1111110 1 111 11221 2 23333 4789999998877
Q ss_pred ccCCCCcC---HHHHHHHHhhcccCCcEEEEE
Q 006662 550 SLYKDRCE---MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 550 s~~~~~c~---~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+....--+ ...+|.++.|+|||||.|++.
T Consensus 159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 52111001 114788899999999999996
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.93 E-value=6e-06 Score=80.40 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=73.4
Q ss_pred CcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHH--------hhcc--cchhhccccccCCCC-Ccccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIY--------ERGL--IGTYQNWCEAMSTYP-RTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~--------eRgl--i~~~~~~ce~~~~yp-~t~Dl~ 543 (636)
...+|||+|||.|.++.+|++.. - -+|+.+|.++.++..+. .+|+ +-..+.=.+.++ ++ .+ |.+
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v 102 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPS--RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GEL 102 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTT--EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEE
Confidence 36789999999999999998761 1 35677777777887532 2444 222221112222 33 44 766
Q ss_pred eeccccccCC----CCcCHHHHHHHHhhcccCCcEEEEEeC------------------HH-HHHHHHHHHhcCCCceEE
Q 006662 544 HADSIFSLYK----DRCEMEDVLLEMDRILRPEGSVIIRDD------------------VD-ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 544 H~~~~fs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d~------------------~~-~~~~~~~~~~~~~W~~~~ 600 (636)
.. +|+... +.-+.+.+|-|+-|+|||||.+++... .. ..+.+.+++..-.|++.-
T Consensus 103 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 103 HV--LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EE--ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EE--EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 62 232100 011126899999999999999999621 12 233477778877887653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=84.30 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=68.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHc-------------------CCC-eEEEEeccccCC
Q 006662 220 RTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALER-------------------GVP-ALIGVMASIRLP 277 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~er-------------------g~~-~~~~~~d~~~Lp 277 (636)
.+|||+|||+|.++..++++ + ..++.+ |+++.+++.++++ +.. +.+...|...+.
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~av---Di~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLN---DISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEE---ESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 48999999999999999987 3 455555 8888888877643 443 667777765432
Q ss_pred C-CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 278 Y-PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 f-~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. ..+.||+|+..- . .....++..+.+.|||||+++++.
T Consensus 126 ~~~~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 135799999532 1 133688999999999999988875
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.6e-05 Score=81.37 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=71.9
Q ss_pred CcceEeeecccc---hhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc----ccchhh-ccccc-----c----CCCC
Q 006662 476 RYRNLLDMNAYL---GGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG----LIGTYQ-NWCEA-----M----STYP 537 (636)
Q Consensus 476 ~~r~vlD~~~g~---ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~-~~ce~-----~----~~yp 537 (636)
.++.|||+|||+ |.+...+... += ..|+.+|.++.++..+.++- -+..++ |..+. . ..+|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 478999999999 9887665432 21 25677788778888887762 122221 22110 0 1354
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 538 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 538 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+||+|-+.++|-...+. +...+|-|+-|+|||||+++|.+.
T Consensus 155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 589999888888776655 788999999999999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-05 Score=79.44 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=77.0
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhhcc---cchhh-ccccccCCC-----CCccce
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYDL 542 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~~~~y-----p~t~Dl 542 (636)
.++|||+|||.|.++.+|++. .|+.+-+.|.-.. ...+.+-+.|+ |-+++ |..+.+..+ +.+||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK-HAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCC-CSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 569999999999999998762 2444444443222 22233333465 22222 222222333 478999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHHH----HhcCCCceEEeccCCC
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------------DILVKIKSI----TDGMEWEGRIADHENG 606 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~~----~~~~~W~~~~~~~e~~ 606 (636)
|.+++. .-....+|-++-|+|||||.+++.|-. .....++++ ...=+++..+...
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 210 (242)
T 3r3h_A 140 IFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI--- 210 (242)
T ss_dssp EEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS---
T ss_pred EEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc---
Confidence 988653 223567889999999999999995321 122233333 3344565555422
Q ss_pred CCCcceEEEEEec
Q 006662 607 PRQREKILFANKK 619 (636)
Q Consensus 607 ~~~~~~~l~~~K~ 619 (636)
.+.+++++|+
T Consensus 211 ---~dG~~~~~k~ 220 (242)
T 3r3h_A 211 ---ADGMFLVQPI 220 (242)
T ss_dssp ---SSCEEEEEEC
T ss_pred ---cCceEEEEEc
Confidence 4678888873
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.1e-05 Score=79.72 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=74.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCC-C-Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY-P-RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~y-p-~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|++. ..+|+.+|.++..+..+.++ |+ +...+ |+.+ .. + ..||+|-+
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~- 164 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD---AEVPEGIFHAAFV- 164 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT---SCCCTTCBSEEEE-
T ss_pred CCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh---cccCCCcccEEEE-
Confidence 568999999999999999876 24667777777888888776 33 22222 2222 22 3 68999876
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcC
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGM 594 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~ 594 (636)
+--+...+|-++-|+|||||.+++... .+.+.++.+.++..
T Consensus 165 -------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 165 -------DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -------CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 223456889999999999999999876 45666666665554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.1e-05 Score=85.05 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=69.4
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccccccC--CCCCccce
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMS--TYPRTYDL 542 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~--~yp~t~Dl 542 (636)
+.. ....+|||+|||.|.++.+|++. ++ .++.+|. +.++..+.++ |+-+-+.-.+..+. ++|. +|+
T Consensus 186 ~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~ 259 (359)
T 1x19_A 186 AKL-DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADA 259 (359)
T ss_dssp CCC-TTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSE
T ss_pred cCC-CCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCE
Confidence 444 45789999999999999999764 22 3344455 4777777765 55321111112222 3443 499
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|.+..++..+.+ -....+|-++-|+|||||.++|.|
T Consensus 260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999888775543 135789999999999999999876
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-06 Score=84.63 Aligned_cols=131 Identities=11% Similarity=0.197 Sum_probs=87.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCcc---ceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTY---DLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~---Dl~H~ 545 (636)
..+|||+|||.|.++.+|++.+- .+|+.+|.++..+.++.++ |+ +-+++ ||.+. .+..| |+|-+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~Ivs 198 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILS 198 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEE
Confidence 34799999999999999987632 3566777777788887664 44 33333 44443 34689 99988
Q ss_pred cccccc----------CC------CCcCHHHHHHHHh-hcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCCCC
Q 006662 546 DSIFSL----------YK------DRCEMEDVLLEMD-RILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 608 (636)
Q Consensus 546 ~~~fs~----------~~------~~c~~~~~l~e~d-RiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 608 (636)
+--+.. +. ..++-..++.++- +.|+|||++++.-..+....+.++++.. ....|..
T Consensus 199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~---- 271 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSA---- 271 (284)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTT----
T ss_pred cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccC----
Confidence 622211 11 1122237889999 9999999999976666667777776665 3333333
Q ss_pred CcceEEEEEec
Q 006662 609 QREKILFANKK 619 (636)
Q Consensus 609 ~~~~~l~~~K~ 619 (636)
+.+++++++++
T Consensus 272 g~~R~~~~~~k 282 (284)
T 1nv8_A 272 GKYRFLLLNRR 282 (284)
T ss_dssp SSEEEEEEECC
T ss_pred CCceEEEEEEc
Confidence 56788888765
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=84.15 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=64.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-------C------------C--EEEEcCcCCchHH------HHHHHH-HcC--CCeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-------N------------I--LAVSFAPRDTHEA------QVQFAL-ERG--VPALI 268 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------~------------v--~vv~i~p~Dis~a------~l~~A~-erg--~~~~~ 268 (636)
..+|+|+||++|..+..+... . + ...|+...|.+.- ..+... +.+ .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999888877654 0 1 1123333444322 112121 222 22344
Q ss_pred EEecc---ccCCCCCCCeeEEEecccccccccChH---------------------------------------HHHHHH
Q 006662 269 GVMAS---IRLPYPSRAFDMAHCSRCLIPWGQYDG---------------------------------------LYLIEV 306 (636)
Q Consensus 269 ~~~d~---~~Lpf~~~sFDlV~~s~~L~h~~~d~~---------------------------------------~~L~el 306 (636)
..+.. ....||+++||+|+++.+| ||..+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 3346899999999999999 8864431 125666
Q ss_pred HhcccCCcEEEEEeC
Q 006662 307 DRVLRPGGYWILSGP 321 (636)
Q Consensus 307 ~RvLKPGG~Liis~p 321 (636)
.+.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 212 SEELISRGRMLLTFI 226 (384)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhccCCeEEEEEe
Confidence 899999999999865
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-05 Score=77.91 Aligned_cols=129 Identities=9% Similarity=0.077 Sum_probs=81.6
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----ccc----chhh-ccccccCCC-CCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTY-PRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gli----~~~~-~~ce~~~~y-p~t~Dl~ 543 (636)
..+|||+|||.|.++.+|++. +- .|+.+|.++.++..+.++ |+- -+.+ |..+.+..+ +.+||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 448999999999999988762 22 344556666677666543 432 2222 222333445 4899999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHHHHHHhcCCCc----eEEeccCCCC
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKIKSITDGMEWE----GRIADHENGP 607 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~~~~~~~~~W~----~~~~~~e~~~ 607 (636)
-++.. .-....++-++-|+|||||.+++.+- ......++++.+.++++ +.+. |
T Consensus 134 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-----p 202 (221)
T 3dr5_A 134 FGQVS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARL-----P 202 (221)
T ss_dssp EECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEE-----S
T ss_pred EEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEe-----e
Confidence 87542 23456789999999999999999421 11233455555555554 3332 2
Q ss_pred CCcceEEEEEecC
Q 006662 608 RQREKILFANKKY 620 (636)
Q Consensus 608 ~~~~~~l~~~K~~ 620 (636)
..+.+++++|.+
T Consensus 203 -~gdGl~~~~~~~ 214 (221)
T 3dr5_A 203 -LGAGLTVVTKAL 214 (221)
T ss_dssp -STTCEEEEEECC
T ss_pred -ccchHHHHHHHH
Confidence 357899999976
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-06 Score=85.40 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=55.9
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc--------cchhhccccccCCC-CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL--------IGTYQNWCEAMSTY-PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl--------i~~~~~~ce~~~~y-p~t~Dl~H~~ 546 (636)
..+|||+|||.|+|+.+|+++ .|+.+-+.|. +..+.++.+ +-.+.. +..+..+ +.+||+|-|+
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m------~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~Vvsd 155 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYTL------GTSGHEKPRLVETFGWNLITFKS-KVDVTKMEPFQADTVLCD 155 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEECC------CCTTSCCCCCCCCTTGGGEEEEC-SCCGGGCCCCCCSEEEEC
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECchh------hhhhhhchhhhhhcCCCeEEEec-cCcHhhCCCCCcCEEEEC
Confidence 678999999999999999876 4555555442 111111111 111100 1122224 4899999986
Q ss_pred cccccCCCCcCHH---HHHHHHhhcccCCc--EEEEE
Q 006662 547 SIFSLYKDRCEME---DVLLEMDRILRPEG--SVIIR 578 (636)
Q Consensus 547 ~~fs~~~~~c~~~---~~l~e~dRiLrPgG--~~i~~ 578 (636)
..+......-+.. .+|-++.|+||||| .|++.
T Consensus 156 ~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 156 IGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 5532111000001 37888999999999 99985
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.4e-07 Score=89.92 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=67.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||.|+++.+|++.+ ..|+.+|.++.++..+.++ |+ +-+++ |+.+ +. -+.+||+|.++..
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPP 153 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCC
T ss_pred CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCC
Confidence 5689999999999999999886 4677778877788877655 33 22222 2222 11 2379999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|...... ...+.|+.|+|+|||.+|+..
T Consensus 154 ~~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 7753322 236678999999999987764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.4e-05 Score=79.36 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=81.4
Q ss_pred cceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhh----ccc---chhh-ccccccCC-----------
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMST----------- 535 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gli---~~~~-~~ce~~~~----------- 535 (636)
..+|||+|||.|.++.+|++. + - -+|+.+|.++..+..+.++ |+- -+.+ |..+....
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPED--GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 468999999999999998764 1 1 2445556666677777665 542 2221 22121111
Q ss_pred --C--C-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHH----HHHHhcC
Q 006662 536 --Y--P-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKI----KSITDGM 594 (636)
Q Consensus 536 --y--p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~----~~~~~~~ 594 (636)
| + .+||+|.++.. .-..+.+|-++-|+|||||.+++.+- ......+ +.+.+.-
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDS 212 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCC
Confidence 2 2 68999987532 22456889999999999999999751 1122223 3344555
Q ss_pred CCceEEeccCCCCCCcceEEEEEecC
Q 006662 595 EWEGRIADHENGPRQREKILFANKKY 620 (636)
Q Consensus 595 ~W~~~~~~~e~~~~~~~~~l~~~K~~ 620 (636)
++.+...-. .+.+.+++|++
T Consensus 213 ~~~~~~~p~------~~g~~~~~~~~ 232 (239)
T 2hnk_A 213 LVDVSLVPI------ADGVSLVRKRL 232 (239)
T ss_dssp TEEEEEECS------TTCEEEEEECC
T ss_pred CeEEEEEEc------CCceEeeeehh
Confidence 666666533 25688888876
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.6e-05 Score=87.63 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----C----------------CEEEEcCcCCchHHHHHHHHH
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----N----------------ILAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~----------------v~vv~i~p~Dis~a~l~~A~e 261 (636)
...++.+.+++....+ .+|||.+||+|.|+..+++. . ..+.++ |+++.+++.|+.
T Consensus 155 ~~iv~~mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~Gi---Eid~~~~~lA~~ 229 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL---ELVPGTRRLALM 229 (541)
T ss_dssp HHHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEE---ESCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEE---cCCHHHHHHHHH
Confidence 3455666777654444 38999999999998887653 1 133444 778888888764
Q ss_pred c----CCC------eEEEEeccccCC-CCCCCeeEEEeccccccccc------------C-hHHHHHHHHhcccCCcEEE
Q 006662 262 R----GVP------ALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQ------------Y-DGLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 262 r----g~~------~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~h~~~------------d-~~~~L~el~RvLKPGG~Li 317 (636)
+ +.. ..+..+|....+ ...+.||+|+++.-+..... + ...++..+.+.|||||+++
T Consensus 230 nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 309 (541)
T 2ar0_A 230 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 309 (541)
T ss_dssp HHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence 3 433 566777765443 34578999999865532211 1 1478999999999999999
Q ss_pred EEeC
Q 006662 318 LSGP 321 (636)
Q Consensus 318 is~p 321 (636)
+..|
T Consensus 310 ~V~p 313 (541)
T 2ar0_A 310 VVVP 313 (541)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9976
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=79.67 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=80.3
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-----Cccce
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-----RTYDL 542 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-----~t~Dl 542 (636)
.++|||+|||.|.++.+|++. +- .-.|+.+|.++..+.++.++ |+ |-++. |..+.+..+| .+||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 458999999999999998874 10 01345556666677776654 44 22222 2222222232 68999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHHHHHH----HhcCCCceEEeccCCC
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------------VDILVKIKSI----TDGMEWEGRIADHENG 606 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~~~~~----~~~~~W~~~~~~~e~~ 606 (636)
|.+++. .-....++-++-|+|||||.+++.+- ......++++ ...-+++..+...
T Consensus 152 V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 222 (232)
T 3cbg_A 152 IFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL--- 222 (232)
T ss_dssp EEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS---
T ss_pred EEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc---
Confidence 987543 23457899999999999999999532 1122334443 3444566655432
Q ss_pred CCCcceEEEEEec
Q 006662 607 PRQREKILFANKK 619 (636)
Q Consensus 607 ~~~~~~~l~~~K~ 619 (636)
.+.+.+++|.
T Consensus 223 ---~dG~~~~~~~ 232 (232)
T 3cbg_A 223 ---GDGMTLALKK 232 (232)
T ss_dssp ---BTCEEEEEEC
T ss_pred ---CCeEEEEEeC
Confidence 3568888874
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=76.67 Aligned_cols=108 Identities=11% Similarity=-0.050 Sum_probs=72.3
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP 279 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~ 279 (636)
+..++...++. +|||+|||+|..+..+++. ...++.+ |+++.+++.++++ +. ++.+...|...++..
T Consensus 94 ~~~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~---D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 168 (309)
T 2b9e_A 94 PAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAF---DLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS 168 (309)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred HHHHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc
Confidence 33445555555 9999999999999999875 2456666 8888888877644 44 578888888776543
Q ss_pred C---CCeeEEEec------ccccc-----c----c-cCh-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 S---RAFDMAHCS------RCLIP-----W----G-QYD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~---~sFDlV~~s------~~L~h-----~----~-~d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
. ++||.|++. ..+.. | . .+. ..+|..+.++|+ ||++++++-
T Consensus 169 ~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 169 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 2 579999962 11111 1 1 111 246777888887 999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.3e-05 Score=79.10 Aligned_cols=143 Identities=11% Similarity=0.131 Sum_probs=86.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc----cchhh-ccccccCCCCCcccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~-~~ce~~~~yp~t~Dl~ 543 (636)
..++|||+|||.|+++.+++++ ++ ..|+-+|..+..+.++.+. ++ +.+++ |--+.+...+.+||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 3689999999999999999987 55 3444455555677777664 22 11222 1111122235889999
Q ss_pred eeccccccCCC-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccC--CCCCCcceEEE
Q 006662 544 HADSIFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKILF 615 (636)
Q Consensus 544 H~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l~ 615 (636)
-++........ .-....++-++-|+|+|||.+++.. ..+.+..+.+.+++.=-.+...... .-+.+...+++
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ 232 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence 98643322111 1112578999999999999999973 2344555555555553344433211 11123467889
Q ss_pred EEecC
Q 006662 616 ANKKY 620 (636)
Q Consensus 616 ~~K~~ 620 (636)
|.|++
T Consensus 233 ask~~ 237 (275)
T 1iy9_A 233 GSKKY 237 (275)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 99974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=83.97 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=64.0
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-----------------cchhh-ccccccCCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----------------IGTYQ-NWCEAMSTYP 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----------------i~~~~-~~ce~~~~yp 537 (636)
..+|||+|||.|.++.+|++. +- .-.|+.+|.++..+..+.++.- +-+++ |..+....++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 569999999999999998764 10 0134455666667777766421 22222 3333322455
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHh
Q 006662 538 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITD 592 (636)
Q Consensus 538 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~ 592 (636)
.+||+|.++. .....+|-++.|+|||||.+++... .+.+.++.+.++
T Consensus 185 ~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 233 (336)
T 2b25_A 185 SLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR 233 (336)
T ss_dssp ---EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 6899998732 2223478999999999999998754 333444334333
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=81.36 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=57.9
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE----EEEcCcCCchHHHHHHHHHc-CCCeEEEEeccccCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL----AVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLP 277 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~----vv~i~p~Dis~a~l~~A~er-g~~~~~~~~d~~~Lp 277 (636)
..++.+.+.+...++. +|||||||+|.++..|++++.. ++++ |+++.+++.++++ ..++.+..+|...++
T Consensus 29 ~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~av---Did~~~l~~a~~~~~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHAV---ELDRDLIGRLEQRFGELLELHAGDALTFD 103 (279)
T ss_dssp HHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEEE---ECCHHHHHHHHHHHGGGEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEEE---ECCHHHHHHHHHhcCCCcEEEECChhcCC
Confidence 4566777777666555 9999999999999999987554 6666 8899999988776 346888999998888
Q ss_pred CCC
Q 006662 278 YPS 280 (636)
Q Consensus 278 f~~ 280 (636)
+++
T Consensus 104 ~~~ 106 (279)
T 3uzu_A 104 FGS 106 (279)
T ss_dssp GGG
T ss_pred hhH
Confidence 653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-06 Score=82.31 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=60.4
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc----c-------cchhh-ccccccCCCCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG----L-------IGTYQ-NWCEAMSTYPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg----l-------i~~~~-~~ce~~~~yp~t~Dl~ 543 (636)
..+|||+|||.|.++..|++. +- ..+|+.+|.++..+..+.++. + +-+.+ |..+.+ .-+..||+|
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i 155 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDAI 155 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCcCEE
Confidence 568999999999999988764 10 014555566666777765542 1 22222 222111 113689999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+++..+. .++-++-|+|||||.+++...
T Consensus 156 ~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 156 HVGAAAP---------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EECSBBS---------SCCHHHHHTEEEEEEEEEEES
T ss_pred EECCchH---------HHHHHHHHhcCCCcEEEEEEe
Confidence 9866552 345688999999999999753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.5e-05 Score=81.16 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=84.3
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc------c----cchhh-ccccccCC-CCCccce
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTYQ-NWCEAMST-YPRTYDL 542 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----i~~~~-~~ce~~~~-yp~t~Dl 542 (636)
...+|||+|||.|+++..|++. ++ ..|+.+|.++..+.++.++- + +-++. |..+-... -+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3579999999999999999876 34 35555666666777776642 1 11221 22221112 2578999
Q ss_pred eeeccccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCce-EEecc--CCCCCCcceE
Q 006662 543 IHADSIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEG-RIADH--ENGPRQREKI 613 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~-~~~~~--e~~~~~~~~~ 613 (636)
|-++.........-. -..++-++-|+|||||.+++... ......+.+.++...+.. ..... ..-+.+.-..
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f 252 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT 252 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence 998644322111111 15789999999999999999632 234556666666554543 33221 1112244568
Q ss_pred EEEEec
Q 006662 614 LFANKK 619 (636)
Q Consensus 614 l~~~K~ 619 (636)
++|.|.
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 889886
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.5e-05 Score=80.84 Aligned_cols=142 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc----cchhh-ccccccCCCCCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~-~~ce~~~~yp~t~Dl~H 544 (636)
..+|||+|||.|+++.++++. ++ .+|+.+|.++..+.++.++ ++ +.+++ |..+.....+.+||+|-
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 479999999999999999987 44 3555666666777777664 22 11121 21111223358899998
Q ss_pred eccccc-cCC-CCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcceEEE
Q 006662 545 ADSIFS-LYK-DRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREKILF 615 (636)
Q Consensus 545 ~~~~fs-~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~~l~ 615 (636)
++.... ... ..-....++-++-|+|+|||.+++.- ..+.+..+.+.+++.--.+..... ..-|.+...+++
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence 753211 110 00012688999999999999999962 233334443333333233333221 111224567899
Q ss_pred EEecC
Q 006662 616 ANKKY 620 (636)
Q Consensus 616 ~~K~~ 620 (636)
|.|++
T Consensus 249 as~~~ 253 (296)
T 1inl_A 249 ASKGI 253 (296)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 99974
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=85.21 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=77.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc----cchhhccccccCCC----CCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL----IGTYQNWCEAMSTY----PRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl----i~~~~~~ce~~~~y----p~t~Dl~H 544 (636)
..+|||+|||+|+|+.++++.+. .|+.+|.++.++..+.+. |+ +-+++.=+..+... ..+||+|-
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 56899999999999999988765 677788887888877664 33 22222111111111 35899987
Q ss_pred eccc-cccCC------CCcCHHHHHHHHhhcccCCcEEEEEe------C-HHHHHHHHHHHhcCCCceE
Q 006662 545 ADSI-FSLYK------DRCEMEDVLLEMDRILRPEGSVIIRD------D-VDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 545 ~~~~-fs~~~------~~c~~~~~l~e~dRiLrPgG~~i~~d------~-~~~~~~~~~~~~~~~W~~~ 599 (636)
++-- |.... ..-+...++.++-|+|+|||++++.. . ......+++.++....++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 7433 22111 11135688999999999999988753 1 2244455556666666654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.8e-05 Score=75.42 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er-g~~~~~~~~d~~~Lpf~ 279 (636)
...++.+.+.+...++. +|||||||+|.++..|++++ ..++++ |+++.+++.++++ ..++.+..+|...++++
T Consensus 17 ~~i~~~iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~av---Eid~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYVI---ELDREMVENLKSIGDERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCCSEEEEE---CCCHHHHHHHTTSCCTTEEEECSCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCCCeEEEE---ECCHHHHHHHHhccCCCeEEEEcchhhCChh
Confidence 44667777777665555 89999999999999999995 677777 9999999999876 23578888999888876
Q ss_pred CC--CeeEEEecc
Q 006662 280 SR--AFDMAHCSR 290 (636)
Q Consensus 280 ~~--sFDlV~~s~ 290 (636)
+. .| .|+++.
T Consensus 92 ~~~~~~-~vv~Nl 103 (249)
T 3ftd_A 92 SLGKEL-KVVGNL 103 (249)
T ss_dssp GSCSSE-EEEEEC
T ss_pred HccCCc-EEEEEC
Confidence 42 33 555554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.2e-05 Score=81.15 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=86.2
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc----cchhh-ccccccCCCCCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~-~~ce~~~~yp~t~Dl~H 544 (636)
..+|||+|||.|+++.++++. +. .+|+.+|.++..+.++.++ |+ +-+++ |..+.....+.+||+|-
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 478999999999999999987 44 4556667666788887764 12 11121 22222222357899998
Q ss_pred eccccccCCCCcCH--HHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccC--CCCCCcceEEE
Q 006662 545 ADSIFSLYKDRCEM--EDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKILF 615 (636)
Q Consensus 545 ~~~~fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l~ 615 (636)
++.. ......-.+ ..++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+...... ..+.+.-.+++
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 8642 211111111 688999999999999999953 2344555555555554444433211 11112345788
Q ss_pred EEecCC
Q 006662 616 ANKKYW 621 (636)
Q Consensus 616 ~~K~~w 621 (636)
|.|.+.
T Consensus 274 as~~~~ 279 (321)
T 2pt6_A 274 CSKTDT 279 (321)
T ss_dssp EESSTT
T ss_pred eeCCCC
Confidence 998753
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.79 E-value=3.5e-05 Score=78.27 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=76.0
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~ 545 (636)
..+|||+|||.|.++.+|++. +- .+|+.+|.++..+..+.++ |+ +-.++ |..+. +| ..||+|-+
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~V~~ 187 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDALFL 187 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEEEEE
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccCEEEE
Confidence 568999999999999988765 11 2556667766788887766 44 22222 33332 55 68999877
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCce
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEG 598 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~ 598 (636)
+ --+...+|-++-|+|+|||.+++.+. .+.+.++.+.++...|..
T Consensus 188 ~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 188 D--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp C--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred C--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 2 22345789999999999999999876 446666766666666653
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=78.90 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=63.6
Q ss_pred cceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCC------CCcc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY------PRTY 540 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~y------p~t~ 540 (636)
.++|||+|||.|.++..|++. + - -.|+.+|.++.++.++.++ |+ |-+.+ |..+....+ +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 468999999999999888753 1 1 2445556665677776553 55 22222 222222222 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|-+++- .-....++-++-|+|||||.+++.+
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99987542 2346789999999999999999863
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.7e-05 Score=78.27 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=61.3
Q ss_pred CCcceEeeecccchhhhhhhcCC----C-eEEEEecCCCCCccchHHHH----hhcccc-hhhccccccCCC---CCccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIY----ERGLIG-TYQNWCEAMSTY---PRTYD 541 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~----eRgli~-~~~~~ce~~~~y---p~t~D 541 (636)
....+|||+|||.|.|..+|++. + |+...+ ++.++..+. +++.+- +..|-+. ...| +.++|
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~-----s~~~~~~l~~~a~~~~ni~~V~~d~~~-p~~~~~~~~~vD 149 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEF-----APRVMRDLLTVVRDRRNIFPILGDARF-PEKYRHLVEGVD 149 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEEC-----CHHHHHHHHHHSTTCTTEEEEESCTTC-GGGGTTTCCCEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeC-----CHHHHHHHHHhhHhhcCeeEEEEeccC-ccccccccceEE
Confidence 45789999999999999999863 2 555444 445665554 344333 3223332 2223 27788
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|.++ +. ..-+.+.+|.|+.|+|||||.++|.+
T Consensus 150 vVf~d--~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 150 GLYAD--VA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEC--CC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEe--cc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 87653 11 12245678999999999999999973
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.77 E-value=2.4e-05 Score=82.71 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=67.9
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc----cchhh-ccccccCCCC-Cccce
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYP-RTYDL 542 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~-~~ce~~~~yp-~t~Dl 542 (636)
..++|||+|||.|+++..|++. ++ .+|+.+|.++.++.++.++ |+ +-+++ |+.+.+..++ .+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3589999999999999999987 34 3556667766788887664 33 22222 3333223344 78999
Q ss_pred eeeccccccCCCCcC-HHHHHHHHhhcccCCcEEEEE
Q 006662 543 IHADSIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|-++..-......-. ...++-++-|+|+|||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998543111111111 368999999999999999996
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.3e-05 Score=77.92 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=68.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.++.+++.++. -.|+.+|.++.++..+.++ |+ +-+++ |..+.....+.+||+|-++..|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 35899999999999998766653 2677788887888887654 33 23333 3222222234789999887665
Q ss_pred ccCCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006662 550 SLYKDRCEMEDVLLEMD--RILRPEGSVIIRDDV 581 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 581 (636)
. .-..+.++-++. |+|+|||.+++....
T Consensus 133 ~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R----RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4 134567777775 479999999998654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.76 E-value=2e-05 Score=82.36 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=73.1
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp~t~Dl~H~~~ 547 (636)
...+|||+|||.|+++.+|++. +- -.|+.+|.++.++..+.++ |+ +-+++.=.+.+..++..||+|-++-
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 3568999999999999998753 11 1355667776777777665 55 2222211122333457899999854
Q ss_pred ccccCC---CCc---------C-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcCCCc
Q 006662 548 IFSLYK---DRC---------E-------MEDVLLEMDRILRPEGSVIIRD----DVDILVKIKSITDGMEWE 597 (636)
Q Consensus 548 ~fs~~~---~~c---------~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~~~W~ 597 (636)
-.|... ..- + ...+|-++-|+|||||.++++. ..+.-..|+.+++...++
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 433111 000 0 1478999999999999999952 122233455555555443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.2e-05 Score=77.84 Aligned_cols=95 Identities=15% Similarity=0.029 Sum_probs=63.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H~~~ 547 (636)
...+|||+|||.|.++..|++..----+|+.+|.++.++..+.++ |+ +-..+ ......+| ..||+|.+++
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV--GDGTLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE--SCGGGCCGGGCCEEEEEESS
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCCCCCeeEEEECC
Confidence 356999999999999999876420001445556666788777765 33 22221 11223343 6899999977
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
++.... -++-|+|||||.+++....
T Consensus 155 ~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 765332 3889999999999998544
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.75 E-value=3.4e-05 Score=80.80 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=78.4
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc----cchhh-ccccccCCCCCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~-~~ce~~~~yp~t~Dl~H 544 (636)
.++|||+|||.|+++..|++. ++ ..|+-+|..+..+.++.++ |+ +-+++ |..+.+..-+.+||+|-
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 579999999999999999887 34 3555566666788887765 32 11111 22111122357899998
Q ss_pred eccccccCCCCcCH-HHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccCCCCC---CcceEEE
Q 006662 545 ADSIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGPR---QREKILF 615 (636)
Q Consensus 545 ~~~~fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~---~~~~~l~ 615 (636)
++.........-.. ..++-++-|+|||||.+++.. ..+....+.+.++.+--.+..... .-|. +.-.+++
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~-~iP~~~~g~~g~~~ 265 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS-IVSTYPSGSMGYLI 265 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE-ECTTSGGGEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEE-EecCcCCCceEEEE
Confidence 85422111111112 678999999999999999963 223344444444433223332211 1111 1225888
Q ss_pred EEec
Q 006662 616 ANKK 619 (636)
Q Consensus 616 ~~K~ 619 (636)
|.|.
T Consensus 266 ask~ 269 (314)
T 2b2c_A 266 CAKN 269 (314)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8886
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=5.5e-05 Score=71.91 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=66.2
Q ss_pred cceEeeecccchhhhhhhcCC-CeE-------EEEecCCCCCccchHHHHhhcccchh--hccccc------cCCCC-Cc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLW-------VMNTVPVEAKINTLGVIYERGLIGTY--QNWCEA------MSTYP-RT 539 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~-------~mnv~~~~~~~~~l~~~~eRgli~~~--~~~ce~------~~~yp-~t 539 (636)
..+|||+|||.|.++.+|++. +-- ...|+.+|.++.. . .+ ++ -.+ .|..+. ...++ .+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-~--~~-~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-P--LE-GA-TFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-C--CT-TC-EEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-c--CC-CC-eEEEeccCCCHHHHHHHHHhcCCCC
Confidence 578999999999999998764 200 0123333333111 0 00 11 111 111110 01134 68
Q ss_pred cceeeeccccccCCCC--------cCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEEec-cCCCCCC
Q 006662 540 YDLIHADSIFSLYKDR--------CEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIAD-HENGPRQ 609 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~-~e~~~~~ 609 (636)
||+|-+++.+....+. .....+|-++-|+|||||.+++.+-. +....+.+.++..--++.... ....+..
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~~~ 177 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKES 177 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC------
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCccC
Confidence 9999987654321111 11147899999999999999998421 122333333333211222221 1112224
Q ss_pred cceEEEEEe
Q 006662 610 REKILFANK 618 (636)
Q Consensus 610 ~~~~l~~~K 618 (636)
.|..+++..
T Consensus 178 ~e~~~v~~g 186 (196)
T 2nyu_A 178 SEVYFLATQ 186 (196)
T ss_dssp --EEEEEEE
T ss_pred ceEEEEeee
Confidence 577777764
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.1e-05 Score=78.78 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=94.1
Q ss_pred HHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhhcccccc-CCCCC
Q 006662 464 YKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAM-STYPR 538 (636)
Q Consensus 464 y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~~~ce~~-~~yp~ 538 (636)
|......+.. ..+|||+|||+|.+|.++....=-+ .+..+|-++.++.++.++- +-.-+.- ++.. ...|.
T Consensus 40 Y~~~~~~l~~---~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~-~d~~~~~~~~ 114 (200)
T 3fzg_A 40 YTYVFGNIKH---VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF-LNKESDVYKG 114 (200)
T ss_dssp HHHHHHHSCC---CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE-ECCHHHHTTS
T ss_pred HHHHHhhcCC---CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE-ecccccCCCC
Confidence 4444444544 7799999999999999996652112 6677788888999888763 3211111 2222 23458
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------HHHHHHHHHHHhcCCCceEEeccCCCC
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-----------VDILVKIKSITDGMEWEGRIADHENGP 607 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------~~~~~~~~~~~~~~~W~~~~~~~e~~~ 607 (636)
+||+|-+..++-...++ +..+.++-+.|||||.||--+. ..+-...++.+..=.|.+...+..
T Consensus 115 ~~DvVLa~k~LHlL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~--- 188 (200)
T 3fzg_A 115 TYDVVFLLKMLPVLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG--- 188 (200)
T ss_dssp EEEEEEEETCHHHHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET---
T ss_pred CcChhhHhhHHHhhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC---
Confidence 89987775555433322 4566689999999999998762 126677788888888888766544
Q ss_pred CCcceEEEEEe
Q 006662 608 RQREKILFANK 618 (636)
Q Consensus 608 ~~~~~~l~~~K 618 (636)
.|-+-|.+|
T Consensus 189 --nEl~y~~~~ 197 (200)
T 3fzg_A 189 --NELVYITSG 197 (200)
T ss_dssp --TEEEEEECC
T ss_pred --ceEEEEEec
Confidence 466666655
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=9.4e-06 Score=84.55 Aligned_cols=95 Identities=16% Similarity=-0.005 Sum_probs=63.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
...+|||+|||.|.++..|++..--.-+|+.+|.++.++..+.++ |+ +-+.+ |..+ ..+-+..||+|.+++.
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSPYDVIFVTVG 153 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEECSB
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh-ccccCCCeEEEEEcCC
Confidence 356899999999999999876411001345556666788887766 55 22222 2211 1111378999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+.... -++.|+|||||.+++...
