Citrus Sinensis ID: 006706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEcccccccccccccccHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHcc
cccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEccccccccEEEcccccHHHHHccccEEEEcccccHHHHcccccccccccEEEEEEccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEccccccHHHHHHHccc
mescdcidtqwppdeLLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTlgleecalwmpsrtglnlELSYTLNnqiqigssvpinlpivtdvfnsaqamrlpyncplARIRLLvgryvppdivAVRVpllhlsnfqindwpelpakSYAVMVLMLptdggrkwrdHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLlletdltpeQRVMIETVLKSSNLLTTLVDdvldlsrledgsleldngpfNLQIVLREVIKLIKPVASCKKLSMTlimapelptyavgdeKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrppefypvstdghFYLRVQvndsgcgvppqdipLLFTKFAqsrgsscqtpragLGLAICRRFVNLMgghiwldsegldkgstVTFLVKLgicnnpgspihpvalkgrashgsadltgpkplfrdndqiastksryqrsv
mescdcidtqwppDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRadeldremgliltqeetgrhvrMLTHEirstldrhtiLKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVlkssnlltTLVDDVLDLSRLEDgsleldngpFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGsadltgpkplfrdndqiastksryqrsv
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNllttlvddvldlSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE**************************IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPI****************************************
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADEL**********EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAK************YPVSTDGHFYLRVQVNDSG*******************************LAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI*************************GPKPLFRDNDQIASTKSRYQRS*
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ********PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIA**********
**SCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKP*****WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNN*******************DLTGPKPLFRDNDQIASTKSRYQRSV
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDxxxxxxxxxxxxxxxxxxxxxxxxxIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query634 2.2.26 [Sep-21-2011]
Q38846613 Ethylene response sensor yes no 0.944 0.977 0.741 0.0
O81122 741 Ethylene receptor OS=Malu N/A no 0.992 0.848 0.692 0.0
Q9ZWL6 738 Ethylene receptor OS=Pass N/A no 0.984 0.845 0.702 0.0
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.992 0.85 0.697 0.0
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.992 0.848 0.696 0.0
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.992 0.85 0.696 0.0
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 0.979 0.841 0.697 0.0
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.984 0.843 0.689 0.0
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.982 0.826 0.680 0.0
O48929 738 Ethylene receptor OS=Nico N/A no 0.973 0.836 0.678 0.0
>sp|Q38846|ERS1_ARATH Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/600 (74%), Positives = 522/600 (87%), Gaps = 1/600 (0%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct: 1   MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct: 61  FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct: 121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct: 181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct: 241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct: 301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AII+LSSLLLET+L+PEQRVMIET+LKSSNL+ TL+ DVLDLSRLEDGSL L+N PF+LQ
Sbjct: 361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
            +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct: 421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-G 539
           SIIAS+ KPESL +   PEF+PV +D HFYL VQV D+GCG+  QDIPLLFTKF Q R G
Sbjct: 481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTG 540

Query: 540 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVAL 599
           +       GLGLA+C+RFV LMGG++W++SEGL+KG T +F+++LGICN P S    +AL
Sbjct: 541 TQRNHSGGGLGLALCKRFVGLMGGYMWIESEGLEKGCTASFIIRLGICNGPSSSSGSMAL 600
Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|O48929|ETR1_TOBAC Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query634
283520948634 ethylene response sensor 1 [Citrus hybri 1.0 1.0 0.998 0.0
4092526634 putative ethylene receptor [Citrus sinen 1.0 1.0 0.990 0.0
224068380636 ethylene receptor 1 [Populus trichocarpa 1.0 0.996 0.812 0.0
237769861636 ethylene receptor [Dimocarpus longan] gi 0.998 0.995 0.798 0.0
225437449636 PREDICTED: ethylene receptor 2 [Vitis vi 1.0 0.996 0.792 0.0
255564264636 ethylene receptor, putative [Ricinus com 1.0 0.996 0.797 0.0
82471111632 ERS type ethylene receptor [Ziziphus juj 0.995 0.998 0.798 0.0
11935116634 ethylene receptor [Carica papaya] 0.995 0.995 0.796 0.0
163639425629 ethylene receptor ERS1b [Actinidia delic 0.988 0.996 0.779 0.0
326534419629 ERS1 [Mangifera indica] 0.990 0.998 0.788 0.0
>gi|283520948|gb|ADB25216.1| ethylene response sensor 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1305 bits (3378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/634 (99%), Positives = 634/634 (100%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS
Sbjct: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL
Sbjct: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA
Sbjct: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG
Sbjct: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA
Sbjct: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH
Sbjct: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ
Sbjct: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420