T Consensus 154 ~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 154 VDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp BSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred HHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 76432 478899999999999754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.6e-05 Score=83.02 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-----------------CCEEEEcCcCCchHHHHHHHHHc--
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----------------NILAVSFAPRDTHEAQVQFALER-- 262 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----------------~v~vv~i~p~Dis~a~l~~A~er-- 262 (636)
...++.+.+++.... .+|||.+||+|.+...+++. .. .+.+.|+++.+++.|+.+
T Consensus 231 ~~Vv~lmv~ll~p~~---~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~---~i~G~Eid~~~~~lA~~Nl~ 304 (544)
T 3khk_A 231 KSIVTLIVEMLEPYK---GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQI---SVYGQESNPTTWKLAAMNMV 304 (544)
T ss_dssp HHHHHHHHHHHCCCS---EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGE---EEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhc---eEEEEeCCHHHHHHHHHHHH
Confidence 456677777765332 28999999999998877542 22 344448899998888643
Q ss_pred --CCCeEE--EEeccccCC-CCCCCeeEEEecccccc--ccc-------------------------Ch-HHHHHHHHhc
Q 006662 263 --GVPALI--GVMASIRLP-YPSRAFDMAHCSRCLIP--WGQ-------------------------YD-GLYLIEVDRV 309 (636)
Q Consensus 263 --g~~~~~--~~~d~~~Lp-f~~~sFDlV~~s~~L~h--~~~-------------------------d~-~~~L~el~Rv 309 (636)
++...+ ..+|....+ ++...||+|+++.-+.. |.. +. -.++..+.+.
T Consensus 305 l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~ 384 (544)
T 3khk_A 305 IRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYH 384 (544)
T ss_dssp HTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHT
T ss_pred HhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHH
Confidence 443333 555655444 45678999999765532 210 00 2688999999
Q ss_pred ccCCcEEEEEeC
Q 006662 310 LRPGGYWILSGP 321 (636)
Q Consensus 310 LKPGG~Liis~p 321 (636)
|+|||++++..|
T Consensus 385 Lk~gGr~aiVlP 396 (544)
T 3khk_A 385 LAPTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEEEE
T ss_pred hccCceEEEEec
Confidence 999999999976
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=69.54 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=81.4
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhhccccccCCCCCccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++ |+ +.++ +..+..+|.+||+|-++..|.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---~~d~~~~~~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVF---IGDVSEFNSRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEE---ESCGGGCCCCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEE---ECchHHcCCCCCEEEEcCCCc
Confidence 356899999999999999987753 2566677776788777765 22 2222 233444678999999988776
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCceEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
..... ....++-++-|+| ||.+++. ........+.+++....|++..
T Consensus 124 ~~~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cccCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 55433 3356788889998 5555444 2666777788888887777654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=85.52 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=65.2
Q ss_pred CCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhh-----------ccc-chhhccccccCCCC----
Q 006662 475 GRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYER-----------GLI-GTYQNWCEAMSTYP---- 537 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eR-----------gli-~~~~~~ce~~~~yp---- 537 (636)
....+|||+|||+|.++..|+. .+. -.|+.+|.++.++.++.+. |+- +-+.-.+..+...|
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~ 249 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER 249 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence 3467899999999999987764 343 1356667776677766542 331 11111123343333
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 538 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 538 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
..||+|-++.++ + .-++...|.|+.|+|||||.||+.+.
T Consensus 250 ~~~aDVVf~Nn~~--F--~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 250 IANTSVIFVNNFA--F--GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHTCSEEEECCTT--C--CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cCCccEEEEcccc--c--CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 368888775542 1 13567888999999999999999854
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.3e-05 Score=85.12 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 552 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~ 552 (636)
....+|||+|||.|.++.+|+++ .+ .++..|. +.++..+.+..-+-... +..+.++|. ||+|.+..++..+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~v~~~~--~d~~~~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLI---KGINFDL-PQVIENAPPLSGIEHVG--GDMFASVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCCTTEEEEE--CCTTTCCCC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC---eEEEeCh-HHHHHhhhhcCCCEEEe--CCcccCCCC-CCEEEEecccccC
Confidence 44689999999999999999764 33 2333344 24554443321122111 122345666 9999998887655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+. ....+|-++-|+|||||.++|.|
T Consensus 281 ~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 432 23489999999999999999974
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.69 E-value=4.7e-05 Score=76.89 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=72.2
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh-----c-c---cchhh-ccccccCCC-CCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER-----G-L---IGTYQ-NWCEAMSTY-PRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR-----g-l---i~~~~-~~ce~~~~y-p~t~Dl~ 543 (636)
..+|||+|||.|.++.+|++. +- .+|+.+|.++..+..+.++ | + +-+.+ |..+. .+ +.+||+|
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~~~~D~v 175 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSVDRA 175 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCEEEE
T ss_pred CCEEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCCCceeEE
Confidence 568999999999999999864 21 2455667766788877765 4 2 22222 33322 24 3789998
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhc-CCCc
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDG-MEWE 597 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~-~~W~ 597 (636)
-++ --+...+|-++-|+|+|||.+++... .+.+.++.+.++. ..|.
T Consensus 176 ~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 176 VLD--------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 772 22445889999999999999999764 3445555444443 4443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.1e-05 Score=83.84 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=64.6
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc--------------------CCEEEEcCcCCchHHHHHHHH-HcCCCeEEEEec---c
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFAL-ERGVPALIGVMA---S 273 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--------------------~v~vv~i~p~Dis~a~l~~A~-erg~~~~~~~~d---~ 273 (636)
...+|+|+||++|..+..+... .+...|+...|.+.-...... ....+..+..+. .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3467999999999766655433 112334445555433222111 000022333332 3
Q ss_pred ccCCCCCCCeeEEEecccccccccCh---------------------------------HHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYD---------------------------------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~---------------------------------~~~L~el~RvLKPGG~Liis~ 320 (636)
....||+++||+|+++.+| ||..+. ..+|+...+.|+|||.+++..
T Consensus 131 y~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3456899999999999999 886442 134888899999999999985
Q ss_pred C
Q 006662 321 P 321 (636)
Q Consensus 321 p 321 (636)
.
T Consensus 210 ~ 210 (359)
T 1m6e_X 210 L 210 (359)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.9e-05 Score=77.37 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=58.3
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchH-------HHHHHHHHc----C--CCeEEEEeccc
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHE-------AQVQFALER----G--VPALIGVMASI 274 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~-------a~l~~A~er----g--~~~~~~~~d~~ 274 (636)
+.+.+...++. +|||+|||+|.++..+++.+..++++ |+++ .+++.|+++ + ..+.+..+|..
T Consensus 75 l~~a~~~~~~~--~VLDlgcG~G~~a~~lA~~g~~V~~v---D~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~ 149 (258)
T 2r6z_A 75 IAKAVNHTAHP--TVWDATAGLGRDSFVLASLGLTVTAF---EQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA 149 (258)
T ss_dssp HHHHTTGGGCC--CEEETTCTTCHHHHHHHHTTCCEEEE---ECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred HHHHhCcCCcC--eEEEeeCccCHHHHHHHHhCCEEEEE---ECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence 44444333333 89999999999999999987777777 8888 888877643 2 23788888876
Q ss_pred cC-C-CCC--CCeeEEEeccccc
Q 006662 275 RL-P-YPS--RAFDMAHCSRCLI 293 (636)
Q Consensus 275 ~L-p-f~~--~sFDlV~~s~~L~ 293 (636)
.+ + +++ ++||+|++...+.
T Consensus 150 ~~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 150 EQMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHHhhhccCCCccEEEECCCCC
Confidence 63 3 444 6899999976653
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.6e-05 Score=81.87 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 552 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~ 552 (636)
...+.|||+|||.|.++.+|++. .+ .++..|.+ .++..+.++.-+.... ...|.++|.. |+|.+..++-.+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~v~~~~--~d~~~~~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSI---NAINFDLP-HVIQDAPAFSGVEHLG--GDMFDGVPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECH-HHHTTCCCCTTEEEEE--CCTTTCCCCC-SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEehH-HHHHhhhhcCCCEEEe--cCCCCCCCCC-CEEEEechhhcC
Confidence 55789999999999999999763 33 22333432 4444443332122221 1234467755 999988877655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+. +...+|-++-|+|||||.++|.|
T Consensus 275 ~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 275 SDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 432 34589999999999999999975
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.2e-05 Score=79.72 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=61.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC-C-ccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-R-TYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp-~-t~Dl~H~~~ 547 (636)
...+|||+|||.|.+++.|++..- .+|+.+|.++..+..+.++ |+ +.+.. +.....+| . .||+|.++.
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL--GDGSKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--SCGGGCCGGGCCEEEEEECS
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE--CCcccCCCCCCCccEEEECC
Confidence 356899999999999999977520 2445556555677777664 33 22211 12234555 3 499999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+... .-++-|+|||||.+++.-.
T Consensus 167 ~~~~~---------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 167 GAPKI---------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred cHHHH---------HHHHHHhcCCCcEEEEEEe
Confidence 65432 2378899999999999754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=79.03 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=68.8
Q ss_pred cEEEEeCCCCcHHHHHHhhc--C-CEEEEcCcCCchHHHHHHHHHc----CCC---eEEEEeccccC-C-CCCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSR--N-ILAVSFAPRDTHEAQVQFALER----GVP---ALIGVMASIRL-P-YPSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~-v~vv~i~p~Dis~a~l~~A~er----g~~---~~~~~~d~~~L-p-f~~~sFDlV~ 287 (636)
.+|||++||+|.++..++.+ + ..++.+ |+++.+++.++++ +.. +.+..+|...+ . ...+.||+|+
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~av---Di~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYAN---DISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEE---CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 48999999999999999985 4 244555 8888888877644 443 67777776443 1 1245799999
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+.. + ..+..++..+.+.|+|||+++++.
T Consensus 131 lDP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 854 1 133578999999999999998875
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=75.48 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=82.7
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc------c----cchhh-ccccccCCCCCcccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTYQ-NWCEAMSTYPRTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----i~~~~-~~ce~~~~yp~t~Dl~ 543 (636)
..++|||+|||.|+++..+++. ++ .+|+-+|..+..+.++.++= + +-+++ |..+.....+.+||+|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 3579999999999999999877 34 45556666656777776641 1 11111 1111112236889999
Q ss_pred eeccccccCCCCcCH-HHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccCCCCC--CcceEEE
Q 006662 544 HADSIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGPR--QREKILF 615 (636)
Q Consensus 544 H~~~~fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~--~~~~~l~ 615 (636)
-++.........-.. ..++-++-|+|+|||.+++.. ..+.+..+.+.+++.--.+......--.. +.-.+++
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~ 235 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 235 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEE
Confidence 986432221111111 689999999999999999973 22344444444444433333322111111 2235778
Q ss_pred EEec
Q 006662 616 ANKK 619 (636)
Q Consensus 616 ~~K~ 619 (636)
|.|.
T Consensus 236 ~s~~ 239 (283)
T 2i7c_A 236 CSKT 239 (283)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8876
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.6e-05 Score=75.95 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=63.1
Q ss_pred cceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCC------CCcc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTY------PRTY 540 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~y------p~t~ 540 (636)
.++|||+|||.|..+.+|++. + - -.|+.+|.++..+.++.++ |+ |-+++ |..+.+..+ +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 568999999999999888753 1 1 2344556665677766543 55 22222 333322233 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|.+++- .-....++-++-|+|||||.+++.+
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99987532 1245788999999999999999864
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.9e-05 Score=81.71 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=76.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-c---chhh-ccccccCCC---CCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-I---GTYQ-NWCEAMSTY---PRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i---~~~~-~~ce~~~~y---p~t~Dl~H 544 (636)
..+|||+|||+|+|+.++++.+. -.|+.+|.++..+..+.+. |+ - -+++ |.-+..... ...||+|.
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999988752 3566667776677666553 43 2 1121 111111111 35899999
Q ss_pred ecccccc------CCCCcCHHHHHHHHhhcccCCcEEEEEeCH------HHHHHHHHHHhcCCCceE
Q 006662 545 ADSIFSL------YKDRCEMEDVLLEMDRILRPEGSVIIRDDV------DILVKIKSITDGMEWEGR 599 (636)
Q Consensus 545 ~~~~fs~------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~~~~~~~~~~~~W~~~ 599 (636)
++--+.. .........++.++-++|+|||.++++... +....+++.+.....+..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 8643211 112245678999999999999999997432 344555555555544444
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.8e-05 Score=87.53 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=65.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
...+|||+|||.|.++..|++.+. ..|+.+|.+. ++..+.++ |+ +-+++ |+-+ + .+|..||+|-++.
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~ 232 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEP 232 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCC
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeC
Confidence 357999999999999999987754 3556666664 66555443 55 33333 2222 1 3568899999977
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
++..... -.+...|.++.|+|+|||.+++
T Consensus 233 ~~~~~~~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 233 MGYMLFN-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CHHHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred chHhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence 6543322 2356677899999999999986
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.63 E-value=9.7e-05 Score=70.85 Aligned_cols=111 Identities=7% Similarity=-0.057 Sum_probs=71.5
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCCCccceeeeccccccCCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
...+|||+|||.|.++.+|++.+. ..|+.+|.++.++..+.++-- +-++ +..+..+|.+||+|-++..|....+
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~---~~d~~~~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFM---VADVSEISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEE---ECCGGGCCCCEEEEEECCCC-----
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEE---ECcHHHCCCCeeEEEECCCchhccC
Confidence 357899999999999999987753 346667777778888877631 1222 2233335789999999888876543
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME 595 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~ 595 (636)
. ....++-++-|+| |+ +++..+......+.+++....
T Consensus 126 ~-~~~~~l~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 126 H-SDRAFIDKAFETS--MW-IYSIGNAKARDFLRREFSARG 162 (200)
T ss_dssp ---CHHHHHHHHHHE--EE-EEEEEEGGGHHHHHHHHHHHE
T ss_pred c-hhHHHHHHHHHhc--Cc-EEEEEcCchHHHHHHHHHHCC
Confidence 2 2246788888888 55 444434445566666655544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.62 E-value=4.1e-05 Score=78.38 Aligned_cols=96 Identities=8% Similarity=0.121 Sum_probs=66.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCC-CccchHHHHhhc---------c-------cchh-hccccccCCC--
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEA-KINTLGVIYERG---------L-------IGTY-QNWCEAMSTY-- 536 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~-~~~~l~~~~eRg---------l-------i~~~-~~~ce~~~~y-- 536 (636)
..+|||+|||.|.++.+|++.+. ..|+.+|. ++.++..+.++- + +-+. .+|.+.....
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 46899999999999998887753 25666777 567777765542 1 2222 3576543322
Q ss_pred ---CCccceeeeccccccCCCCcCHHHHHHHHhhccc---C--CcEEEE
Q 006662 537 ---PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILR---P--EGSVII 577 (636)
Q Consensus 537 ---p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLr---P--gG~~i~ 577 (636)
+..||+|-+..++-. .-+.+.+|-++.|+|+ | ||.+++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HHSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred hccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 478999987454432 2346899999999999 9 997655
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0019 Score=68.90 Aligned_cols=119 Identities=12% Similarity=0.050 Sum_probs=78.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d 298 (636)
+.+|||+||.+|.|+..+++++..+++++...+++.. .....+.+...|......+.+.||+|+|-.+ .+
T Consensus 212 G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-----~~ 281 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL-----MDTGQVTWLREDGFKFRPTRSNISWMVCDMV-----EK 281 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH-----HTTTCEEEECSCTTTCCCCSSCEEEEEECCS-----SC
T ss_pred CCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh-----ccCCCeEEEeCccccccCCCCCcCEEEEcCC-----CC
Confidence 3499999999999999999998888888655444322 2234678888888887777788999999543 35
Q ss_pred hHHHHHHHHhcccCC---cEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceE
Q 006662 299 DGLYLIEVDRVLRPG---GYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 299 ~~~~L~el~RvLKPG---G~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk 356 (636)
+...+.-+.++|..| +.++..-.+.. ...+.+......+.+.+...++.
T Consensus 282 p~~~~~l~~~wl~~~~~~~aI~~lKL~mk---------~~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 282 PAKVAALMAQWLVNGWCRETIFNLKLPMK---------KRYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEEECCSS---------SHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHhHHHHHHHHhccccceEEEEEEeccc---------chHHHHHHHHHHHHHHHHhcCcc
Confidence 566666666666655 44433322211 22334444455566666655553
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.60 E-value=3.4e-05 Score=78.73 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=72.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||+|+|+..|++. + ...|+.+|.++..+..+.+. |+ +-+++.=.+.+ ..+.+||+|-++...
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS
T ss_pred CCEEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc
Confidence 578999999999999998875 2 12345556655666666542 33 12222111222 225689999875443
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH------HHH-HHHHHHHhcCCCceE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV------DIL-VKIKSITDGMEWEGR 599 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~-~~~~~~~~~~~W~~~ 599 (636)
....++.++-|+|+|||.+++++.. +.. +.++.+.+.+.+++.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 5567899999999999999998542 233 334455555555554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0003 Score=79.00 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhccC--CCCCcEEEEeCCCCcHHHHHHhhc-----CCEEEEcCcCCchHHHHHHHHHc----CC---CeE
Q 006662 202 DAYIDDIGKLINLK--DGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----GV---PAL 267 (636)
Q Consensus 202 ~~~id~L~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~-----~v~vv~i~p~Dis~a~l~~A~er----g~---~~~ 267 (636)
...++.+.+++... +....+|||.+||+|.+...+++. ...+.++ |+++.+.+.|+.+ +. ...
T Consensus 203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~---Eid~~~~~lA~~Nl~l~gi~~~~~~ 279 (542)
T 3lkd_A 203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ---ELNTSTYNLARMNMILHGVPIENQF 279 (542)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE---ESCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE---ECcHHHHHHHHHHHHHcCCCcCccc
Confidence 44566777776522 223459999999999998888765 3444444 8888888877643 44 356
Q ss_pred EEEeccccC--C-CCCCCeeEEEeccccc-cccc--------------------C-hHHHHHHHHhccc-CCcEEEEEeC
Q 006662 268 IGVMASIRL--P-YPSRAFDMAHCSRCLI-PWGQ--------------------Y-DGLYLIEVDRVLR-PGGYWILSGP 321 (636)
Q Consensus 268 ~~~~d~~~L--p-f~~~sFDlV~~s~~L~-h~~~--------------------d-~~~~L~el~RvLK-PGG~Liis~p 321 (636)
+..+|.... | .....||+|+++.-+. .|.. + .-.++..+.+.|+ |||++.+..|
T Consensus 280 I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 280 LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred eEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 778887666 3 4567899999974331 1100 0 1248899999999 9999999877
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=6.6e-05 Score=78.23 Aligned_cols=82 Identities=9% Similarity=0.075 Sum_probs=58.1
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLP 277 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lp 277 (636)
+.+.+.+.+...++. +|||+|||+|.++..++++ +..++++ |.++.+++.|+++. ..+.+..++...++
T Consensus 14 Ll~e~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~Vigv---D~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 14 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGI---DVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 344555666555555 9999999999999999987 4677777 99999999998653 35667777766554
Q ss_pred --CC---CCCeeEEEecc
Q 006662 278 --YP---SRAFDMAHCSR 290 (636)
Q Consensus 278 --f~---~~sFDlV~~s~ 290 (636)
+. .++||.|++..
T Consensus 89 ~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHHHTTCSCEEEEEEEC
T ss_pred HHHHhcCCCCCCEEEEcC
Confidence 11 14677776543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.9e-05 Score=83.25 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=64.2
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
...+|||+|||.|.++.+|++. ++ .++..|. +.++..+.+..-+.... ...+.++|. ||+|.+..++..+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~v~~~~--~d~~~~~p~-~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKL---KCIVFDR-PQVVENLSGSNNLTYVG--GDMFTSIPN-ADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCBTTEEEEE--CCTTTCCCC-CSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCC---eEEEeeC-HHHHhhcccCCCcEEEe--ccccCCCCC-ccEEEeehhhccCC
Confidence 3679999999999999999864 22 2334444 34555443321122111 122345665 99999988887664
Q ss_pred CCcCHHHHHHHHhhcccC---CcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRP---EGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrP---gG~~i~~d 579 (636)
+. ....+|-++-|+||| ||+++|.|
T Consensus 261 d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 261 DK-DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp HH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 32 234899999999999 99999975
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.59 E-value=3.5e-05 Score=84.22 Aligned_cols=100 Identities=7% Similarity=0.096 Sum_probs=63.9
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHH-------Hh----hcc-cchhhcc-ccccCC---C-
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI-------YE----RGL-IGTYQNW-CEAMST---Y- 536 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~-------~e----Rgl-i~~~~~~-ce~~~~---y- 536 (636)
....+|||+|||+|.+++.|++. +. ..|+.+|.+..++..+ .+ .|+ ++-+.-. +..+.. +
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 34678999999999999999874 32 1345555555555555 33 253 1211111 123321 2
Q ss_pred --CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 537 --PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 537 --p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+..||+|-++..+ + .-+++..|.|+-|+|||||.+++.+.
T Consensus 319 ~~~~~FDvIvvn~~l--~--~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL--F--DEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp HHGGGCSEEEECCTT--C--CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccCCCCEEEEeCcc--c--cccHHHHHHHHHHhCCCCeEEEEeec
Confidence 3689999875433 1 13567888999999999999999863
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=6e-05 Score=80.92 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=63.5
Q ss_pred cceEeeecccchhhhhhhcC---CCeEEEEecCCCCCccchHHHHhhcc---cchhhccccccCCCCCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
..+|||+|||+|.++-..++ +.|+.+-..+. -.....++.+.|+ |-+++.--+.+ ..|..+|+|=+.-+-+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~--~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAI--WQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHH--HHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEEeecccc
Confidence 45799999999987654443 34655544331 1123445556677 44444222222 3578899987644434
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..-....++.++...||+|+|||.+|-+
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccchhhhHHHHHHhhCCCCceECCc
Confidence 4444457899999999999999998864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.7e-05 Score=77.22 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc----cchhh-ccccccCCCCCcccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYPRTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~-~~ce~~~~yp~t~Dl~ 543 (636)
..++|||+|||.|+++..|++. ++ .+|+-+|..+.++.++.++ |+ +-+++ |-.+.+...+.+||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3579999999999999999987 34 3455556665677777654 22 11221 1111122235889999
Q ss_pred eeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEec--cCCCCCCcceEEE
Q 006662 544 HADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIAD--HENGPRQREKILF 615 (636)
Q Consensus 544 H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~--~e~~~~~~~~~l~ 615 (636)
-++......... -....++-++-|+|||||.+++.. ..+....+.+..+.+-=.+...- .-.-+.+...+++
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~ 252 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFML 252 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEE
Confidence 985432211100 012468999999999999999964 12344444444333322232211 0111112346888
Q ss_pred EEec
Q 006662 616 ANKK 619 (636)
Q Consensus 616 ~~K~ 619 (636)
|.|.
T Consensus 253 as~~ 256 (304)
T 2o07_A 253 CSKN 256 (304)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8886
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=77.38 Aligned_cols=140 Identities=19% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
.....|||+|||.|+++..++...-=...|+.+|.++.++..+.++ |+ |-+.+.=.+.+......||+|-++--
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP 281 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP 281 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence 4467999999999999877765210001345556666777777654 43 22222111222222367899999766
Q ss_pred cccCC-CCcC----HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEe-ccCCCCCCcceEEEEEe
Q 006662 549 FSLYK-DRCE----MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIA-DHENGPRQREKILFANK 618 (636)
Q Consensus 549 fs~~~-~~c~----~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~~~~l~~~K 618 (636)
|..-. ..-. ...++-++-|+|||||.+++...... -++++.+ ..|+.... ...+|.+. -.|++++|
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~l~-~~i~vl~r 353 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGGVY-PRVFVLEK 353 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTTBC-CEEEEEEE
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCCEE-EEEEEEEc
Confidence 54211 1111 25788999999999999998654432 2445555 66765422 22344433 45666665
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.54 E-value=7.1e-05 Score=75.89 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=60.4
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE--EEEcCcCCchHHHHHHHHHcCC---CeEEEEeccccCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLP 277 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~--vv~i~p~Dis~a~l~~A~erg~---~~~~~~~d~~~Lp 277 (636)
..++.+.+.+...++. +|||||||+|.++. +.. +.. ++.+ |+++.+++.++++.. ++.+..+|...++
T Consensus 8 ~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~-l~~-~~~~~v~av---Eid~~~~~~a~~~~~~~~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQ--AMVEIGPGLAALTE-PVG-ERLDQLTVI---ELDRDLAARLQTHPFLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCCCTTC--CEEEECCTTTTTHH-HHH-TTCSCEEEE---CCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCCCCcC--EEEEECCCCcHHHH-hhh-CCCCeEEEE---ECCHHHHHHHHHHhccCCceEEEECchhhCC
Confidence 3556677777665555 89999999999999 654 444 5666 889999999987642 5788888988877
Q ss_pred CCC-----CCeeEEEecccc
Q 006662 278 YPS-----RAFDMAHCSRCL 292 (636)
Q Consensus 278 f~~-----~sFDlV~~s~~L 292 (636)
+++ +..|.|+++...
T Consensus 81 ~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHHTSCEEEEEECCT
T ss_pred HHHhhcccCCceEEEECCCC
Confidence 643 234677776543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.9e-05 Score=75.05 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=61.2
Q ss_pred cceEeeecccchhhhhhhcCCCe----EEEEecCCCCCccchHHHHhh----cc-------cchhhccccccCCC-----
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPL----WVMNTVPVEAKINTLGVIYER----GL-------IGTYQNWCEAMSTY----- 536 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v----~~mnv~~~~~~~~~l~~~~eR----gl-------i~~~~~~ce~~~~y----- 536 (636)
..+|||+|||.|.+++.|++..- =..+|+.+|.++..+..+.++ |+ +-+.+ .......
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~ 158 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH--KNIYQVNEEEKK 158 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE--CCGGGCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE--CChHhcccccCc
Confidence 56999999999999999876410 001445556666677777665 31 22221 1122222
Q ss_pred -CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 537 -PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 537 -p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+..||+|+++..+. .++-++-++|+|||.+++.-.
T Consensus 159 ~~~~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASAS---------ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBS---------SCCHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchH---------HHHHHHHHhcCCCcEEEEEEc
Confidence 27899999876654 245788999999999999743
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.53 E-value=5.8e-05 Score=76.96 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=65.2
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHH-------HHHHc----C---CCeEEEEec
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQ-------FALER----G---VPALIGVMA 272 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~-------~A~er----g---~~~~~~~~d 272 (636)
.+.+.+...++...+|||+|||+|..+..++.++..++.+ |.++.+.+ .+.++ + ..+.+..+|
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~v---E~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML---ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEE---ECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 3455555555522489999999999999999987777777 77775433 22211 1 236788777
Q ss_pred ccc-CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCc
Q 006662 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGG 314 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG 314 (636)
... ++.....||+|++...+ +.. ....++++..++||+.+
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y-~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMF-PHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCC-CCC-CC-----HHHHHHHHHS
T ss_pred HHHHHHhCcccCCEEEEcCCC-CCc-ccchHHHHHHHHHHHhh
Confidence 655 34323479999998766 333 22456777788888765
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.5e-05 Score=77.90 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=83.3
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------c-c----cchhh-ccccccCCCCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------G-L----IGTYQ-NWCEAMSTYPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------g-l----i~~~~-~~ce~~~~yp~t~Dl~ 543 (636)
.++|||+|||.|+++.+|++. ++ .+|+-+|..+..+.++.++ | + +-+++ |..+.....+.+||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 579999999999999999887 34 3555566665677777653 1 1 11111 1111111235889999
Q ss_pred eecccccc---CC-CCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcc
Q 006662 544 HADSIFSL---YK-DRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIADH--ENGPRQRE 611 (636)
Q Consensus 544 H~~~~fs~---~~-~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~ 611 (636)
-++..... .. ..-....++-++-|+|+|||.+++.- ..+....+.+.++..--.+..... ... .+..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~-~g~~ 234 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGF-FLNF 234 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGG-TEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CCeE
Confidence 98644322 10 00013688999999999999999862 223455555555555333332211 001 1235
Q ss_pred eEEEEEecC
Q 006662 612 KILFANKKY 620 (636)
Q Consensus 612 ~~l~~~K~~ 620 (636)
.+++|.|.+
T Consensus 235 ~~~~as~~~ 243 (314)
T 1uir_A 235 GFLLASDAF 243 (314)
T ss_dssp EEEEEESSS
T ss_pred EEEEEECCC
Confidence 678898874
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.5e-05 Score=79.88 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=64.1
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 552 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~ 552 (636)
....+|||+|||.|.++.+|++. ++- ++-.|.+ .++..+.++.-+.... ...|.++|.. |+|.+..++-.+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~-~~~~~a~~~~~v~~~~--~D~~~~~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIK---GVNFDLP-HVISEAPQFPGVTHVG--GDMFKEVPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECH-HHHTTCCCCTTEEEEE--CCTTTCCCCC-SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCe---EEEecCH-HHHHhhhhcCCeEEEe--CCcCCCCCCC-CEEEehHHhccC
Confidence 45789999999999999999763 332 2223332 3444433332122221 1234467755 999988777655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+. +...+|-++-|+|||||+++|.|
T Consensus 273 ~d~-~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 273 SDQ-HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 432 44689999999999999999975
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.2e-05 Score=81.15 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=78.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCC---CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY---PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~y---p~t~Dl~H~~ 546 (636)
..+|||+|||+|+|+.+|++. ..+|+.+|.++..+..+.+. |+ +-+++ |.-+.+... +.+||+|.++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 568999999999999999876 46778888877787777664 44 22222 111111111 4689999886
Q ss_pred ccc-ccCCCC-----cCHHHHHHHHhhcccCCcEEEEEeCH------HHHHHHHHHHhcCCCceEEe
Q 006662 547 SIF-SLYKDR-----CEMEDVLLEMDRILRPEGSVIIRDDV------DILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 547 ~~f-s~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~~~~~~~~~~~~W~~~~~ 601 (636)
--. ...+.. -....++.++-|+|+|||.+++.... .....+++.+.....+..+.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 432 211111 22357899999999999999997432 24455666666666555543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4e-05 Score=78.76 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchh----hhhhhcCC-CeE--EEEecCCCCCccchHHHHhhc-
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG----FAAALVDD-PLW--VMNTVPVEAKINTLGVIYERG- 521 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~gg----faa~l~~~-~v~--~mnv~~~~~~~~~l~~~~eRg- 521 (636)
|-.|...|..-.+. +++. . +.-+|+|+|||+|- .|..|.+. +-. -..|+.+|.++.+|..+.+.-
T Consensus 86 FfRd~~~f~~l~~~---llp~--~--~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y 158 (274)
T 1af7_A 86 FFREAHHFPILAEH---ARRR--H--GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIY 158 (274)
T ss_dssp TTTTTTHHHHHHHH---HHHS--C--SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEE
T ss_pred ccCChHHHHHHHHH---ccCC--C--CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCC
Confidence 55566666543322 2332 1 23579999999997 55555543 200 027889999989999887531
Q ss_pred -------c-----------------------------cc-hhhccccccCCCC--CccceeeeccccccCCCCcCHHHHH
Q 006662 522 -------L-----------------------------IG-TYQNWCEAMSTYP--RTYDLIHADSIFSLYKDRCEMEDVL 562 (636)
Q Consensus 522 -------l-----------------------------i~-~~~~~ce~~~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l 562 (636)
+ |- ..||+.+ .+|| ..||+|-|..|+-... .-....++
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~-~~~~~~vl 235 (274)
T 1af7_A 159 RLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFD-KTTQEDIL 235 (274)
T ss_dssp EGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSC-HHHHHHHH
T ss_pred chhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCC-HHHHHHHH
Confidence 0 00 1234444 2344 7899999988875442 23457899
Q ss_pred HHHhhcccCCcEEEEEe
Q 006662 563 LEMDRILRPEGSVIIRD 579 (636)
Q Consensus 563 ~e~dRiLrPgG~~i~~d 579 (636)
-++-+.|+|||++++..
T Consensus 236 ~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 236 RRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp HHHGGGEEEEEEEEECT
T ss_pred HHHHHHhCCCcEEEEEe
Confidence 99999999999999954
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=76.40 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=81.2
Q ss_pred cceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhhc-c-----cchhh-ccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERG-L-----IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRg-l-----i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||.|+++.+|++ .+-. .|+-+|..+.++.++.++= + +-+++ |-.+-...++ .+||+|-++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 34999999999999999987 4321 3344455556888777651 1 11222 2222223454 8999998864
Q ss_pred ccccCCC-CcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHHHH-HHhcCCCceEEe-ccC--CCCCCcceEEEEEe
Q 006662 548 IFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRDD--V--DILVKIKS-ITDGMEWEGRIA-DHE--NGPRQREKILFANK 618 (636)
Q Consensus 548 ~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~~~-~~~~~~W~~~~~-~~e--~~~~~~~~~l~~~K 618 (636)
....+.. .-.-..++-++-|+|||||.+++.-. . ..+..+.+ +.+.+. .+.++ +.. .|......|++|.|
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl~As~ 246 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIILMGSD 246 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEEEEES
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEEEEEC
Confidence 3222211 11126899999999999999998521 1 22222222 223332 23332 211 22223467899988
Q ss_pred cCC
Q 006662 619 KYW 621 (636)
Q Consensus 619 ~~w 621 (636)
.-.
T Consensus 247 ~pl 249 (317)
T 3gjy_A 247 TEF 249 (317)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.47 E-value=3.9e-05 Score=75.34 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=60.2
Q ss_pred cceEeeecccchhhhhhhcCC-Ce----EEEEecCCCCCccchHHHHhhc---------c--cchhhccccccCCCC--C
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PL----WVMNTVPVEAKINTLGVIYERG---------L--IGTYQNWCEAMSTYP--R 538 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v----~~mnv~~~~~~~~~l~~~~eRg---------l--i~~~~~~ce~~~~yp--~ 538 (636)
..+|||+|||.|.+++.|++. +. ..-.|+.+|.++..+..+.++. . +-+.+ ......+| .
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~ 162 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE--GDGRKGYPPNA 162 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE--SCGGGCCGGGC
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE--CCcccCCCcCC
Confidence 568999999999999998763 10 0013445565556777766542 1 22222 11222344 6
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.||+|+++..+. .++-++-|+|||||.+++.-.
T Consensus 163 ~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 163 PYNAIHVGAAAP---------DTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp SEEEEEECSCBS---------SCCHHHHHTEEEEEEEEEEES
T ss_pred CccEEEECCchH---------HHHHHHHHHhcCCCEEEEEEe
Confidence 899999866553 234788999999999999753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.9e-05 Score=76.47 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHH---cCCCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~e---rg~~~~~~~~d~~~Lp 277 (636)
...+.+|.+...+.++. +|||+|||.|.|+.+++++ ++. .+.+.|+...+...+.. .+.++.....+.....
T Consensus 76 AfKL~ei~eK~~Lk~~~--~VLDLGaAPGGWsQvAa~~~gv~--sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~ 151 (282)
T 3gcz_A 76 SAKLRWMEERGYVKPTG--IVVDLGCGRGGWSYYAASLKNVK--KVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN 151 (282)
T ss_dssp HHHHHHHHHTTSCCCCE--EEEEETCTTCHHHHHHHTSTTEE--EEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCC--eeeeEEeccCccccccccccCCCceEEeeCCcchhh
Confidence 33334444444455544 8999999999999998865 322 11122333221111100 1112222222222234
Q ss_pred CCCCCeeEEEecccccccccCh-------HHHHHHHHhcccCC--cEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPG--GYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPG--G~Liis~p 321 (636)
++.+.+|+|+|-.+.. .... -.+|.-+.++|+|| |.|++-..
T Consensus 152 l~~~~~DvVLSDmApn--sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 152 MEVIPGDTLLCDIGES--SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp SCCCCCSEEEECCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred cCCCCcCEEEecCccC--CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 5678899999976653 2221 13566678999999 99999865
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00048 Score=70.12 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=77.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh------cc----cchhhccccccCCCCCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER------GL----IGTYQNWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~~~ce~~~~yp~t~Dl~H~ 545 (636)
..++|||+|||.|+++.++++.+ ..|+-+|..+.++.++.++ ++ +.+. ++.-..|+.+||+|-+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~---~~D~~~~~~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHA---KQLLDLDIKKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEE---SSGGGSCCCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEE---echHHHHHhhCCEEEE
Confidence 35799999999999999998874 3555556655676666543 11 1111 1111223388999887
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccCCCCC-CcceEEEEEec
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGPR-QREKILFANKK 619 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~~~~l~~~K~ 619 (636)
+. -+....+-++-|+|+|||.+++.. ..+.+..+.+.++..--.+.. ....-|. +...+++|.|.
T Consensus 146 d~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~-~~~~vP~~g~~~~~~as~~ 216 (262)
T 2cmg_A 146 LQ--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP-FVAPLRILSNKGYIYASFK 216 (262)
T ss_dssp SS--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE-ECCTTCTTCCEEEEEEESS
T ss_pred CC--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE-EEEccCCCcccEEEEeeCC
Confidence 51 122347889999999999999962 123344444444443222322 2232232 23457788887
Q ss_pred C
Q 006662 620 Y 620 (636)
Q Consensus 620 ~ 620 (636)
+
T Consensus 217 ~ 217 (262)
T 2cmg_A 217 T 217 (262)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=9.5e-05 Score=79.80 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=77.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchh--hccccccCCCCCccceeeeccc-c
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTY--QNWCEAMSTYPRTYDLIHADSI-F 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~--~~~ce~~~~yp~t~Dl~H~~~~-f 549 (636)
..+|||+|||+|+|+.+++..+.- |+.+|.++.++..+.++ |+-..+ .|..+.+..++..||+|.++-- |
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 568999999999999999887642 66778887788777654 442111 1222222333544999998643 2
Q ss_pred ccCCC-----CcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCceEEe
Q 006662 550 SLYKD-----RCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 550 s~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
+..+. ......++.++-|+|+|||++++.. ..+....+++.+.....+..+.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 21111 1133578899999999999999653 2234556666665555555443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.44 E-value=5.8e-05 Score=76.93 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=63.0
Q ss_pred cceEeeecccchhhhhhhcC--CCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCC----CCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVD--DPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY----PRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~y----p~t~Dl~ 543 (636)
..+|||+|||.|+++.+|++ .+- -.|+.+|.+...+..+.++ |+ +-+++ |. +.+... +..||+|
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADM-RKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH-HHHHHHHHHTTCCEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh-HhcchhhhhccccCCEE
Confidence 56899999999999988875 221 1345556666677776655 54 22222 11 112221 4689999
Q ss_pred eeccccccCC---------------CCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 544 HADSIFSLYK---------------DRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 544 H~~~~fs~~~---------------~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
-++--+|... -.-....+|-++-|+|||||.++++
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s 210 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS 210 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8873333210 0023468899999999999999996
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.37 E-value=2.3e-05 Score=78.30 Aligned_cols=101 Identities=12% Similarity=0.018 Sum_probs=55.5
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-cccc-ccCCCC----Cccce
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCE-AMSTYP----RTYDL 542 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce-~~~~yp----~t~Dl 542 (636)
...+|||+|||.|.++..|+++.- ...|+.+|.++.++..+.++ |+ +-+++ |..+ -+..++ .+||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 356899999999999988876410 13566777777788877664 44 33333 2111 122344 58999
Q ss_pred eeeccccccCC---C---------CcCHHHHHHHHhhcccCCcEEEE
Q 006662 543 IHADSIFSLYK---D---------RCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 543 ~H~~~~fs~~~---~---------~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
|-++--|-... . ......++-++.|+|||||.+.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 99874432111 0 01112445566666666665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 636 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 0.002 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 6/146 (4%)
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
++++I K ++ R +D CG L R V + + +
Sbjct: 28 DFVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP--WGQYDGLYLIEVDRVLRPGGYWILSG 320
+ + + FD I + +V L+PGG +I
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 321 PPVNWESHWKGWNRTTEDLKSEQNGI 346
P W + + K E+ +
Sbjct: 146 P--CWFYGGRDGPVVWNEQKGEEKLV 169
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 40.0 bits (93), Expect = 5e-04
Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 19/163 (11%)
Query: 198 PRGADA-YIDDIGKLI---NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAP 248
R D +I L+ G ++ G G + +Y++ + V
Sbjct: 63 RRNTQIISEIDASYIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDE 120
Query: 249 RDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR 308
+ +A + + + + I + +D IP ++ ++
Sbjct: 121 DNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD---IPDPWN---HVQKIAS 174
Query: 309 VLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 351
+++PG P N++ K + +E + R
Sbjct: 175 MMKPGSVATFYLP--NFDQSEKTVLSLSASGMHHLETVELMKR 215
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (88), Expect = 0.002
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 17/163 (10%)
Query: 197 FPRGADAY----IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTH 252
R I ++++K+G IDTG G + A L + +
Sbjct: 80 MKRRTQIVYPKDSSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 137
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312
E + A + +I++ S FD + Y+ + L+
Sbjct: 138 EEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWN-YIDKCWEALKG 196
Query: 313 GGYWILSGPPVNWESHWKGWNRTTEDLK----SEQNGIETIAR 351
GG + P N T + L+ E++ R
Sbjct: 197 GGRFATVCPTTNQ------VQETLKKLQELPFIRIEVWESLFR 233
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/140 (15%), Positives = 36/140 (25%), Gaps = 3/140 (2%)
Query: 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261
+ D I + + +D CG + L + + ++ +
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80
Query: 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG---LYLIEVDRVLRPGGYWIL 318
I +R FD+ C + Y V L+ GG +I
Sbjct: 81 SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
Query: 319 SGPPVNWESHWKGWNRTTED 338
S G N D
Sbjct: 141 DINSYYKLSQVLGNNDFNYD 160
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 636 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.69 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.68 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.62 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.6 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.55 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.55 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.51 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.5 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.49 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.46 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.46 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.44 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.44 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.44 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.43 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.43 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.42 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.4 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.37 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.37 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.31 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.28 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.27 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.26 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.23 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.16 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.15 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.13 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.12 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.12 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.08 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.04 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.02 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.02 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.02 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.01 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.01 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.99 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.97 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.96 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.94 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.92 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.9 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.87 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.82 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.82 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.81 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.76 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.76 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.76 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.75 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.72 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.72 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.72 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.72 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.7 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.66 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.64 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.63 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.58 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.58 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.56 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.55 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.53 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.52 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.49 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.47 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.44 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.43 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.42 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.41 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.4 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.39 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.36 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.36 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.35 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.27 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.24 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.23 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.23 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.21 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.19 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.16 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.16 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.13 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.09 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.09 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.07 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.06 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.05 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.01 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.01 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.99 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.96 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.95 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.93 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.92 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.9 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.88 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.85 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.83 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.82 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.68 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.67 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.65 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.63 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.45 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.42 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.4 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.37 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.36 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.29 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.29 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.25 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.25 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.23 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.16 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.12 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.09 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.07 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.06 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.02 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 96.98 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.95 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 96.88 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 96.88 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.86 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 96.77 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.77 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.65 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 96.59 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 96.49 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 96.41 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.4 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 96.38 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.32 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.29 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.22 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.22 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.12 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 96.1 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.08 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 96.03 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 95.92 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.88 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 95.86 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 95.85 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 95.81 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.62 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.59 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.43 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.41 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 95.18 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 94.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.48 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.44 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 94.23 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 94.17 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 93.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 93.66 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 93.52 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.26 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 93.22 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.21 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.87 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 92.73 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.47 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.4 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 92.19 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.16 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.87 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.55 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.48 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 90.72 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 90.47 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.17 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 90.01 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.69 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.49 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.27 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 88.59 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 88.5 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 88.39 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 87.76 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.64 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 87.31 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 87.26 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 85.53 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 85.5 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 85.24 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 83.82 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.44 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.53 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 82.08 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 81.81 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.63 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 80.92 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 80.38 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 80.37 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=1.4e-16 Score=156.72 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=98.5
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP 277 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp 277 (636)
.+.+.+.+.++++++. +|||||||+|.++..|++++..++++ |+|+.|++.|+++ + .++.+.++|...+|
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gv---D~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~ 77 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGV---DATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEE---eCChhhhhhhhhhhccccccccccccccccccc
Confidence 3556788888888888 99999999999999999998777777 9999999888644 3 35889999999999
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|+|..+++| .+++..+++++.|+|||||+++++..
T Consensus 78 ~~~~~fD~v~~~~~l~~-~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 78 FPDDSFDIITCRYAAHH-FSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp SCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceeeeeceeec-ccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 99999999999999955 56899999999999999999999753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.68 E-value=1e-16 Score=156.42 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=94.5
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~~ 280 (636)
.++.+.+++.++. +|||||||+|.++..+++++..++++ |+++.+++.|+++ + .++.+.+++...+|+++
T Consensus 5 ~~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v~gv---D~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 5 AKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAF---DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCCEEEEE---ECCHHHHhhhhhcccccccccccccccccccccccc
Confidence 4566777777777 99999999999999999998877777 9999999888654 2 46889999999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+|..+++|+ +++..+++++.|+|||||++++..+
T Consensus 80 ~~fD~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccc-CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999999999999555 5899999999999999999999753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=1.1e-15 Score=147.55 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=86.6
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
.+|||||||+|.++..|++.+..++++ |+|+.|++.|+++ +..+.+...|...+|+++++||+|+|..+++|+
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~~v~gi---D~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcchhhhhHhhhhcccccc---cccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 389999999999999999998887787 9999999888754 456788888999999999999999999999776
Q ss_pred cc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. +...+|+++.|+|||||+|++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 42 447899999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=6.6e-16 Score=151.09 Aligned_cols=98 Identities=26% Similarity=0.421 Sum_probs=86.1
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~ 299 (636)
.+|||||||+|.++..|++.+..++++ |+|+.+++.|++++... +..++...+|+++++||+|+|...+.|+.+++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~ 119 (246)
T d2avna1 44 CRVLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 119 (246)
T ss_dssp CEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CEEEEECCCCchhcccccccceEEEEe---ecccccccccccccccc-cccccccccccccccccceeeecchhhhhhhH
Confidence 489999999999999999998888888 99999999999987654 45688999999999999999875444556789
Q ss_pred HHHHHHHHhcccCCcEEEEEeC
Q 006662 300 GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 300 ~~~L~el~RvLKPGG~Liis~p 321 (636)
..+|+++.|+|||||+++++.+
T Consensus 120 ~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 120 DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhhcCcCcEEEEEEC
Confidence 9999999999999999999875
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.61 E-value=1.7e-15 Score=153.24 Aligned_cols=108 Identities=16% Similarity=0.255 Sum_probs=91.4
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPS 280 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~ 280 (636)
+....++.++. +|||||||+|.++..|+++ +..++++ |+++.+++.|+++ ++ .+.+..++...+|+++
T Consensus 59 l~~~~~l~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 59 LAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCL---NIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHhcCCCCCC--EEEEeCCCCcHHHhhhhccCCcEEEEE---eccchhhhhhhcccccccccccccccccccccccccc
Confidence 33333455555 9999999999999999987 7777777 8899999888754 33 5889999999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+|..+++|+. ++..+++++.|+|||||+|++..+
T Consensus 134 ~sfD~V~~~~~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 134 NSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp TCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhccchhhhcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999997774 889999999999999999999864
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.4e-15 Score=149.00 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
....++.+.+.+.+.++. +|||||||+|.++..++++ +..++++ |+|+.|++.|+++ ++ .+.+..+|.
T Consensus 18 ~~~~~~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~Gv---D~s~~~~~~ar~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGI---DMSSLFTAQAKRRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEEE---ecccchhhHHHHHHHHhhccccchhhhhHH
Confidence 355677889999888887 9999999999999999886 7788888 9999999888765 44 378998998
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+ +++++||+|+|..+++|+. ++..+++++.|+|||||++++..+
T Consensus 93 ~~~-~~~~~fD~v~~~~~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGY-VANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTC-CCSSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhc-cccCceeEEEEEehhhccC-CHHHHHHHHHHHcCcCcEEEEEec
Confidence 887 5688999999999996664 889999999999999999999864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=6.7e-15 Score=148.57 Aligned_cols=107 Identities=23% Similarity=0.395 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~ 279 (636)
+..++.+.+.+ +....+|||||||+|.++..|++. +..++++ |+++.+++.|+++..++.+.++|...+|++
T Consensus 71 ~~~~~~l~~~~---~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~ 144 (268)
T d1p91a_ 71 DAIVAQLRERL---DDKATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFS 144 (268)
T ss_dssp HHHHHHHHHHS---CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBC
T ss_pred HHHHHHHHHhc---CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEe---cchHhhhhhhhcccccccceeeehhhccCC
Confidence 33334444443 333458999999999999999987 5677777 999999999999988999999999999999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+++||+|++..++++ +.|+.|+|||||+|+++.|.
T Consensus 145 ~~sfD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 145 DTSMDAIIRIYAPCK--------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp TTCEEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEEC
T ss_pred CCCEEEEeecCCHHH--------HHHHHHHhCCCcEEEEEeeC
Confidence 999999999887744 47899999999999999874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=1.2e-14 Score=139.60 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=95.8
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChH
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG 300 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~ 300 (636)
+|||||||+|.++..+.+ + +++ |+|+.+++.|++++ +.+.+++...+|+++++||+|+|+.+++|+ +++.
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~--~gi---D~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--K--IGV---EPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DDPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--C--EEE---ESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCHH
T ss_pred eEEEECCCCcccccccce--E--EEE---eCChhhcccccccc--cccccccccccccccccccccccccccccc-cccc
Confidence 799999999999988854 2 345 78999999998875 678889999999999999999999999666 5899
Q ss_pred HHHHHHHhcccCCcEEEEEeCCCCcc------ccccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 301 LYLIEVDRVLRPGGYWILSGPPVNWE------SHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 301 ~~L~el~RvLKPGG~Liis~p~~~w~------~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
.+++++.|+|+|||.+++..+..... .....+...........+++.+++++.+++.+
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998644311 00000000001001123557788888888765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.51 E-value=2.1e-14 Score=143.93 Aligned_cols=137 Identities=11% Similarity=0.130 Sum_probs=99.1
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCC---CeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~---~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
..+|||+|||+|.++..|+.+ ...+..+ |+++.+++.|+++.. .+.+.+.+...+++++++||+|+|..+++|
T Consensus 94 ~~~vLD~GcG~G~~t~~ll~~~~~~v~~v---D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 94 TSRALDCGAGIGRITKNLLTKLYATTDLL---EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCSEEEEE---ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCeEEEecccCChhhHHHHhhcCceEEEE---cCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 458999999999999998866 3345555 889999999987642 367888899999999999999999999988
Q ss_pred cccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecc
Q 006662 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 295 ~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~ 360 (636)
+.++. ..+|+++.++|||||++++..+........ +......+....+.++++++..+|+.+..
T Consensus 171 l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~--~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 171 LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL--VDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE--EETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce--ecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 76332 588999999999999999986422111100 11111111123455777888888877653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.50 E-value=3.9e-14 Score=133.09 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=87.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-----------------CCeEEE
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----------------VPALIG 269 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-----------------~~~~~~ 269 (636)
+....+.+.++. +|||+|||+|..+.+|+++|..++++ |+|+.+++.|+++. ....+.
T Consensus 11 ~~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 11 QYWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCCceEee---cccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 344445556666 99999999999999999999998888 99999999998752 223566
Q ss_pred EeccccCC-CCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 270 VMASIRLP-YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 270 ~~d~~~Lp-f~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+...++ ....+||+|++..++++...+. ..+++++.++|||||++++...
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 66666665 3357899999999997765433 7899999999999999888653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=5.9e-14 Score=138.18 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=83.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecc-ccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSR-CLI 293 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~-~L~ 293 (636)
..+|||||||+|.++..|++++..++++ |+|++|++.|+++ +.++.+.+++...++++ +.||+|+|.. +++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~v~gv---D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYEVVGL---DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCccchhhcccceEEEEE---eeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 3489999999999999999998887777 9999999988755 56789999999999987 5899999975 444
Q ss_pred ccc-cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~-~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+. ++...+|+++.++|||||+|++..+
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 432 2336899999999999999999865
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2e-14 Score=140.26 Aligned_cols=136 Identities=13% Similarity=0.045 Sum_probs=100.1
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
..+|||||||+|.++..|+++ ...++++ |+|+.+++.|+++. ..+.+.+++...+++++++||+|++..++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFREVDMV---DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEE---ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCCEEEEe---ecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 458999999999999998766 4456666 99999999998763 23588899999999999999999999999
Q ss_pred cccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecc
Q 006662 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 293 ~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~ 360 (636)
+|+.+.. ..+++++.++|||||.+++..+....... +...........+.+.++++..+|+.+..
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI---LDDVDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE---EETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc---cccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 7775322 57999999999999999998642111110 00111111123456778888889987653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.46 E-value=1.4e-13 Score=135.75 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=88.1
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPS 280 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~ 280 (636)
.+.+.+++........+|||||||+|.++..|++++..++++ |+|++|++.|+++ +.++.+.++|...++++
T Consensus 24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~Gv---D~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~- 99 (246)
T d1y8ca_ 24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAV---DLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN- 99 (246)
T ss_dssp HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEE---CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEee---ccchhhhhhccccccccCccceeeccchhhhccc-
Confidence 344555554433344589999999999999999999888888 9999999988754 56789999999888764
Q ss_pred CCeeEEEec-ccccccc--cChHHHHHHHHhcccCCcEEEEEe
Q 006662 281 RAFDMAHCS-RCLIPWG--QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 281 ~sFDlV~~s-~~L~h~~--~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++||+|+|. .++.|+. .+...+|+++.++|||||.|++..
T Consensus 100 ~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 689999986 4454443 233679999999999999999874
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.46 E-value=1.3e-13 Score=134.88 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=105.5
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~ 299 (636)
+|||||||+|.++..|++++..++++ |+++++++.|+++.. ++.+..++...+++ +++||+|+|..+++|. +++
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~gi---D~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~-~d~ 97 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI-DDP 97 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEE---ESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC-SSH
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEE---eCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEec-CCH
Confidence 79999999999999999998777777 889999999987743 57788888777765 5789999999999665 589
Q ss_pred HHHHHHHH-hcccCCcEEEEEeCCCCccc-----------cccCCCCchh----hhHHHHHHHHHHHHHhceEeeccccc
Q 006662 300 GLYLIEVD-RVLRPGGYWILSGPPVNWES-----------HWKGWNRTTE----DLKSEQNGIETIARSLCWKKLIQKKD 363 (636)
Q Consensus 300 ~~~L~el~-RvLKPGG~Liis~p~~~w~~-----------~~~~W~~t~e----~l~~~~~~ie~la~~l~Wk~v~~~~~ 363 (636)
..+|.++. |+|||||++++..|..+... ....+..... ......+.++++++..+++.+...
T Consensus 98 ~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~-- 175 (225)
T d2p7ia1 98 VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS-- 175 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE--
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE--
Confidence 99999997 89999999999987433110 0000100000 001124568888888888865432
Q ss_pred EEEEeCCCCC
Q 006662 364 LAIWQKPTNH 373 (636)
Q Consensus 364 ~aIWqKp~~~ 373 (636)
.++-||.++
T Consensus 176 -~~~~kp~~~ 184 (225)
T d2p7ia1 176 -GIFFKALAN 184 (225)
T ss_dssp -EEEECCSCH
T ss_pred -EEEeccccH
Confidence 345567653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.44 E-value=3.6e-13 Score=128.91 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=82.0
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
+|||||||+|.++.+|++++..++++ |+++.+++.++++ +. .+.+...|...+++ +++||+|+|..+++|+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTAW---DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFL 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGS
T ss_pred cEEEECCCCCHHHHHHHHHhhhhccc---cCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecC
Confidence 89999999999999999999888887 9999999877533 43 46778788877775 5789999999999777
Q ss_pred ccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.... ..+++++.++|+|||++++...
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5444 6899999999999999999753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=3.3e-13 Score=131.66 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=77.2
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||||||+|..+..|++. +..++++ |+|+.|++.|+++ +. ...+...+ ..+++...+|+|+|+
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~gi---D~S~~ml~~A~~~~~~~~~~~~~~~~~~d--~~~~~~~~~d~i~~~ 115 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNVKIIGI---DNSQPMVERCRQHIAAYHSEIPVEILCND--IRHVEIKNASMVILN 115 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSCEEEEE---CSCHHHHHHHHHHHHTSCCSSCEEEECSC--TTTCCCCSEEEEEEE
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCCceEEe---CCCHHHHHHHHHHhHhhcccchhhhccch--hhccccccceeeEEe
Confidence 38999999999999999874 5667777 9999999999865 22 34444444 445566789999999
Q ss_pred ccccccc-cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~-~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++. +++..+|++++|+|||||.|++..+
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 9996654 3558999999999999999999865
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.2e-13 Score=130.93 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC------------------
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG------------------ 263 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg------------------ 263 (636)
..+++.+.+++...++. +|||+|||+|..+.+|+++|..++++ |+|+.+++.|+++.
T Consensus 31 ~~l~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~~V~gv---D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGHSVVGV---EISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp HHHHHHHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTCEEEEE---CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCCcEEEE---eCCHHHHHHHHHHhhccccccchhccccccee
Confidence 34445566666555555 99999999999999999999998888 99999999887542
Q ss_pred ----CCeEEEEeccccCC-CCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 264 ----VPALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 264 ----~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+.+.+.|...++ ...+.||+|+...+++++.++. ..+++++.++|||||++++...
T Consensus 106 ~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 24667777777765 5678999999999998887555 7899999999999999888754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.3e-13 Score=138.48 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=97.7
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCCCeEEEE
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGV 270 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~ 270 (636)
..|..|.++..+.+.+.+.....++.+|||+|||+|.++..+++.+..++++ |+++.+++.|++ ++++..+..
T Consensus 97 ~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gv---Dis~~av~~A~~na~~n~~~~~~~~ 173 (254)
T d2nxca1 97 MAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGV---DIDPMVLPQAEANAKRNGVRPRFLE 173 (254)
T ss_dssp -----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEE---ESCGGGHHHHHHHHHHTTCCCEEEE
T ss_pred cccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEE---ECChHHHHHHHHHHHHcCCceeEEe
Confidence 3345555555556666554322233499999999999999999988877777 888888877764 467777777
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHH
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la 350 (636)
++... .++.++||+|+++.... ....++.++.++|||||+|++++.- ....+.+.+.+
T Consensus 174 ~d~~~-~~~~~~fD~V~ani~~~----~l~~l~~~~~~~LkpGG~lilSgil-----------------~~~~~~v~~~~ 231 (254)
T d2nxca1 174 GSLEA-ALPFGPFDLLVANLYAE----LHAALAPRYREALVPGGRALLTGIL-----------------KDRAPLVREAM 231 (254)
T ss_dssp SCHHH-HGGGCCEEEEEEECCHH----HHHHHHHHHHHHEEEEEEEEEEEEE-----------------GGGHHHHHHHH
T ss_pred ccccc-cccccccchhhhccccc----cHHHHHHHHHHhcCCCcEEEEEecc-----------------hhhHHHHHHHH
Confidence 77543 35678999999975442 2367889999999999999998641 01124566778
Q ss_pred HHhceEeec
Q 006662 351 RSLCWKKLI 359 (636)
Q Consensus 351 ~~l~Wk~v~ 359 (636)
+..+|+.+.
T Consensus 232 ~~~Gf~~~~ 240 (254)
T d2nxca1 232 AGAGFRPLE 240 (254)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCEEEE
Confidence 888887665
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.43 E-value=3.6e-13 Score=136.46 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
+.+++.+.+.+. ....+.+|||||||+|.++..|++. +..++++ |+++.+++.|+++ +.++.+...|..
T Consensus 12 ~d~l~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi---D~s~~~l~~a~~~~~~~~~~~~f~~~d~~ 87 (281)
T d2gh1a1 12 DDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT 87 (281)
T ss_dssp HHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ECCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEE---ecchhHhhhhhcccccccccccccccccc
Confidence 445555554432 1223458999999999999999875 4566667 8899999988755 446788889998
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++++ ++||+|+|..+++|+ +++..+++++.++|||||++++..|
T Consensus 88 ~~~~~-~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 88 EIELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TCCCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccc-CCceEEEEehhhhcC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 88876 579999999999655 5899999999999999999999876
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=2.6e-13 Score=137.95 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEEec
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMA 272 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~~d 272 (636)
.....++.+.+.+.+++|. +|||||||+|.++.+++++ +..++++ ++|+++++.|+++ +.. +.+...|
T Consensus 36 AQ~~k~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~gi---~ls~~q~~~a~~~~~~~~l~~~~~~~~~d 110 (280)
T d2fk8a1 36 AQYAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGL---TLSKNQHARCEQVLASIDTNRSRQVLLQG 110 (280)
T ss_dssp HHHHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTSCCSSCEEEEESC
T ss_pred HHHHHHHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEEe---cchHHHHHHHHHHHHhhccccchhhhhhh
Confidence 3445567777777777777 9999999999999999977 8888888 8999999888755 333 4444444
Q ss_pred cccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
...+ +++||.|++..+++|+.... ..+++++.++|||||.+++..
T Consensus 111 ~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 111 WEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 4333 46899999999998886433 789999999999999999974
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=3.8e-13 Score=137.49 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=91.7
Q ss_pred CcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEE
Q 006662 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GVP--ALIG 269 (636)
Q Consensus 197 f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~ 269 (636)
+.+.....++.+.+.+.+.+|. +|||||||.|.++.+++++ ++.++++ ++|+.+++.++++ +.. +.+.
T Consensus 42 L~~Aq~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~gi---t~s~~q~~~a~~~~~~~~l~~~v~~~ 116 (291)
T d1kpia_ 42 LEEAQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGL---TLSENQYAHDKAMFDEVDSPRRKEVR 116 (291)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceeec---cchHHHHHHHHHHHHhhccchhhhhh
Confidence 3444455677788888888877 9999999999999999875 8888888 8899998877644 433 3444
Q ss_pred EeccccCCCCCCCeeEEEecccccccccC--------hHHHHHHHHhcccCCcEEEEEe
Q 006662 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 270 ~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d--------~~~~L~el~RvLKPGG~Liis~ 320 (636)
..| .++++++||.|+|..+++|+.+. -..+++++.++|||||.+++..
T Consensus 117 ~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 117 IQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp ECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 333 34567899999999999998642 3789999999999999999975
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=7.5e-13 Score=134.94 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred CcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEE
Q 006662 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G--VPALIG 269 (636)
Q Consensus 197 f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~ 269 (636)
..+.....++.+++.+.+.+|. +|||||||.|.++.++++. ++.++++ .+|+.|++.|+++ + ..+.+.
T Consensus 43 L~eAQ~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~gi---t~s~~Q~~~a~~~~~~~g~~~~v~~~ 117 (285)
T d1kpga_ 43 LQEAQIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGL---TLSKNQANHVQQLVANSENLRSKRVL 117 (285)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEEE---eccHHHHHHHHHHHHhhhhhhhhHHH
Confidence 4455566677788888888877 9999999999999998876 8888888 8899999888654 2 246677
Q ss_pred EeccccCCCCCCCeeEEEecccccccccC-hHHHHHHHHhcccCCcEEEEEe
Q 006662 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 270 ~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~Liis~ 320 (636)
..|...++ ++||.|++..+++|+... ...+++++.|+|||||.+++..
T Consensus 118 ~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 118 LAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp ESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred Hhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 77766554 679999999999998643 3789999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.37 E-value=1.1e-12 Score=130.28 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=82.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCCC-CCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPY-PSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lpf-~~~sFDlV~~s~~ 291 (636)
.+|||||||+|..+..+++.+. .++++ |+|+.+++.|+++ + ..+.+.++|....++ .+++||+|+|..+
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~~v~Gi---D~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEE---ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CEEEEecccCcHHHHHHHHcCCCeEEEe---cCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 3899999999999999998865 56777 9999999998755 2 247788888877776 4678999999999
Q ss_pred ccccccCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
++|..... ..++.++.++|||||+|+++.+
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 97765443 5799999999999999999865
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=1e-12 Score=125.75 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=94.9
Q ss_pred cCCceecCCC-CCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc
Q 006662 184 QGDRFSFPGG-GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 184 ~g~~~~F~gg-g~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er 262 (636)
.|..+.|... +-+.+.+.+...+.+.+.+...++. +|||+|||+|.++..+++.+..++.+ |+++.+++.++++
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~v~~i---D~s~~~i~~a~~n 93 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTMA---DINRRAIKLAKEN 93 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEEE---ESCHHHHHHHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCCC--eEEEEeecCChhHHHHHhhcccccee---eeccccchhHHHH
Confidence 3555555322 2233444444455677777665555 99999999999999999987766666 8899999888753
Q ss_pred ----C---CCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 263 ----G---VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 263 ----g---~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ..+.+...|... ++++++||+|+|+..+++..+....++.++.++|+|||.+++..
T Consensus 94 ~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 94 IKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp HHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 2 246777777655 66788999999998874433223789999999999999998864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.31 E-value=1.1e-11 Score=117.87 Aligned_cols=111 Identities=17% Similarity=0.086 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~ 275 (636)
.+....+...+...+++ +|||+|||+|.++..+++....++++ |+++.+++.|+++ +. ++.+..++...
T Consensus 19 ~eir~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~av---D~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~ 93 (186)
T d1l3ia_ 19 MEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAI---DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (186)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEECCeEcccccccccceEEEEe---cCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence 44555677777777666 99999999999999999987777777 8999999888754 43 67888888888
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.+...||+|++..... +...++.++.+.|||||++++...
T Consensus 94 ~~~~~~~~D~v~~~~~~~----~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccccCCcCEEEEeCccc----cchHHHHHHHHHhCcCCEEEEEee
Confidence 878888999999977552 346899999999999999998854
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.1e-13 Score=130.75 Aligned_cols=148 Identities=11% Similarity=-0.072 Sum_probs=94.4
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCC----Ce---------------
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGV----PA--------------- 266 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~----~~--------------- 266 (636)
.+.+.+......+.+|||||||+|.++..++..+. .++++ |+|+.+++.|+++.. ..
T Consensus 40 ~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~gi---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (257)
T d2a14a1 40 CLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLS---DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 116 (257)
T ss_dssp HHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEE---ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTC
T ss_pred HHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEe---cCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccc
Confidence 34444433333456999999999999888877754 45566 899999998875411 00
Q ss_pred ----------------EEEEe----ccccCCCCCCCeeEEEecccccccccC---hHHHHHHHHhcccCCcEEEEEeCCC
Q 006662 267 ----------------LIGVM----ASIRLPYPSRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 267 ----------------~~~~~----d~~~Lpf~~~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~Liis~p~~ 323 (636)
..... +....+++.++||+|++..+++|.... ...+++++.|+|||||+|++..+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 117 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 01111 122345778999999999999877643 3579999999999999999987532
Q ss_pred CccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 324 NWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 324 ~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
...... +...........+.++++++..||+.+.
T Consensus 197 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 197 LPSYMV--GKREFSCVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp CCEEEE--TTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccccee--ccccccccCCCHHHHHHHHHHCCCEEEE
Confidence 211100 0011111111245677788888887543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.8e-12 Score=127.13 Aligned_cols=98 Identities=12% Similarity=-0.016 Sum_probs=73.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc------C--CEEEEcCcCCchHHHHHHHHHcC------CCeE--EEEeccc------cCC
Q 006662 220 RTAIDTGCGVASWGAYLMSR------N--ILAVSFAPRDTHEAQVQFALERG------VPAL--IGVMASI------RLP 277 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~--v~vv~i~p~Dis~a~l~~A~erg------~~~~--~~~~d~~------~Lp 277 (636)
.+|||||||+|.++..+++. + +.++++ |+++.+++.++++. ..+. +...... ..+
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~v---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV---EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEE---CCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEE---eCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 37999999999998887654 2 233455 99999999987652 1222 2322222 235
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++++||+|+|..+++| .+++..+++++.++|+|||++++..+
T Consensus 119 ~~~~~fD~I~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceeEEEEccceec-CCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 67899999999999955 56899999999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=5.5e-12 Score=127.81 Aligned_cols=114 Identities=18% Similarity=0.319 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-----CeEEEEec
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-----PALIGVMA 272 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-----~~~~~~~d 272 (636)
..+.+.+.+++...++. +|||+|||+|.++..|++++..++++ |+|+.|++.|+++ +. ...+..++
T Consensus 42 ~~~~~~l~~~l~~~~~~--~vLD~GcG~G~~~~~la~~g~~v~gv---D~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGFSVTSV---DASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEESSCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhhcCCC--EEEEecCCCcHHHHHHHHcCCeeeec---cCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence 44555666666655544 89999999999999999999888887 9999999988754 22 12333343
Q ss_pred ccc----CCCCCCCeeEEEecc-ccccccc------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIR----LPYPSRAFDMAHCSR-CLIPWGQ------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~----Lpf~~~sFDlV~~s~-~L~h~~~------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
... +| ..++||+|+|.. ++.|+.. +...+|+++.|+|||||+|++...
T Consensus 117 ~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 117 WLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 322 22 346899999864 6666542 235799999999999999999754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=3.1e-11 Score=121.40 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc--------CCCeEEEEecc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER--------GVPALIGVMAS 273 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er--------g~~~~~~~~d~ 273 (636)
+..|..++.+.+|. +|||+|||+|.++.+|++. .-.++++ |+++++++.|+++ ..++.+...|.
T Consensus 85 ~s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~---d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEe---cCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 34677778888888 9999999999999999986 3466677 8899999988753 13678888898
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...++++++||.|++ +. ++|..++.++.++|||||.+++..|
T Consensus 160 ~~~~~~~~~fDaV~l-----dl-p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 160 ADSELPDGSVDRAVL-----DM-LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GGCCCCTTCEEEEEE-----ES-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccccccCCCcceEEE-----ec-CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 888999999999986 33 4778899999999999999999877
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=4.3e-11 Score=118.90 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=77.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcCC--CeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg~--~~~~~~~d~~~Lpf 278 (636)
.+.+.++.... ++|||||||+|.++..++++ +..++.+ |+. .+++.++ +.+. .+.+..+|... +.
T Consensus 71 ~~~~~~d~~~~--~~VLDvGcG~G~~~~~la~~~p~~~~~~~---D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~ 143 (253)
T d1tw3a2 71 APAAAYDWTNV--RHVLDVGGGKGGFAAAIARRAPHVSATVL---EMA-GTVDTARSYLKDEGLSDRVDVVEGDFFE-PL 143 (253)
T ss_dssp HHHHHSCCTTC--SEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECT-THHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHhhcCCccC--CEEEEeCCCCCHHHHHHHHhcceeEEEEc---cCH-HHHHHHHHHHHHhhcccchhhccccchh-hc
Confidence 44455554433 49999999999999999987 5666666 442 3344333 3333 47788777643 23
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+||+|++..+++||.++. ..+|+++.++|||||+|++...
T Consensus 144 -~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 144 -PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp -SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 35799999999998886433 5789999999999999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=5.8e-11 Score=115.54 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=82.3
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~ 275 (636)
....+.+.+.++++. +|||||||+|.++..|++. ...++.+ |+++.+++.|+++ + .++.+...|...
T Consensus 63 ~~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~i---d~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 63 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSV---EYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred hhHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEe---ecchhhHHHhhhhHhhhcccccccccCchHH
Confidence 445677778778877 9999999999999999875 3455666 7888888888754 2 356777778777
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.++.+++||+|++..++.+.+ .++.+.|||||.+++..
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred ccccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 777788999999999886554 35678899999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.8e-11 Score=118.59 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccc--
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG----VPALIGVMASI-- 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~-- 274 (636)
..+.+.+++.+. ..| .+|||||||+|..+.++++.+. .++.+ |+++.+++.|+++. ..+.+...+..
T Consensus 40 ~~~~~~la~~~~-~~g--~~VLdIGcG~G~~a~~~a~~~~~~v~~i---d~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 40 TPYMHALAAAAS-SKG--GRVLEVGFGMAIAASKVQEAPIDEHWII---ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHHHHHT-TTC--EEEEEECCTTSHHHHHHHTSCEEEEEEE---ECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-cCC--CeEEEeeccchHHHHHHHHcCCCeEEEe---CCCHHHHHHHHHHhhhccccccccccccccc
Confidence 445556666553 233 4899999999999999998753 44455 88999999997653 23444444433
Q ss_pred cCCCCCCCeeEEEe-----cccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 275 RLPYPSRAFDMAHC-----SRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~-----s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
..++++++||.|+. ...++|+. +...+++++.|+|||||+|++.
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccceeeccccccccccccc-CHHHHHHHHHHHcCCCcEEEEE
Confidence 34577889999983 45554443 6688999999999999999875
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=5.8e-11 Score=118.79 Aligned_cols=151 Identities=16% Similarity=0.039 Sum_probs=96.0
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCC--C--------------
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--P-------------- 265 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~--~-------------- 265 (636)
..++.+.+.+......+.+|||||||+|.+....+.. ...++++ |+++.+++.++++.. +
T Consensus 39 ~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~---D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~ 115 (263)
T d2g72a1 39 WKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMT---DFLEVNRQELGRWLQEEPGAFNWSMYSQHACL 115 (263)
T ss_dssp HHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEE---CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEE---eCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence 3345555655544444569999999999887665554 4456666 999999998864310 0
Q ss_pred -------------------eEEEEeccc------cCCCCCCCeeEEEecccccccccCh---HHHHHHHHhcccCCcEEE
Q 006662 266 -------------------ALIGVMASI------RLPYPSRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 266 -------------------~~~~~~d~~------~Lpf~~~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Li 317 (636)
......|.. ..+.+.++||+|++.+++++...+. ..+++++.++|||||+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li 195 (263)
T d2g72a1 116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195 (263)
T ss_dssp HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 011222221 1234467899999999998876554 678999999999999999
Q ss_pred EEeCCCC-ccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 318 LSGPPVN-WESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 318 is~p~~~-w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+.+.... +.... ......+.-..+.+.++++..|++.+.