Query: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
           IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV
Sbjct: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480

Query: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540
           SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS
Sbjct: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540

Query: 541 SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 600
           SCQTPRAGLGLAICRRFVNLMGGHIWL+SEGLDKGSTVTFLVKLGICNNPGSPIHPVALK
Sbjct: 541 SCQTPRAGLGLAICRRFVNLMGGHIWLESEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 600

Query: 601 GRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV 634
           GRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
Sbjct: 601 GRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV 634

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4092526|gb|AAC99435.1| putative ethylene receptor [Citrus sinensis] Back     alignment and taxonomy information
>gi|224068380|ref|XP_002302732.1| ethylene receptor 1 [Populus trichocarpa] gi|222844458|gb|EEE82005.1| ethylene receptor 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|237769861|gb|ACL81481.3| ethylene receptor [Dimocarpus longan] gi|264683475|gb|ACY72568.1| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|225437449|ref|XP_002272649.1| PREDICTED: ethylene receptor 2 [Vitis vinifera] gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564264|ref|XP_002523129.1| ethylene receptor, putative [Ricinus communis] gi|223537691|gb|EEF39314.1| ethylene receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|82471111|gb|ABB77561.1| ERS type ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|11935116|gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya] Back     alignment and taxonomy information
>gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|326534419|gb|ADZ76430.1| ERS1 [Mangifera indica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query634
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.944 0.977 0.728 1.8e-236
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.998 0.996 0.696 3.1e-234
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.982 0.826 0.666 5.6e-219
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.977 0.840 0.660 9.6e-215
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.903 0.741 0.386 2.4e-92
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.976 0.808 0.341 1.3e-86
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.899 0.883 0.341 1.7e-75
UNIPROTKB|P0AEC5 918 barA [Escherichia coli K-12 (t 0.405 0.279 0.36 8.6e-32
TIGR_CMR|GSU_0718 589 GSU_0718 "sensory box histidin 0.454 0.488 0.333 9.4e-31
UNIPROTKB|Q4K894 917 gacS "Sensor protein GacS" [Ps 0.378 0.261 0.346 1.5e-30
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2280 (807.7 bits), Expect = 1.8e-236, P = 1.8e-236
 Identities = 437/600 (72%), Positives = 512/600 (85%)

Query:     1 MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
             MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct:     1 MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query:    61 FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
             FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct:    61 FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query:   121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
             FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct:   121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query:   181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
             LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct:   181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query:   241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
             RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct:   241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query:   301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
             DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct:   301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query:   361 AIIALSSLLLETDLTPEQRVMIETVLKSSNXXXXXXXXXXXXSRLEDGSLELDNGPFNLQ 420
             AII+LSSLLLET+L+PEQRVMIET+LKSSN            SRLEDGSL L+N PF+LQ
Sbjct:   361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query:   421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
              +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct:   421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query:   481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-G 539
             SIIAS+ KPESL +   PEF+PV +D HFYL VQV D+GCG+  QDIPLLFTKF Q R G
Sbjct:   481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTG 540