T Consensus 196 ~~~~~~~~~~~~~---~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 196 LIGALEESWYLAG---EARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp EEEEESCCEEEET---TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred EecccCCcccccC---CcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 9875222 11100 011111222345677888888887653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.12 E-value=1.5e-10 Score=114.09 Aligned_cols=135 Identities=9% Similarity=0.034 Sum_probs=90.8
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccC-CCCCCCee
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRL-PYPSRAFD 284 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~L-pf~~~sFD 284 (636)
.+++++|. +|||+|||+|.++..|++.. -.++++ |+++.+++.+.++. .++.....+.... ++.+..+|
T Consensus 69 ~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aV---DiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 69 VMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAI---EYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEE---ESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCC
T ss_pred hCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEE---eCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccce
Confidence 34556666 99999999999999999873 345566 88999998887552 3455555554433 35566777
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
++++...+ ++.+++..++.++.+.|||||+++++..... . .+... .....++..+.++..+++.+.
T Consensus 144 v~~i~~~~-~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~--~---d~~~~---~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 144 VDVIYEDV-AQPNQAEILIKNAKWFLKKGGYGMIAIKARS--I---DVTKD---PKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp EEEEEECC-CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG--T---CSSSC---HHHHHHHHHHHHHHHTEEEEE
T ss_pred eEEeeccc-cchHHHHHHHHHHHHhcccCceEEEEeeccc--c---CCCCC---HHHHHHHHHHHHHHcCCEEEE
Confidence 77766656 4455678899999999999999999853111 0 01111 123345566667777887664
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.12 E-value=7.2e-11 Score=117.84 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=76.8
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcCC--CeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg~--~~~~~~~d~~~Lpf 278 (636)
.+.+.++.... ++|||||||+|.++..++++ +..++.+ |+. .+++.++ +.+. .+.+...+... +.
T Consensus 72 ~~~~~~d~~~~--~~vlDvG~G~G~~~~~l~~~~P~~~~~~~---Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~ 144 (256)
T d1qzza2 72 APADAYDWSAV--RHVLDVGGGNGGMLAAIALRAPHLRGTLV---ELA-GPAERARRRFADAGLADRVTVAEGDFFK-PL 144 (256)
T ss_dssp HHHHTSCCTTC--CEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECH-HHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHhcCCCccC--CEEEEECCCCCHHHHHHHHhhcCcEEEEe---cCh-HHHHHHHHHHhhcCCcceeeeeeeeccc-cc
Confidence 34444444433 49999999999999999998 5666666 653 4454443 2233 36666666543 44
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+ ..||+|++.++|++|.++. ..+|+++.++|||||.|+|..+
T Consensus 145 p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 145 P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred c-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 4 4599999999998886433 5789999999999999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.08 E-value=1.7e-10 Score=111.65 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=78.8
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccCC--CCCCCeeEEEeccc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLP--YPSRAFDMAHCSRC 291 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~Lp--f~~~sFDlV~~s~~ 291 (636)
.|||||||+|.++..||+. +..++++ |+++.++..|.+ .+. ++.+..+|+..+. ++++++|.|++.+.
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGi---D~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGI---ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEe---ecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 7999999999999999997 4666677 888888877653 344 6888988887775 88999999998776
Q ss_pred ccccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 292 LIPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 292 L~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
. +|.... ..++.++.|+|||||.|++.+
T Consensus 109 ~-P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred c-ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6 666433 479999999999999999974
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.4e-10 Score=110.16 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=79.9
Q ss_pred HHHHHhh--ccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C------CCeEEEE
Q 006662 206 DDIGKLI--NLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G------VPALIGV 270 (636)
Q Consensus 206 d~L~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g------~~~~~~~ 270 (636)
..+.++| .+.+|. +|||||||+|..++.|++. ...++++ |+++.+++.|+++ + ..+.+..
T Consensus 64 a~~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~i---e~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (224)
T d1i1na_ 64 AYALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIGI---DHIKELVDDSVNNVRKDDPTLLSSGRVQLVV 138 (224)
T ss_dssp HHHHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred HHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEE---cCCHHHHHHHHHhccccCcccccccceEEEE
Confidence 4566666 345665 9999999999999988875 4466677 8888888887643 1 3567788
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|....+.+.+.||+|++..++.+.+ .++.+.|||||++++..
T Consensus 139 gD~~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 139 GDGRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred eecccccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEE
Confidence 88888887888999999998885543 46789999999999964
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=2.3e-10 Score=111.07 Aligned_cols=101 Identities=9% Similarity=0.007 Sum_probs=73.5
Q ss_pred hccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCCCCC---Ce
Q 006662 212 INLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSR---AF 283 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf~~~---sF 283 (636)
+++++|. +|||+|||+|..+.++++. ...++++ |+++.+++.++++ ..++.+...+....+.... .+
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gv---Dis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAV---EYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEE---CCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEE---eCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE
Confidence 4566666 9999999999999999986 2356666 8899998877543 2467777777666554433 45
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++. + +...+...++.++.++|||||++++..
T Consensus 127 d~v~~~--~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 127 DLIYQD--I-AQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEEEC--C-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEec--c-cChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 555442 3 233356889999999999999999985
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.02 E-value=5.5e-10 Score=109.57 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=81.2
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf~~~s 282 (636)
..+.+.+.+.++. +|||||||+|.+++.|++....++++ |+++.+++.|+++ ..++.+..+|......+.+.
T Consensus 60 a~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~ai---E~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 60 IFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSV---EINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccc---cccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence 3566777788777 99999999999999999987777777 8888888888765 34678888776554445678
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
||.|++..++.+.+ ..+.+.|||||+|++-
T Consensus 135 fD~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLL-------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCC-------HHHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhh-------HHHHHhcCCCCEEEEE
Confidence 99999988875544 3566889999999985
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.02 E-value=3.8e-10 Score=112.52 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=79.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp 277 (636)
.+...+.+.+|. +|||+|||+|.++.+|++. +..++++ |.++.+++.|+++ + .++.+...|....
T Consensus 76 ~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~v---D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 76 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVV---ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 149 (250)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEE---CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred HHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence 355667778877 9999999999999999975 3456667 8899999998764 1 3577887777654
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++. . +++..++.++.++|||||+|++..|
T Consensus 150 ~~~~~fD~V~ld-----~-p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 150 ISDQMYDAVIAD-----I-PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CCSCCEEEEEEC-----C-SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred cccceeeeeeec-----C-CchHHHHHHHHHhcCCCceEEEEeC
Confidence 567899999863 2 3667889999999999999999877
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=7.7e-10 Score=113.95 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchH---HHHHHHHHcCC--CeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHE---AQVQFALERGV--PALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~---a~l~~A~erg~--~~~~~~~d~~~ 275 (636)
..|.+.|.+.....++. +|||||||+|.++..++++|. .++.+ |.++ .+.+.+++++. .+.+..++...
T Consensus 24 ~~y~~aI~~~~~~~~~~--~VLDlGcGtG~ls~~aa~~Ga~~V~av---d~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~ 98 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGV---DMSSIIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEE---ESSTHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcC--EEEEeCCCCCHHHHHHHHhCCCEEEEE---eCCHHHHHHHHHHHHhCccccceEEEeehhh
Confidence 34555555444444555 999999999999999999874 55555 4443 22233334443 57888889999
Q ss_pred CCCCCCCeeEEEecccccccc--cChHHHHHHHHhcccCCcEEEE
Q 006662 276 LPYPSRAFDMAHCSRCLIPWG--QYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~--~d~~~~L~el~RvLKPGG~Lii 318 (636)
+++++++||+|++.....+.. .....++.++.|+|||||.++=
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 999999999999976654333 2347889999999999998863
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=1e-10 Score=111.69 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=74.3
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCcCH
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEM 558 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~ 558 (636)
+|||+|||+|.|+.+|.+. +.+|.++.++..+.+|++ -.+....+.++..+.+||+|++.+++.... +.
T Consensus 39 ~vLDiGcG~G~~~~~~~~~-------~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---CH
T ss_pred eEEEECCCCcccccccceE-------EEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---cc
Confidence 6999999999999998652 356777899999999986 444455566655569999999998888664 47
Q ss_pred HHHHHHHhhcccCCcEEEEEe
Q 006662 559 EDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 559 ~~~l~e~dRiLrPgG~~i~~d 579 (636)
..+|.|+.|+|||||.++|.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEe
Confidence 899999999999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.1e-09 Score=111.69 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHH---HHHcC--CCeEEEEeccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQF---ALERG--VPALIGVMASI 274 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~---A~erg--~~~~~~~~d~~ 274 (636)
.+.|.+.|.+.....+++ +|||||||+|.++..+++.|. .++++ |.++.+... +.+++ ..+.+...+..
T Consensus 20 ~~~y~~ai~~~~~~~~~~--~VLDiGcG~G~lsl~aa~~Ga~~V~ai---d~s~~~~~a~~~~~~~~~~~~i~~~~~~~~ 94 (311)
T d2fyta1 20 TESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGV---DQSEILYQAMDIIRLNKLEDTITLIKGKIE 94 (311)
T ss_dssp HHHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEE---ESSTHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhccccCCcC--EEEEECCCCCHHHHHHHHcCCCEEEEE---eCHHHHHHHHHHHHHhCCCccceEEEeeHH
Confidence 355666666555544555 899999999999999999874 56666 566655432 23333 35788889999
Q ss_pred cCCCCCCCeeEEEecccccccccC--hHHHHHHHHhcccCCcEEEEE
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~Liis 319 (636)
.++++.++||+|++....++.... ...++....++|||||+++-.
T Consensus 95 ~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 95 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred HhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 999999999999997655443322 267788889999999999743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=9.4e-10 Score=112.75 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCC--CeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~--~~~~~~~d~~~Lpf 278 (636)
+.|.+.|.+.....+++ +|||||||+|.++..+++.|. .+++++.......+.+.+..++. .+.+...+...+++
T Consensus 19 ~~y~~ai~~~~~~~~~~--~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~ 96 (316)
T d1oria_ 19 LTYRNSMFHNRHLFKDK--VVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL 96 (316)
T ss_dssp HHHHHHHHTCHHHHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred HHHHHHHHhccccCCcC--EEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHccc
Confidence 44544554333333455 899999999999999999863 45566332222333344444443 47888899999999
Q ss_pred CCCCeeEEEeccccccccc--ChHHHHHHHHhcccCCcEEEE
Q 006662 279 PSRAFDMAHCSRCLIPWGQ--YDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~Lii 318 (636)
+.++||+|++....+.... ....++..+.|+|||||.++-
T Consensus 97 ~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 97 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 9999999999766533332 347899999999999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.97 E-value=1.3e-09 Score=105.35 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=77.5
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccCC--CCCCCeeEEEeccc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLP--YPSRAFDMAHCSRC 291 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~Lp--f~~~sFDlV~~s~~ 291 (636)
.|||||||+|.++..+|+. ....+++ |+++.++..|.+ .+. ++.+..+|+..+. +++.++|.|++.+.
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGi---d~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGI---DIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEE---eccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 7999999999999999987 5566677 888887776643 343 6888888887765 78899999998775
Q ss_pred ccccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 292 LIPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 292 L~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
- +|.... ..+|..+.++|||||.|++.+
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4 775432 579999999999999999974
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3.8e-10 Score=116.64 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc--------------
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER-------------- 262 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er-------------- 262 (636)
+.....++.+.+.+.+.+++ +|||||||+|.++..+++. +. .++++ |+++.+++.|++.
T Consensus 134 e~~~~~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gi---d~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGV---EKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp CCCHHHHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEE---ECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEE---eCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 33455667777777777777 9999999999999998875 33 56677 8888888777532
Q ss_pred CCCeEEEEeccccCCCCCCCe--eEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 263 GVPALIGVMASIRLPYPSRAF--DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 263 g~~~~~~~~d~~~Lpf~~~sF--DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..++.+..+|...+++.+..| |+|+++. +.++ ++....|.++.|+|||||.++...
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~-~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNN-FAFG-PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCceEEEECcccccccccccCcceEEEEcc-eecc-hHHHHHHHHHHHhCCCCcEEEEec
Confidence 246889999998888776555 6677654 4243 466889999999999999998764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=3.3e-09 Score=106.50 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=81.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
..|..++.+.+|. +|||+|||+|.++.+|++. +..++++ |+++.+++.|+++ +. .+.+...|. ..
T Consensus 93 ~~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~v---D~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~ 166 (266)
T d1o54a_ 93 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAY---EKREEFAKLAESNLTKWGLIERVTIKVRDI-SE 166 (266)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEE---CCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GG
T ss_pred HHHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHhccccCcEEEeccc-cc
Confidence 4577788888888 9999999999999999875 3466677 8999999988754 32 244444443 34
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++...||.|+. +. +++..++.++.++|||||.|++..|
T Consensus 167 ~~~~~~~D~V~~-----d~-p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 167 GFDEKDVDALFL-----DV-PDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp CCSCCSEEEEEE-----CC-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred cccccceeeeEe-----cC-CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 567788999874 33 4778899999999999999999876
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=4.2e-09 Score=108.55 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC----------------CCe
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG----------------VPA 266 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg----------------~~~ 266 (636)
..|..++.+.+|. +|||+|||+|.++..|++. +-.++++ |+++.+++.|+++. .++
T Consensus 88 ~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~---E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv 162 (324)
T d2b25a1 88 NMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISF---EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 162 (324)
T ss_dssp HHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEE---ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred HHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEe---cCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence 4567778888888 9999999999999999986 3456677 88999998887531 246
Q ss_pred EEEEeccccCC--CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 267 LIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 267 ~~~~~d~~~Lp--f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+...|..... +++..||.|+. +. ++|..++.++.++|||||.|++..|
T Consensus 163 ~~~~~di~~~~~~~~~~~fD~V~L-----D~-p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 163 DFIHKDISGATEDIKSLTFDAVAL-----DM-LNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp EEEESCTTCCC-------EEEEEE-----CS-SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred eEEecchhhcccccCCCCcceEee-----cC-cCHHHHHHHHHHhccCCCEEEEEeC
Confidence 77777766543 45778999986 22 3556789999999999999999877
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.90 E-value=8.6e-10 Score=111.57 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=85.2
Q ss_pred HHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccccccC
Q 006662 460 RVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMS 534 (636)
Q Consensus 460 ~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~ 534 (636)
+.+.+..++..++- ....+|||+|||.|+++.+++++ ++ +|+.++.+++++..+.+| |+...+..-...+.
T Consensus 37 Q~~k~~~~~~~l~l-~~g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 37 QYAKVDLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 34445556555554 55889999999999999999865 54 445555566777665554 77665554455566
Q ss_pred CCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 535 TYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 535 ~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+|.+||.|-+.++|.....+ ..+.+|-++.|+|+|||.++|.+
T Consensus 113 ~~~~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 113 DFAEPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GCCCCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhccchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEEE
Confidence 678999999999998765443 67899999999999999999863
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.88 E-value=1.1e-09 Score=109.90 Aligned_cols=96 Identities=26% Similarity=0.299 Sum_probs=73.0
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~ 545 (636)
...+|||+|||.|+++.+|+++ +. +|+.+|.++.++..+.++ || +.+++ |+ +.+ ++| .+||+|.+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l-~~~~~sfD~V~~ 141 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEI-PCEDNSYDFIWS 141 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSC-SSCTTCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccc-ccc-cccccccchhhc
Confidence 3679999999999999999875 43 556777776788777765 44 23333 33 233 355 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++|.... +.+.+|-|+.|+|||||.+++.|
T Consensus 142 ~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 142 QDAFLHSP---DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhcc---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 88876554 46899999999999999999974
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.87 E-value=9.3e-10 Score=106.15 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=72.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
-.+|||+|||.|.|+.+|++..- +|+.+|.+++++..+.++ |+ +..++.=.+.+ ++| .+||+|+|..++
T Consensus 16 ~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-~~~~~~fD~v~~~~~l 91 (231)
T d1vl5a_ 16 NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERFHIVTCRIAA 91 (231)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCEEEEEEESCG
T ss_pred cCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccccc-cccccccccccccccc
Confidence 66899999999999999998754 566778777888876543 44 23333222333 355 899999998877
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
... -+.+.+|-|+.|+|+|||+++|.+
T Consensus 92 ~~~---~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 92 HHF---PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 644 357899999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=9e-10 Score=107.27 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=74.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
...|||+|||+|.++..|+++. -+|+.+|.++.+++.+.++ |+ +..+..=.+.+ ++| .+||+|.|.++|
T Consensus 17 ~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l 92 (234)
T d1xxla_ 17 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIITCRYAA 92 (234)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEEEESCG
T ss_pred CCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccceeeeecee
Confidence 6679999999999999999874 3778889888898887554 33 33333222343 366 999999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
... .+.+.+|-|+.|+|||||++++.+
T Consensus 93 ~~~---~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 93 HHF---SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecc---cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 643 357999999999999999999974
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=1.8e-09 Score=105.35 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-
Q 006662 454 TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ- 527 (636)
Q Consensus 454 ~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~- 527 (636)
...+...+..+.+++..... .....|||+|||+|.++..|++.+. +|+.+|.+++++..+.++ |+ +-.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~ 95 (251)
T d1wzna1 20 IERVKAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQG 95 (251)
T ss_dssp HHTHHHHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEES
T ss_pred hhhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheeh
Confidence 33444445555566655555 5577999999999999999998874 788889998999988876 33 22221
Q ss_pred ccccccCCCCCccceeeec-cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 528 NWCEAMSTYPRTYDLIHAD-SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 528 ~~ce~~~~yp~t~Dl~H~~-~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+ +.+ +++..||+|.|. ++|... +..+....|-++.|+|||||.+||..
T Consensus 96 d~-~~l-~~~~~fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 96 DV-LEI-AFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CG-GGC-CCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hh-hhc-ccccccchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 21 222 356899999984 455543 33467789999999999999999953
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=1.5e-09 Score=103.62 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=80.7
Q ss_pred HHHHHHHhhhc-cCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cc-hhhccccccC--
Q 006662 460 RVTYYKSVDYQ-LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IG-TYQNWCEAMS-- 534 (636)
Q Consensus 460 ~v~~y~~~~~~-l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~-~~~~~ce~~~-- 534 (636)
++.+...++.. |.+ -.+|||+|||.|.++..|++.+. +|+.+|.+.+++..+.++-. .+ .....|....
T Consensus 23 ~~~~~~~~~~~~l~~---~~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l 96 (226)
T d1ve3a1 23 RIETLEPLLMKYMKK---RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL 96 (226)
T ss_dssp HHHHHHHHHHHSCCS---CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC
T ss_pred HHHHHHHHHHHhcCC---CCEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccc
Confidence 34444444432 444 24699999999999999998875 57778888899988876532 01 1112233222
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 535 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 535 ~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
++| .+||+|.|.++|..... -++..+|-|+-|+|+|||.++|.+.
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCcCceEEEEecchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 244 89999999888876532 3577899999999999999999864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=1.4e-08 Score=99.50 Aligned_cols=101 Identities=8% Similarity=0.026 Sum_probs=73.3
Q ss_pred hccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccc---cCCCCCCC
Q 006662 212 INLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASI---RLPYPSRA 282 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~---~Lpf~~~s 282 (636)
+++.+|. +|||+|||+|.++.+|++. .-.++++ |+++.+++.++++ .........+.. ..+.....
T Consensus 69 l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aV---D~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 69 FPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGI---EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred cccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEE---eCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence 4456666 9999999999999999986 3345566 8888888877644 223455555542 23344568
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+|++.. +...+...++.++.+.|||||+++++.
T Consensus 144 vD~i~~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 144 VDVIFEDV---AQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEEc---cccchHHHHHHHHHHhcccCCeEEEEE
Confidence 99998743 333455889999999999999999984
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=1.2e-09 Score=107.12 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=73.8
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYD 541 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~D 541 (636)
|.+ ..+|||+|||.|+++.+|++. +.. |+.+|.++.++..+.++ |+ +...+ |+-+ + ..+.+||
T Consensus 31 l~p---g~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD 102 (245)
T d1nkva_ 31 MKP---GTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VANEKCD 102 (245)
T ss_dssp CCT---TCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCSSCEE
T ss_pred CCC---CCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-cccCcee
Confidence 555 568999999999999999764 654 45667777888887776 66 22222 3222 1 2358999
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|+|.+++.... +.+.+|-||.|+|||||.++|.+
T Consensus 103 ~v~~~~~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 103 VAACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEEEehhhccC---CHHHHHHHHHHHcCcCcEEEEEe
Confidence 999988877555 45899999999999999999975
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=4e-09 Score=101.93 Aligned_cols=97 Identities=22% Similarity=0.377 Sum_probs=74.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-Cccceeeec-cccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHAD-SIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~-~~fs~~~~ 554 (636)
-..|||+|||.|.++..|++.+. .|+.+|.++.++..+.+++..-.+..=.+.+ +|| .+||+|-|. +++....
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l-~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDL-PFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSC-CSCTTCEEEEEECSSHHHHCS-
T ss_pred CCEEEEECCCCchhcccccccce---EEEEeeccccccccccccccccccccccccc-ccccccccceeeecchhhhhh-
Confidence 34699999999999999999865 5677788889999999998743222112343 355 899998874 3554332
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+.+.+|-|+.|+|+|||.++++..
T Consensus 118 --d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 --NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 457899999999999999999853
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=1.5e-08 Score=99.10 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=77.7
Q ss_pred HHHHHhh--ccCCCCCcEEEEeCCCCcHHHHHHhhc----C----CEEEEcCcCCchHHHHHHHHHc----------CCC
Q 006662 206 DDIGKLI--NLKDGSIRTAIDTGCGVASWGAYLMSR----N----ILAVSFAPRDTHEAQVQFALER----------GVP 265 (636)
Q Consensus 206 d~L~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~----~----v~vv~i~p~Dis~a~l~~A~er----------g~~ 265 (636)
..+.++| .+.++. +|||||||+|.+++.|++. + ..++++ |.++++++.|+++ ..+
T Consensus 68 a~~l~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~i---E~~~~l~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 68 AFALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGI---EHQAELVRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEE---ESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEE---ecCHHHHHHHHHhhhhcchhhcCccE
Confidence 3556665 455666 9999999999999888875 2 255666 7788888777543 236
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+.+...|......+.+.||.|++..++.+.+ ..+.+.|||||++++-.
T Consensus 143 v~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 143 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred EEEEecccccccccccceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 7888888877766778999999998885443 35678999999998853
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.76 E-value=2.2e-08 Score=97.26 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=80.0
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP 277 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp 277 (636)
....+.+.+.+.++. +|||||||+|..++.|++. +..++.+ +.++.+++.|+++ + .++.+..+|.....
T Consensus 66 ~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~i---e~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~ 140 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTI---ERIPELVEFAKRNLERAGVKNVHVILGDGSKGF 140 (215)
T ss_dssp HHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred hHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEE---eccHHHHHHHHHHHHHcCCceeEEEECccccCC
Confidence 445677788888887 9999999999999999876 5445555 6677777776543 3 46888888887766
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
...+.||.|++..++.+.+ ..+...|+|||++++-.
T Consensus 141 ~~~~pfD~Iiv~~a~~~ip-------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred cccCcceeEEeecccccCC-------HHHHHhcCCCCEEEEEE
Confidence 6678899999988885543 24567899999999863
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=4.9e-09 Score=101.30 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=88.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc---cchhhccc---cccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWC---EAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~~~c---e~~~~yp~t~Dl~H~~~~ 548 (636)
.....|||+|||.|.++.+|+++.. ..|..+|.+++++..+.++-- ...++-.| +.+..-+.+||+|.+.++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 4467899999999999999876643 255666888889999877632 11111122 234433589999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H-----HHHHHHHHHhcCCCceEEec
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------D-----ILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~-----~~~~~~~~~~~~~W~~~~~~ 602 (636)
+....+. ++..+|-++-|+|||||.+++.|.. + ....++++++.--+++.-.+
T Consensus 137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 8765432 3567999999999999999997421 1 35778888888788765443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=5.1e-09 Score=104.71 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=66.6
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCCCccceeeecccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
.+..+|||+|||.|.+..+|++. ++ +++.+|.++.++..+.++.- +.....=.+.++.-+.+||+|.+...+.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~- 158 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC- 158 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence 56789999999999999999876 33 45667888889999888753 1211111233332349999998744332
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
-+-|+.|||||||++++...
T Consensus 159 ---------~~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 159 ---------KAEELARVVKPGGWVITATP 178 (268)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEE
T ss_pred ---------HHHHHHHHhCCCcEEEEEee
Confidence 15799999999999999853
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.72 E-value=4.5e-09 Score=101.70 Aligned_cols=100 Identities=9% Similarity=0.164 Sum_probs=81.8
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
...|||+|||+|....+|++. +- .+|+.+|.++.|++.+.++ +....++..+..+..+| ..+|++.+..+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 458999999999998887642 22 3788889999999999876 66777777777788887 88999999777
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+... +.-+...+|-||-|+|+|||.+|+.|
T Consensus 118 l~~~-~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 118 LQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GGGS-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 7554 33467899999999999999999985
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=5.1e-08 Score=98.00 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=95.5
Q ss_pred CCCCCCcccH-HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC
Q 006662 192 GGGTMFPRGA-DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV 264 (636)
Q Consensus 192 ggg~~f~~g~-~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~ 264 (636)
+.+.+.|... +..++.....+. ....+|||+|||+|..+..++.. ...++.+ |+|+.+++.|+++ +.
T Consensus 84 ~~~VlIPRpeTE~lv~~~l~~~~---~~~~~vlDlGtGSG~I~i~la~~~p~~~v~av---Dis~~Al~~A~~Na~~~~~ 157 (274)
T d2b3ta1 84 SPATLIPRPDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAV---DRMPDAVSLAQRNAQHLAI 157 (274)
T ss_dssp CTTSCCCCTTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEE---CSSHHHHHHHHHHHHHHTC
T ss_pred eccccccccchhhhhhhHhhhhc---ccccceeeeehhhhHHHHHHHhhCCcceeeec---cchhHHHhHHHHHHHHhCc
Confidence 3455556543 335554444332 23358999999999999999876 5666777 9999999988755 44
Q ss_pred -CeEEEEeccccCCCCCCCeeEEEeccccccccc----------C--------------hHHHHHHHHhcccCCcEEEEE
Q 006662 265 -PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ----------Y--------------DGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 265 -~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~----------d--------------~~~~L~el~RvLKPGG~Liis 319 (636)
++.+...|... ++++++||+|+|+.-..+-.+ + ...++.++.+.|+|||.+++.
T Consensus 158 ~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 158 KNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 47787777543 456779999999864432110 0 025788899999999999997
Q ss_pred eCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 320 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 320 ~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
.... ..+.+.++++..+|..+
T Consensus 237 ig~~------------------q~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 237 HGWQ------------------QGEAVRQAFILAGYHDV 257 (274)
T ss_dssp CCSS------------------CHHHHHHHHHHTTCTTC
T ss_pred ECch------------------HHHHHHHHHHHCCCCeE
Confidence 4311 02346677777788543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.72 E-value=6.7e-09 Score=105.20 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=75.5
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCC-C--eEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccce
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-P--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDL 542 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~--v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl 542 (636)
.++..++- +....|||+|||.||+|.++++. + |..+++.+.... ...+.+.+.|+.+-+.--+..+...|.+||-
T Consensus 53 ~~~~~l~l-~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~-~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~ 130 (285)
T d1kpga_ 53 LALGKLGL-QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQAN-HVQQLVANSENLRSKRVLLAGWEQFDEPVDR 130 (285)
T ss_dssp HHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHH-HHHHHHHTCCCCSCEEEEESCGGGCCCCCSE
T ss_pred HHHHHcCC-CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHH-HHHHHHHhhhhhhhhHHHHhhhhcccccccc
Confidence 33333443 44788999999999999988654 4 444555443332 2334456667766555444455666889999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|=+.+.|-...++ ....+|-++.|+|||||.+++.
T Consensus 131 i~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 131 IVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp EEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred eeeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEE
Confidence 8888888654332 4578999999999999999984
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.72 E-value=4.2e-09 Score=104.64 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCCC
Q 006662 463 YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYPR 538 (636)
Q Consensus 463 ~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp~ 538 (636)
....++..+.. ....+|||+|||.|.++.+|+.+.. -+|..+|.++.++..+.++ ..+-.++.=.+.|..-+.
T Consensus 81 ~s~~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (254)
T d1xtpa_ 81 GSRNFIASLPG-HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSS
T ss_pred HHHHHHhhCCC-CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCC
Confidence 34455555555 5678899999999999999876522 1345556677899888766 222222211133332348
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCCceEEec
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------------ILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~ 602 (636)
+||+|.+..+|....+. ++..+|.++-|+|+|||+++|.|... ....++++++.--+++.-.+
T Consensus 158 ~fD~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 158 TYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp CEEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred ccceEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 99999998888755432 45688999999999999999975321 24567777776667665444
Q ss_pred c
Q 006662 603 H 603 (636)
Q Consensus 603 ~ 603 (636)
.
T Consensus 237 ~ 237 (254)
T d1xtpa_ 237 F 237 (254)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=7.1e-09 Score=105.28 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=77.8
Q ss_pred HHHhhhccCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHH----HhhcccchhhccccccCCCCC
Q 006662 464 YKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAMSTYPR 538 (636)
Q Consensus 464 y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~----~eRgli~~~~~~ce~~~~yp~ 538 (636)
+..++..++- .....|||+|||.||++.+|++ .++ +|+.++.+.+++..+ .+.||....+.-+..+...+.
T Consensus 50 ~~~~~~~l~l-~~G~~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE 125 (291)
T ss_dssp HHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCC
T ss_pred HHHHHHhcCC-CCCCEEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccc
Confidence 3444444444 4578899999999999999975 465 344445555665554 445776655533344455568
Q ss_pred ccceeeeccccccCCCC------cCHHHHHHHHhhcccCCcEEEEE
Q 006662 539 TYDLIHADSIFSLYKDR------CEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~------c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+||.|=+.+.|..-.+. -..+.+|-++.|+|||||.+++.
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 99999998888754432 23579999999999999999985
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=1.7e-08 Score=106.84 Aligned_cols=116 Identities=11% Similarity=0.077 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcC-----------C
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERG-----------V 264 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg-----------~ 264 (636)
.+-.-.++..+.+.+.+.+++ ++||||||+|.++..++.. +. .++++ |+++.+++.|+++. .
T Consensus 198 GEl~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GI---DiS~~~i~~Ak~~~~e~~~~~~~~g~ 272 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGC---EIMDDASDLTILQYEELKKRCKLYGM 272 (406)
T ss_dssp CCBCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEE---ECCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred ccCCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEE---eCCHHHHHHHHHHHHHHhhhhhhhcc
Confidence 344456677788888888887 9999999999999999876 44 67777 88999988886431 1
Q ss_pred ---CeEEE-EeccccCCCC---CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 265 ---PALIG-VMASIRLPYP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 265 ---~~~~~-~~d~~~Lpf~---~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
...+. ..+....++. -..+|+|+++. + ++.++....|.++.|+|||||.++.+.
T Consensus 273 ~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~-~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 273 RLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-F-LFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-T-TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccceeeeeechhhccccccccccceEEEEec-c-cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 12221 1222221111 13478888754 3 234466899999999999999998864
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.64 E-value=1.4e-08 Score=99.22 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=74.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhhccccccCCC--CCccceeeec-cc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMSTY--PRTYDLIHAD-SI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~~~ce~~~~y--p~t~Dl~H~~-~~ 548 (636)
.++|||+|||.|.++..|++.+. +|+.+|.++.+|..+.+| |+ +-.+ |..+..+ +++||+|=|. ++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~---~~d~~~~~~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLA---CQDISNLNINRKFDLITCCLDS 111 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEE---CCCGGGCCCSCCEEEEEECTTG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceee---ccchhhhcccccccccceeeee
Confidence 46899999999999999999875 677889999999998876 43 2222 2333333 5899988763 56
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|....+.-++..+|-++-|+|+|||.+|+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 666666667788999999999999999984
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2.2e-08 Score=97.81 Aligned_cols=123 Identities=7% Similarity=-0.007 Sum_probs=85.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-----c-------------chhhc--------
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-----I-------------GTYQN-------- 528 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-----i-------------~~~~~-------- 528 (636)
.....|||+|||.|.++..+++... -+|+.+|.+++++..+.++-- + |.+..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3467899999999999988887754 478888888899988876511 0 00000
Q ss_pred -----------cc--cccCCCC-CccceeeeccccccCC-CCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------
Q 006662 529 -----------WC--EAMSTYP-RTYDLIHADSIFSLYK-DRCEMEDVLLEMDRILRPEGSVIIRDDVD----------- 582 (636)
Q Consensus 529 -----------~c--e~~~~yp-~t~Dl~H~~~~fs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------- 582 (636)
-. ....++| .+||+|-+..++.... .+-+...++-++-|+|||||++|+.+-..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~ 207 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 207 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence 01 1122344 8999998876665432 23355689999999999999999975221
Q ss_pred -----HHHHHHHHHhcCCCceE
Q 006662 583 -----ILVKIKSITDGMEWEGR 599 (636)
Q Consensus 583 -----~~~~~~~~~~~~~W~~~ 599 (636)
..+.|+++++.--+++.
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred cccCCCHHHHHHHHHHCCCEEE
Confidence 35677788887777654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=1.2e-07 Score=88.52 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEecccc
Q 006662 202 DAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~ 275 (636)
+...+.+.+++.. ..+. +|||+|||+|.++.+++.++..++.+ |.++.+++.++++ +....+...+...
T Consensus 25 ~~v~e~lf~~l~~~~~~g~--~vLDl~~G~G~~~i~a~~~ga~vv~v---D~~~~a~~~~~~N~~~~~~~~~v~~~~~d~ 99 (171)
T d1ws6a1 25 VRLRKALFDYLRLRYPRRG--RFLDPFAGSGAVGLEAASEGWEAVLV---EKDPEAVRLLKENVRRTGLGARVVALPVEV 99 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCC--EEEEETCSSCHHHHHHHHTTCEEEEE---CCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred HHHHHHHHHHhhccccCCC--eEEEeccccchhhhhhhhccchhhhc---ccCHHHHhhhhHHHHhhccccceeeeehhc
Confidence 3344455555542 3344 89999999999999999999887766 9999999887644 4555555444322
Q ss_pred ----CCCCCCCeeEEEecccccccccChHHHHHHH--HhcccCCcEEEEEeC
Q 006662 276 ----LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEV--DRVLRPGGYWILSGP 321 (636)
Q Consensus 276 ----Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~Liis~p 321 (636)
......+||+|++.--+ ..+....+.++ ..+|+|||++++..+
T Consensus 100 ~~~~~~~~~~~fD~If~DPPY---~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPPY---AMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCT---TSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ccccccccCCccceeEEcccc---ccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 22455789999986533 22333344443 358999999998764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.58 E-value=1.3e-08 Score=98.64 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=70.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cchhhccccccCCCCCccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|.++..|++.+- .|+.+|.+++++..+.+|.- +-..+.--+.+. .|.+||+|.+.++|....
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC-
Confidence 34699999999999999988742 45666777789998877733 222221112222 369999999999987554
Q ss_pred CcCHHHHHHHH-hhcccCCcEEEEEe
Q 006662 555 RCEMEDVLLEM-DRILRPEGSVIIRD 579 (636)
Q Consensus 555 ~c~~~~~l~e~-dRiLrPgG~~i~~d 579 (636)
+...+|.|+ +|+|+|||.++|..
T Consensus 96 --d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 96 --DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhcCCCceEEEEe
Confidence 457889998 59999999999973
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.56 E-value=4.9e-08 Score=92.51 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=88.4
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc--hhhccccccCCCC-Ccccee
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG--TYQNWCEAMSTYP-RTYDLI 543 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~--~~~~~ce~~~~yp-~t~Dl~ 543 (636)
+.. ....+|||+|||.|.++.+|++..- +|..+|.++..+..+.++ |+-. +-.-++..+..++ .+||+|
T Consensus 48 l~~-~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~I 123 (194)
T d1dusa_ 48 VVV-DKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKI 123 (194)
T ss_dssp CCC-CTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEE
T ss_pred CCc-CCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEE
Confidence 444 5578999999999999999987532 556667777788877653 3311 1112334444444 899999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
-++..|... .-.++.++-++.|+|+|||.+++.. .......+.+.++..-+++...... ..-+||-++|
T Consensus 124 i~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 124 ITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp EECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred EEcccEEec--chhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 998776322 1124678999999999999987743 2223344445555554555543222 2457888877
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.55 E-value=1.2e-08 Score=100.59 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=72.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----c---chhh-ccccccCCC-CCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----I---GTYQ-NWCEAMSTY-PRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i---~~~~-~~ce~~~~y-p~t~Dl~H~~~ 547 (636)
..+|||+|||.|++...+++.+. -+|+.+|.++.++..+.+|-. . -.++ |. ...+.. ..+||+|.|.+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTSCCCCSSCEEEEEEES
T ss_pred cCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-hhhcccccccceEEEEcc
Confidence 56899999999999999987665 367888999999999988732 1 1111 11 112222 37999999876
Q ss_pred ccccC-CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++-.. .+.-++..+|-++.|+|||||++|++-
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 66543 233456789999999999999999863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.53 E-value=4.3e-07 Score=90.36 Aligned_cols=121 Identities=11% Similarity=0.099 Sum_probs=84.6
Q ss_pred ceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc---
Q 006662 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER--- 262 (636)
Q Consensus 187 ~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er--- 262 (636)
.|.+.-..++|-.+.......+.+.+ .+|. +|||+|||+|.++..+++++ ..++.+ |+++.+++.++++
T Consensus 80 ~~~~d~~~~~f~~~~~~er~ri~~~~--~~g~--~VlD~~aG~G~~~l~~a~~~~~~V~av---d~n~~a~~~~~~N~~~ 152 (260)
T d2frna1 80 KYKLDVAKIMFSPANVKERVRMAKVA--KPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAI---EKDPYTFKFLVENIHL 152 (260)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC--CTTC--EEEETTCTTTTTHHHHHHHTCCEEEEE---CCCHHHHHHHHHHHHH
T ss_pred eEEeccccccEecCCHHHHHHHHhhc--CCcc--EEEECcceEcHHHHHHHHhCCcEEEEe---cCCHHHHHHHHHHHHH
Confidence 34433334455455444444555553 4555 99999999999999999886 466677 8899888887644
Q ss_pred -CC--CeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 263 -GV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 263 -g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+. .+.+..+|...++ +.+.||.|++... .....++.++.++|++||++.+..
T Consensus 153 n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 153 NKVEDRMSAYNMDNRDFP-GENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp TTCTTTEEEECSCTTTCC-CCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred hCCCceEEEEEcchHHhc-cCCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEEe
Confidence 43 3677888877665 3578999987532 233568889999999999987653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.1e-08 Score=97.63 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=75.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc------cchhhccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQNWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------i~~~~~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.++.+|++.+. -+|+.+|.++.++..+.++.- ....+++......+| .+||+|-.+.+.
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 56899999999999999998764 467777888789999887753 123345555556677 788887655554
Q ss_pred ccC--CCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 550 SLY--KDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 550 s~~--~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+.+ .+.-+.+.++.|+-|+|||||.|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 433 34445678999999999999999885
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.49 E-value=3.8e-08 Score=93.17 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=71.7
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccC--CCCCccceeeeccccccC
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMS--TYPRTYDLIHADSIFSLY 552 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~--~yp~t~Dl~H~~~~fs~~ 552 (636)
+|||+|||.|.++.+|++++. .|+.+|.++.+++.+.+ .|+- .++..+..+. .++.+||+|.|..+|...
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEEEEeeeeecC
Confidence 699999999999999999875 55667777778887543 3442 2222233333 346999999998888755
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. .-....+|-++-|+|+|||++++.
T Consensus 109 ~-~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 109 E-AQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp C-TTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred C-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 346789999999999999999996
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.49 E-value=5.1e-08 Score=97.86 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=70.9
Q ss_pred CCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
.+..+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +-..+ |. +.+ +++.+||+|+|
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~-~~~~~fD~v~~ 100 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEI-ELNDKYDIAIC 100 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT-TTC-CCSSCEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhccccccccccccccccc-ccc-cccCCceEEEE
Confidence 44678999999999999888763 22 345567777888877665 33 11122 22 222 35688999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++|.... +.+.+|-++-|+|||||++++.|
T Consensus 101 ~~~l~~~~---d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 101 HAFLLHMT---TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ESCGGGCS---SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehhhhcCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99887544 45899999999999999999975
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=1.9e-08 Score=101.25 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=72.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhh-------cccc--ccCCCCCccce
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-------NWCE--AMSTYPRTYDL 542 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~-------~~ce--~~~~yp~t~Dl 542 (636)
..++|||+|||+|.++..|++.+. +|+.+|.++++|..+.++ +.....+ +|-. .-.++..+||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 357899999999999999999874 688899999999988765 3322221 1211 11233478999
Q ss_pred eeecc-ccccCC----CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 543 IHADS-IFSLYK----DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 543 ~H~~~-~fs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|-|.+ +|.... ..-++..+|-|+-|+|||||.+||.-
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 88743 455332 22346689999999999999999963
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.44 E-value=3.7e-07 Score=86.71 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=67.4
Q ss_pred CCCcEEEEeCCCCcH----HHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc--------CCC---------------
Q 006662 217 GSIRTAIDTGCGVAS----WGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------GVP--------------- 265 (636)
Q Consensus 217 g~~r~VLDIGCGtG~----~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er--------g~~--------------- 265 (636)
+...+|+++|||+|. ++..+.+. +. -+.+.+.|++...++.|++. ..+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~-~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPG-RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTT-SEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCC-ceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence 445689999999995 44444432 11 12344449999999888631 000
Q ss_pred -------------eEEEEecccc-CCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 266 -------------ALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 266 -------------~~~~~~d~~~-Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+.+...+... .+.+.+.||+|+|.++|+++.+.. .++++.+.+.|+|||+|++..
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1122222222 123457899999999998776443 789999999999999988763
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.43 E-value=3e-08 Score=91.98 Aligned_cols=100 Identities=10% Similarity=0.028 Sum_probs=72.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----c---c-------hh-hccc-cccCCC--
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----I---G-------TY-QNWC-EAMSTY-- 536 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i---~-------~~-~~~c-e~~~~y-- 536 (636)
.....|||+|||.|-.+.+|++++. .|+.+|.+++++..+.+|.= . + .. .-.+ ..+...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 3477999999999999999999986 56777888899999988631 0 0 00 0111 122222
Q ss_pred C-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 537 P-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 537 p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+ ..||+|.+.++|..... -+...++-+|-|+|+|||.+++.
T Consensus 96 ~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 2 68999998777764332 34578999999999999998885
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.43 E-value=1.1e-07 Score=94.47 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=87.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhcccc-ccCCCC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCE-AMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce-~~~~yp-~t~Dl~H~~~~fs 550 (636)
..+|||+|||+|.++.++++.+. .|+.+|.++.++..+.+ .|+-..+. +. .....| .+||+|.|+-++.
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~--~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFL--EGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEE--ESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEE--eccccccccccccchhhhccccc
Confidence 46899999999999999988764 46677888788888775 34411111 11 122344 7899999854332
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.+..++-++-|+|||||++|+++- .+....|.+.++...|+......+ +.-..|+.+|
T Consensus 196 ------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~----~~Wv~l~~~r 254 (254)
T d2nxca1 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred ------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEE----CCEEEEEEeC
Confidence 256788899999999999999863 335567788888888877554333 1234555554
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.42 E-value=7.8e-08 Score=94.82 Aligned_cols=103 Identities=22% Similarity=0.340 Sum_probs=69.8
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHH----HHhhcccchhhccc-cccCCCCCcccee
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGV----IYERGLIGTYQNWC-EAMSTYPRTYDLI 543 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~----~~eRgli~~~~~~c-e~~~~yp~t~Dl~ 543 (636)
+.. ...++|||+|||.|.++.+|+++ .+-+. -.|.+ .++.. +.+.|+..-+.--. ..|...|..||+|
T Consensus 76 ~d~-~~~~~VLDvGcG~G~~~~~la~~~p~~~~~---~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v 150 (253)
T d1tw3a2 76 YDW-TNVRHVLDVGGGKGGFAAAIARRAPHVSAT---VLEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI 150 (253)
T ss_dssp SCC-TTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECT-THHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEE
T ss_pred cCC-ccCCEEEEeCCCCCHHHHHHHHhcceeEEE---EccCH-HHHHHHHHHHHHhhcccchhhccccchhhcccchhhe
Confidence 444 66899999999999999999865 33222 12222 34443 44556633222111 2355667889999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+..++-.+.+. +...+|-++-|+|||||.++|.|
T Consensus 151 ~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 151 ILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 998887665432 34578999999999999999975
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=9.6e-08 Score=95.03 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=73.5
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhh-----cccchhhcccc-c----
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYER-----GLIGTYQNWCE-A---- 532 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eR-----gli~~~~~~ce-~---- 532 (636)
+..+.....--+|||+|||.|.+...|++. +-....++.+|.+..++..+.+| .+-.+--+|.. .
T Consensus 32 l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (280)
T d1jqea_ 32 IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEY 111 (280)
T ss_dssp TTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHH
T ss_pred HHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhh
Confidence 333444233347999999999998777542 11234567778887899888776 12111112221 1
Q ss_pred ----cCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 533 ----MSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 533 ----~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
....+ .+||+|+|.++|.... +++..|-+|.|+|+|||+++|.
T Consensus 112 ~~~~~~~~~~~~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 112 QSRMLEKKELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp HHHHTTSSSCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred cchhcccCCCCceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEE
Confidence 23344 8999999988877544 5789999999999999999886
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.40 E-value=4.7e-07 Score=86.59 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=56.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+++|||+|||+|.++..++.++. .++++ |+++.+++.|+++...+.+...|...++ +.||+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~v---Did~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAF---DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEE---ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCccccc---ccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 45999999999999988888864 46666 8899999999998888899999887764 679999998644
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.39 E-value=4e-07 Score=89.74 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=75.3
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~s 282 (636)
.+.+.+.++.- ...++|||||||+|.++..++++ +..++-+ |+.+ .++.+ .....+.+..+|..+ +.| .
T Consensus 69 ~~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~---Dlp~-vi~~~-~~~~ri~~~~gd~~~-~~p--~ 139 (244)
T d1fp1d2 69 MKRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYPLIKGINF---DLPQ-VIENA-PPLSGIEHVGGDMFA-SVP--Q 139 (244)
T ss_dssp HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHH-HHTTC-CCCTTEEEEECCTTT-CCC--C
T ss_pred HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEe---cchh-hhhcc-CCCCCeEEecCCccc-ccc--c
Confidence 34455544421 23469999999999999999988 5565555 5542 22221 112347777777643 444 4
Q ss_pred eeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
.|++++.++||+|.++. ..+|+++++.|+|||.++|..
T Consensus 140 ~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 140 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 59999999999987554 689999999999999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.1e-07 Score=92.35 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh--cccchh--------------------------
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGTY-------------------------- 526 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gli~~~-------------------------- 526 (636)
...++|||+|||.|.+...++.+. +.+|+.+|-++++++.+..+ .-.+.+
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 457799999999998877666663 35888899999999988643 111111
Q ss_pred ---------hcccc--ccC---CCCCccceeeeccccccC-CCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------
Q 006662 527 ---------QNWCE--AMS---TYPRTYDLIHADSIFSLY-KDRCEMEDVLLEMDRILRPEGSVIIRDDVD--------- 582 (636)
Q Consensus 527 ---------~~~ce--~~~---~yp~t~Dl~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~--------- 582 (636)
.|..+ .+. ..+..||+|-+..+++.- .++.++..+|-++-|+|||||++|+.+...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 01111 111 123689998875555432 345578899999999999999999974211
Q ss_pred -------HHHHHHHHHhcCCCceE
Q 006662 583 -------ILVKIKSITDGMEWEGR 599 (636)
Q Consensus 583 -------~~~~~~~~~~~~~W~~~ 599 (636)
..+.|+++++.---++.
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEE
Confidence 33667777666655543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.36 E-value=1.1e-06 Score=89.82 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~ 274 (636)
......+.+++ .++. +|||+|||+|.++..++..+. .++++ |+++.+++.++++ +. .+.+..+|..
T Consensus 133 r~~r~~~~~~~--~~g~--~VLDl~~g~G~~si~~a~~ga~~V~~v---D~s~~al~~a~~N~~~ngl~~~~~~~~~d~~ 205 (324)
T d2as0a2 133 RENRLALEKWV--QPGD--RVLDVFTYTGGFAIHAAIAGADEVIGI---DKSPRAIETAKENAKLNGVEDRMKFIVGSAF 205 (324)
T ss_dssp HHHHHHHGGGC--CTTC--EEEETTCTTTHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred hhHHHHHHhhc--CCCC--eeecccCcccchhhhhhhcCCcEEEee---cCCHHHHHHHHHHHHHcCCCccceeeechhh
Confidence 33334444433 3444 999999999999999998864 56677 8899999888654 44 3677777754
Q ss_pred c----CCCCCCCeeEEEecccccccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 R----LPYPSRAFDMAHCSRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~----Lpf~~~sFDlV~~s~~L~h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
. ++....+||+|++..-...-... -..++..+.++|+|||.|+++..
T Consensus 206 ~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 206 EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred hhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 23456789999985422111111 13478888999999999999865
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=4e-07 Score=93.17 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=72.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc----CCCCCCCeeEEEec
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR----LPYPSRAFDMAHCS 289 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~----Lpf~~~sFDlV~~s 289 (636)
+.+|||++||+|.++.+++..+..++++ |+++.+++.|+++ +. ++.+...|... ++...++||+|++.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~v---D~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAV---DSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEE---ESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEee---cchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 3499999999999999998765556666 8899999888644 44 57788777644 33456789999985
Q ss_pred ccccccc-c-------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWG-Q-------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~-~-------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.--.... . +...++..+.++|||||.|+++..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3211111 1 113578889999999999999864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.27 E-value=6.2e-07 Score=81.76 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CCCCCCCeeEEEecc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LPYPSRAFDMAHCSR 290 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lpf~~~sFDlV~~s~ 290 (636)
+.+|||+|||+|.++...+.+|. .++.+ |.+..+++.++++ +. .+.+...|... ++...++||+|++..
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~v---e~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLV---EKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEE---CCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeee---hhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 34999999999999999998875 45555 8888888776644 32 36777777654 345578899999864
Q ss_pred cccccccCh-HHHHHHH--HhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYD-GLYLIEV--DRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~-~~~L~el--~RvLKPGG~Liis~p 321 (636)
- +.... ...+..+ .++|+|||.+++..+
T Consensus 92 P---y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 P---YAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp S---SHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h---hccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 22122 4555555 367999999999754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.24 E-value=6.2e-07 Score=86.04 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=80.2
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHH----hhcc--cchhhccccccC-CCC-Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQNWCEAMS-TYP-RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl--i~~~~~~ce~~~-~yp-~t~Dl~H~~~~ 548 (636)
..|||+|||.|.+..+|++. |= .|++.+|.+.+.+..+. +.|+ +-+++.=.+.+. .+| .++|.||+ .
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~--~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i--~ 108 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL--N 108 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE--E
T ss_pred CeEEEEeccCCHHHHHHHHHCCC--CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc--c
Confidence 47999999999999999764 22 36677777666666554 4565 344442122233 346 89999987 3
Q ss_pred ccc-------CCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCCceE
Q 006662 549 FSL-------YKDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 549 fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
|.. .+.|=--+.+|-++.|+|+|||.++| ||..++.+.+.+......|...
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 331 12232236899999999999999988 7888887777777666666544
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=3.8e-07 Score=87.61 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=76.5
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHH----Hhhcc--cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGL--IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..|||+|||.|.+...|++. |= .|++.+|.+.+.+..+ .++|+ +-+++ |-..-...+| .++|.+++...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 47999999999999999764 22 3667777776766554 45566 22232 2111112355 89998887444
Q ss_pred cccCCC----CcC-HHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCC
Q 006662 549 FSLYKD----RCE-MEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGME 595 (636)
Q Consensus 549 fs~~~~----~c~-~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~~ 595 (636)
.-..+. +.. -+.+|-++.|+|+|||.++| ||..++.+.+.+......
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 332221 222 26899999999999999987 588888888877765433
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=6.1e-07 Score=86.72 Aligned_cols=122 Identities=10% Similarity=-0.030 Sum_probs=83.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhccc-c-------------------hhhcccccc---
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-G-------------------TYQNWCEAM--- 533 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli-~-------------------~~~~~ce~~--- 533 (636)
...|||+|||.|-.+.+|++++. +|+.+|.++..+..+.++--. + .+.-.|..+
T Consensus 46 ~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 46 GLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 56899999999999999999986 678889998888777665210 0 001112222
Q ss_pred -CCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----H--------HHHHHHHHHhcCCCceEE
Q 006662 534 -STYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----D--------ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 534 -~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~--------~~~~~~~~~~~~~W~~~~ 600 (636)
...+.+||+|...++|-... .-+.+.++.+|-|+|||||++++.... . .-..+++++.. .|++..
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred cccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence 22347899999877776543 235689999999999999998775210 0 23567777766 477765
Q ss_pred ecc
Q 006662 601 ADH 603 (636)
Q Consensus 601 ~~~ 603 (636)
.++
T Consensus 201 le~ 203 (229)
T d2bzga1 201 LEK 203 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.21 E-value=2.7e-07 Score=91.30 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=69.6
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC--C--eEEEEecCCCCCccchH----HHHhhcccchhhccc-cccCCCCCccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD--P--LWVMNTVPVEAKINTLG----VIYERGLIGTYQNWC-EAMSTYPRTYD 541 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~----~~~eRgli~~~~~~c-e~~~~yp~t~D 541 (636)
+.. ...++|||+|||.|.++.+|+++ . +.++ |.+ .++. .+.+.|+-.-..-.. ..|.+.|..||
T Consensus 77 ~d~-~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~-----Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D 149 (256)
T d1qzza2 77 YDW-SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV-----ELA-GPAERARRRFADAGLADRVTVAEGDFFKPLPVTAD 149 (256)
T ss_dssp SCC-TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE-----ECH-HHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEE
T ss_pred CCC-ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEe-----cCh-HHHHHHHHHHhhcCCcceeeeeeeeccccccccch
Confidence 444 56889999999999999999875 2 3333 332 3443 344556633221111 34555678899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
++.+..+|-.+.+ -+...+|-++-|+|||||.++|.|.
T Consensus 150 ~v~~~~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 150 VVLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhccccccccCc-HHHHHHHHHHHhhcCCcceeEEEEe
Confidence 9998888765532 2345789999999999999999864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.19 E-value=2e-05 Score=74.88 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=54.1
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+.+|||+|||+|.++..++.++. .++++ |+++.+++.++++ +....+...|...+ .+.||+|+++.-+
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~v---di~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAKEVICV---EVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCEEEECcCcchHHHHHHHHcCCCEEEEE---cCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 34999999999999999888874 56666 8899999988765 45677777776654 4579999998755
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1e-06 Score=89.12 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=67.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccc---hHHHHhhcccc---hhhccccccCCCCCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINT---LGVIYERGLIG---TYQNWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~---l~~~~eRgli~---~~~~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
..+|||+|||+|.++..+++.+- -.|..+|.++.+ ...+.+.|+.. +.+.-.+.+..-+..||+|-+..+++
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 56899999999999888887643 123333444333 34556666633 33322223322238999999877777
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.....-.++.++..++|+|||||.+|-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 666666678999999999999999985
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=2.7e-06 Score=80.73 Aligned_cols=113 Identities=11% Similarity=0.122 Sum_probs=81.9
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP 277 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp 277 (636)
+.+.+.+++...++. .+||++||+|.++..++++ +..++++ |.++.+++.|+++ +..+.+...+...+.
T Consensus 11 ll~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~---D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 11 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGI---DVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 85 (192)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEe---echHHHHHHHHHhhccccccccchhHHHhhHH
Confidence 344556666656665 9999999999999999987 5666777 9999999999876 335777777655432
Q ss_pred -----CCCCCeeEEEeccccc--cc------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -----YPSRAFDMAHCSRCLI--PW------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -----f~~~sFDlV~~s~~L~--h~------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+..++||.|+.-..+. ++ .......|..+.++|+|||.+++...
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 4467899998643331 11 11224788999999999999998864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.13 E-value=1e-06 Score=84.66 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=83.7
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
...-+|||+|||.|++..+|++. +- -|..+|.++.++..+.+ |+.+.....=++....|+..+|.+- -+
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd--~v 129 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD--LI 129 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE--EE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE--EE
Confidence 34779999999999999998763 11 24556666677766544 3444444322233344555555433 24
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------HHHHHHHHHH-HhcCCCceEEeccCCCCCCcceEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------VDILVKIKSI-TDGMEWEGRIADHENGPRQREKILFAN 617 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~-~~~~~W~~~~~~~e~~~~~~~~~l~~~ 617 (636)
|....+.-+...+|.|+.|+|||||++++.+. ..+...+.+. ..++... ...+.+ |+.++-++|.-
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~-E~i~L~--P~~~~H~~v~~ 206 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIV-KHGSLM--PYHRDHIFIHA 206 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEE-EEEECT--TTCTTEEEEEE
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEE-EEEccC--CCccCcEEEEE
Confidence 54443445667899999999999999999742 2233333333 2333221 123333 66678888877
Q ss_pred ecC
Q 006662 618 KKY 620 (636)
Q Consensus 618 K~~ 620 (636)
+.|
T Consensus 207 ~r~ 209 (209)
T d1nt2a_ 207 YRF 209 (209)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.09 E-value=2.6e-06 Score=79.72 Aligned_cols=117 Identities=13% Similarity=0.199 Sum_probs=80.7
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhccccccCCCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~~~yp~t~Dl~H~~~ 547 (636)
.....|||+|||+|.++.+|+...- .|+.+|.+++++..+.++ |+ +-+++.-.+....=...||+|=+++
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 4577899999999999999987632 455667777888888764 44 2233311111111127899887643
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~ 600 (636)
. .-.++.++-++-+.|||||++++... .+....+.+.++...|+..+
T Consensus 109 ~------~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~ 156 (186)
T d1l3ia_ 109 S------GGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (186)
T ss_dssp C------TTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred c------cccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEE
Confidence 2 23468999999999999999999863 45666677777777776543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.09 E-value=3.4e-06 Score=86.07 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=69.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC----CCCCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL----PYPSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L----pf~~~sFDlV~ 287 (636)
++|||+.||+|.++..++..+. .++.+ |+++.+++.++++ +. .+.+...|.... .-..+.||+|+
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 3999999999999999888764 45566 7777777766543 33 467888776432 22456899999
Q ss_pred ecccc--------cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 288 CSRCL--------IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 288 ~s~~L--------~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+---- .....+...++..+.++|+|||.|+++..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 84211 01111224688889999999999999865
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=3.2e-06 Score=86.23 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=66.0
Q ss_pred cceEeeecccchhhhhhhcCCCe-EEEEecCCCCCc---cchHHHHhhcccchhhccccccC--CCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKI---NTLGVIYERGLIGTYQNWCEAMS--TYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~---~~l~~~~eRgli~~~~~~ce~~~--~yp-~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.++..+++.+- -| ...|.++ .....+.+.|+.....-.+.... .+| ..||+|-+.-++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V---~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHV---IGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEE---EEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 46899999999999888877642 22 2223331 23445566677432222222222 244 899999987777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVI 576 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i 576 (636)
......-.++.++.+++|+|+|||.+|
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 766666788999999999999999986
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.06 E-value=1.8e-06 Score=87.68 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=66.0
Q ss_pred cceEeeecccchhhhhhhcCCC---eEEEEecCCCCCccchHHHHhhcccchhhccc---cccCCCCCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDP---LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC---EAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~---v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~c---e~~~~yp~t~Dl~H~~~~fs 550 (636)
..+|||+|||+|.++-.+++.+ |+.+-..+. .......+...|+...+.-.+ +.+..-+..||+|-+.-+..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~--~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI--SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH--HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4689999999999887777654 433332221 112334455567744332222 22222338999998876666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.......++.++-+++|+|+|||.+|-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 666667889999999999999999974
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.05 E-value=2.1e-06 Score=83.75 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=81.0
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc-hhhccccccCCC-CCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG-TYQNWCEAMSTY-PRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~-~~~~~ce~~~~y-p~t~Dl~H~~~~ 548 (636)
...-+|||+|||.|.++.+|++.. ---.|..+|.++.++..+.++ +.+- +..|.. ....| +.++|.+-+
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~-~~~~~~~~~~~v~~i--- 147 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN-KPQEYANIVEKVDVI--- 147 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT-CGGGGTTTCCCEEEE---
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec-cCcccccccceeEEe---
Confidence 458899999999999999998641 001234445554566655553 4433 333433 33334 366665443
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------HHHHHHHHHHHhcCCCceE-EeccCCCCCCcceEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------VDILVKIKSITDGMEWEGR-IADHENGPRQREKILFA 616 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~~~~~~W~~~-~~~~e~~~~~~~~~l~~ 616 (636)
|.......+.+.++.|+.|+|||||+++|.+. ......+.+.++.-..+.. ..|. .|..++-+||.
T Consensus 148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL--~py~~~H~~vv 224 (230)
T d1g8sa_ 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI--EPFEKDHVMFV 224 (230)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC--TTTSTTEEEEE
T ss_pred eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC--CCCcCCeEEEE
Confidence 33333445678899999999999999999732 2344555555555445443 2233 35556665554
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.01 E-value=4.4e-06 Score=82.05 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
..+|||||||+|.++..++++ +..++-+ |+. ..++.+. ....+.+..+|... +.+ .+|++++.++||+|.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dlp-~vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVF---DRP-QVVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECH-HHHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEe---cCH-HHHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEeecccCC
Confidence 358999999999999999988 5555555 554 2333221 12357888777654 333 579999999999997
Q ss_pred cCh-HHHHHHHHhcccCC---cEEEEEe
Q 006662 297 QYD-GLYLIEVDRVLRPG---GYWILSG 320 (636)
Q Consensus 297 ~d~-~~~L~el~RvLKPG---G~Liis~ 320 (636)
++. ..+|+++++.|+|| |.+++..
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 555 68999999999998 7777765
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=2.5e-05 Score=77.74 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCCCCCccc-HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC-
Q 006662 192 GGGTMFPRG-ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV- 264 (636)
Q Consensus 192 ggg~~f~~g-~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~- 264 (636)
+.+.+.|.. ++..++.+.+.+.... ..++||+|||+|..+..+++. +..++.+ |+++.+++.|+++ +.
T Consensus 85 ~~~vlIPRpeTE~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~~~~v~a~---Dis~~Al~~A~~Na~~~~~~ 159 (271)
T d1nv8a_ 85 EEGVFVPRPETEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFAT---DVSSKAVEIARKNAERHGVS 159 (271)
T ss_dssp CTTSCCCCTTHHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEE---ESCHHHHHHHHHHHHHTTCT
T ss_pred ecCccCchhhhhhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcccceeeec---hhhhhHHHHHHHHHHHcCCC
Confidence 344555554 4555565555554333 348999999999998888765 4556666 8999999988754 33
Q ss_pred -CeEEEEecccc-CCCCCCCeeEEEecccccccc--------cCh-----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 265 -PALIGVMASIR-LPYPSRAFDMAHCSRCLIPWG--------QYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 265 -~~~~~~~d~~~-Lpf~~~sFDlV~~s~~L~h~~--------~d~-----------~~~L~el~RvLKPGG~Liis~p 321 (636)
...+...+... ++...+.||+|+|+--.+.-. -+| ..+-+-+.+.|+|||++++...
T Consensus 160 ~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 160 DRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp TSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 24444444332 222346899999975432111 011 1122235688999999999854
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.99 E-value=7.3e-06 Score=83.23 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=75.5
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC--
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL-- 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L-- 276 (636)
+.+.+++.. ...+.+|||+.||+|.++.+++..+..++.+ |.++.+++.|+++ +. .+.+.+.|+...
T Consensus 121 ~~~~~~~~~-~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~V---D~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~ 196 (309)
T d2igta1 121 EWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHV---DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ 196 (309)
T ss_dssp HHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH
T ss_pred HHHHHHHhh-ccCCCeEEEecCCCcHHHHHHHhCCCeEEEE---eChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHH
Confidence 344444432 1223499999999999999999999888888 9999999988754 33 467887776432
Q ss_pred --CCCCCCeeEEEeccc---c----ccc--ccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 --PYPSRAFDMAHCSRC---L----IPW--GQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 --pf~~~sFDlV~~s~~---L----~h~--~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
....+.||+|++.-- . ..+ ..+...++..+.++|+|||.+++..
T Consensus 197 ~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 197 REERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 123578999998321 1 011 1112456677889999999766653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=2.8e-05 Score=72.71 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er 262 (636)
|.....|.+... +...+...+.+..++.. ..+. +|||++||+|.++.+.+.+|. .++.+ |.+..+++.++++
T Consensus 12 g~~l~~~~~~~~-RPt~~~vre~lfn~l~~~~~~~--~vLDlfaGsG~~giealsrGa~~v~~V---E~~~~a~~~~k~N 85 (183)
T d2fpoa1 12 GRKLPVPDSPGL-RPTTDRVRETLFNWLAPVIVDA--QCLDCFAGSGALGLEALSRYAAGATLI---EMDRAVSQQLIKN 85 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHH
T ss_pred CCEecCCCCCCc-CcCcHHHHHHHHhhhhcccchh--hhhhhhccccceeeeEEecCcceeEEE---EEeechhhHHHHH
Confidence 344555544322 22334444555555532 2344 899999999999999999976 45555 8888888877643
Q ss_pred ----CC-CeEEEEecccc-CCCCCCCeeEEEecccccccccC-hHHHHHHHHh--cccCCcEEEEEeC
Q 006662 263 ----GV-PALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDR--VLRPGGYWILSGP 321 (636)
Q Consensus 263 ----g~-~~~~~~~d~~~-Lpf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~R--vLKPGG~Liis~p 321 (636)
+. +..+...|+.. +......||+|++..- +..+ ....+..+.+ +|+++|.+++..+
T Consensus 86 ~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP---Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 86 LATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP---FRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp HHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS---SSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HhhccccceeeeeecccccccccccccCEEEEcCc---cccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 22 45666666443 3345678999999763 3322 2566666654 6999999999743
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.95 E-value=6.8e-06 Score=79.08 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=66.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-----CCCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-----YPSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-----f~~~sFD 284 (636)
++|||||||+|..+..|++. +..++++ |.++.+.+.|+++ +. .+.+..++.... + +..+.||
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~si---d~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTM---EMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEE---eccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 48999999999999999875 5566677 7777777777532 43 377777775442 2 4557899
Q ss_pred EEEecccccccccCh--HHHHHHHHhcccCCcEEEEE
Q 006662 285 MAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 285 lV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis 319 (636)
+|+.-. +.... ...+.+..++|||||++++.
T Consensus 135 ~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 135 MVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeeecc----cccccccHHHHHHHhCccCCCcEEEEe
Confidence 998753 22221 34577888999999987765
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.93 E-value=8.5e-06 Score=79.72 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=67.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
.++|||||||+|.++..++++ +..++.+ |+.. .++.+ .....+.+...|... +.|. .|+++...+++.|.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dlp~-vi~~~-~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~ 153 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINF---DLPH-VIEDA-PSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWS 153 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEE---ECTT-TTTTC-CCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSC
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEc---ccHH-hhhhc-ccCCceEEecccccc-cCCC--cceEEEEEEeecCC
Confidence 468999999999999999998 4555544 3322 12222 122356777777533 4453 46677888998887
Q ss_pred cCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++. ..+|+++++.|+|||.+++...
T Consensus 154 d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 154 DEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp HHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 444 7899999999999999999753
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=1e-05 Score=78.67 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=80.1
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcCC----C-eEEEEecCCCCCccchHHHHh----hcccc-hhhccc--cccCC
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIYE----RGLIG-TYQNWC--EAMST 535 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~e----Rgli~-~~~~~c--e~~~~ 535 (636)
+..|.- ...-+|||+|||.|+++.+|++. + |+.+ |.++.++..+.+ ++.+- +..|-. +.+..
T Consensus 66 l~~l~i-~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aV-----D~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~ 139 (227)
T d1g8aa_ 66 LKNFPI-KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI-----EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRA 139 (227)
T ss_dssp CCCCCC-CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE-----ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTT
T ss_pred cccccc-CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEE-----eCcHHHHHHHHHHHHhcCCceEEEEECCCcccccc
Confidence 333444 55889999999999999999863 2 4554 444455554443 44332 222221 11222
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCCceE-EeccC
Q 006662 536 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEGR-IADHE 604 (636)
Q Consensus 536 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~~-~~~~e 604 (636)
.+..+|.|+++ ....-....++.++.|+|+|||+++|.. ...+...++++.+. .++.. ..+.+
T Consensus 140 ~~~~vD~i~~d-----~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~ 213 (227)
T d1g8aa_ 140 LVPKVDVIFED-----VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE 213 (227)
T ss_dssp TCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT
T ss_pred cccceEEEEEE-----ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 22567777652 1112234678999999999999999962 23455666666544 44443 33333
Q ss_pred CCCCCcc-eEEEEEec
Q 006662 605 NGPRQRE-KILFANKK 619 (636)
Q Consensus 605 ~~~~~~~-~~l~~~K~ 619 (636)
|..++ .++|++|+
T Consensus 214 --p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 214 --PYEKDHALFVVRKT 227 (227)
T ss_dssp --TTSSSEEEEEEECC
T ss_pred --CCCCceEEEEEEeC
Confidence 33333 56677774
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=6.4e-05 Score=72.41 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CC-----CCCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LP-----YPSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lp-----f~~~sFD 284 (636)
++|||||||+|.-+.++++. +..++.+ |.++...+.|++. +. .+.+..+++.. ++ ...++||
T Consensus 61 k~vLEiGt~~GyStl~~a~al~~~g~i~ti---e~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 61 KKALDLGTFTGYSALALALALPADGRVVTC---EVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CeEEEEechhhHHHHHHHHhCCCCceEEEE---eechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 38999999999999999875 4466666 5566666666533 32 36777776433 21 2457899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+... ....-..++..+.++|+|||.+++..
T Consensus 138 ~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 138 VAVVDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 999743 33344678899999999999999974
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.88 E-value=2.9e-05 Score=72.62 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=83.9
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHc
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~er 262 (636)
|....+|.+... ....+...+.+..+|.. ..+ .+|||++||+|.++...+.+|.. ++.+ |.+..+++.++++
T Consensus 10 g~~l~~~~~~~~-RPt~~~vrealFn~l~~~~~~--~~vLDlfaGsG~~g~ea~srGa~~v~~v---e~~~~a~~~~~~N 83 (182)
T d2fhpa1 10 GRRLKALDGDNT-RPTTDKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMDKSICI---EKNFAALKVIKEN 83 (182)
T ss_dssp TCBCCCCCCCSS-CCCCHHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHH
T ss_pred CCEecCCCCCCc-CcCcHHHHHHHHHHHHHhcCC--CEEEEcccccccccceeeecchhHHHHH---HHHHHHHHHHHHH
Confidence 334445444332 33334455667677642 234 49999999999999999999763 5555 8888888877654
Q ss_pred ----CC--CeEEEEeccccC----CCCCCCeeEEEeccccccccc-ChHHHHHHHH--hcccCCcEEEEEeC
Q 006662 263 ----GV--PALIGVMASIRL----PYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 263 ----g~--~~~~~~~d~~~L----pf~~~sFDlV~~s~~L~h~~~-d~~~~L~el~--RvLKPGG~Liis~p 321 (636)
+. ...+...|+.+. .-....||+|++-.- +.. +....+..+. .+|+++|++++..+
T Consensus 84 ~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPP---Y~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 84 IAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP---YAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC---GGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhhhcccccccccccchhhhhhhcccCCCcceEEechh---hhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22 467777775432 123567999998652 322 3366777775 47999999998753
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=9.1e-05 Score=72.62 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=63.5
Q ss_pred CCCCcc--cHHHHHHHHHHhhcc---CCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----
Q 006662 194 GTMFPR--GADAYIDDIGKLINL---KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---- 262 (636)
Q Consensus 194 g~~f~~--g~~~~id~L~~lL~l---~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er---- 262 (636)
+...|. ....++..+.+++.. ......++||+|||+|..+..|+.+ +..++++ |+++.+++.|+++
T Consensus 32 ~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~---Di~~~al~~A~~N~~~n 108 (250)
T d2h00a1 32 ERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLAT---EVDDMCFNYAKKNVEQN 108 (250)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEE---ESCHHHHHHHHHHHHHT
T ss_pred CeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccce---ecCHHHHHHHHHHHHHh
Confidence 444553 234455666666532 2233458999999999999999887 6777777 9999999998755
Q ss_pred CCC--eEEEEeccccC------CCCCCCeeEEEeccccc
Q 006662 263 GVP--ALIGVMASIRL------PYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 263 g~~--~~~~~~d~~~L------pf~~~sFDlV~~s~~L~ 293 (636)
+.. +.+...+.... ...++.||+|+|+--++
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 109 NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred CCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCccc
Confidence 332 44443332221 12356899999987664
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.83 E-value=2.6e-05 Score=79.04 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=69.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
..+|||.|||+|.++..+.++ ......+.+.|+++.+++.|+.+ +....+...+.... .+...||+|+++.