Query:   540 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVAL 599
             +       GLGLA+C+RFV LMGG++W++SEGL+KG T +F+++LGICN P S    +AL
Sbjct:   541 TQRNHSGGGLGLALCKRFVGLMGGYMWIESEGLEKGCTASFIIRLGICNGPSSSSGSMAL 600
GO:0004673 "protein histidine kinase activity" evidence=ISS;TAS
GO:0007165 "signal transduction" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA
GO:0051740 "ethylene binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0718 GSU_0718 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K894 gacS "Sensor protein GacS" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XH57ETR2_PELHO2, ., 7, ., 1, 3, ., 30.69680.99210.8488N/Ano
O48929ETR1_TOBAC2, ., 7, ., 1, 3, ., 30.67850.97310.8360N/Ano
Q9XH58ETR1_PELHO2, ., 7, ., 1, 3, ., 30.68960.98420.8432N/Ano
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.74160.94470.9771yesno
Q9M7M1ETR1_PRUPE2, ., 7, ., 1, 3, ., 30.69770.97940.8414N/Ano
O49187ETR2_SOLLC2, ., 7, ., 1, 3, ., 30.66230.97310.8383N/Ano
Q41342ETR1_SOLLC2, ., 7, ., 1, 3, ., 30.68050.98260.8262N/Ano
O81122ETR1_MALDO2, ., 7, ., 1, 3, ., 30.69200.99210.8488N/Ano
Q9ZWL6ETR1_PASED2, ., 7, ., 1, 3, ., 30.70240.98420.8455N/Ano
O49230ETR1_BRAOL2, ., 7, ., 1, 3, ., 30.67730.97310.8394N/Ano
O82436ETR1_CUCMN2, ., 7, ., 1, 3, ., 30.69790.99210.85N/Ano
Q9SSY6ETR1_CUCSA2, ., 7, ., 1, 3, ., 30.69630.99210.85N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.983
3rd Layer2.7.13.30.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 1e-50
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 4e-48
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 3e-41
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 2e-38
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 1e-33
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 2e-31
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 3e-27
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 4e-27
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 6e-26
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 2e-23
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 5e-23
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 4e-22
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 7e-21
COG5002459 COG5002, VicK, Signal transduction histidine kinas 1e-19
pfam01590143 pfam01590, GAF, GAF domain 6e-18
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 4e-17
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 2e-15
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 2e-15
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 7e-15
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 6e-14
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 7e-14
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 7e-13
PRK10490895 PRK10490, PRK10490, sensor protein KdpD; Provision 1e-12
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 2e-12
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 4e-11
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 9e-11
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 3e-10
PRK10618 894 PRK10618, PRK10618, phosphotransfer intermediate p 8e-10
smart00065149 smart00065, GAF, Domain present in phytochromes an 1e-09
PRK13837 828 PRK13837, PRK13837, two-component VirA-like sensor 7e-09
TIGR02916679 TIGR02916, PEP_his_kin, putative PEP-CTERM system 1e-08
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 1e-07
PRK10604433 PRK10604, PRK10604, sensor protein RstB; Provision 3e-07
COG4192673 COG4192, COG4192, Signal transduction histidine ki 7e-07
COG3852363 COG3852, NtrB, Signal transduction histidine kinas 8e-07
PRK09467435 PRK09467, envZ, osmolarity sensor protein; Provisi 1e-05
pfam13492129 pfam13492, GAF_3, GAF domain 3e-05
TIGR02938494 TIGR02938, nifL_nitrog, nitrogen fixation negative 4e-05
COG3290537 COG3290, CitA, Signal transduction histidine kinas 3e-04
TIGR03785703 TIGR03785, marine_sort_HK, proteobacterial dedicat 4e-04
COG4191603 COG4191, COG4191, Signal transduction histidine ki 4e-04
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 6e-04
PRK09470461 PRK09470, cpxA, two-component sensor protein; Prov 0.002
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information 
 Score =  188 bits (481), Expect = 1e-50
 Identities = 105/289 (36%), Positives = 158/289 (54%), Gaps = 33/289 (11%)

Query: 324 ME-QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMI 382
           ME QNV LD A++ A++A   +++F A M+HE+RT ++ +I  +   L+T LTP QR  +
Sbjct: 272 MEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYL 331