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~NP 196 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISDL 196 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccCC
Confidence 348999999999999888643 22222333448888888777533 45556665554332 3457899999987
Q ss_pred cccccccC-----------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQY-----------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d-----------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
-+...... ...++..+.+.|+|||++++..|
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 55221111 02468899999999999999877
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.82 E-value=2.7e-06 Score=81.75 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=56.9
Q ss_pred CCcceEeeecccchhhhhhhcCC---C--eEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCC--Ccccee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---P--LWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP--RTYDLI 543 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~--v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp--~t~Dl~ 543 (636)
+...+|||+|||+|.+++.|++. . |+. +|..+.++..+.++ |+-.+..........+| ..||.|
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~-----id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I 148 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVS-----VEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVI 148 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEE-----EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEE-----eecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhh
Confidence 44779999999999999888642 2 333 34444556555543 33111112223445555 789999
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++.+.+... .-++-|.|||||.+|+-
T Consensus 149 ~~~~~~~~~---------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 149 FVTVGVDEV---------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp EECSBBSCC---------CHHHHHHEEEEEEEEEE
T ss_pred hhhccHHHh---------HHHHHHhcCCCcEEEEE
Confidence 997665422 23456789999999984
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.68 E-value=6.4e-05 Score=73.19 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
+..++.+.+.+...+++ +|||||||+|.++..|++.+..++.+ ++++.+++..+++. .++.+..+|+...++
T Consensus 7 ~~i~~~iv~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~~v~av---E~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTAI---EIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCchHHHHHHHhCcCceEEE---eeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence 34667788877766666 99999999999999999997777777 88888888887664 458899999988887
Q ss_pred CCCCeeEEEecc
Q 006662 279 PSRAFDMAHCSR 290 (636)
Q Consensus 279 ~~~sFDlV~~s~ 290 (636)
+......|+++.
T Consensus 82 ~~~~~~~vv~NL 93 (235)
T d1qama_ 82 PKNQSYKIFGNI 93 (235)
T ss_dssp CSSCCCEEEEEC
T ss_pred cccccceeeeee
Confidence 765545566654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.67 E-value=3.9e-05 Score=72.38 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf 278 (636)
....+.+.+++....+. +|||.|||+|.|+..+.++ .....++ |+++..+..+ ....+...+.....
T Consensus 5 ~~i~~~m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~---ei~~~~~~~~----~~~~~~~~~~~~~~- 74 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGV---EIDPKALDLP----PWAEGILADFLLWE- 74 (223)
T ss_dssp HHHHHHHHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEE---ESCTTTCCCC----TTEEEEESCGGGCC-
T ss_pred HHHHHHHHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccceEEee---ecCHHHHhhc----ccceeeeeehhccc-
Confidence 34566777877665555 9999999999999888765 2223333 4443332222 23455555554433
Q ss_pred CCCCeeEEEeccccccccc---------------------------Ch-HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQ---------------------------YD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~---------------------------d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
....||+|+++.-+..... +. ..++..+.+.|+|||++++..|
T Consensus 75 ~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 75 PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 4578999999765422110 01 2567788999999999999987
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.65 E-value=1.4e-05 Score=78.69 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=69.6
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCCCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
..+|||+|||.|+++.+|+.. .-- |...|.++.+++.+.++ +. +...+ |.++.+ ....||.|.+
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~--~~~~fD~V~l 160 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI--SDQMYDAVIA 160 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--CSCCEEEEEE
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc--ccceeeeeee
Confidence 678999999999999888752 211 23335566788887764 33 22333 555432 2388998876
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCC
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEW 596 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W 596 (636)
+ --+...+|-++.|+|||||.+++.-. .+++.++-+.++.-.|
T Consensus 161 d--------~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 161 D--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM 204 (250)
T ss_dssp C--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred c--------CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence 2 22345789999999999999998754 3444555444444444
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.63 E-value=8e-05 Score=74.16 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---------------CCCeEEEEeccccCCCCCC
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---------------GVPALIGVMASIRLPYPSR 281 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---------------g~~~~~~~~d~~~Lpf~~~ 281 (636)
..+++||.||+|.|..+..+++.... .++..++++..++.|++- ...+.+...|....--.++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 34569999999999999999887532 222337788888888642 2346777777543211357
Q ss_pred CeeEEEecccccccccCh----HHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~ 320 (636)
+||+|++-. ..+..... ..+++.+.+.|+|||.+++..
T Consensus 149 ~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 899999732 22322111 579999999999999999864
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.45 E-value=2.9e-05 Score=76.19 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=66.9
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPS 280 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~ 280 (636)
.++.+.+.+...+++ +|||||||+|.++..|++.+..++.+ ++++.+++.++++. .++.+..+|...++++.
T Consensus 17 ii~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~~v~aI---E~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 17 VLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTSI---ELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEES---SSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcCceeEe---eecccchhhhhhhhhhccchhhhhhhhhcccccc
Confidence 456777777666655 89999999999999999998777777 66766666665543 35788888998888888
Q ss_pred CCeeEEEecccccccc
Q 006662 281 RAFDMAHCSRCLIPWG 296 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~ 296 (636)
..++.|+++.-. +..
T Consensus 92 ~~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 92 KQRYKIVGNIPY-HLS 106 (245)
T ss_dssp SSEEEEEEECCS-SSC
T ss_pred ceeeeEeeeeeh-hhh
Confidence 888888887654 444
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=4.2e-05 Score=75.86 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=73.6
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cccchhh-ccccccCCCC-Cccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-NWCEAMSTYP-RTYD 541 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~-~~ce~~~~yp-~t~D 541 (636)
|.+ ..+|||+|||.|+++.+|+.. .- .|...|.++.+++.+.++ |+...+. ........++ ..||
T Consensus 101 i~p---G~~VLDiG~GsG~lt~~lA~~~~~~G---~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D 174 (266)
T d1o54a_ 101 VKE---GDRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVD 174 (266)
T ss_dssp CCT---TCEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEE
T ss_pred CCC---CCEEEECCCCCCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccccee
Confidence 555 779999999999999988742 21 233445555677776443 4433221 1111123344 6788
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCc
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWE 597 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~ 597 (636)
.+.. +-.+...+|-++.|+|||||.+++-- ..+.+.++.+.++...|.
T Consensus 175 ~V~~--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 175 ALFL--------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEEE--------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred eeEe--------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 6554 34677889999999999999998754 456666666666666674
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.40 E-value=0.00064 Score=63.38 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=79.3
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-CCeEEEEeccccCC-----C
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP-----Y 278 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-~~~~~~~~d~~~Lp-----f 278 (636)
++.+.+.+...++. .++|..+|.|.++..+++++..++++ |..+.+++.+.+.. ..+.+.......+. +
T Consensus 7 l~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viai---D~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 7 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGL---DQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEE---hhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 34455666556665 89999999999999999998788888 88889998887653 24566655544332 3
Q ss_pred CCCCeeEEEecccccccc-cCh-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWG-QYD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~-~d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
..+.+|.|+.-..+..+. +++ ...|.....+|+|||.+++...
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 346799999744331211 111 3468888999999999999864
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.37 E-value=0.00078 Score=62.46 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=71.8
Q ss_pred HHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEecc
Q 006662 203 AYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMAS 273 (636)
Q Consensus 203 ~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~ 273 (636)
...+.+...+.. ..+. +|||+-||+|.++.+.+.+|. .++-+ |.+...++..+++ +. ...+...+.
T Consensus 29 ~vrealFn~l~~~~~~~--~vLDlFaGsG~~glEalSRGA~~v~fV---E~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~ 103 (183)
T d2ifta1 29 RVKETLFNWLMPYIHQS--ECLDGFAGSGSLGFEALSRQAKKVTFL---ELDKTVANQLKKNLQTLKCSSEQAEVINQSS 103 (183)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHHHHTTCCTTTEEEECSCH
T ss_pred HHHHHHHHHhhhhcccc--eEeecccCccceeeeeeeecceeeEEe---ecccchhhhHhhHHhhhcccccccccccccc
Confidence 334445555532 2444 899999999999999999987 44444 7787777766543 22 234444332
Q ss_pred c---cCCCCCCCeeEEEecccccccccCh-HHHHHHHH--hcccCCcEEEEEeC
Q 006662 274 I---RLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~---~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~--RvLKPGG~Liis~p 321 (636)
. ........||+|++-. ++..+. ...+..+. .+|+++|++++..+
T Consensus 104 ~~~l~~~~~~~~fDlIFlDP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 104 LDFLKQPQNQPHFDVVFLDP---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHHTTSCCSSCCEEEEEECC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccccccccCCcccEEEech---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 2 2233455799999866 333333 56677665 47999999999754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.36 E-value=0.00045 Score=66.67 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=65.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH----cCC--CeEEEEecccc-CC------CCCCCe
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIR-LP------YPSRAF 283 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e----rg~--~~~~~~~d~~~-Lp------f~~~sF 283 (636)
++|||||+++|.-+.+|++. +..++.+ |.++...+.|++ .|. .+.+..+++.. ++ ...++|
T Consensus 61 k~iLEiGT~~GyStl~la~al~~~g~v~ti---e~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 61 KNTMEIGVYTGYSLLATALAIPEDGKILAM---DINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEE---ESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CcEEEecchhhhhHHHHHhhCCCCcEEEEE---eccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 48999999999999999864 4455666 555555555543 243 36666666532 22 135689
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|+.- ++...-..++..+.++|+|||.+++..
T Consensus 138 D~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 138 DFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp SEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eEEEec----cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 999874 333444788999999999999999983
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=6e-05 Score=76.85 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=67.8
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh--------------c---ccchhh-cc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER--------------G---LIGTYQ-NW 529 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR--------------g---li~~~~-~~ 529 (636)
|.+ ...|||+|||.|+++.+|+.. .=- |...|.++.++..+.+. + .+..+| |.
T Consensus 96 i~p---G~rVLE~GtGsG~lt~~LAr~vg~~G~---V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di 169 (324)
T d2b25a1 96 INP---GDTVLEAGSGSGGMSLFLSKAVGSQGR---VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 169 (324)
T ss_dssp CCT---TCEEEEECCTTSHHHHHHHHHHCTTCE---EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred CCC---CCEEEEecccccHHHHHHHHHhCCCcE---EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence 566 668999999999999998752 111 22335555667666542 1 122333 44
Q ss_pred ccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHh--cCCCceE
Q 006662 530 CEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITD--GMEWEGR 599 (636)
Q Consensus 530 ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~--~~~W~~~ 599 (636)
++....++ ..||.|..+ --+-..+|-++-|+|||||.+++- -..+++.++-+.++ ++.|...
T Consensus 170 ~~~~~~~~~~~fD~V~LD--------~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 170 SGATEDIKSLTFDAVALD--------MLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp TCCC-------EEEEEEC--------SSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhcccccCCCCcceEeec--------CcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 44444444 678877641 111235889999999999999875 45555555555443 5678543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.29 E-value=0.00034 Score=70.67 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHc----------CCCeEEEEeccccC-CCCCCCe
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIRL-PYPSRAF 283 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~er----------g~~~~~~~~d~~~L-pf~~~sF 283 (636)
..+++||.||.|.|..+..+++.. + .+..+ ++++..++.|++. ...+.+...|.... .-.++.|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~V---EiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMV---DIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEE---ESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEe---cCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 345699999999999999998762 2 33333 7788888877643 23567777775442 2235689
Q ss_pred eEEEecccccccccC-------hHHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQY-------DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d-------~~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|+.-. ..++..+ -..+++.+.+.|+|||.+++..
T Consensus 153 DvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 153 DVVIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9999632 1122111 1579999999999999998864
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.25 E-value=0.0011 Score=66.05 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc---------CCCeEEEEeccccC--CCCCCC
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSRA 282 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~L--pf~~~s 282 (636)
...+++||-||-|.|..+.++++. .+ .++.+ |++++.++.+++- ...+.+...|.... ...+++
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~V---EiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMC---EIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEe---cCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 344569999999999999999987 33 23333 7778888888643 34577777774332 234568
Q ss_pred eeEEEecccccccccCh----HHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~p 321 (636)
||+|+.-. ..+..... ..+++.+.+.|+|||.+++...
T Consensus 155 yDvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 155 YDAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred ccEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99999732 22221111 6799999999999999999854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.00012 Score=74.12 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=77.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----ccc--chhh----ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI--GTYQ----NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli--~~~~----~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+|||++||+|||+.+++.. ...|+.+|.++..+..+.+. |+- -+++ +|.+.+.....+||+|-++
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 679999999999999998753 34677778887777776543 331 1111 2222233334789998875
Q ss_pred cc-cccCCC-----CcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCceEEe
Q 006662 547 SI-FSLYKD-----RCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 547 ~~-fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
-= |+..+. .-....++..+-++|||||.+++.. ..+..+.|.+.+..-..+.++.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 32 221111 1123478899999999999999963 2345555666666666666654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=5.5e-05 Score=79.38 Aligned_cols=97 Identities=6% Similarity=0.018 Sum_probs=59.0
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc------------cchh-hccccccCCCC-----
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL------------IGTY-QNWCEAMSTYP----- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl------------i~~~-~~~ce~~~~yp----- 537 (636)
..+|||+|||.|.+...++.. ++ -.|+.+|.++.++..+.++.- .+.. .+....|..-+
T Consensus 217 gd~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~ 294 (406)
T d1u2za_ 217 GDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 294 (406)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCEEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence 668999999999998877654 33 244666777678777766532 0000 01112222111
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 538 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 538 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
...|++.+++ +...-++...|.||-|+|||||.+|..+
T Consensus 295 ~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 295 IPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp GGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 1234444322 1122356789999999999999999865
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.16 E-value=0.00015 Score=71.74 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=70.0
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh------cccchhhcccccc--CCCC-C
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER------GLIGTYQNWCEAM--STYP-R 538 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR------gli~~~~~~ce~~--~~yp-~ 538 (636)
+.+ ..+|||+|||.|+++.+|+.. .=- |.-.|.++.+++.+.++ +....++..+..+ ..+| .
T Consensus 94 i~P---G~~VLE~G~GsG~lt~~La~~vgp~G~---V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~ 167 (264)
T d1i9ga_ 94 IFP---GARVLEAGAGSGALTLSLLRAVGPAGQ---VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 167 (264)
T ss_dssp CCT---TCEEEEECCTTSHHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred CCC---CCEEEecCcCCcHHHHHHHHhhCCCcE---EEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCC
Confidence 555 779999999999999999753 111 22335555788777652 1222222223222 3466 8
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHH-hcCCCc
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSIT-DGMEWE 597 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~-~~~~W~ 597 (636)
+||.|.. +-=+....+-++.|+|||||.+++-. ..+++.++-+.+ ..-.|.
T Consensus 168 ~fDaV~l--------dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 168 SVDRAVL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp CEEEEEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CcceEEE--------ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 9998765 11233578999999999999998854 454444444433 344463
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.0013 Score=65.71 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCee
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFD 284 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~-Lpf~~~sFD 284 (636)
..+++||-||.|.|..+..+++.. + .++.+ |+++..++.+++. ...+.+...|... +.-.++.||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~V---EIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILC---EVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEE---ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEe---cCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 345699999999999999999873 2 23233 6677777777643 2456777777543 222456899
Q ss_pred EEEecccccccc-c----ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWG-Q----YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~-~----d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|++-. ..+.. + ....+++.+.+.|+|||.+++...
T Consensus 165 vIi~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 165 VIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 999732 21221 1 126899999999999999998754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0012 Score=65.81 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCee
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFD 284 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~-Lpf~~~sFD 284 (636)
..+++||-||.|.|..+..+++. ++ .++.+ |++++.++.|++. ...+.+...|... +.-..++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~v---EiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQC---EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeec---cCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 34569999999999999999987 33 33333 7777888888643 2457777777533 222456899
Q ss_pred EEEecccccccccCh----HHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~p 321 (636)
+|++-. ..+..... ..+++.+.+.|+|||.+++...
T Consensus 154 vIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 154 VIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 999742 22221111 4689999999999999999753
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.07 E-value=0.0012 Score=66.46 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC-CCCCCCee
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSRAFD 284 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L-pf~~~sFD 284 (636)
..+++||-||.|.|..+.++++.. + .+..+ ++++..++.+++-. +.+.+...|.... .-..++||
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~V---EID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMC---EIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEE---CSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEE---cccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 345699999999999999999863 3 33334 88889998887542 3456666664331 12357899
Q ss_pred EEEecccccccccC----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|++-..- +.... ...+++.+.+.|+|||.++....
T Consensus 182 vII~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 182 VIITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 99973321 22111 15789999999999999999854
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00084 Score=68.22 Aligned_cols=111 Identities=11% Similarity=0.098 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASI 274 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~ 274 (636)
.++.+++.+.+++...++. +|||+-||+|.|+..|+++...++++ |.++.+++.|+++ ++ ++.+..++..
T Consensus 196 ~~e~l~~~v~~~~~~~~~~--~vlDLycG~G~fsl~La~~~~~V~gv---E~~~~ai~~A~~na~~n~i~n~~~~~~~~~ 270 (358)
T d1uwva2 196 VNQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVGV---EGVPALVEKGQQNARLNGLQNVTFYHENLE 270 (358)
T ss_dssp HHHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred hhhHHHHHHHHhhccCCCc--eEEEecccccccchhccccccEEEec---cCcHHHHHHHHHhHHhcccccceeeecchh
Confidence 3555666677776555555 89999999999999999987777777 7788888777643 44 5777777654
Q ss_pred cC-C---CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 275 RL-P---YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 275 ~L-p---f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. + .....||+|+..---.. ....+..+.+. +|.=.+++|-
T Consensus 271 ~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 271 EDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp SCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHHH-CCSEEEEEES
T ss_pred hhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHHc-CCCEEEEEeC
Confidence 42 2 23467999987543311 13466666653 7777777873
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.02 E-value=6.8e-05 Score=72.52 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=55.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc--c--cchhhccccccCCCC--Cccceeeecccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG--L--IGTYQNWCEAMSTYP--RTYDLIHADSIF 549 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg--l--i~~~~~~ce~~~~yp--~t~Dl~H~~~~f 549 (636)
...+|||+|||+|-++|.|++.. -.|+.++..+..+..+.++- . +-+.+ ...+..+| ..||.|++.+..
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVVWATA 144 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEESSBB
T ss_pred ccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHhhcch
Confidence 36699999999999998887652 23444555555666665541 1 11111 12344566 569999985543
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. .+.-++-+.|+|||.+|+-
T Consensus 145 ~---------~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 145 P---------TLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp S---------SCCHHHHHTEEEEEEEEEE
T ss_pred h---------hhhHHHHHhcCCCCEEEEE
Confidence 2 2223344679999999884
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=6.8e-05 Score=72.35 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=54.0
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc--c--chhhccc-cccCCCC--Cccce
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL--I--GTYQNWC-EAMSTYP--RTYDL 542 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl--i--~~~~~~c-e~~~~yp--~t~Dl 542 (636)
..+|||+|||+|-+++.|++. .-- |+.+|..+..+..+.++ ++ + ......+ ..+..+| ..||.
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g~---V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~ 153 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTGK---VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 153 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCce---EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence 678999999999887777542 211 23335544566555332 22 1 1111122 2334454 78999
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|++.+... .+.-++-+.|+|||.+|+-
T Consensus 154 I~~~~~~~---------~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 154 IHVGAAAP---------VVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred hhhhcchh---------hcCHHHHhhcCCCcEEEEE
Confidence 99865543 2334566899999999984
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.95 E-value=0.0024 Score=63.13 Aligned_cols=100 Identities=10% Similarity=0.180 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCeeE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAFDM 285 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~-Lpf~~~sFDl 285 (636)
.+++||-||-|.|..+..+++. ++ .+.-+ |++++.++.|++- .+.+.+...|... +.-.+++||+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~V---EID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLV---DIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEE---ESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEe---cCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 3469999999999999999986 33 22223 6677777777543 2356777777543 2234578999
Q ss_pred EEeccccccccc----ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQ----YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~----d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+.-. ..+... ....+++.+.+.|+|||.++....
T Consensus 152 Ii~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 152 IMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp EEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 99732 212211 126899999999999999998753
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0004 Score=68.93 Aligned_cols=131 Identities=12% Similarity=0.253 Sum_probs=84.3
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
-+|||+|||+|..|.+|+.. |- ..|+.+|-++..+.++.+- |+ +.+++ ||-+ ..+ ..||+|=++-=
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSNPP 184 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEECCC
T ss_pred cceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc---ccCCCceeEEEecch
Confidence 45999999999999988653 22 2566677776666665432 22 34444 5544 344 68999877522
Q ss_pred cc------------cCCCC----------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCc-eE-EeccC
Q 006662 549 FS------------LYKDR----------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWE-GR-IADHE 604 (636)
Q Consensus 549 fs------------~~~~~----------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~-~~-~~~~e 604 (636)
+= .+... -.+..++-+.-+.|+|||++++--..+....+.++++...|. +. ..|..
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 264 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCC
Confidence 10 01111 012368899999999999999964444557888888888886 33 33332
Q ss_pred CCCCCcceEEEEE
Q 006662 605 NGPRQREKILFAN 617 (636)
Q Consensus 605 ~~~~~~~~~l~~~ 617 (636)
+.+++++++
T Consensus 265 ----g~~R~v~~r 273 (274)
T d2b3ta1 265 ----DNERVTLGR 273 (274)
T ss_dssp ----SSEEEEEEE
T ss_pred ----CCceEEEEe
Confidence 578888875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=96.88 E-value=0.00052 Score=69.40 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=68.1
Q ss_pred cceEeeecccchhhhhhhcCCCe-EEEEecCCCCCccchHHHHh----hcccchhh--------ccccccCCCCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVIYE----RGLIGTYQ--------NWCEAMSTYPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~e----Rgli~~~~--------~~ce~~~~yp~t~Dl~ 543 (636)
.++|||+.||+|||+-+++..+- .|.+| |.++..+..+.+ .|+=..-| +|.+.+..-.+.||+|
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 57899999999999977765443 34444 444344544443 24411111 2222222234689998
Q ss_pred eecc-ccccCCC-C----cCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCceE
Q 006662 544 HADS-IFSLYKD-R----CEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 544 H~~~-~fs~~~~-~----c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~ 599 (636)
=+|= -|+..+. . -+...++...-++|+|||.++++- ..+....|.+.+..-.+...
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~ 289 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL 289 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEE
Confidence 7641 1332111 1 123468888899999999999963 23445556666655555544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0031 Score=58.35 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=63.1
Q ss_pred HHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-----
Q 006662 207 DIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----- 277 (636)
Q Consensus 207 ~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp----- 277 (636)
+|.+...+ +++. +|||+||+.|.|+.++.++ ...++++ |+.+ .+......+..++.....
T Consensus 12 EI~~k~~l~k~~~--~vlDLg~aPGgw~q~~~~~~~~~~~v~~v---Dl~~------~~~i~~~~~~~~d~~~~~~~~~~ 80 (180)
T d1ej0a_ 12 EIQQSDKLFKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIAC---DLLP------MDPIVGVDFLQGDFRDELVMKAL 80 (180)
T ss_dssp HHHHHHCCCCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEE---ESSC------CCCCTTEEEEESCTTSHHHHHHH
T ss_pred HHHHHhCccCCCC--eEEEEeccCCcceEEEEeeccccceEEEe---eccc------ccccCCceEeecccccchhhhhh
Confidence 44444443 3444 8999999999999999875 2334444 2221 011234566666643321
Q ss_pred ---CCCCCeeEEEecccccccccCh-----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ---YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ---f~~~sFDlV~~s~~L~h~~~d~-----------~~~L~el~RvLKPGG~Liis~p 321 (636)
.....||+|+|-.+. ....+. ...+.-+.++||+||.|++-..
T Consensus 81 ~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 81 LERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 235679999996554 322222 1355667899999999999854
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.77 E-value=0.0011 Score=65.09 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=81.5
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccch
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGT 525 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~ 525 (636)
|..+....+.++. ..+.. ..+||||+||+|+|+-.+++++- -.|+.+|..+..+..+.+. |+-+-
T Consensus 90 f~~~~~~er~ri~------~~~~~---g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~ 158 (260)
T d2frna1 90 FSPANVKERVRMA------KVAKP---DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDR 158 (260)
T ss_dssp CCGGGHHHHHHHH------HHCCT---TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred EecCCHHHHHHHH------hhcCC---ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCce
Confidence 5555555555443 22344 67899999999999988876652 2345556655555554332 44222
Q ss_pred hhccccccCCCC--CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------HHHHHHHHHHHhcCCC
Q 006662 526 YQNWCEAMSTYP--RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------VDILVKIKSITDGMEW 596 (636)
Q Consensus 526 ~~~~ce~~~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------~~~~~~~~~~~~~~~W 596 (636)
+.-.+.....++ ..||.|..+-..+ -.+.|-+.-++|+|||++.+.+. .+..+.++++++...+
T Consensus 159 v~~~~~D~~~~~~~~~~D~Ii~~~p~~-------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~ 231 (260)
T d2frna1 159 MSAYNMDNRDFPGENIADRILMGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 231 (260)
T ss_dssp EEEECSCTTTCCCCSCEEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred EEEEEcchHHhccCCCCCEEEECCCCc-------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 222233333343 6799877632221 23566778899999999977532 2245777888888888
Q ss_pred ceEEe
Q 006662 597 EGRIA 601 (636)
Q Consensus 597 ~~~~~ 601 (636)
++.+.
T Consensus 232 ~v~~~ 236 (260)
T d2frna1 232 DVEKL 236 (260)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 77654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.77 E-value=0.0085 Score=57.89 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=82.3
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcCC-CeEEEEeccccCCC---CCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPY---PSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg~-~~~~~~~d~~~Lpf---~~~sFDlV~~s 289 (636)
.+++|||+|.|.-+.-|+-. +..++-+ |.+...+.+.+ +-+. ++.+....++.+.. ..++||+|+|
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~Lv---es~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s- 147 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTIV---DSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA- 147 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE-
T ss_pred CeEEeecCCCchHHHHHHHhCCCccceee---cchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE-
Confidence 48999999999777666642 4444444 55555555432 3344 45665555554432 2368999998
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec----------
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI---------- 359 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~---------- 359 (636)
+++ .....++.-....+++||.+++.-.. ...++.++.++....++++...
T Consensus 148 RAv----a~l~~ll~~~~~~l~~~g~~i~~KG~---------------~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~ 208 (239)
T d1xdza_ 148 RAV----ARLSVLSELCLPLVKKNGLFVALKAA---------------SAEEELNAGKKAITTLGGELENIHSFKLPIEE 208 (239)
T ss_dssp ECC----SCHHHHHHHHGGGEEEEEEEEEEECC----------------CHHHHHHHHHHHHHTTEEEEEEEEEECTTTC
T ss_pred hhh----hCHHHHHHHHhhhcccCCEEEEECCC---------------ChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCC
Confidence 444 35578999999999999999887320 1122334455556677775432
Q ss_pred ccccEEEEeCCCCCcccccc
Q 006662 360 QKKDLAIWQKPTNHVHCIAN 379 (636)
Q Consensus 360 ~~~~~aIWqKp~~~~~c~~~ 379 (636)
....+.+++|-.+.-..|.+
T Consensus 209 ~~r~lv~i~K~~~~p~~yPR 228 (239)
T d1xdza_ 209 SDRNIMVIRKIKNTPKKYPR 228 (239)
T ss_dssp CEEEEEEEEECSCCCTTCSC
T ss_pred CCEEEEEEEECCCCCCCCCC
Confidence 11236777765433234433
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0052 Score=58.15 Aligned_cols=90 Identities=17% Similarity=0.065 Sum_probs=64.1
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
++||+|+|.|.-+.-++-. ...++-+ |.+...+.+.+ +-+. ++.+.....+.+. ...+||+|+| +++
T Consensus 68 ~ilDiGsGaG~PGi~laI~~p~~~~~Lv---es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~s-RA~- 141 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVRPEAHFTLL---DSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVIS-RAF- 141 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEEC-SCS-
T ss_pred ceeeeeccCCceeeehhhhcccceEEEE---ecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehh-hhh-
Confidence 8999999999777766643 4555555 66666555543 3344 5677766666654 3568999987 555
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.....++.-+...+++||.+++.
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 24568999999999999999887
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.01 Score=59.50 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=70.4
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYP 279 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~Lpf~ 279 (636)
...++...+|. +|||+.||.|.=+..++.. ...++.. |.++..++...+ .+. ++.+...|...++..
T Consensus 108 ~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~---d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~ 182 (313)
T d1ixka_ 108 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAF---DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL 182 (313)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEE---CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred hhhcccCCccc--eeeecccchhhhhHhhhhhcccccceeee---ccCHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 44455555666 9999999999877777654 3344455 777776655432 233 455555566666666
Q ss_pred CCCeeEEEe----c--cccc-----ccccCh----------HHHHHHHHhcccCCcEEEEEeCC
Q 006662 280 SRAFDMAHC----S--RCLI-----PWGQYD----------GLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 280 ~~sFDlV~~----s--~~L~-----h~~~d~----------~~~L~el~RvLKPGG~Liis~p~ 322 (636)
...||.|++ + .++. .|...+ ..+|....+.|||||+++.++-.
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 788999995 2 1110 111111 15788899999999999999753
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0008 Score=68.12 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=58.1
Q ss_pred cceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhh-----------cc-cchhhccccccCCCC---Ccc
Q 006662 477 YRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYER-----------GL-IGTYQNWCEAMSTYP---RTY 540 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eR-----------gl-i~~~~~~ce~~~~yp---~t~ 540 (636)
-..|||+|||.|.+.-.++. .+. .+++.+|.++.++.++-+. |+ .+-+.-.|..|...| ..+
T Consensus 152 ~~~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~ 229 (328)
T d1nw3a_ 152 DDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 229 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence 56899999999998876653 343 3556677776666665443 11 111111223344333 334
Q ss_pred --ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 --DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 --Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|-+++ +...-++...|.||-|+|||||.+|..+
T Consensus 230 ~advi~~~~----~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 230 NTSVIFVNN----FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HCSEEEECC----TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cceEEEEcc----eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 3333321 1122356789999999999999999864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.49 E-value=0.0007 Score=68.50 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=70.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhcccc-------ccCCCCCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCE-------AMSTYPRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce-------~~~~yp~t~Dl~H~ 545 (636)
..+|||++||+|+|+.+++..+. -.|+.+|.++..+..+.+ -|+-...+-.+. .+..-.++||+|=+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 56899999999999999887754 234555666666666544 233222221221 12222368999876
Q ss_pred ccc-cccCCC-----CcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcC
Q 006662 546 DSI-FSLYKD-----RCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGM 594 (636)
Q Consensus 546 ~~~-fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~ 594 (636)
+-- |+..+. ......++...-++|+|||.+++.. ..+..+.|.+.+...
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~ 284 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKA 284 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHc
Confidence 543 222211 1224468999999999999999963 223445555544433
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.41 E-value=0.0072 Score=56.60 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=75.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cch-hhccccccCCCCCccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGT-YQNWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~-~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||+|+++.+++.++- ..|+.+|.++..+..+.+.-- .+. ..-.+.....++..||+|=++-=|.....
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~ 124 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRK 124 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSST
T ss_pred CCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccc
Confidence 46899999999999987777764 355666777677777765311 111 11223445567888999988877766556
Q ss_pred CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHhcCCCceEE
Q 006662 555 RCEMEDVLLEMDRILRPEGSVII--RDDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
..+++.+... +.+++.+.. ....+....++.+++...|.+..
T Consensus 125 ~~d~~~l~~~----~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 125 HADRPFLLKA----FEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTTHHHHHHH----HHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHH----HhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 6666654332 333444433 34555566677888888887654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.40 E-value=0.0037 Score=65.18 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-----------------CCEEEEcCcCCchHHHHHHHHHc--
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----------------NILAVSFAPRDTHEAQVQFALER-- 262 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----------------~v~vv~i~p~Dis~a~l~~A~er-- 262 (636)
...++.+.+++....+. +|||-.||+|.|...+.++ .+.+. |+++.....|+-+
T Consensus 148 ~~Iv~~mv~ll~~~~~~--~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~-----E~~~~~~~la~~n~~ 220 (425)
T d2okca1 148 RPLIQAMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGV-----DNTPLVVTLASMNLY 220 (425)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEE-----ESCHHHHHHHHHHHH
T ss_pred hhhhHhhheeccCcccc--eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhh-----hccHHHHHHHHhhhh
Confidence 55677788887544444 8999999999999877653 12333 5566666555422
Q ss_pred --CC---CeEEEEeccccCCCCCCCeeEEEecccccccc---------------cCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 263 --GV---PALIGVMASIRLPYPSRAFDMAHCSRCLIPWG---------------QYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 263 --g~---~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~---------------~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+. ...+...+.... .+...||+|+++.-+..-. .+. ..++..+.+.|++||.+++..|
T Consensus 221 l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp HTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 22 123444444332 3457899999976551100 001 3589999999999999999977
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.0023 Score=63.20 Aligned_cols=153 Identities=10% Similarity=0.131 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---c
Q 006662 451 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---I 523 (636)
Q Consensus 451 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i 523 (636)
+.+|+.+.+.+..+.+- .....|+|+|||.|..+.++++.+= .+|+.+|-++..+.++.+- |+ +
T Consensus 92 RpeTE~lv~~~~~~~~~-------~~~~~vld~g~GsG~i~~~la~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~ 162 (271)
T d1nv8a_ 92 RPETEELVELALELIRK-------YGIKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRF 162 (271)
T ss_dssp CTTHHHHHHHHHHHHHH-------HTCCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred hhhhhhhhhhhhhhhcc-------ccccEEEEeeeeeehhhhhhhhccc--ceeeechhhhhHHHHHHHHHHHcCCCcee
Confidence 45677787776655432 2245799999999998888876542 2455667766666666542 44 3
Q ss_pred chhh-ccccccCCCCCccceeeecc-------ccc---cCC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHH
Q 006662 524 GTYQ-NWCEAMSTYPRTYDLIHADS-------IFS---LYK-------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILV 585 (636)
Q Consensus 524 ~~~~-~~ce~~~~yp~t~Dl~H~~~-------~fs---~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~ 585 (636)
.+++ +|-+.+......||+|-+|= ... .|. ..-.+..+-.=+-++|+|||++++--..+.-+
T Consensus 163 ~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~ 242 (271)
T d1nv8a_ 163 FVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVE 242 (271)
T ss_dssp EEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHH
T ss_pred EEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHH
Confidence 3333 45444443346789876641 111 010 01112221111468999999999975555667
Q ss_pred HHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 586 KIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 586 ~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
+|+++++...| ..|.. +.+++++++|+
T Consensus 243 ~v~~l~~~~g~---~kDl~----g~~R~~~~~k~ 269 (271)
T d1nv8a_ 243 ELKKIVSDTVF---LKDSA----GKYRFLLLNRR 269 (271)
T ss_dssp HHTTTSTTCEE---EECTT----SSEEEEEEECC
T ss_pred HHHHHHHhCCE---EeccC----CCcEEEEEEEc
Confidence 78888777655 23332 67899999986
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0026 Score=62.04 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+...+++ .|||||||.|.++..|++++..++.+ ++++.+++..+++. .++.+..+|....++
T Consensus 7 ~~~~~~Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~~v~ai---EiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQLTVI---ELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCSCEEEE---CCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCchHHHHHHHccCCceEEE---EeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 34667788877665555 89999999999999999997766667 88888888776553 347777777776653
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.29 E-value=0.027 Score=54.47 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC----CEEEEcCcCCchHHHHHHHHHcCCC-eEEEEeccccCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYP 279 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~----v~vv~i~p~Dis~a~l~~A~erg~~-~~~~~~d~~~Lpf~ 279 (636)
+..+.+..-+.++. +|+|+|||.|.|+.+++.+. +.+..+ +.|.++.-+. ....+-+ +.+...+ .-.-.+
T Consensus 55 l~~~~~~~~~~~~~--~vvDlG~~pGgws~~~a~~~~v~~V~g~~i-G~d~~e~P~~-~~~~~~ni~~~~~~~-dv~~l~ 129 (257)
T d2p41a1 55 LRWFVERNLVTPEG--KVVDLGCGRGGWSYYCGGLKNVREVKGLTK-GGPGHEEPIP-MSTYGWNLVRLQSGV-DVFFIP 129 (257)
T ss_dssp HHHHHHTTSSCCCE--EEEEETCTTSHHHHHHHTSTTEEEEEEECC-CSTTSCCCCC-CCSTTGGGEEEECSC-CTTTSC
T ss_pred HHHHHHhcCccCCC--eEEEecCCCChHHHHHHhhcCCCceeEEEe-cCccccCCcc-ccccccccccchhhh-hHHhcC
Confidence 34444444344444 89999999999999999773 222222 1232211000 0000111 1221111 112235
Q ss_pred CCCeeEEEecccccccccCh-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
.+..|+|+|-.+- . ..++ -.++.-+.++|+|||-|++-..
T Consensus 130 ~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 130 PERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp CCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 6789999996542 2 2233 1466777899999999988754
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.22 E-value=0.0011 Score=64.51 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCcceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcc---cc-hhhccccccCCCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl---i~-~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
..++.|||+|||.|.++.+++++ .+.++. .+ +++-+.+. |. +-+| .|.+.|. .|++...
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~D-----lp----~vi~~~~~~~ri~~~~gd---~~~~~p~-~D~~~l~ 146 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFD-----LP----QVIENAPPLSGIEHVGGD---MFASVPQ-GDAMILK 146 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEE-----CH----HHHTTCCCCTTEEEEECC---TTTCCCC-EEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEec-----ch----hhhhccCCCCCeEEecCC---ccccccc-ceEEEEe
Confidence 66899999999999999999764 234443 22 12222222 11 1122 3556674 4998888
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+++-.+.+. +...||-.+-+.|+|||.++|-|
T Consensus 147 ~vLh~~~de-~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 887776432 34589999999999999999976
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.22 E-value=0.00029 Score=63.46 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=57.7
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhhcccccc-CCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQNWCEAM-STYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~~~ce~~-~~yp~t~Dl~H~~~ 547 (636)
...+|||++||+|+||...+.++. -+|.-+|.....+..+.+- |+ +-+++.=+..+ ......||+|.++-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 356899999999999976666665 2555566665555554332 33 22333112222 22347899998854
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
=|........+ +.+.+ .++|+|+|.+|+..
T Consensus 92 Py~~~~~~~~l-~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAKETIVATI-EALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp SSHHHHHHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred hhccchHHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence 33311111111 22222 47999999999853
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0064 Score=60.04 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEeccccC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIRL 276 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~~L 276 (636)
..++.|.+.+...+++ .|||||+|.|.++..|++++..++.+ ++++.+++...++. ..+.+..+|....
T Consensus 8 ~i~~kIv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~~v~ai---E~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 8 LIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVAC---ELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp HHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHHhCCCCCC--EEEEECCCchHHHHHHHhcCCcEEEE---EEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 4566777777665555 89999999999999999987776666 77777777665431 2467788887776
Q ss_pred CCCCCCeeEEEecc
Q 006662 277 PYPSRAFDMAHCSR 290 (636)
Q Consensus 277 pf~~~sFDlV~~s~ 290 (636)
+++ .++.|+++.
T Consensus 83 ~~~--~~~~vV~NL 94 (278)
T d1zq9a1 83 DLP--FFDTCVANL 94 (278)
T ss_dssp CCC--CCSEEEEEC
T ss_pred hhh--hhhhhhcch
Confidence 654 356677765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.10 E-value=0.002 Score=60.67 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=61.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRC 556 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c 556 (636)
.++|||+|||+|.+|-++...+. -+|+.+|..+.++..+.+. + ..+.--|..+...|..||+|=+|=-|.......
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N-~-~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~ 124 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRN-C-GGVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 124 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHH-C-TTSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHc-c-ccccEEEEehhhcCCcceEEEeCcccchhhhhc
Confidence 57999999999999876666654 2456667776787776553 2 323333455666888999998876665433444
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHH
Q 006662 557 EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSIT 591 (636)
Q Consensus 557 ~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~ 591 (636)
++++ ++..+.+++.++..-......-+++.+
T Consensus 125 D~~f----l~~a~~~~~~iy~ih~~~~~~~i~~~~ 155 (197)
T d1ne2a_ 125 DRAF----IDKAFETSMWIYSIGNAKARDFLRREF 155 (197)
T ss_dssp CHHH----HHHHHHHEEEEEEEEEGGGHHHHHHHH
T ss_pred hHHH----HHHHHhcCCeEEEehhhhHHHHHHHHh
Confidence 4443 234455555544332233333344433
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0078 Score=59.42 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=65.5
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCC--CC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLP--YP 279 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lp--f~ 279 (636)
...++...++. +|||+.+|.|.=+..|++. +..++.. |.++..++. ..+.+........+..... ..
T Consensus 94 ~~~~L~~~~g~--~vLD~CAaPGgKt~~la~l~~~~~i~a~---d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~ 168 (284)
T d1sqga2 94 CMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAV---DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG 168 (284)
T ss_dssp HHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEE---ESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred cccccCccccc--eeEeccCccccchhhhhhhhhhhhhhhh---hcchhhhhhHhhhhhcccccceeeeccccccchhcc
Confidence 34445555555 9999999999888888765 2333333 444444333 3344665544444332221 24
Q ss_pred CCCeeEEEe----c--cccc-------ccccC--------hHHHHHHHHhcccCCcEEEEEeCC
Q 006662 280 SRAFDMAHC----S--RCLI-------PWGQY--------DGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 280 ~~sFDlV~~----s--~~L~-------h~~~d--------~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.+.||.|++ + ..+- .+.+. ...+|..+.+.|||||+++.++-.
T Consensus 169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 568999995 2 2220 11111 125788899999999999999753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.004 Score=59.36 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=76.4
Q ss_pred CcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccch----HHHHhhcc---cchhh-ccccccCC-----CCCc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTL----GVIYERGL---IGTYQ-NWCEAMST-----YPRT 539 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l----~~~~eRgl---i~~~~-~~ce~~~~-----yp~t 539 (636)
+.++||++|+|+|--+.+|++- +--+..+ |..+... +.+-+-|+ |-+.+ +-.+.+.. .+.+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~ti---e~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~ 135 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTC---EVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 135 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEE---eechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence 3789999999999888888652 2222333 2222232 22223344 21221 22222222 2578
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------HHHH-HHHHHHhcCCCceEEecc
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV---------------DILV-KIKSITDGMEWEGRIADH 603 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------~~~~-~~~~~~~~~~W~~~~~~~ 603 (636)
||+|..++-- -.....+-++-+.|||||.+|+-|-. ..+. -.+.|.+.-+|...+.
T Consensus 136 fD~ifiD~dk------~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~ll-- 207 (219)
T d2avda1 136 FDVAVVDADK------ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL-- 207 (219)
T ss_dssp EEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred ccEEEEeCCH------HHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEe--
Confidence 9999885433 23456677778999999999995321 1222 2344677888988876
Q ss_pred CCCCCCcceEEEEEe
Q 006662 604 ENGPRQREKILFANK 618 (636)
Q Consensus 604 e~~~~~~~~~l~~~K 618 (636)
|. .+.++||+|
T Consensus 208 ---Pi-gdGl~ia~K 218 (219)
T d2avda1 208 ---PL-GDGLTLAFK 218 (219)
T ss_dssp ---CS-TTCEEEEEE
T ss_pred ---ec-CCeeEEEEe
Confidence 32 367999998
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=95.92 E-value=0.02 Score=55.20 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhh--hhcCCCeEEEEecCCCCC-ccchH-HHHhhcc--cc
Q 006662 451 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAA--ALVDDPLWVMNTVPVEAK-INTLG-VIYERGL--IG 524 (636)
Q Consensus 451 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa--~l~~~~v~~mnv~~~~~~-~~~l~-~~~eRgl--i~ 524 (636)
.+..+.|.+++-.=..++..+.. ....+++|+|+|-|==|- |+...+. -+.++..... .+.|+ ++.+=|| +-
T Consensus 46 ~~~~~i~~rHi~DSl~~~~~~~~-~~~~~ilDiGSGaGfPGi~laI~~p~~-~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 46 TEKKEVYLKHFYDSITAAFYVDF-NQVNTICDVGAGAGFPSLPIKICFPHL-HVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp CSHHHHHHHTHHHHHGGGGTSCG-GGCCEEEEECSSSCTTHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred CCHHHHHHHhccchhhhhhhhcc-cCCCeEEeecCCCchHHHHHHHhCCCc-cceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 34457898887654444443432 346789999999763232 2222222 2333333222 23343 3344466 34
Q ss_pred hhhccccccCC---CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCce
Q 006662 525 TYQNWCEAMST---YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 525 ~~~~~ce~~~~---yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~ 598 (636)
++|.-.|.+.. +...||+|=| .+-..++.++--....|+|||.+++- +-.+.+...++..+.+.++.
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEeehhhhccccccccccceEEEE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 56666665543 3468999887 34467888888899999999999995 44567777777888888876
Q ss_pred EEecc-C-CCCCCcceEEEEEecC
Q 006662 599 RIADH-E-NGPRQREKILFANKKY 620 (636)
Q Consensus 599 ~~~~~-e-~~~~~~~~~l~~~K~~ 620 (636)
..... + ......-.|++.+|.=
T Consensus 197 ~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECS
T ss_pred EEEEEEeCCCCCCCEEEEEEEECC
Confidence 53221 1 1111234677777743
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.88 E-value=0.0041 Score=59.92 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=54.3
Q ss_pred cEEEEeCCCCcHHHHHHhhc------CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp----f~~~sFDlV~~s 289 (636)
.+|||||++.|.-+..++.. ...++++ |+.......+......+.+..+|..... +....+|+|+.-
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~gi---DId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID 158 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGI---DRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 158 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEE---ESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEec---CcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEc
Confidence 38999999999766655531 3344444 3332222222233346778877754332 335568887753
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. - |.......-+ ++..+|+|||++++..
T Consensus 159 ~-~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 159 N-A-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp S-S-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred C-C-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 3 2 3221111222 4668999999999974
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.86 E-value=0.0013 Score=62.88 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=53.0
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHH----hhcccchhhccccccCCCC--Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMSTYP--RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~----eRgli~~~~~~ce~~~~yp--~t~Dl~H~~~ 547 (636)
.-+|||+|||+|-.+|-|.+. .|.++-+.+ ..+..+. +.|+-.+.--.+..+..+| ..||.|++.+
T Consensus 79 g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~-----~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~ 153 (215)
T d1jg1a_ 79 GMNILEVGTGSGWNAALISEIVKTDVYTIERIP-----ELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTA 153 (215)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCH-----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred cceEEEecCCCChhHHHHHHhhCceeEEEeccH-----HHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeec
Confidence 679999999999998877643 354443332 3333333 3344222222234556666 7899999843
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
-.. .++.-|++ -|+|||.+|+-
T Consensus 154 a~~------~ip~~l~~---qL~~gGrLv~p 175 (215)
T d1jg1a_ 154 GAP------KIPEPLIE---QLKIGGKLIIP 175 (215)
T ss_dssp BBS------SCCHHHHH---TEEEEEEEEEE
T ss_pred ccc------cCCHHHHH---hcCCCCEEEEE
Confidence 332 13344544 59999999873
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.85 E-value=0.00077 Score=64.71 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=53.4
Q ss_pred cceEeeecccchhhhhhhcCC----Ce-EEEEecCCCCCccchHHHHhh---------cc--cchhhccccccCCCC--C
Q 006662 477 YRNLLDMNAYLGGFAAALVDD----PL-WVMNTVPVEAKINTLGVIYER---------GL--IGTYQNWCEAMSTYP--R 538 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~----~v-~~mnv~~~~~~~~~l~~~~eR---------gl--i~~~~~~ce~~~~yp--~ 538 (636)
..+|||+|||+|-++|.|.+. ++ -.-.|..++..+..+..+.++ |+ +-+.+ +.....+| .
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~--~d~~~~~~~~~ 158 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE--GDGRKGYPPNA 158 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE--SCGGGCCGGGC
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe--ccccccccccc
Confidence 679999999999988887643 21 000122334444555555443 11 11222 23344555 6
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.||.|++.+.... ++. .+-+.|+|||.+|+-
T Consensus 159 ~fD~Iiv~~a~~~------~p~---~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPD------TPT---ELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSS------CCH---HHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechh------chH---HHHHhcCCCcEEEEE
Confidence 8999998554331 223 345789999999873
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.81 E-value=0.0018 Score=61.63 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=65.9
Q ss_pred CcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHH----Hhhcc---cchhh-ccccccCC----CC-Cc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVI----YERGL---IGTYQ-NWCEAMST----YP-RT 539 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~----~eRgl---i~~~~-~~ce~~~~----yp-~t 539 (636)
+.++||++|+|+|..+.+|++. +-.+..+ |..+..+..+ -.-|+ |-+++ +..+.+.. ++ .+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~si---d~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTM---EMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEE---eccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 4689999999999988888652 3222222 2222333333 44466 33332 22233333 33 67
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEE
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~ 600 (636)
||+|..+|-.+.|. ....+.|.-|+|||||.+|+-| ..+.+..|++ .=+|....
T Consensus 133 ~D~ifiD~~~~~~~----~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 133 LDMVFLDHWKDRYL----PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEEEECSCGGGHH----HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred cceeeecccccccc----cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 99999865433321 2345778889999999866533 2445555544 34565553
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.62 E-value=0.0072 Score=58.17 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCcceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhh-cccchhhccccccCCCCCccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eR-gli~~~~~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
...+.|+|+|||.|.++.+|+++ .+.+.-+-++-.. +.+. .+-.+-+|. |.+.|.. |..-..+++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~------~~~~~r~~~~~~d~---~~~~P~a-d~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED------APSYPGVEHVGGDM---FVSIPKA-DAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT------CCCCTTEEEEECCT---TTCCCCC-SCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh------cccCCceEEecccc---cccCCCc-ceEEEEEEe
Confidence 55899999999999999999864 3455544333222 1111 122334443 3456632 222122233
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
-.+.+ -+...||-++-+.|+|||.++|-|
T Consensus 150 h~~~d-~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 150 HDWSD-EHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp TTSCH-HHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred ecCCH-HHHHHHHHHHHHhcCCCceEEEEE
Confidence 33321 134579999999999999999975
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0059 Score=65.39 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----C----------------CEEEEcCcCCchHHHHHHHHH
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----N----------------ILAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~----------------v~vv~i~p~Dis~a~l~~A~e 261 (636)
...++.+.+++....+. +|+|-.||+|.|.....+. . ....++ |++..+.+.|.-
T Consensus 150 ~~Iv~~mv~ll~~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~---E~~~~~~~la~~ 224 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL---ELVPGTRRLALM 224 (524)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEE---ESCHHHHHHHHH
T ss_pred cchhHhhhhcccCccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhh---ccCHHHHHHHHH
Confidence 45677788887655554 8999999999998776542 0 012233 556666666542
Q ss_pred c----CCCe------EEEEeccccCC-CCCCCeeEEEecccccc-c-----------ccCh-HHHHHHHHhcccCCcEEE
Q 006662 262 R----GVPA------LIGVMASIRLP-YPSRAFDMAHCSRCLIP-W-----------GQYD-GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 262 r----g~~~------~~~~~d~~~Lp-f~~~sFDlV~~s~~L~h-~-----------~~d~-~~~L~el~RvLKPGG~Li 317 (636)
+ +... .+...+....+ .....||+|+++.-+.. + ..+. -.++..+.+.|+|||++.
T Consensus 225 nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 225 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp HHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 2 2211 11111211111 23467999999774411 0 0111 358999999999999999
Q ss_pred EEeC
Q 006662 318 LSGP 321 (636)
Q Consensus 318 is~p 321 (636)
+..|
T Consensus 305 iIlP 308 (524)
T d2ar0a1 305 VVVP 308 (524)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.025 Score=50.86 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=66.5
Q ss_pred HHHhhccCCCCCcEEEEeCC--CCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-------
Q 006662 208 IGKLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------- 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------- 277 (636)
+.+.....+++ +||-+|+ |.|..+..+++. +..++.+ +.+++..+.+++.|....+ +.....
T Consensus 20 l~~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~ 91 (174)
T d1yb5a2 20 LIHSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGT---AGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKK 91 (174)
T ss_dssp HHTTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEE---ESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHH
T ss_pred HHHHhCCCCCC--EEEEEeccccccccccccccccCcccccc---cccccccccccccCccccc---ccccccHHHHhhh
Confidence 34444455666 9999996 467778788775 7777766 4567778888887764333 222211
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+.||+|+..- ....+.+..++|+|||.++..+.
T Consensus 92 ~t~~~g~d~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 92 YVGEKGIDIIIEML--------ANVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp HHCTTCEEEEEESC--------HHHHHHHHHHHEEEEEEEEECCC
T ss_pred hhccCCceEEeecc--------cHHHHHHHHhccCCCCEEEEEec
Confidence 2346799998742 13567888999999999998753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.41 E-value=0.027 Score=50.22 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=67.0
Q ss_pred hccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC---------CCC
Q 006662 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---------YPS 280 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp---------f~~ 280 (636)
...++++ +||-+||| .|.++..+++. +..++.+ |.++..++.+++.+....+..-...... ...
T Consensus 22 ~~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi~v---~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 22 AGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCT---ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred hCCCCCC--EEEEEcccccchhhHhhHhhhccccccc---chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 3455666 89999998 67777777765 7777766 7888999999888765544321111100 113
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+|+|+-.- .....+....++|||||.+++.+.
T Consensus 97 ~g~D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 97 DLPNVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SCCSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred cCCceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 4689887532 124678889999999999999864
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.18 E-value=0.015 Score=53.85 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCcceEeeecccchh----hhhhhcCC---CeEEEEecCCCCCccchHHHHhhcccch---------hh-c---------
Q 006662 475 GRYRNLLDMNAYLGG----FAAALVDD---PLWVMNTVPVEAKINTLGVIYERGLIGT---------YQ-N--------- 528 (636)
Q Consensus 475 ~~~r~vlD~~~g~gg----faa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgli~~---------~~-~--------- 528 (636)
++--+|+++||++|- .|..|.+. .-|-..++.+|-+...|..+.+ |..+. +. .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-CcccHHHHhhhhHHHHhhceeecCCCc
Confidence 334568999999996 44444321 1123457788877667766642 33110 00 0
Q ss_pred ---ccc----------------ccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 529 ---WCE----------------AMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 529 ---~ce----------------~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|.. .....| +.||+|=|-+|+..... -....++-.+-+.|+|||++++...
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCcEEEEecC
Confidence 000 001122 78999999999876543 2446899999999999999999743
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.073 Score=52.35 Aligned_cols=107 Identities=13% Similarity=0.009 Sum_probs=62.7
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccCCCC--
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYP-- 279 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~Lpf~-- 279 (636)
.++...++. +|||+.+|.|.-+.+++.. ...++.+ |++...++..++ .|. ++.+...|...+...
T Consensus 88 ~~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~---d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~ 162 (293)
T d2b9ea1 88 MLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAF---DLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP 162 (293)
T ss_dssp HHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG
T ss_pred cccCCCccc--eEEecccchhhHHHHHHHHhcCCceEeee---cCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc
Confidence 334445555 8999999999988888764 3444455 667666655433 344 466666666555422
Q ss_pred -CCCeeEEEe----cc--ccc-----cc--ccCh----------HHHHHHHHhcccCCcEEEEEeCC
Q 006662 280 -SRAFDMAHC----SR--CLI-----PW--GQYD----------GLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 280 -~~sFDlV~~----s~--~L~-----h~--~~d~----------~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.+.||.|++ +. ++- .| ..+. ..++..+. .|+|||+++.++-.
T Consensus 163 ~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 163 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 257999995 22 110 01 0010 12344444 47999999999753
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=94.62 E-value=0.033 Score=55.57 Aligned_cols=144 Identities=10% Similarity=0.024 Sum_probs=81.0
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc-----cchhh-ccccccCCCCCccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL-----IGTYQ-NWCEAMSTYPRTYD 541 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl-----i~~~~-~~ce~~~~yp~t~D 541 (636)
...++||.+|.|.|+.+..+.+. ++--+-+|..|. ..++++.+. |. +-+++ |+-+-+...++.||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG--ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH--HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 45789999999999999988776 453333455444 466655443 11 11111 22233334578899
Q ss_pred eeeeccc--cccCCCCcCH--HHHHHHHhhcccCCcEEEEE------eCHHHHHHHHHHHhcCCCceEEeccCCCCC-Cc
Q 006662 542 LIHADSI--FSLYKDRCEM--EDVLLEMDRILRPEGSVIIR------DDVDILVKIKSITDGMEWEGRIADHENGPR-QR 610 (636)
Q Consensus 542 l~H~~~~--fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~ 610 (636)
+|-.+.. +........+ .+.+..+.|.|+|||.++.. ...++...|.+.+++.=..+...-.---+. ..
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~ 233 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN 233 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCC
Confidence 9986432 1111111111 47788999999999999884 223455667665555444444332100000 13
Q ss_pred ceEEEEEecC
Q 006662 611 EKILFANKKY 620 (636)
Q Consensus 611 ~~~l~~~K~~ 620 (636)
..+++|.|..
T Consensus 234 w~f~~aS~~~ 243 (312)
T d1uira_ 234 FGFLLASDAF 243 (312)
T ss_dssp EEEEEEESSS
T ss_pred CEeEEEeCCC
Confidence 4578888864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.014 Score=52.58 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=63.8
Q ss_pred hccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEe
Q 006662 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPSRAFDMAHC 288 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-Lpf~~~sFDlV~~ 288 (636)
....+++ +||-+|+| .|.++..+++. |..++.+ |.+++.++.+++-|....+...+... ..-..+.||+|+.
T Consensus 23 ~~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi~~---~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 23 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVI---SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEE---ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred hCcCCCC--EEEEECCCCcchhHHHHhhhcccccccc---ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence 3455666 89999998 67888887765 7777666 66777788888887654332111111 1112457998886
Q ss_pred cccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.-.-.+ ...+....+.|+|||++++.+
T Consensus 98 ~~~~~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 98 CASSLT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CCSCST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred EecCCc-----cchHHHHHHHhhccceEEEec
Confidence 322211 112456789999999999986
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.44 E-value=0.032 Score=50.54 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=66.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCC-CcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccc--c-----C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASI--R-----L 276 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~--~-----L 276 (636)
.+.+....++|+ +||-+|+| .|.++..+++. |. .++.+ |.++..++.+++.|....+...+.. . .
T Consensus 19 al~~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 19 AFDEYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIVI---AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIM 93 (182)
T ss_dssp HHHTCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEE---ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCC--EEEEECCCccchhheeccccccccccccc---ccccccccccccccceEEEeccccchHHHHHHHH
Confidence 344444455666 99999998 47777787776 65 55556 7788899999887754333211110 0 0
Q ss_pred C-CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 P-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 p-f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. .....||+|+-.-.- ...+....+.|+|||.+++.+
T Consensus 94 ~~~~~~g~Dvvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 94 DITHGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHTTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred HhhCCCCceEEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 0 123469998853211 246788899999999998875
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.079 Score=49.64 Aligned_cols=132 Identities=12% Similarity=0.087 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhh--hhhcCCCeEEEEecCCCC-CccchHH-HHhhcc--cch
Q 006662 452 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFA--AALVDDPLWVMNTVPVEA-KINTLGV-IYERGL--IGT 525 (636)
Q Consensus 452 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfa--a~l~~~~v~~mnv~~~~~-~~~~l~~-~~eRgl--i~~ 525 (636)
+..+.|.+++-+=..+++.+.. -+|+|+|+|-|==| -|+...++- +-++.... ....|.. +.+=|| +-+
T Consensus 45 ~~~~~~~rHi~DSl~~~~~~~~----~~ilDiGsGaG~PGi~laI~~p~~~-~~Lves~~KK~~FL~~~~~~L~L~nv~v 119 (207)
T d1jsxa_ 45 DPNEMLVRHILDSIVVAPYLQG----ERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEP 119 (207)
T ss_dssp ---CHHHHHHHHHHHHGGGCCS----SEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEE
T ss_pred CHHHHHHHHhcchHhhhhhhcC----CceeeeeccCCceeeehhhhcccce-EEEEecchHHHHHHHHHHHHcCCcceee
Confidence 3446788887643334444433 27999999976323 233333331 22222222 1223333 444466 334
Q ss_pred hhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 526 YQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 526 ~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
+|+-.|.+ .+ ..||+|=| .+-+.++.++--.-+.|+|+|.+++--.....++++.+- -.|+..
T Consensus 120 ~~~R~E~~--~~~~~fD~V~s-------RA~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~~ 183 (207)
T d1jsxa_ 120 VQSRVEEF--PSEPPFDGVIS-------RAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQVE 183 (207)
T ss_dssp EECCTTTS--CCCSCEEEEEC-------SCSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEEE
T ss_pred eccchhhh--ccccccceehh-------hhhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEEE
Confidence 44433432 23 58998876 344678888888899999999999975544444554432 366654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=94.17 E-value=0.011 Score=54.58 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=74.7
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC-CCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-PRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y-p~t~Dl~H~~~~fs 550 (636)
..+|||+||+-|||--++.++ .|+..-..|.+.-.+ ...-.|-++.....-.....+ ...+|+|=+|+-+.
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~---~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~ 99 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG---VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPN 99 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTT---EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCC---ceEeecccccchhhhhhhhhccCcceeEEEecccch
Confidence 668999999999999887653 244444444432111 111122222111111111112 25699999998876
Q ss_pred cCCCCc--------CHHHHHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCCceEEeccC-CCCCCcceEEEE
Q 006662 551 LYKDRC--------EMEDVLLEMDRILRPEGSVIIR-----DDVDILVKIKSITDGMEWEGRIADHE-NGPRQREKILFA 616 (636)
Q Consensus 551 ~~~~~c--------~~~~~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e-~~~~~~~~~l~~ 616 (636)
....+- .....|.=+.++|||||.||+- +..+.+..++...+. +.++-.+ +-+...|.-+||
T Consensus 100 ~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~----V~~~KP~aSR~~SsE~Ylv~ 175 (180)
T d1ej0a_ 100 MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK----VKVRKPDSSRARSREVYIVA 175 (180)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEE----EEEECCTTSCTTCCEEEEEE
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCE----EEEECCCCcccCCceEEEEE
Confidence 533221 1113444467999999999995 333344444444433 3333322 334568999999
Q ss_pred Ee
Q 006662 617 NK 618 (636)
Q Consensus 617 ~K 618 (636)
+.
T Consensus 176 ~g 177 (180)
T d1ej0a_ 176 TG 177 (180)
T ss_dssp EE
T ss_pred ec
Confidence 74
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=93.92 E-value=0.0073 Score=55.04 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=56.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccc-hhhccccccCC---CC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG-TYQNWCEAMST---YP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~-~~~~~ce~~~~---yp-~t~Dl~H~~~ 547 (636)
..+|||++||+|++|.+.++++.-| +-+|.++..+..+.+ -|+-. +...-+..|.. .+ ..||+|=+|=
T Consensus 42 g~~vLDl~~G~G~~~i~a~~~ga~v---v~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAASEGWEA---VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEE---EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeccccchhhhhhhhccchh---hhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 3489999999999999888887633 335666566665532 23311 22222233222 22 6799986643
Q ss_pred ccccCCCCcCHHHHHHHH--hhcccCCcEEEEEeC
Q 006662 548 IFSLYKDRCEMEDVLLEM--DRILRPEGSVIIRDD 580 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~ 580 (636)
=|.. +...++.++ -.+|+|||.+|+..+
T Consensus 119 PY~~-----~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYAM-----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTTS-----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccc-----CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 2221 233344443 258999999998643
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.66 E-value=0.0053 Score=57.35 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=71.2
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-----cchhhccccc----cCCCC-Ccccee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEA----MSTYP-RTYDLI 543 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~~~ce~----~~~yp-~t~Dl~ 543 (636)
....+++|++||.||++.++++. |- ..|+..|..+.++..+.+|-= +-.+|.+=.. ...++ ..+|-|
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence 44679999999999999999775 32 467888888889998887632 2223311111 12233 566655
Q ss_pred eeccccccCC----CC--cCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhc
Q 006662 544 HADSIFSLYK----DR--CEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDG 593 (636)
Q Consensus 544 H~~~~fs~~~----~~--c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~ 593 (636)
-.+==.|.++ .| -.+...|.++-++|+|||.+++-.- .-.-.-|+++++.
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 4431112221 11 2234788999999999999977432 2222445666553
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.52 E-value=0.028 Score=56.15 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=71.2
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhcc-cc-ccC------CCCCcccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNW-CE-AMS------TYPRTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~-ce-~~~------~yp~t~Dl~ 543 (636)
+.++|||+.||+|+|+.+++..+- .|+.+|.+...+..+.+- |+-..-|.+ |+ .|. ...+.||+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 467999999999999999988874 455568887777777542 342212222 22 111 123789998
Q ss_pred eeccc-cccCCC------CcCHHHHHHHHhhcccCCcEEEEE-------eCHHHHHHHHHHHhcCCCceE
Q 006662 544 HADSI-FSLYKD------RCEMEDVLLEMDRILRPEGSVIIR-------DDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 544 H~~~~-fs~~~~------~c~~~~~l~e~dRiLrPgG~~i~~-------d~~~~~~~~~~~~~~~~W~~~ 599 (636)
=+|== |+..+. +-.+..++..+-++|+|||.+++. +.....+.+.+.+......+.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 76422 322111 111234555677899999975553 122233445555666666654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.41 E-value=0.11 Score=47.76 Aligned_cols=103 Identities=18% Similarity=0.098 Sum_probs=67.7
Q ss_pred HhhccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC--------
Q 006662 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY-------- 278 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf-------- 278 (636)
+....++|+ +||-+|||. |..+..+++. +. .++.+ |.++..+++|++.|....+ +....++
T Consensus 19 ~~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~---d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t 90 (195)
T d1kola2 19 VTAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVG---DLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALL 90 (195)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHH
T ss_pred HHhCCCCCC--EEEEECcCHHHHHHHHHHHhhcccceeee---cccchhhHhhhhccccEEE---eCCCcCHHHHHHHHh
Confidence 345567777 999999997 6677777764 43 45555 7788999999988853322 2222221
Q ss_pred CCCCeeEEEecccc------cc--cccChHHHHHHHHhcccCCcEEEEEe
Q 006662 279 PSRAFDMAHCSRCL------IP--WGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 279 ~~~sFDlV~~s~~L------~h--~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
....+|+++-.-.. ++ ........+..+.+++||||.+++.+
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 23468999853221 00 01122578999999999999999986
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.26 E-value=0.065 Score=48.46 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=65.5
Q ss_pred HhhccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC------CCC
Q 006662 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YPS 280 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------f~~ 280 (636)
+....++++ +||=+|||. |.++..+++. +. .++.+ |.++..++.+++-|....+. ....... ...
T Consensus 21 ~~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~---d~~~~r~~~a~~lGa~~~i~-~~~~~~~~~v~~~t~g 94 (174)
T d1jqba2 21 ELADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIGV---GSRPICVEAAKFYGATDILN-YKNGHIEDQVMKLTNG 94 (174)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEEE---CCCHHHHHHHHHHTCSEEEC-GGGSCHHHHHHHHTTT
T ss_pred HHhCCCCCC--EEEEEcCCcchhhhhhhhhcccccccccc---cchhhhHHHHHhhCcccccc-ccchhHHHHHHHHhhc
Confidence 445566666 888899995 7888888886 54 45556 77888899998887543321 1111100 123
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..||+|+-.-.- ...+.+..+.|||||.+++.+
T Consensus 95 ~G~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 95 KGVDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp SCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred cCcceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 459998854321 245688889999999999975
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=93.22 E-value=0.065 Score=53.03 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=80.7
Q ss_pred CCcceEeeecccchhhhhhhc----CCCeEEEEecCCCCCccchHHHHhh----cc-cchhhccccccCCCC-Cccceee
Q 006662 475 GRYRNLLDMNAYLGGFAAALV----DDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQNWCEAMSTYP-RTYDLIH 544 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~~~ce~~~~yp-~t~Dl~H 544 (636)
....+|+|.+||.|+|..++. +..-.-.++...|-.+.++.++... +. ...++ ...+...+ ..||+|=
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--cccccccccccccccc
Confidence 557899999999999987764 3333345667777665555554432 11 11111 12233344 7899988
Q ss_pred eccccccCC--------------CCcCHHHH-HHHHhhcccCCcEEEE--EeC---HHHHHHHHHHHhcCCCceEEeccC
Q 006662 545 ADSIFSLYK--------------DRCEMEDV-LLEMDRILRPEGSVII--RDD---VDILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 545 ~~~~fs~~~--------------~~c~~~~~-l~e~dRiLrPgG~~i~--~d~---~~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
++-=|+... ..-++..+ +..+-+.|+|||.+++ .+. ...-.++++.+-.-++-..+.+..
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECC
Confidence 876665221 11123333 4558899999997655 221 123345666544444444444432
Q ss_pred ----CCCCCcceEEEEEec
Q 006662 605 ----NGPRQREKILFANKK 619 (636)
Q Consensus 605 ----~~~~~~~~~l~~~K~ 619 (636)
.+...+--|||.+|+
T Consensus 274 ~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred ccccCCCCCCeEEEEEECC
Confidence 223345678999985
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.12 Score=45.90 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=64.6
Q ss_pred hccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC--------CCC
Q 006662 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPS 280 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp--------f~~ 280 (636)
.+..+++ +||=+|||. |.++..+++. +. .++.+ |.++..++.|++.|....+...+ .... ...
T Consensus 22 ~~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~---d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 22 GGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVT---DLSATRLSKAKEIGADLVLQISK-ESPQEIARKVEGQLG 95 (171)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHT
T ss_pred hCCCCCC--EEEEECCCccHHHHHHHHHHcCCceEEec---cCCHHHHHHHHHhCCcccccccc-cccccccccccccCC
Confidence 3455666 899999984 5666666665 65 45555 78899999998887654333211 1100 013
Q ss_pred CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+|+|+-.-. ....+....+.+|+||.+++.+.
T Consensus 96 ~g~Dvvid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 96 CKPEVTIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceEEEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 46899886331 14678899999999999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.87 E-value=0.13 Score=46.09 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred HHHhhccCCCCCcEEEEeCCCC-cHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC-----CCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYP 279 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L-----pf~ 279 (636)
+.+.....+++ +||=+|||. |..+..+++. +.. ++.. |.++..++.+++.|....+. .+.... .+.
T Consensus 20 ~~~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~~---~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 20 CINALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAV---DIVESRLELAKQLGATHVIN-SKTQDPVAAIKEIT 93 (174)
T ss_dssp HHTTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEE---ESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHT
T ss_pred HHHhhCCCCCC--EEEEeCCCHHHhhhhhcccccccceeeee---ccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHc
Confidence 44445556666 899999983 4566666654 443 3334 66888889998887543322 111111 122
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++.||+|+-.- .....+....++++|+|.+++.+-
T Consensus 94 ~gg~D~vid~~-------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 94 DGGVNFALEST-------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp TSCEEEEEECS-------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcC-------CcHHHHHHHHhcccCceEEEEEee
Confidence 45799988532 124677899999999999999763
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=92.73 E-value=0.041 Score=52.84 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=59.1
Q ss_pred CCcceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcc---cc-hhhccccccCCCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl---i~-~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
...++|+|+|+|.|.++.+++++ .+.+... + . ++-+.+. +. +-|| .|.+-| .+|++...