Query: 383 ETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMT 442
           +T+ +S+N L  +++D+LD S+LE G L L+N PF+L+  L EV+ L+   A  K L +T
Sbjct: 332 QTIERSANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELT 391

Query: 443 LIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502
           L + P++P   +GD  RL Q I N+VGNA+KFT+ G  +I   V                
Sbjct: 392 LNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESG--NIDILVELRA------------ 437

Query: 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ-----SR---GSSCQTPRAGLGLAIC 554
             ++    L VQ+ D+G G+  +    LF  F Q     SR   G+       GLGL I 
Sbjct: 438 -LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGT-------GLGLVIT 489

Query: 555 RRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPV-ALKGR 602
           ++ VN MGG I   S+  ++GST  F + L +  NP     P   L G+
Sbjct: 490 QKLVNEMGGDISFHSQ-PNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGK 537

Length = 919
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional Back     alignment and domain information
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 634
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
PRK10618 894 phosphotransfer intermediate protein in two-compon 100.0
PRK13837 828 two-component VirA-like sensor kinase; Provisional 100.0
PRK10841 924 hybrid sensory kinase in two-component regulatory 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK09959 1197 hybrid sensory histidine kinase in two-component r 100.0
COG4251750 Bacteriophytochrome (light-regulated signal transd 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
COG4191603 Signal transduction histidine kinase regulating C4 99.97
PRK10604433 sensor protein RstB; Provisional 99.97
PRK10364457 sensor protein ZraS; Provisional 99.97
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.97
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.97
PRK10815485 sensor protein PhoQ; Provisional 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.96
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.96
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.96
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.95
PRK13557 540 histidine kinase; Provisional 99.95
PRK09835482 sensor kinase CusS; Provisional 99.95
PRK09470461 cpxA two-component sensor protein; Provisional 99.95
PRK10337449 sensor protein QseC; Provisional 99.95
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.95
PRK11100475 sensory histidine kinase CreC; Provisional 99.95
PRK09467435 envZ osmolarity sensor protein; Provisional 99.95
COG5000712 NtrY Signal transduction histidine kinase involved 99.95
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.95
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.94
PRK11360607 sensory histidine kinase AtoS; Provisional 99.94
PRK11644495 sensory histidine kinase UhpB; Provisional 99.93
KOG0519786 consensus Sensory transduction histidine kinase [S 99.93
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.93
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.93
PRK13560807 hypothetical protein; Provisional 99.92
COG4192673 Signal transduction histidine kinase regulating ph 99.91
PRK11086542 sensory histidine kinase DcuS; Provisional 99.88
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.87
COG3290537 CitA Signal transduction histidine kinase regulati 99.87
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.85
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.82
PRK13559361 hypothetical protein; Provisional 99.82
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.8
COG4585365 Signal transduction histidine kinase [Signal trans 99.78
PRK10547670 chemotaxis protein CheA; Provisional 99.72
COG4564459 Signal transduction histidine kinase [Signal trans 99.69
COG3920221 Signal transduction histidine kinase [Signal trans 99.59
COG0643716 CheA Chemotaxis protein histidine kinase and relat 99.57
COG3275557 LytS Putative regulator of cell autolysis [Signal 99.56
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.48
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.46
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.27
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.25
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.25
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.24
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.21
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.2
COG2972456 Predicted signal transduction protein with a C-ter 99.18
PRK03660146 anti-sigma F factor; Provisional 99.17
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.17
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.12
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.09
PRK04069161 serine-protein kinase RsbW; Provisional 99.04
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 98.96
TIGR01817534 nifA Nif-specific regulatory protein. This model r 98.88
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.83
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.77
COG3605 756 PtsP Signal transduction protein containing GAF an 98.64
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.61
PF14501100 HATPase_c_5: GHKL domain 98.61
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.6
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.49
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.37
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.3
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.3
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 98.22
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.18
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 98.03
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 98.03
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 97.89
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 97.74
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 97.45
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 97.42
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.38
PRK13558665 bacterio-opsin activator; Provisional 97.24
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 96.32
PRK05218 613 heat shock protein 90; Provisional 96.03
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 95.81
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 95.78
PRK14083 601 HSP90 family protein; Provisional 95.4
PRK05644 638 gyrB DNA gyrase subunit B; Validated 95.36
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 95.27
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 94.94
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 94.81
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 94.66
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 94.25
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 94.12
COG5385214 Uncharacterized protein conserved in bacteria [Fun 93.64
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 93.55
COG5381184 Uncharacterized protein conserved in bacteria [Fun 93.31
PTZ00130 814 heat shock protein 90; Provisional 93.25
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 92.57
COG1956163 GAF domain-containing protein [Signal transduction 92.37
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 89.19
COG4251 750 Bacteriophytochrome (light-regulated signal transd 88.99
PF10090182 DUF2328: Uncharacterized protein conserved in bact 88.6
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 88.14
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 86.54
PLN03237 1465 DNA topoisomerase 2; Provisional 85.96
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 85.29
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 83.3
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 81.08
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 80.83
PLN03128 1135 DNA topoisomerase 2; Provisional 80.05
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-46  Score=391.68  Aligned_cols=391  Identities=22%  Similarity=0.327  Sum_probs=312.5