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p-~---vi~~~~~~~rv~~~~gD---~f~~~p-~aD~~~l~ 145 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-----P-Q---VVENLSGSNNLTYVGGD---MFTSIP-NADAVLLK 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H-H---HHTTCCCBTTEEEEECC---TTTCCC-CCSEEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-----H-H---HHHhCcccCceEEEecC---cccCCC-CCcEEEEE
Confidence 34789999999999999999764 2344443 2 1 2222222 11 1112 233334 67999888
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCC---cEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPE---GSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPg---G~~i~~d 579 (636)
.++-.+.+. +...||-.+-+.|+|| |.++|-|
T Consensus 146 ~vLHdw~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 146 YILHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred eecccCChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 887766543 3347899999999999 6777764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.087 Score=46.89 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=63.4
Q ss_pred HhhccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEE
Q 006662 210 KLINLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAH 287 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~ 287 (636)
+....++|+ +||=+|+| .|.++..+++. +...+.+ +.+++..+++++-|....+...+........+.||+++
T Consensus 24 ~~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i~~---~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 24 RHWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAF---TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEE
T ss_pred HHhCCCCCC--EEEEeccchHHHHHHHHhhcccccchhh---ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceee
Confidence 344566666 89999987 57777888775 7666655 44555667787777654332111111112345799988
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
-.-.- ...+....+.|+|||.+++.+.
T Consensus 99 d~~g~-------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 99 NTVAA-------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ECCSS-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeeec-------chhHHHHHHHHhcCCEEEEecc
Confidence 54322 1235677899999999999753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.40 E-value=0.083 Score=46.74 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=62.1
Q ss_pred hccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCee
Q 006662 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFD 284 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L-----pf~~~sFD 284 (636)
...++++ +||=+|+| .|..+..+++. +..++.+ |.++..++.+++.|....+. ...... ....+.+|
T Consensus 23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVN-ARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEE-TTTSCHHHHHHHHHSSEEE
T ss_pred hCCCCCC--EEEEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCcccccc-ccchhHHHHHHHhhcCCcc
Confidence 4556666 88889998 46677777765 7777767 78889999998887543332 111110 01123344
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.|.+.. . ...+....+.|+|||.+++.+.
T Consensus 97 ~i~~~~-------~-~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 97 VLVTAV-------S-NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EEECCS-------C-HHHHHHHHTTEEEEEEEEECCC
T ss_pred cccccc-------c-chHHHHHHHHhcCCcEEEEEEe
Confidence 554422 1 3567889999999999999764
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.19 E-value=0.018 Score=53.27 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=68.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC-C-CccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-P-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y-p-~t~Dl~H~~~~fs~~~ 553 (636)
...+|||.+||.|+|..++.++-.-.-++...|-.+..+.... .. ...+..+... + ..||++.++--|....
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--~~----~~~~~~~~~~~~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--WA----EGILADFLLWEPGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--TE----EEEESCGGGCCCSSCEEEEEECCCCCCBS
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--cc----eeeeeehhccccccccceecccCcccccc
Confidence 3568999999999998877542000011222222212211111 00 1112222222 2 7899988876664321
Q ss_pred -------------------------CCcCHH-HHHHHHhhcccCCcEEEEEeCH-----HHHHHHHH-HHhcCCCceEEe
Q 006662 554 -------------------------DRCEME-DVLLEMDRILRPEGSVIIRDDV-----DILVKIKS-ITDGMEWEGRIA 601 (636)
Q Consensus 554 -------------------------~~c~~~-~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~-~~~~~~W~~~~~ 601 (636)
...++. ..+...-+.|+|||++.+=-+. ..-..+++ |++....++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~i~~~ 172 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYL 172 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEEEEcc
Confidence 223333 3445577899999997663111 12234444 456555443321
Q ss_pred -ccCCCCCCcceEEEEEec
Q 006662 602 -DHENGPRQREKILFANKK 619 (636)
Q Consensus 602 -~~e~~~~~~~~~l~~~K~ 619 (636)
+.-.+...+--|++.+|.
T Consensus 173 ~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 173 GEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp ESCSTTCCCCEEEEEEESS
T ss_pred hhcCCCCCCcEEEEEEEeC
Confidence 111233345677777773
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.16 E-value=0.22 Score=50.70 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=62.7
Q ss_pred cEEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHc----CCC----------------eEEEEeccccCC-
Q 006662 220 RTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALER----GVP----------------ALIGVMASIRLP- 277 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~er----g~~----------------~~~~~~d~~~Lp- 277 (636)
.+|||..||+|..+...+. .++. .+...|+++.+++.++++ +.. +.+...|...+-
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~--~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCCCC--EEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 3899999999999996655 4542 222348898888888654 221 222223322221
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
-....||+|..- ++. .+..+|....+.++.||+|.++.
T Consensus 125 ~~~~~fDvIDiD----PfG-s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCC----CCC-CcHHHHHHHHHHhccCCEEEEEe
Confidence 124579999763 333 55789999999999999999984
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.87 E-value=0.19 Score=50.83 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--------------------CCEEEEcCcCCchHHHHHHHHHcC-CCeEEEE---eccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALERG-VPALIGV---MASI 274 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------------------~v~vv~i~p~Dis~a~l~~A~erg-~~~~~~~---~d~~ 274 (636)
.-+|.|+||.+|..+..+... .+..-|+-..|.+.-......... .+..|.. +...
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 357999999999666332221 112234444555432222111111 1112222 2233
Q ss_pred cCCCCCCCeeEEEecccccccccC------------------h---------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQY------------------D---------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d------------------~---------------~~~L~el~RvLKPGG~Liis~p 321 (636)
.--||+++.|+++|+.++ ||... + ..+|+.=.+-|+|||.+++...
T Consensus 132 ~rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 334899999999999999 77532 0 1366666778999999999854
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.55 E-value=0.24 Score=44.58 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=66.5
Q ss_pred HHhhccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC------CCC
Q 006662 209 GKLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL------PYP 279 (636)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L------pf~ 279 (636)
.+....++++ +||=+|||. |.++..+++. +. .++-. |.++..++.+++-|....+........ ...
T Consensus 21 ~~~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~---d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 21 INTAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAI---DINGEKFPKAKALGATDCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp HTTSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH
T ss_pred HHhhCCCCCC--EEEEECCChHHHHHHHHHHHhCCceeeee---ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhh
Confidence 3444456666 899999996 8888888876 54 34445 677788889988876544321111100 012
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCC-cEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPG-G~Liis~p 321 (636)
.+.+|+|+-.- .....+.+..+.|+|| |.+++.+.
T Consensus 96 ~~G~d~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 96 AGGVDYSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp TSCBSEEEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred cCCCcEEEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 45689987432 1246789999999996 99999864
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.48 E-value=0.26 Score=46.47 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=36.5
Q ss_pred EEEeccccC--CCCCCCeeEEEecccc----ccc------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 268 IGVMASIRL--PYPSRAFDMAHCSRCL----IPW------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 268 ~~~~d~~~L--pf~~~sFDlV~~s~~L----~h~------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.++|...+ .++++++|+|++.--. ..| .......+.++.|+|||||.+++...
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 445554332 3678999999986532 111 11125678899999999999999764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.72 E-value=0.22 Score=47.05 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=70.7
Q ss_pred CcceEeeecccchhhhhhhcC---CC--eEEEEecCCCCCccchHHHHhhcc---cchhh-ccccccCC------CCCcc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD---DP--LWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMST------YPRTY 540 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~---~~--v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~~~~------yp~t~ 540 (636)
+.++||.+|+++|--+.+|++ .+ |++.-..|.... -..+.+-+-|+ |-+.+ +..+.+.. .+.+|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~-~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYE-LGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHH-HHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHH-HHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 378999999999977666652 22 333322221111 11222333455 22221 11122222 24689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC--------------HHH----HHHHHH----HHhcCCCce
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD--------------VDI----LVKIKS----ITDGMEWEG 598 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--------------~~~----~~~~~~----~~~~~~W~~ 598 (636)
|+|=.++ +.-.....+-..-+.|||||.+|+-+- ... .+.|++ +...=+|++
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~ 211 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEI 211 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCC
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9976643 223355666667789999999998532 111 122332 344556777
Q ss_pred EEeccCCCCCCcceEEEEEe
Q 006662 599 RIADHENGPRQREKILFANK 618 (636)
Q Consensus 599 ~~~~~e~~~~~~~~~l~~~K 618 (636)
.+.-. .+.++|++|
T Consensus 212 ~llPi------gDGl~i~~K 225 (227)
T d1susa1 212 CMLPV------GDGITICRR 225 (227)
T ss_dssp EEECS------TTCEEEECB
T ss_pred EEeec------CCeeEEEEE
Confidence 77533 367899988
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.1 Score=47.47 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=54.8
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH---hhcccchhh----ccccccCCCCCccceeeeccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY---ERGLIGTYQ----NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---eRgli~~~~----~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+|||+.||+|.+|-..++++.. .|+-+|.....+.++. +..-..-+. |.-+.+..-...||+|-+|-=|.
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 47999999999999877778763 2333344434555443 332122111 11111222337899998865443
Q ss_pred cCCCCcCHHHHHHHHh--hcccCCcEEEEE
Q 006662 551 LYKDRCEMEDVLLEMD--RILRPEGSVIIR 578 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~d--RiLrPgG~~i~~ 578 (636)
. ...+.+|--+. .+|+|+|.+|+-
T Consensus 123 ---~-~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 ---R-GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ---T-TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---c-chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2 23444333333 589999999994
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.17 E-value=0.28 Score=42.92 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=61.3
Q ss_pred hccCCCCCcEEEEeCCCC-cHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccc---cCC-CCCCCeeE
Q 006662 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RLP-YPSRAFDM 285 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~---~Lp-f~~~sFDl 285 (636)
....+++ +||=.|+|. |..+..+++. +..++.+ +.++..++++++.|....+...+.. .+. ...+.+|+
T Consensus 23 ~~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 23 TGAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp HTCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred hCCCCCC--EEEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceE
Confidence 3455666 888899984 5666666665 6766666 7788889999887754433211110 000 11334455
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|.+.. ....+....+.|+|||.+++.+-
T Consensus 98 v~~~~--------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 98 VVTAV--------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EESSC--------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EeecC--------CHHHHHHHHHHhccCCceEeccc
Confidence 54321 14678999999999999999853
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.01 E-value=0.42 Score=46.30 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchh---------------hcccc-cc---CC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTY---------------QNWCE-AM---ST 535 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~---------------~~~ce-~~---~~ 535 (636)
.+.++||-+|+|.|+.+..+.+.+.--+-+|..|. ..+.++.+ ..+.. +-.++ ++ .+
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~--~Vi~~a~~--~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~ 146 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE--DVIMVSKD--LIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 146 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH--HHHHHHHH--HTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCH--HHHHHHHH--hhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence 55899999999999999998888763344566654 46665532 11110 00000 10 11
Q ss_pred CCCccceeeeccccccCCCCcC--HHHHHHHHhhcccCCcEEEEE
Q 006662 536 YPRTYDLIHADSIFSLYKDRCE--MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 536 yp~t~Dl~H~~~~fs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.++||+|-.+- |.-...... -...+-.+.|.|+|+|.++..
T Consensus 147 -~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 147 -NRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp -CCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred -cCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 36899987643 332111111 146789999999999999884
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.69 E-value=0.28 Score=43.30 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=62.5
Q ss_pred hccCCCCCcEEEEeCCC--CcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC------CCCC
Q 006662 212 INLKDGSIRTAIDTGCG--VASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YPSR 281 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCG--tG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------f~~~ 281 (636)
....+++ +||=+||+ .|..+..+++. + ..++.+ +.++..++++++.|....+. ....+.. ...+
T Consensus 23 ~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~---~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 23 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGV---DVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESK 96 (170)
T ss_dssp TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEE---ESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTS
T ss_pred hCCCCCC--EEEEEeccccceeeeeeccccccccccccc---ccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcc
Confidence 4555665 89999973 55666666654 5 355555 67788889998877543332 1111100 1245
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.||+|+.... ....+....+.|+|||.+++.+-
T Consensus 97 ~~d~vid~~g-------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 97 GVDAVIDLNN-------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp CEEEEEESCC-------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred cchhhhcccc-------cchHHHhhhhhcccCCEEEEecc
Confidence 6999986432 24667788999999999998853
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.49 E-value=0.38 Score=42.67 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=63.7
Q ss_pred HHHhhccCCCCCcEEEEeCC--CCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC------C
Q 006662 208 IGKLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------Y 278 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------f 278 (636)
+.+...+.+++ +||=.|. |.|.++..+++. +..++.+ ..+++..+.+++.|....+. .....+. .
T Consensus 17 l~~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~~---~~~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 17 LCEVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTT---AGSDAKREMLSRLGVEYVGD-SRSVDFADEILELT 90 (183)
T ss_dssp HHTTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEE---ESSHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHT
T ss_pred HHHHhCCCCCC--EEEEECCCCCcccccchhhccccccceee---eccccccccccccccccccc-CCccCHHHHHHHHh
Confidence 34444455555 8998873 366788888776 7776665 34556678887777653332 1111110 2
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
....||+|+..-. ...+.++.++|+++|.++..+
T Consensus 91 ~~~g~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp TTCCEEEEEECCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred CCCCEEEEEeccc--------chHHHHHHHHhcCCCEEEEEc
Confidence 3467999997432 246788899999999999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.27 E-value=1.2 Score=39.06 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=61.3
Q ss_pred cCCCCCcEEEEeCCCC-cHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-----CCCCCeeE
Q 006662 214 LKDGSIRTAIDTGCGV-ASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----YPSRAFDM 285 (636)
Q Consensus 214 l~~g~~r~VLDIGCGt-G~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp-----f~~~sFDl 285 (636)
..+++ +||-+|+|. |.++..+++. + ..++.+ |.++..++.+++.+....+. ....... ...+.+|+
T Consensus 30 ~~~g~--~vli~GaG~vG~~~~~~a~~~g~~~vv~~---~~~~~k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 30 LYPGA--YVAIVGVGGLGHIAVQLLKVMTPATVIAL---DVKEEKLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEEE---ESSHHHHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEE
T ss_pred cCCCC--EEEEeCCChHHHHHHHHHHhhcCcccccc---cchhHHHHHHhhcccceeec-CcccHHHHHHHhhCCCCceE
Confidence 35555 899999984 5566666654 4 344555 67788888888877543322 1111100 12346999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+-.-. ....+....+.|++||.+++.+.
T Consensus 104 vid~~g-------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 104 AMDFVG-------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EEESSC-------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEEecC-------cchHHHHHHHHHhCCCEEEEEeC
Confidence 885332 14568899999999999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.28 Score=47.95 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=62.7
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc------c----cchhh-ccccccCCCCCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG------L----IGTYQ-NWCEAMSTYPRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg------l----i~~~~-~~ce~~~~yp~t~Dl 542 (636)
...++||-+|.|-|+.+..+.+. ++--+-+|..|. ..++++.+-- + +-+++ |--+-+..-++.||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~--~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE--DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH--HHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 45789999999999999999987 565555666665 3666654421 1 01111 111222235688999
Q ss_pred eeeccccccCCCCcCH--HHHHHHHhhcccCCcEEEEE
Q 006662 543 IHADSIFSLYKDRCEM--EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~ 578 (636)
|-++ +|.-...--.+ ...+-.+.|.|+|||.+++.
T Consensus 155 Ii~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 155 IITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 9886 34322111111 26788899999999999986
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.50 E-value=0.4 Score=47.40 Aligned_cols=141 Identities=11% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-------------~~ce~~~~yp~t~ 540 (636)
...++||-+|.|-|+.+..+.+. +|--+-+|..|.. .+.++.+- +...+ |--+-+..-++.|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~--Vv~~a~~~--~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM--VIDVAKKF--LPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH--HHHHHHHH--CTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH--HHHHHHhh--chhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 45889999999999999999986 5644555665553 55554431 11111 1001112246789
Q ss_pred ceeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcce
Q 006662 541 DLIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREK 612 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~ 612 (636)
|+|-.+.--...... ---...+-.+.|+|+|||.++..- ..+.+..+.+..++.=..+..+-. -.-|.+.-.
T Consensus 181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~ 260 (312)
T d2b2ca1 181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMG 260 (312)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEE
T ss_pred CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccce
Confidence 998875322111111 111367888999999999999962 234445555444443334433221 111112345
Q ss_pred EEEEEec
Q 006662 613 ILFANKK 619 (636)
Q Consensus 613 ~l~~~K~ 619 (636)
.++|.|.
T Consensus 261 f~~aSk~ 267 (312)
T d2b2ca1 261 YLICAKN 267 (312)
T ss_dssp EEEEESS
T ss_pred eeEEECC
Confidence 7888875
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=88.39 E-value=0.59 Score=44.74 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=58.9
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEecC----CCCCc-cchHHHHhhcccchhhccccccCCCCCccceeeeccccccC
Q 006662 479 NLLDMNAYLGGFAAALVDD-PLWVMNTVP----VEAKI-NTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY 552 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~----~~~~~-~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~ 552 (636)
+|+|+|||-||+.-+++++ +| +.|.. .+.++ ......+-.+++...- =..-|..-|.-.|+|-||--=|.
T Consensus 69 ~vvDlG~~pGgws~~~a~~~~v--~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~-~~dv~~l~~~~~D~vlcDm~ess- 144 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLKNV--REVKGLTKGGPGHEEPIPMSTYGWNLVRLQS-GVDVFFIPPERCDTLLCDIGESS- 144 (257)
T ss_dssp EEEEETCTTSHHHHHHHTSTTE--EEEEEECCCSTTSCCCCCCCSTTGGGEEEEC-SCCTTTSCCCCCSEEEECCCCCC-
T ss_pred eEEEecCCCChHHHHHHhhcCC--CceeEEEecCccccCCccccccccccccchh-hhhHHhcCCCcCCEEEeeCCCCC-
Confidence 6899999999999999876 34 23332 22221 1222222333332110 00011112477888888643221
Q ss_pred CCCcCHH-----HHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHh
Q 006662 553 KDRCEME-----DVLLEMDRILRPEGSVIIRD----DVDILVKIKSITD 592 (636)
Q Consensus 553 ~~~c~~~-----~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~ 592 (636)
..-.++ .+|-=+.++|+|||.|++-- ..+++++|+.+-.
T Consensus 145 -~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~ 192 (257)
T d2p41a1 145 -PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR 192 (257)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred -CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHH
Confidence 111122 44444568999999999972 4567766666543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=87.76 E-value=0.89 Score=44.40 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=78.2
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-------------~~ce~~~~yp~t~ 540 (636)
...++||=+|.|-|+.+..+.+. ++--+-+|..|. ..++++.+- ++..+ |.-+-....++.|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp--~Vi~~a~~~--~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 163 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG--LVIEAARKY--LKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 163 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH--HHHHHHHHH--CHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHH--HHhhcccccCCCcEEEhhhHHHHHhcCCCCC
Confidence 45899999999999999999886 453344555554 356655442 11111 1112234457889
Q ss_pred ceeeeccccccCCCCcC--HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcc
Q 006662 541 DLIHADSIFSLYKDRCE--MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQRE 611 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~ 611 (636)
|+|-++..-......+. -...+-.+-|.|+|||.++..- ..+.+..+.+.+++.=-.+...-. -.-+.+.-
T Consensus 164 DvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w 243 (295)
T d1inla_ 164 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMW 243 (295)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEE
T ss_pred CEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCccc
Confidence 99987633221111111 2578889999999999999852 222333333332332222322111 11122345
Q ss_pred eEEEEEecC
Q 006662 612 KILFANKKY 620 (636)
Q Consensus 612 ~~l~~~K~~ 620 (636)
.+++|.|..
T Consensus 244 ~f~~aSk~~ 252 (295)
T d1inla_ 244 SYTFASKGI 252 (295)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 788888864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.64 E-value=0.77 Score=40.85 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=68.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCC--CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc----C-CC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCG--VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----L-PY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCG--tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~----L-pf 278 (636)
.+.+....++|+ +||=.|++ .|..+..+++. +..++.+ ..+++..+.+++.+....+...+... + -.
T Consensus 20 al~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~vi~~---~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 20 GLLEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGA---AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp HHHTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE---ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred HHHHHhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEEEEe---CCCHHHHHHHHhhhhhhhcccccccHHHHHHHHh
Confidence 445555666666 89988875 45778888876 7888777 55677788888877654443211110 0 01
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+.+|+|+-.- - ...+.+..+.|+|||.+++.+
T Consensus 95 ~~~Gvd~v~D~v-------G-~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNV-------G-GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESS-------C-HHHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEEec-------C-chhhhhhhhhccCCCeEEeec
Confidence 345699998532 1 357889999999999999975
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=87.31 E-value=0.15 Score=46.50 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=57.2
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc---hhhccccccCC-C---CCccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMST-Y---PRTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~---~~~~~ce~~~~-y---p~t~Dl~H 544 (636)
...+|||+.||+|++|-..++++. ..|+-+|.+...+.++.+- |+.. +++.-+..+.. + -..||+|=
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 357899999999999998888875 3444456655566665432 3322 22211111111 1 24799987
Q ss_pred eccccccCCCCcCHHHHHHHHh--hcccCCcEEEEE
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMD--RILRPEGSVIIR 578 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~ 578 (636)
+|==|. .-..+.+|-.+. .+|.|+|.+|+-
T Consensus 119 lDPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 743321 123445554443 489999999984
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=87.26 E-value=0.22 Score=47.82 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=54.5
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHH---HHHHHHHc----C-------CCeEEEEec
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEA---QVQFALER----G-------VPALIGVMA 272 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a---~l~~A~er----g-------~~~~~~~~d 272 (636)
.|.+.+.++.+...+|||.-||.|..+..|+..+..++.+ +-++. +++.+.++ . ..+.+..+|
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~i---Er~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML---ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEE---ECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEE---ccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 4555666666655589999999999999999998777777 44433 23322222 1 135677777
Q ss_pred ccc-CCCCCCCeeEEEecccc
Q 006662 273 SIR-LPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L 292 (636)
... +.-....||+|+.--.+
T Consensus 154 s~~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCC
T ss_pred HHHHHhccCCCCCEEEECCCC
Confidence 543 33345679999986555
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=85.53 E-value=3.4 Score=39.52 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=81.6
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc-----c-----cchhh-ccccccCCCCCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG-----L-----IGTYQ-NWCEAMSTYPRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg-----l-----i~~~~-~~ce~~~~yp~t~Dl 542 (636)
...++||-+|.|-|+.++.+.++ ++--+.+|..|.. .++++.+-- . +-++. |--+-....++.||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~--Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK--VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH--HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH--HHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 45789999999999999999886 5655566776654 555554321 0 00111 111122334688999
Q ss_pred eeeccccccCCCCcC--HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccCCCC--CCcceE
Q 006662 543 IHADSIFSLYKDRCE--MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENGP--RQREKI 613 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~~--~~~~~~ 613 (636)
|-.+. +.-....-. -...+-.+-|.|+|+|.++..- ..+.+..+.+.++..=-.+...-..--+ .+...+
T Consensus 152 Ii~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f 230 (274)
T d1iy9a_ 152 IMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (274)
T ss_dssp EEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEE
Confidence 98763 321111111 1367778999999999999852 2344455555444443344433221111 123467
Q ss_pred EEEEecC
Q 006662 614 LFANKKY 620 (636)
Q Consensus 614 l~~~K~~ 620 (636)
++|.|.+
T Consensus 231 ~~aS~~~ 237 (274)
T d1iy9a_ 231 TIGSKKY 237 (274)
T ss_dssp EEEESSC
T ss_pred EEEcCCC
Confidence 7788764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=85.50 E-value=0.97 Score=39.74 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=66.0
Q ss_pred HHHhhccCCCCCcEEEEeCCC--CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-------
Q 006662 208 IGKLINLKDGSIRTAIDTGCG--VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------- 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCG--tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------- 277 (636)
+.+...+++++ +||=.|+| .|.++..+++. +..++.+ +.+++..+.+++.|....+ +....+
T Consensus 20 l~~~~~l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~---~~s~~k~~~~~~lGa~~vi---~~~~~d~~~~v~~ 91 (179)
T d1qora2 20 LRKTYEIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIGT---VGTAQKAQSALKAGAWQVI---NYREEDLVERLKE 91 (179)
T ss_dssp HHTTSCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEEEE---ESSHHHHHHHHHHTCSEEE---ETTTSCHHHHHHH
T ss_pred HHHHhCCCCCC--EEEEEccccccchHHHHHHHHhCCeEeec---ccchHHHHHHHhcCCeEEE---ECCCCCHHHHHHH
Confidence 33444455665 89998766 56888888876 7777777 7788888888888855333 222222
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 278 -YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 -f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.....+|+|+..-.- ..+......|+++|.+++.+
T Consensus 92 ~t~g~g~d~v~d~~g~--------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 92 ITGGKKVRVVYDSVGR--------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HTTTCCEEEEEECSCG--------GGHHHHHHTEEEEEEEEECC
T ss_pred HhCCCCeEEEEeCccH--------HHHHHHHHHHhcCCeeeecc
Confidence 134679998864322 35678899999999988764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.24 E-value=0.82 Score=44.52 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=63.3
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhc--c--------cchh-hccccccCCCC-Cccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERG--L--------IGTY-QNWCEAMSTYP-RTYD 541 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRg--l--------i~~~-~~~ce~~~~yp-~t~D 541 (636)
...++||=+|.|-|+.+.++.+. ++-.+-+|..|.. .+.++.+-- . +-++ .|--+-+...+ +.||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~--Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM--VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHH--HHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 45789999999999999999886 6644556666653 555553311 0 0011 11112233455 5899
Q ss_pred eeeeccccccCC--CCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 542 LIHADSIFSLYK--DRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 542 l~H~~~~fs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+|-.+ +|.-.. ...--...+-.+.|+|+|||.++..
T Consensus 157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 98864 333211 1111247888999999999999995
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=83.82 E-value=0.25 Score=44.03 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=59.2
Q ss_pred hccCCCCCcEEEEeCC-C-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEe
Q 006662 212 INLKDGSIRTAIDTGC-G-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288 (636)
Q Consensus 212 L~l~~g~~r~VLDIGC-G-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~ 288 (636)
....+++ +||=.|. | .|.++..+++. |..++.+ +.+++..+.+++.|....+...+....--..+.+|+|+-
T Consensus 23 ~~~~~g~--~VlI~ga~G~vG~~aiqlak~~G~~vi~~---~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 23 AQARPGE--KVLVQAAAGALGTAAVQVARAMGLRVLAA---ASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCCTTC--EEEESSTTBHHHHHHHHHHHHTTCEEEEE---ESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE
T ss_pred hCCCCCC--EEEEEeccccchhhhhhhhcccccccccc---cccccccccccccccceeeehhhhhhhhhcccccccccc
Confidence 4556666 8999885 3 46778778776 7777666 445566677777776543321111100012356999885
Q ss_pred cccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. . . ..+....+.|+|||.+++.+
T Consensus 98 ~--~-G------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 V--R-G------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp C--S-C------TTHHHHHTTEEEEEEEEEC-
T ss_pred c--c-c------hhHHHHHHHHhcCCcEEEEe
Confidence 2 2 1 13567789999999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.44 E-value=0.91 Score=40.77 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=58.0
Q ss_pred cEEEEeCC--CCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecc--c-cCCCCCCCeeEEEeccccc
Q 006662 220 RTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS--I-RLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGC--GtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~--~-~Lpf~~~sFDlV~~s~~L~ 293 (636)
.+||=.|. |.|.++..|++. +..++.... +++..+.+++.|....+..-+. + ......+.+|+|+-+-.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~---s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg-- 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTG---KAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG-- 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST--
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecC---chHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC--
Confidence 37999885 466899999876 777666633 3444566666665433321111 0 11224567999886432
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+.+..+.|+|||.++..++
T Consensus 108 ------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 108 ------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp ------TTTHHHHHHTEEEEEEEEECSC
T ss_pred ------chhHHHHHHHhCCCceEEEeec
Confidence 2357899999999999999865
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.53 E-value=1.5 Score=38.99 Aligned_cols=103 Identities=14% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHhhccCCCCCcEEEEeCCCC-cHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC------C
Q 006662 208 IGKLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------Y 278 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp------f 278 (636)
+.+....++++ +||=+|||. |.++..+++. + ..++.+ |.+++.++.|++.|....+-..+..... .
T Consensus 21 v~~~~~~~~g~--tVlI~G~GgvGl~ai~~ak~~G~~~Vi~v---d~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~ 95 (176)
T d1d1ta2 21 AVKTGKVKPGS--TCVVFGLGGVGLSVIMGCKSAGASRIIGI---DLNKDKFEKAMAVGATECISPKDSTKPISEVLSEM 95 (176)
T ss_dssp HHTTSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCC--EEEEECCCchhHHHHHHHHHcCCceEEEe---cCcHHHHHHHHhcCCcEEECccccchHHHHHHHHh
Confidence 33444455666 899999984 5566666655 5 456667 8888999999998865444211111100 1
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+.+|+|+-.- ..+..+...+..+++++|.+++.+.
T Consensus 96 ~g~G~d~vi~~~------g~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 96 TGNNVGYTFEVI------GHLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp HTSCCCEEEECS------CCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred ccccceEEEEeC------CchHHHHHHHHHhhcCCeEEEEEEc
Confidence 235688877432 1222333444555566699999863
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.08 E-value=1.2 Score=43.81 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhccCC----CCCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc--CCCeEEEEecc
Q 006662 202 DAYIDDIGKLINLKD----GSIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER--GVPALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~----g~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er--g~~~~~~~~d~ 273 (636)
...++.|.+.+.+.+ ....+|||||.|.|.++..|++. +. .++.+ +.++...+...+. +.+..+...|.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~i---E~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLL---EKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEE---CCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHhccCCCcEEEeCch
Confidence 345667777665432 23458999999999999999876 32 44455 5565666555443 23455655554
Q ss_pred c
Q 006662 274 I 274 (636)
Q Consensus 274 ~ 274 (636)
.
T Consensus 100 l 100 (322)
T d1i4wa_ 100 Y 100 (322)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.81 E-value=1.8 Score=40.91 Aligned_cols=121 Identities=9% Similarity=-0.062 Sum_probs=73.4
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCC----CC-Ccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMST----YP-RTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~----yp-~t~ 540 (636)
....+|||+|||.|.-+..|+.+ += .+++.+|-++..+.++.+- +| +-++| +|-+.+.. .. ..|
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~--~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNG--WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred cccceEEEeCCCchHHHHHHHHhCCC--ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence 45789999999999999988764 22 2566677766677776553 22 22333 22222211 12 579
Q ss_pred ceeeeccccccCC----------------------CC----------cCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHH
Q 006662 541 DLIHADSIFSLYK----------------------DR----------CEMEDVLLEMDRILRPEGSVIIRD-DVDILVKI 587 (636)
Q Consensus 541 Dl~H~~~~fs~~~----------------------~~----------c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~ 587 (636)
|+|=|+-=|=... .. ..+..++.|--+.++..|++..-- ..+.+..|
T Consensus 138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i 217 (250)
T d2h00a1 138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPL 217 (250)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHH
T ss_pred eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHH
Confidence 9877654431000 00 014467788888899999985432 34566777
Q ss_pred HHHHhcCCCc
Q 006662 588 KSITDGMEWE 597 (636)
Q Consensus 588 ~~~~~~~~W~ 597 (636)
+++++.....
T Consensus 218 ~~~L~~~g~~ 227 (250)
T d2h00a1 218 KEELRIQGVP 227 (250)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 7777777763
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.63 E-value=2.6 Score=37.13 Aligned_cols=101 Identities=14% Similarity=0.030 Sum_probs=60.4
Q ss_pred HHHhhccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC------CC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL------PY 278 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L------pf 278 (636)
+.+....++++ +||=+|||. |.++..+++. +. .++.+ |.++..++.+++.|....+...+.... ..
T Consensus 19 ~~~~a~~~~G~--~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~---d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 19 AVNTAKVTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIGV---GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp HHTTTCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEE---CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCC--EEEEECCCchhHHHHHHHHHcCCceeecc---CChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHh
Confidence 33444566666 999999984 4555556654 54 45555 778888999988875544321111100 01
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhccc-CCcEEEEEe
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR-PGGYWILSG 320 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK-PGG~Liis~ 320 (636)
..+.+|+|+-.-. . ...+.+....++ ++|.+++.+
T Consensus 94 ~~~G~d~vid~~g------~-~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 94 TNGGVDYAVECAG------R-IETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp TTSCBSEEEECSC------C-HHHHHHHHHTBCTTTCEEEECC
T ss_pred cCCCCcEEEEcCC------C-chHHHHHHHHHHHhcCceEEEE
Confidence 2346888875321 1 345566666555 569999876
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.92 E-value=1.4 Score=43.23 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=53.2
Q ss_pred CCcceEeeecccchhhhhhhc----CCCeEEEEecCCCCCccchHHHHhh-cccchh--hccccccCCCCCccceee---
Q 006662 475 GRYRNLLDMNAYLGGFAAALV----DDPLWVMNTVPVEAKINTLGVIYER-GLIGTY--QNWCEAMSTYPRTYDLIH--- 544 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~~~eR-gli~~~--~~~ce~~~~yp~t~Dl~H--- 544 (636)
.....||||.||-||=+.+|+ .....+.|=.-. .....+.-.++| |+..+. ++--..+..++..||.|-
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~-~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE-NRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH-HHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCH-HHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 345689999999999544443 344444332221 111233222333 443222 211122233457899755
Q ss_pred -ec--cccccC-----C-CCcCHH-------HHHHHHhhcccCCcEEEEE
Q 006662 545 -AD--SIFSLY-----K-DRCEME-------DVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 545 -~~--~~fs~~-----~-~~c~~~-------~~l~e~dRiLrPgG~~i~~ 578 (636)
|+ |++... . ..-++. .||...-+.|||||++|.+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 33 333211 0 111111 7889999999999999997
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=7.5 Score=37.72 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHH---hh-cc--cchhhccc-cccCCC---CCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIY---ER-GL--IGTYQNWC-EAMSTY---PRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~---eR-gl--i~~~~~~c-e~~~~y---p~t~Dl 542 (636)
.....|||+-||+|.|+..|+++ .|+.+-..+ ..+..+. ++ |+ +-.++.=- +.+... ...||+
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~-----~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~ 285 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP-----ALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 285 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCH-----HHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSE
T ss_pred CCCceEEEecccccccchhccccccEEEeccCcH-----HHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCce
Confidence 44678999999999999999886 344443333 3333322 22 33 11222111 222222 256787
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCceE---EeccCCCCCCcceEEEEEe
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 618 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 618 (636)
|=. . ..|..+..++.++-+ ++|.-.++++=+.. ...-++.+.+ -.|++. .+|--..+..=|-|.+..|
T Consensus 286 vil----D--PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l~~i~~~D~FP~T~HvE~v~~l~R 357 (358)
T d1uwva2 286 VLL----D--PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTGHLESMVLFSR 357 (358)
T ss_dssp EEE----C--CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred EEe----C--CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeEEEEEecCCCCccEEEEEEEEe
Confidence 644 1 234444566666655 48999999995554 4455655544 246554 5566655555576666544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=1.3 Score=42.78 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCcceEeeecccchhhhhhhcC---CC-eEEEEecCCCCCccchHHHHh-hcc---cchhhccccccCCCCCccceeee-
Q 006662 475 GRYRNLLDMNAYLGGFAAALVD---DP-LWVMNTVPVEAKINTLGVIYE-RGL---IGTYQNWCEAMSTYPRTYDLIHA- 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~---~~-v~~mnv~~~~~~~~~l~~~~e-Rgl---i~~~~~~ce~~~~yp~t~Dl~H~- 545 (636)
....+||||.|+-||=..+|++ .+ |+..-+.+.-. ..+.-.++ -|+ +-+.++....-...+..||.|-+
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~--~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL--SRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH--HHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh--hhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 5577999999999998877654 22 33322222222 22322332 233 11111111111123478997663
Q ss_pred -----ccccccC------CCCcCHH-------HHHHHHhhcccCCcEEEEE
Q 006662 546 -----DSIFSLY------KDRCEME-------DVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 546 -----~~~fs~~------~~~c~~~-------~~l~e~dRiLrPgG~~i~~ 578 (636)
.|++..- ...-++. .||-..-+.|||||++|.+
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3444311 0111111 7888999999999999997
|