Q ss_pred             HHHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccc
Q 006706          122 LKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI  201 (634)
Q Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~  201 (634)
                      ..+++.+++++....++++++.+.++++++.+..+...+.++..+.+++.++++. ++.+++++.++....+  ...+. 
T Consensus       488 t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~~~~-~v~i~l~~~~~~~~~~--~~~~~-  563 (890)
T COG2205         488 TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASLLNQ-RVVILLPDDNGKLQPL--GNPDG-  563 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC-ceEEEEecCCcccccc--cCCcc-
Confidence            4677888899999999999999999999999999999999999999999999988 6777788766544111  11110 


Q ss_pred             cccccccc-CChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEe
Q 006706          202 QIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML  280 (634)
Q Consensus       202 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~  280 (634)
                           +.. +.....+++.++++--             .+....|....+..|              +..++...||+.+
T Consensus       564 -----l~~~d~aaa~W~~~~~~~AG-------------~gTdTlpg~~~~~lP--------------l~~~~~~~gvlgv  611 (890)
T COG2205         564 -----LSADDRAAAQWAFENGKPAG-------------AGTDTLPGAKYLYLP--------------LKSGGKVLGVLGV  611 (890)
T ss_pred             -----ccHHHHHHhhchhhCCCccc-------------cCCCCCCCCceeEee--------------cccCCceEEEEEe
Confidence                 111 1112234444333211             111112233333344              4455667888888


Q ss_pred             cCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006706          281 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH  360 (634)
Q Consensus       281 ~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~  360 (634)
                      .........+++..++..+++|++.|+++..+.++..+.+-+               .+..+.++.|++++||||||||+
T Consensus       612 ~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~---------------~e~E~lRsaLL~sISHDLRTPLt  676 (890)
T COG2205         612 EPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA---------------AERERLRSALLASISHDLRTPLT  676 (890)
T ss_pred             cCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhccccCcHH
Confidence            888777789999999999999999999999887765544311               12234578999999999999999


Q ss_pred             HHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcC
Q 006706          361 AIIALSSLLLET--DL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK  437 (634)
Q Consensus       361 ~I~~~~~~l~~~--~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~  437 (634)
                      +|.|.++.|...  .+ +++..+.+..|.+.++++..++.+|++++|+++|.+.++.++..+.+++.+++..++..... 
T Consensus       677 ~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~veEvVg~Al~r~~k~~~~-  755 (890)
T COG2205         677 AIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTG-  755 (890)
T ss_pred             HHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchhhHHHHHHHHHHHhhhhcCC-
Confidence            999999999864  33 44477899999999999999999999999999999999999999999999999988876544 


Q ss_pred             CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEE
Q 006706          438 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVN  516 (634)
Q Consensus       438 ~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~  516 (634)
                       ..+.++++.+++. +..|...+.||+.||++||.||++++. +.+.+....+.                    +.|+|.
T Consensus       756 -~~i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~--------------------v~~~V~  813 (890)
T COG2205         756 -HKIVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVEREN--------------------VVFSVI  813 (890)
T ss_pred             -ceEEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecce--------------------EEEEEE
Confidence             4467777777775 778999999999999999999999876 66776665543                    999999


Q ss_pred             EcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006706          517 DSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN  588 (634)
Q Consensus       517 D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~  588 (634)
                      |+|+|||+++.++||++||+....+. ..|+||||+||+.+++.|||+|++++. +++|++|+|.||....+
T Consensus       814 DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~~iv~ahgG~I~a~~~-~~gGa~f~~~LP~~~~~  883 (890)
T COG2205         814 DEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICRGIVEAHGGTISAENN-PGGGAIFVFTLPVEEDP  883 (890)
T ss_pred             eCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHHHHHHHcCCeEEEEEc-CCCceEEEEEeecCCCC
Confidence            99999999999999999999877554 669999999999999999999999998 89999999999987554

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
3dge_A258 Structure Of A Histidine Kinase-response Regulator 4e-16
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 4e-16
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 4e-11
4ew8_A268 Crystal Structure Of A C-Terminal Part Of Tyrosine 1e-07
3d36_A244 How To Switch Off A Histidine Kinase: Crystal Struc 2e-06
3a0r_A349 Crystal Structure Of Histidine Kinase Thka (Tm1359) 5e-06
3a0t_A152 Catalytic Domain Of Histidine Kinase Thka (Tm1359) 2e-05
3cgy_A157 Crystal Structure Of Salmonella Sensor Kinase Phoq 9e-04
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 344 RNDFRAVMNHEMRTLMHAIIALSSLLL----ETDLTPEQRVMIETVLKSSNXXXXXXXXX 399
           + +F A ++HE+RT + AI A +  +     E DL+   +  +E ++  SN         
Sbjct: 20  KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-LKEFLEVIIDQSNHLENLLNEL 78
Query: 400 XXXSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR 459
              SRLE  SL+++    +L  ++   +  IK  AS   +++        P  A  D  R
Sbjct: 79  LDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTR 138
Query: 460 LMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 515
           + Q +LN++ N VK++K    + YV +I                      DG   + V+ 
Sbjct: 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILD------------------EKDGGVLIIVE- 179
Query: 516 NDSGCGVPPQDIPLLFTKFAQSRGS-SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 574
            D+G G+P      +F +F +   S + + P  GLGLAI +  V L GG IW++SE + K
Sbjct: 180 -DNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGK 237
Query: 575 GS 576
           GS
Sbjct: 238 GS 239
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 Back     alignment and structure
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda Length = 244 Back     alignment and structure
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Back     alignment and structure
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In Complex With Adp And Mg Ion (Trigonal) Length = 152 Back     alignment and structure
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq Catalytic Domain In Complex With Radicicol Length = 157 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 4e-69
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 3e-61
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 1e-29
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 6e-29
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 6e-28
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 2e-27
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 8e-24
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 9e-24
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 1e-22
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 2e-22
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 4e-21
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 7e-21
3p01_A184 Two-component response regulator; PSI-2, midwest c 2e-19
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 3e-19
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 4e-19
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 4e-18
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 1e-17
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 1e-17
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 1e-14
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 1e-13
4fmt_A228 CHPT protein; A phosphotransfer protein, A two-com 4e-10
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 2e-09
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 1e-07
2qyb_A181 Membrane protein, putative; GAF domain, domain of 9e-07
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 2e-06
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 3e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 8e-06
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 2e-05
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 5e-04
2ayx_A254 Sensor kinase protein RCSC; two independent struct 8e-04
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  224 bits (574), Expect = 4e-69
 Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 35/272 (12%)

Query: 313 LEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET 372
               +   + +++   AL        +A   + DF   +++E+RT +  II  S LL   
Sbjct: 11  SSGLVPRGSHMLQS--ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERA 68

Query: 373 D-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIK 431
           D ++   R  +  V  ++  L   +DDVLD+++++ G + L+     +  +L    +   
Sbjct: 69  DGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERAL 128

Query: 432 PVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPE 490
             A    +++ +    ++     GD KRL QT+ ++V NA++ T   G V++ A  A  E
Sbjct: 129 KDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGE 187

Query: 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR--GSSCQTPRAG 548
                               +R+ V+D+G GVP      +F +F      G        G
Sbjct: 188 --------------------VRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGP-------G 220

Query: 549 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580
           LGLA+ +  V L GG + L+SE    GST T 
Sbjct: 221 LGLALVKALVELHGGWVALESE-PGNGSTFTC 251
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Length = 169 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query634
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 100.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 100.0
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.98
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.97
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 99.97
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 99.97
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.97
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.97
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.97
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.96
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 99.95
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.93
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.92
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.9
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.9
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.9
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.89
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.88
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.88
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.83
3zxo_A129 Redox sensor histidine kinase response regulator; 99.8
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.77
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.66
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.6
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.59
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.49
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.4
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.39
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.36
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.34
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.32
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.31
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.26
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.24
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.24
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.17
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.11
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.08
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.06
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.04
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.01
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.01
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.0
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 98.99
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 98.91
3hcy_A151 Putative two-component sensor histidine kinase PR; 98.91
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 98.9
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 98.9
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 98.88
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 98.84
1vhm_A195 Protein YEBR; structural genomics, unknown functio 98.76
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 98.67
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 98.65
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 98.62
4e04_A327 Bacteriophytochrome (light-regulated signal trans 98.62
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 98.61
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 98.58
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 98.49
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.49
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 98.46
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.4
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.4
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.39
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 98.35
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.34
3mm4_A 206 Histidine kinase homolog; receiver domain, CKI1, c 98.33
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.25
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.24
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.19
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.18
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.13
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.11
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.06
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 97.74
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 97.45
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.43
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 97.43
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 97.38
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 97.24
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 97.06
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 97.03
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 96.93
3peh_A281 Endoplasmin homolog; structural genomics, structur 96.83
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 96.63
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 96.58
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 96.57
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 96.55
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 96.5
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 96.3
4duh_A220 DNA gyrase subunit B; structure-based drug design, 95.9
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 95.84
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 95.81
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 95.55
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 95.53
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 95.46
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 95.16
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 94.89
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 94.41
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 93.6
3e98_A252 GAF domain of unknown function; structural genomic 92.2
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 89.19
4a2l_A795 BT_4663, two-component system sensor histidine kin 84.54
3ott_A758 Two-component system sensor histidine kinase; beta 84.28
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=100.00  E-value=9.4e-36  Score=295.52  Aligned_cols=230  Identities=29%  Similarity=0.472  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 006706          336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL  412 (634)
Q Consensus       336 ~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l  412 (634)
                      ++++..+.+.+|++.++|||||||++|.++++++...   ...++.+++++.+.+.++++..++++++++++++.+...+
T Consensus        12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~   91 (258)
T 2c2a_A           12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI   91 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence            3445556678999999999999999999999998753   2344567899999999999999999999999999888888


Q ss_pred             cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeec
Q 006706          413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK  488 (634)
Q Consensus       413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~  488 (634)
                      ..+++++.++++++...+...+..+++.+.++.+.+.+..+.+|+..|.||+.||++||+||++.+    .+.+.+...+
T Consensus        92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~  171 (258)
T 2c2a_A           92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD  171 (258)
T ss_dssp             CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred             ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence            889999999999999999999999999998887655555677899999999999999999999754    3455444333


Q ss_pred             CCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCC-CCCccccHHHHHHHHHHhCCEEEE
Q 006706          489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIWL  567 (634)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~i~v  567 (634)
                      +                    .+.|+|+|+|+||+++.++++|+||++.+..... ..|+||||++||++++.|||+|++
T Consensus       172 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v  231 (258)
T 2c2a_A          172 G--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV  231 (258)
T ss_dssp             T--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred             C--------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence            2                    3899999999999999999999999998765332 349999999999999999999999


Q ss_pred             EecCCCCceEEEEEEEecC
Q 006706          568 DSEGLDKGSTVTFLVKLGI  586 (634)
Q Consensus       568 ~s~~~g~Gt~f~i~lP~~~  586 (634)
                      +|. +|+||+|+|+||...
T Consensus       232 ~s~-~~~Gt~f~i~lP~~~  249 (258)
T 2c2a_A          232 ESE-VGKGSRFFVWIPKDR  249 (258)
T ss_dssp             EEE-TTTEEEEEEEEECCC
T ss_pred             Eec-CCCCcEEEEEeeCCC
Confidence            998 899999999999753
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 634
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 1e-33
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 2e-27
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 2e-26
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 7e-26
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 1e-24
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 5e-20
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 3e-18
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 8e-15
d1i58a_189 d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m 2e-12
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 5e-09
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 7e-08
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 5e-07
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 3e-05
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 3e-04
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score =  123 bits (311), Expect = 1e-33
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGN 470
           +++    +L  ++   +  IK  AS   +++        P  A  D  R+ Q +LN++ N
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 471 AVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530
            VK++K+                         +       + + V D+G G+P      +
Sbjct: 61  GVKYSKKDAPDKYVK---------------VILDEKDG-GVLIIVEDNGIGIPDHAKDRI 104

Query: 531 FTKFAQSRGS-SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580
           F +F +   S + + P  GLGLAI +  V L GG IW++SE + KGS    
Sbjct: 105 FEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGSRFFV 154
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query634
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.97
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.96
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.96
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.96
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.94
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.93
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.93
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.69
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.52
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.5
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.41
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.36
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.27
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.16
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.14
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.77
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 98.75
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 98.69
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.58
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.53
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.39
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.3
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.29
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 97.73
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 97.37
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 95.99
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 95.61
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 95.53
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 95.19
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 95.07
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 93.07
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 91.29
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.4e-31  Score=239.50  Aligned_cols=153  Identities=29%  Similarity=0.470  Sum_probs=130.1

Q ss_pred             ccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc----EEEEEEee
Q 006706          412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVA  487 (634)
Q Consensus       412 l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~----i~v~~~~~  487 (634)
                      ++.+++|+.+++++++..++..+..+++.+.++.+.+.+..+.+|+.+|.||+.||++||+||++++.    +.+.....
T Consensus         2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~   81 (161)
T d2c2aa2           2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK   81 (161)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred             CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEec
Confidence            45679999999999999999999999999999887777767889999999999999999999998764    44444333


Q ss_pred             cCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCC-CCCccccHHHHHHHHHHhCCEEE
Q 006706          488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIW  566 (634)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~i~  566 (634)
                      ++                    ++.|+|+|+|+||++++++++|+|||+.+...+. ..|+||||++||++++.|||+|+
T Consensus        82 ~~--------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i~  141 (161)
T d2c2aa2          82 DG--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW  141 (161)
T ss_dssp             TT--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEE
T ss_pred             CC--------------------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHHHHHHCCCEEE
Confidence            22                    4999999999999999999999999998765443 35999999999999999999999


Q ss_pred             EEecCCCCceEEEEEEEec
Q 006706          567 LDSEGLDKGSTVTFLVKLG  585 (634)
Q Consensus       567 v~s~~~g~Gt~f~i~lP~~  585 (634)
                      ++|. +|+||+|+|+||..
T Consensus       142 v~s~-~~~Gt~f~i~lP~~  159 (161)
T d2c2aa2         142 VESE-VGKGSRFFVWIPKD  159 (161)
T ss_dssp             EEEE-TTTEEEEEEEEECC
T ss_pred             EEec-CCCeeEEEEEEEcc
Confidence            9999 99999999999974
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure