Citrus Sinensis ID: 006752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
Protein Sequence
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSSTQDAMGLR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHcccccEEEccccccccHHHHHHHHccccccEEEcccccccccHHHHHccccccccEEEcccccccccHHHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHccccccEEEcccccccccccccccccccEEEcccccccccHHHHHHHccccccEEEEcccccccccHHHHHcccccccEEEccccccccccHHHccccccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccEEEccccccccHHHHHHHHHccccEEEcccccccccccccccccccccHHHHHHHHHHccccccccccHHHcccccccHHHHHHccccccccccccccccHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEcccccccccHHHHHHHHcHHHccEEcccccccccHHHHHHHHHHHHccEEEcccccccHHHHHHHHcHHHccEEEcccccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHcccEEEcccccccccccHHHccEccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcEcccccccccHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHHHHHccEEEcccccccHHHHHHHHccHcccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHcHHHHHHHHHccEEEcccccccHHHHHHHHHHHHccEEEcccccccHHHHHHHHccHcccEEEcccccccHHHHHHHcccccccEEEccccccccHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccHHHHHHccccccccccHHHHHccccHHHHHHHHHcccHccccccccHHHccccc
Coil and Loop (DISEMBL)
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIElrgensvdAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTgmtclkeldlsrcvkVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLqnlsvldlgglpvtDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKmfprlsflnlawtgvtklpnissleclnlsnctidsilegnenkaplakISLAGTTFINEREAFLYIETSLLSFldvsnsslsrFCFLTQMKALEhldlsssmigddSVEMVACVGANlrnlnlsntrfssagvgilaghlpnleilslsgtqiDDYAISYMsmmpslkfidisntdikgmypsgqmnvFFSAYCFMIVYNLFLHAYgyvifpssvLAGFIQQVGAETDLVLSLTALQNLNHLERLnleqtqvsdatlfplstFKELIHLSLrnasltdvslhqlsslskltnlsirdavltnsglgsfkpprslklldlhggwllTEDAILQFCKMHPRIEVWHELSvicpsdqigsngpspsrtSLRASLVkqkqdpmpmshsfLDQRLKYSREELLELQYSSlslarpddsstqdamglr
Flexible Loop (DISEMBL)
MERERESELVRLCIEaacqsgesvqkWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIelrgensvdAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTnsglgsfkppRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLvkqkqdpmpmsHSFLDQRLKYSREELLELQysslslarpddsstqdamglr
Low Complexity Region (SEG)
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSllrhlirrrliFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSlklldlhggwllTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSReellelqysslslARPDDSSTQDAMGLR
Disordered region (IsUnstruct)
********LVRLCIEAACQSG**VQKW******LERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP***********************************************************************
Disordered Region (DISOPRED)
*****ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHE******************************************QRLKYSREELLELQY*************Q*AMGL*
Disordered Region (DISEMBL)
*********VRLCIEAACQ***********RRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ*************************PMSHSFLDQRLKYSREELLELQYSSLSL***************
Disordered Region (DISPRO)
*****ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVI********************************SHSFLDQRLKYSREELLELQYS*******************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSSTQDAMGLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	632	2.2.26 [Sep-21-2011]
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.452	0.684	0.253	4e-07
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.452	0.715	0.253	6e-07
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.452	0.715	0.253	6e-07
Q723X5	1775	Internalin-I OS=Listeria	no	no	0.547	0.194	0.253	8e-07
Q8YA32	1778	Internalin-I OS=Listeria	yes	no	0.667	0.237	0.235	9e-07
Q8CDU4	790	F-box/LRR-repeat protein	no	no	0.376	0.301	0.241	2e-06
Q8NEE6	735	F-box/LRR-repeat protein	no	no	0.419	0.360	0.259	2e-05
Q9DGB6	781	Toll-like receptor 2 type	yes	no	0.148	0.120	0.376	0.0002
Q8IY45	258	Protein AMN1 homolog OS=H	no	no	0.327	0.802	0.242	0.0002
Q8LB33	353	F-box protein At3g58530 O	no	no	0.200	0.359	0.284	0.0002

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 66  NAEAIELRG-----ENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKE 119
           N E++ L G     +N +   ++  +G+   LR+LN++ C+++T S+L  +   +  L+ 
Sbjct: 91  NIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLCKQITDSSLGRIAQYLKGLEV 147

Query: 120 LDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177
           L+L  C  +T+ G+  +   +  L+ L L      +D GI  L+ +   +    G L + 
Sbjct: 148 LELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA--EGCLGLE 205

Query: 178 DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL-NLAWTGVTKLPNISSLECL 236
            L L+  Q LT L    +      +RG   L++   LSF   ++  G+  L ++ SL  L
Sbjct: 206 QLTLQDCQKLTDLSLKHI------SRGLTGLRLLN-LSFCGGISDAGLLHLSHMGSLRSL 258

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD-VSNSSLSRFC 295
           NL +C  D+I +       +  + L+G                 +SF D V + SL+   
Sbjct: 259 NLRSC--DNISDTGIMHLAMGSLRLSGLD---------------VSFCDKVGDQSLA--- 298

Query: 296 FLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 353
           ++ Q +  L+ L L S  I DD +  +      LR LN+    R +  G+ ++A HL  L
Sbjct: 299 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 358

Query: 354 EILSLSG-TQIDDYAISYMSMMPSLKFIDIS 383
             + L G T+I    +  ++ +P LK +++ 
Sbjct: 359 TGIDLYGCTRITKRGLERITQLPCLKVLNLG 389

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.
Homo sapiens (taxid: 9606)

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 66  NAEAIELRG-----ENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKE 119
           N E++ L G     +N +   ++  +G+   LR+LN++ C+++T S+L  +   +  L+ 
Sbjct: 91  NIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLCKQITDSSLGRIAQYLKGLEV 147

Query: 120 LDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177
           L+L  C  +T+ G+  +   +  L+ L L      +D GI  L+ +   +    G L + 
Sbjct: 148 LELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA--EGCLGLE 205

Query: 178 DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL-NLAWTGVTKLPNISSLECL 236
            L L+  Q LT L    +      +RG   L++   LSF   ++  G+  L ++ SL  L
Sbjct: 206 QLTLQDCQKLTDLSLKHI------SRGLTGLRLLN-LSFCGGISDAGLLHLSHMGSLRSL 258

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD-VSNSSLSRFC 295
           NL +C  D+I +       +  + L+G                 +SF D V + SL+   
Sbjct: 259 NLRSC--DNISDTGIMHLAMGSLRLSGLD---------------VSFCDKVGDQSLA--- 298

Query: 296 FLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 353
           ++ Q +  L+ L L S  I DD +  +      LR LN+    R +  G+ ++A HL  L
Sbjct: 299 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 358

Query: 354 EILSLSG-TQIDDYAISYMSMMPSLKFIDIS 383
             + L G T+I    +  ++ +P LK +++ 
Sbjct: 359 TGIDLYGCTRITKRGLERITQLPCLKVLNLG 389

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 66  NAEAIELRG-----ENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKE 119
           N E++ L G     +N +   ++  +G+   LR+LN++ C+++T S+L  +   +  L+ 
Sbjct: 91  NIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLCKQITDSSLGRIAQYLKGLEV 147

Query: 120 LDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177
           L+L  C  +T+ G+  +   +  L+ L L      +D GI  L+ +   +    G L + 
Sbjct: 148 LELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA--EGCLGLE 205

Query: 178 DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL-NLAWTGVTKLPNISSLECL 236
            L L+  Q LT L    +      +RG   L++   LSF   ++  G+  L ++ SL  L
Sbjct: 206 QLTLQDCQKLTDLSLKHI------SRGLTGLRLLN-LSFCGGISDAGLLHLSHMGSLRSL 258

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD-VSNSSLSRFC 295
           NL +C  D+I +       +  + L+G                 +SF D V + SL+   
Sbjct: 259 NLRSC--DNISDTGIMHLAMGSLRLSGLD---------------VSFCDKVGDQSLA--- 298

Query: 296 FLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 353
           ++ Q +  L+ L L S  I DD +  +      LR LN+    R +  G+ ++A HL  L
Sbjct: 299 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 358

Query: 354 EILSLSG-TQIDDYAISYMSMMPSLKFIDIS 383
             + L G T+I    +  ++ +P LK +++ 
Sbjct: 359 TGIDLYGCTRITKRGLERITQLPCLKVLNLG 389

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 190/445 (42%), Gaps = 99/445 (22%)

Query: 81  EWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS 140
           E +  L     L++L ++D + +T+  + A+T M  LK L L  C  +T  G   L ++ 
Sbjct: 377 EDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGC-GITSIGT--LDNLP 431

Query: 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
            LEKL L E  LT             S+ ++  LP             +L YLD+  + +
Sbjct: 432 KLEKLDLKENQLT-------------SISEINDLP-------------RLSYLDVSVNYL 465

Query: 201 SNRGAAVLKMFPRLSFLNLA---WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           +  G   LK  P L +LN++    + V+ L N  SL  +N+SN  I ++  G   + P  
Sbjct: 466 TTIGE--LKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINVSNNVIRTV--GKMTELP-- 519

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
                                SL  F    N+++S    +  M  L  +D S+++I +  
Sbjct: 520 ---------------------SLKEFY-AQNNNVSDISMIHDMPNLRKVDASNNLITN-- 555

Query: 318 VEMVACVGA-----NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372
                 +G       L+NL++ + R ++  V      LP+LE        I +  I  M 
Sbjct: 556 ------IGTFDNLPKLQNLDVHSNRITNTSV---IHDLPSLETFYAQNNLITN--IGTMD 604

Query: 373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSV-----L 426
            +P L ++D+S   I  + P G +          +  N  +L + G +   S +      
Sbjct: 605 NLPELTYVDLSFNRIPSLAPIGDLPKL---EILKVTDNYSYLRSLGTMDGVSKLRNLELQ 661

Query: 427 AGFIQQVGAETDLVLSLTALQNLNHLERLNL-EQTQVSDATLFPLSTFKELIHLSLRNAS 485
             ++   G E +L    +AL +L +L  LNL +   +SD  +  LST   LI+L+L +  
Sbjct: 662 NNYLNYTGTEGNL----SALSDLTNLTELNLRDNGYISD--ISGLSTLSRLIYLNLDSNK 715

Query: 486 LTDVS-LHQLSSLSKLT--NLSIRD 507
           + D+S L  L++L +LT  N  I D
Sbjct: 716 IKDISALSNLTTLQELTLENNQIED 740

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 55.8 bits (133), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 120/509 (23%), Positives = 214/509 (42%), Gaps = 87/509 (17%)

Query: 81  EWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS 140
           E +  L     L++L ++D   +T+  + A+T +  LK L L  C  +T  G   L ++ 
Sbjct: 380 EDLGTLNNLPKLQTLVLSDNENLTN--ITAITDLPQLKTLTLDGC-GITSIGT--LDNLP 434

Query: 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
            LEKL L E  +T             S+ ++  LP             +L YLD+  + +
Sbjct: 435 KLEKLDLKENQIT-------------SISEITDLP-------------RLSYLDVSVNNL 468

Query: 201 SNRGAAVLKMFPRLSFLNLA---WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           +  G   LK  P L +LN++    + V+ L N  SL  +N+SN  I ++  G   + P  
Sbjct: 469 TTIGD--LKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTV--GKMTELPSL 524

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
           K   A    I   +  +  +   L  +D SN+ ++       +  L+ LD+ S+ I   S
Sbjct: 525 KEFYAQNNSI--SDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582

Query: 318 V--------------EMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
           V               ++  +G   NL +L   N  F+        G LPNLE L +S  
Sbjct: 583 VIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDN 642

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421
                ++  M  +P L+ +D+ N  +      G ++   S    +   NL  + Y   I 
Sbjct: 643 NSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLS-SLSDLTNLTELNLRNNVYIDDIS 701

Query: 422 PSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLS 480
             S L+  I  +  +++ +  ++AL NL +L+ L LE  ++ + + L  L    +L+   
Sbjct: 702 GLSTLSRLI-YLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLV--- 757

Query: 481 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 540
                   VS +++  +S + N+  R A++T S   ++  P  L                
Sbjct: 758 --------VSKNKIIDISPVANMVNRGAIVTASN-QTYTLPTVLSYQS------------ 796

Query: 541 LQFCKMHPRIEVWHELSVICPSDQIGSNG 569
             F   +P I  W++ +++ PS  IG++G
Sbjct: 797 -SFTIDNPVI--WYDGTLLAPS-SIGNSG 821

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q8CDU4|FXL13_MOUSE F-box/LRR-repeat protein 13 OS=Mus musculus GN=Fbxl13 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 129/311 (41%), Gaps = 73/311 (23%)

Query: 68  EAIELRGENSV-DAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV 126
           + I   G   + DA + +    +  +  + + DC+ +T S+L +L+ +  L  L+L+ C+
Sbjct: 454 KKIRFEGNKRISDACFKSIDRNYPGINHIYMVDCKGLTDSSLKSLSLLKQLTVLNLTNCI 513

Query: 127 KVTDAGMKHLLSIST---LEKLWLSETGLTADG--IALLSSLQNLSVLDLGGLP-VTDLV 180
           ++ D G+KH         L +L L+   L  D   I L     NL  L+L     +TDL 
Sbjct: 514 RIGDIGLKHFFDGPASIRLRELNLTNCSLLGDSSVIRLSERCPNLHYLNLRNCEHLTDLA 573

Query: 181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSN 240
           +  +  +  L  +DL G+ +SN G  +L                 KL  +S  +C+N+++
Sbjct: 574 IEYIASMLSLISVDLSGTLISNEGMTILSRH-------------RKLREVSVSDCVNITD 620

Query: 241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
             I +                             Y +TSLL                   
Sbjct: 621 FGIRA-----------------------------YCKTSLL------------------- 632

Query: 301 KALEHLDLS-SSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSL 358
             LEHLD+S  S + DD ++ +A     + +LN++   + + AG+ IL+     L IL +
Sbjct: 633 --LEHLDVSYCSQLTDDIIKTIAIFCTRITSLNIAGCPKITDAGMEILSARCHYLHILDI 690

Query: 359 SGT-QIDDYAI 368
           SG  Q+ D  I
Sbjct: 691 SGCIQLTDQII 701

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Mus musculus (taxid: 10090)

>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 139/331 (41%), Gaps = 66/331 (19%)

Query: 90  RYLRSLNVADCRRVTSSALWALT----GMTC----------------------LKELDLS 123
           R L+ LNV+DC   T  ++  ++    G+ C                      L+ L L+
Sbjct: 245 RNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLA 304

Query: 124 RCVKVTDAGMKHLLSISTLEKL-WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR 182
            C + TD G+++L   +   KL +L  +G T        S+Q    +      +  L + 
Sbjct: 305 YCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQ------ISVQGFRYIANSCTGIMHLTIN 358

Query: 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCT 242
            +  LT             N   A+++   R++  +L +TG    P+IS      LS C 
Sbjct: 359 DMPTLT------------DNCVKALVEKCSRIT--SLVFTGA---PHISDCTFRALSACK 401

Query: 243 IDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301
           +  I  EGN+      +++ A   FI++     Y   S +   D    + S    L+ +K
Sbjct: 402 LRKIRFEGNK------RVTDASFKFIDKN----YPNLSHIYMADCKGITDSSLRSLSPLK 451

Query: 302 ALEHLDLSSSM-IGDDSVEMV--ACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILS 357
            L  L+L++ + IGD  ++          +R LNLSN  R S A V  L+   PNL  LS
Sbjct: 452 QLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLS 511

Query: 358 LSGTQ-IDDYAISYMSMMPSLKFIDISNTDI 387
           L   + +    I Y+  + SL  ID+S TDI
Sbjct: 512 LRNCEHLTAQGIGYIVNIFSLVSIDLSGTDI 542

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q9DGB6|TLR22_CHICK Toll-like receptor 2 type-2 OS=Gallus gallus GN=TLR2-2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 295 CFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNLSNTRFSSAGV-GILAGHL 350
           C L+Q + +LE+LDLS++++GD S+E  AC GA  +L+ LNLS    S   + G    HL
Sbjct: 350 CKLSQHLLSLEYLDLSANLLGDQSLEHSACQGAWPSLQTLNLSQNSLSDLKMTGKSLFHL 409

Query: 351 PNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDIKGM 390
            NL +L +S     +  I  M   P +LK++++S+T I  +
Sbjct: 410 RNLNLLDISENNFGE--IPDMCEWPENLKYLNLSSTQIPKL 448

Participates in the innate immune response to microbial agents. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Mediates the response to mycoplasmal macrophage-activating lipopeptide-2kD (MALP-2).

Gallus gallus (taxid: 9031)

>sp|Q8IY45|AMN1_HUMAN Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 115/256 (44%), Gaps = 49/256 (19%)

Query: 1   MERERE-SELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHL-IRRRLIFPS 58
           M R R  S+L+ LC+         ++   R    ++ LP ++ D L++ + ++ ++   +
Sbjct: 1   MPRPRRVSQLLDLCLWCF------MKNISRYLTDIKPLPPNIKDRLIKIMSMQGQITDSN 54

Query: 59  LLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCR----RVTSSALWAL-TG 113
           + E+     + ++LR  +  DA  + +L   R L+ LN+   +     VTS  + A+ + 
Sbjct: 55  ISEILHPEVQTLDLRSCDISDAALL-HLSNCRKLKKLNLNASKGNRVSVTSEGIKAVASS 113

Query: 114 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG 173
            + L E  L RC  +TD G+                       +AL  + Q L ++DLGG
Sbjct: 114 CSYLHEASLKRCCNLTDEGV-----------------------VALALNCQLLKIIDLGG 150

Query: 174 -LPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS 231
            L +TD+ L +L +    L+ +D   +QVS+ G   L   P             KL  I 
Sbjct: 151 CLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGP----------CAKKLEEIH 200

Query: 232 SLECLNLSNCTIDSIL 247
              C+NL++  ++++L
Sbjct: 201 MGHCVNLTDGAVEAVL 216

Homo sapiens (taxid: 9606)

>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 31/158 (19%)

Query: 90  RYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
           R++  LN++ C+ +T  ++  +      L+ L+++RCVK+TD G+     +  L+K +  
Sbjct: 163 RHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGL-----LQVLQKCF-- 215

Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSNRGAAV 207
                        SLQ L++  L G   TD     + +L  L +LD+ G+Q +S+ G   
Sbjct: 216 -------------SLQTLNLYALSGF--TDKAYMKISLLADLRFLDICGAQNISDEGIGH 260

Query: 208 LKMFPRLSFLNLAW------TGVTKLPN-ISSLECLNL 238
           +    +L  LNL W       GV  + N  +SLE L+L
Sbjct: 261 IAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEFLSL 298

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	632
356513289	589	PREDICTED: uncharacterized protein LOC10	0.914	0.981	0.609	0.0
297742329	588	unnamed protein product [Vitis vinifera]	0.895	0.962	0.593	0.0
255537779	597	protein binding protein, putative [Ricin	0.905	0.958	0.623	0.0
225426352	598	PREDICTED: uncharacterized protein LOC10	0.895	0.946	0.586	0.0
449464060	586	PREDICTED: uncharacterized protein LOC10	0.920	0.993	0.545	1e-177
297803756	590	hypothetical protein ARALYDRAFT_492485 [	0.898	0.962	0.508	1e-153
186701224	600	leucine-rich repeat family protein [Arab	0.916	0.965	0.513	1e-150
42567079	597	leucine-rich repeat-containing protein [	0.911	0.964	0.497	1e-143
326513166	627	predicted protein [Hordeum vulgare subsp	0.895	0.902	0.478	1e-140
218196286	601	hypothetical protein OsI_18882 [Oryza sa	0.900	0.946	0.475	1e-139

>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/620 (60%), Positives = 474/620 (76%), Gaps = 42/620 (6%)

Query: 4   ERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVF 63
           + ESELV  CIEAAC+S ESV KWR Q RSL+RLP+HLADSLLR LI RRL++PSLLEVF
Sbjct: 2   KSESELVGFCIEAACESRESVDKWRMQSRSLDRLPSHLADSLLRRLIARRLLYPSLLEVF 61

Query: 64  KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS 123
           KH+AE +++RG+NSVDAEWMAYLGA+R+LR LN++DC RV++SALW +TGM+ L+ELDLS
Sbjct: 62  KHSAEEVDVRGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLS 121

Query: 124 RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS 183
           RC KV DAG+ H+LSI  LE+L +SET +TA G+ LL+SL+NLS+LDLGGLPV D+ L S
Sbjct: 122 RCFKVNDAGINHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTS 181

Query: 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 243
           LQVL +L Y+DLWGS++SN+GA+VL  FP+L++LNLAWT VTKLP +S LE LN+SNCTI
Sbjct: 182 LQVLKRLHYIDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTKLPKLSFLEYLNMSNCTI 241

Query: 244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKAL 303
           DSILE  ++KAPLAK+ L+G  F+NE EA LY  T+ LSFLDV+NSS  RF FL++MK +
Sbjct: 242 DSILE--DDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVI 299

Query: 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
           EHL+LSS M+GDDSVEMVAC G NL++LNLS TR SSAG+GILAGH+P+LEILSLS T +
Sbjct: 300 EHLNLSSCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPV 359

Query: 364 DDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPS 423
           DD AIS++SMMPSLK +D+SNT+IKG                                  
Sbjct: 360 DDTAISFISMMPSLKDVDLSNTNIKG---------------------------------- 385

Query: 424 SVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483
                F+ Q   + + +LSL ALQNL  LERLNLE TQV D  L+PLS+F+EL +LSL++
Sbjct: 386 -----FLHQGRTDVNSLLSLMALQNLK-LERLNLEHTQVRDEALYPLSSFQELRYLSLKS 439

Query: 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 543
           ASL D+SL+ LSS+ KLTNLSI DAVLTN GL  FK P +LKLLDL G WLLTED IL F
Sbjct: 440 ASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCWLLTEDTILSF 499

Query: 544 CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYS 603
           C+ HP++EV HEL  + P +Q G N  SPSR++ +   + +K+D +P+S  F+DQRLKYS
Sbjct: 500 CRNHPQVEVRHELGTLFPVNQNGLNHSSPSRSTSKTMQMTKKKDQIPLSPYFVDQRLKYS 559

Query: 604 REELLELQYSSLSLARPDDS 623
           R+ELL LQ++SL LA   +S
Sbjct: 560 RDELLALQFTSLPLASSSES 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/623 (59%), Positives = 464/623 (74%), Gaps = 57/623 (9%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV LCIEAA QS ++V+KWRRQRR+L+R+P+HLA++LL  LIRRR++ PSLLEVFK 
Sbjct: 9   ETRLVCLCIEAASQSRDAVEKWRRQRRTLQRMPSHLAEALLHRLIRRRILNPSLLEVFKF 68

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+SVDAEWMAY+G F  L SLN+ADC+R+T+SALW + GM  LKELDLSRC
Sbjct: 69  SVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRC 128

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
           +K +D+G++HL+SI TL+KL +SETG+TADGI L+SSL NLSVLDLGGLPVTDLVL SLQ
Sbjct: 129 IKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQ 188

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLTKL+YLDLWGS++SN+GAA L +FP+LSFLN+AWT VT LP++ S+ CLN+SNCTI S
Sbjct: 189 VLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHS 248

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
           + EG   KA L KI+++G TF+N  EAFL+IETS LSFLDVS SSL+ FCFL+ MKALEH
Sbjct: 249 MFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEH 308

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLS +M+GDDS++++AC+GANLRNLNLSNTR SSAGV ILAG +PNLE +SLS T +DD
Sbjct: 309 LDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDD 368

Query: 366 YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV 425
            AISY+SMM S+K I++SNT++KG+                                   
Sbjct: 369 VAISYISMMSSVKIINLSNTNVKGL----------------------------------- 393

Query: 426 LAGFIQQVGAETDLV--LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483
                  + ++++LV  LSL AL +LN+++RL+LE TQV D  L PL  F++L  LSL+ 
Sbjct: 394 -------IWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKG 446

Query: 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 543
             LTD+SL+QLSSL  L NLSI D VLTN GL SFKPP +LKLLDL G WLLTEDAIL F
Sbjct: 447 TRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTEDAILSF 506

Query: 544 CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHS------FLD 597
            K  P+IEV HEL  I PS+Q  SN  SPS+         +KQ  +P S S       +D
Sbjct: 507 HKNDPQIEVRHELVHITPSEQNASNRSSPSQKG-------KKQQKLPKSQSRSKEETVID 559

Query: 598 QRLKYSREELLELQYSSLSLARP 620
           QR KYSREELL +++S+L+L  P
Sbjct: 560 QRWKYSREELLAMEHSTLALNFP 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis] gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/617 (62%), Positives = 461/617 (74%), Gaps = 45/617 (7%)

Query: 4   ERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVF 63
           E ES+LVRLCIEAAC+S ES+ KWRRQRR+LERLP+ LAD LLR L+ RRL+FPSLLEVF
Sbjct: 2   ETESQLVRLCIEAACESRESIDKWRRQRRTLERLPSPLADILLRRLLHRRLLFPSLLEVF 61

Query: 64  KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS 123
           K + E ++LRGEN+VDAEWMAYLGAFRYLR LN+ADC ++TSSALW+LTGMT LKELDLS
Sbjct: 62  KQSVEVVDLRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLS 121

Query: 124 RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS 183
           R VKVTDAG++HLLSIS+LE L + ETGLTA G+ALL+SL NLSVLDLGGLPVTD+ L S
Sbjct: 122 RSVKVTDAGIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSS 181

Query: 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 243
           LQVLTKLEYLDLWGS +SN G AVL++FP+LSFLNL WT VT+LP++ SLE LNLSNCTI
Sbjct: 182 LQVLTKLEYLDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVTRLPSMLSLEYLNLSNCTI 241

Query: 244 DSILEGNEN--KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301
           +S+LEG+ +  KAPL K+ L+G TF NE EAF  IE   LSFLDVSNSSL  F FL  MK
Sbjct: 242 ESLLEGDGDGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMK 301

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
            LEHLDLSS+M+GDD++E VAC+GANL NLNLS TR +SAG+ ILA H+P LE LSLS  
Sbjct: 302 MLEHLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHA 361

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421
            +DD+A+SY+ MM SLK +D+SNT+IKG                                
Sbjct: 362 LVDDFALSYIGMMSSLKVVDLSNTNIKG-------------------------------- 389

Query: 422 PSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 481
                  FI+Q+G ET+L+ SL ALQ L+ L+ LNLE TQV DA + P+S+F+EL HLSL
Sbjct: 390 -------FIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVAPVSSFQELSHLSL 442

Query: 482 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL 541
           ++ASL D +L+ LSSLSKLT+L I DAVLTN GL  F+PP +LK+LDL G WLLTE+AI 
Sbjct: 443 KSASLADETLYHLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLDLRGCWLLTEEAIS 502

Query: 542 QFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPM----PMSHSFLD 597
            FC  HP I++ HEL  +   ++  S   SPSR   R   V +KQ  M    PM   F+D
Sbjct: 503 SFCTKHPAIKLRHELLNVSSPNESSSYRASPSRILSRPPHVSRKQGKMPVSWPMPQHFID 562

Query: 598 QRLKYSREELLELQYSS 614
           QRLKYSREELL LQY S
Sbjct: 563 QRLKYSREELLALQYQS 579

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/633 (58%), Positives = 465/633 (73%), Gaps = 67/633 (10%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV LCIEAA QS ++V+KWRRQRR+L+R+P+HLA++LL  LIRRR++ PSLLEVFK 
Sbjct: 9   ETRLVCLCIEAASQSRDAVEKWRRQRRTLQRMPSHLAEALLHRLIRRRILNPSLLEVFKF 68

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+SVDAEWMAY+G F  L SLN+ADC+R+T+SALW + GM  LKELDLSRC
Sbjct: 69  SVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRC 128

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
           +K +D+G++HL+SI TL+KL +SETG+TADGI L+SSL NLSVLDLGGLPVTDLVL SLQ
Sbjct: 129 IKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQ 188

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLTKL+YLDLWGS++SN+GAA L +FP+LSFLN+AWT VT LP++ S+ CLN+SNCTI S
Sbjct: 189 VLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHS 248

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
           + EG   KA L KI+++G TF+N  EAFL+IETS LSFLDVS SSL+ FCFL+ MKALEH
Sbjct: 249 MFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEH 308

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLS +M+GDDS++++AC+GANLRNLNLSNTR SSAGV ILAG +PNLE +SLS T +DD
Sbjct: 309 LDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDD 368

Query: 366 YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV 425
            AISY+SMM S+K I++SNT++KG+                                   
Sbjct: 369 VAISYISMMSSVKIINLSNTNVKGL----------------------------------- 393

Query: 426 LAGFIQQVGAETDLV--LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483
                  + ++++LV  LSL AL +LN+++RL+LE TQV D  L PL  F++L  LSL+ 
Sbjct: 394 -------IWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKG 446

Query: 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 543
             LTD+SL+QLSSL  L NLSI D VLTN GL SFKPP +LKLLDL G WLLTEDAIL F
Sbjct: 447 TRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTEDAILSF 506

Query: 544 CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHS--------- 594
            K  P+IEV HEL  I PS+Q  SN  SPS+         +KQ  +P S S         
Sbjct: 507 HKNDPQIEVRHELVHITPSEQNASNRSSPSQKG-------KKQQKLPKSQSRSKEETVIG 559

Query: 595 ----FLD---QRLKYSREELLELQYSSLSLARP 620
               FL+   QR KYSREELL +++S+L+L  P
Sbjct: 560 MEFPFLESSYQRWKYSREELLAMEHSTLALNFP 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus] gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 342/627 (54%), Positives = 432/627 (68%), Gaps = 45/627 (7%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV LCI +AC+S +SV+KWRRQ+R+LERLP+HLAD+LLR L  RRL++PSLLEVFK+
Sbjct: 2   ENRLVELCINSACRSKDSVEKWRRQKRTLERLPSHLADALLRRLHARRLLYPSLLEVFKY 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
             E ++L GEN+VD+EWMAYLG+FRYL+SLNV++C R++SS +W ++GMT L+EL++SRC
Sbjct: 62  TIEVVDLSGENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
           +KVTDAG++HLLSI TLEKL ++ETG+TA G+ LLSSL+ L  LDLGGLPVTD  L SLQ
Sbjct: 122 LKVTDAGIRHLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLTKL+YLDLWGS++SN G+ VL+MFP+LSFLN+AWT VTK PN+  LECLN+SNC IDS
Sbjct: 182 VLTKLQYLDLWGSKISNSGSDVLQMFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
            L+G   K P  K+  +G TF NE E   ++    L +LD SN+SL RFCFL++MKA+EH
Sbjct: 242 TLKGLGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+ IGD SVE++A VG NL+ LNLS T  SS+G+G LAG + NLE LSLS T +DD
Sbjct: 302 LDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDD 361

Query: 366 YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV 425
            A+SYM+MMPSLK ID+S TDIKG                                    
Sbjct: 362 VALSYMNMMPSLKCIDLSETDIKG------------------------------------ 385

Query: 426 LAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 485
              +I     ET  V SLT LQNL+ LE LNLE T V D +L PLS F++L HL LR+ S
Sbjct: 386 ---YIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRSPS 442

Query: 486 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 545
            TD  L  LS L  L  LSIRDAVLTN    +FKP  +L+ +DL G WLLTED +  F +
Sbjct: 443 FTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATLQKIDLRGCWLLTEDGLSVFHR 502

Query: 546 MHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSRE 605
             P+I+V HEL     S+   ++ PS      +  L  Q      M   F+DQRLKYS+E
Sbjct: 503 RFPQIDVRHELFHFS-SNPTSTDQPSTHFIPKKIQL-NQTSRSTGMPSYFVDQRLKYSKE 560

Query: 606 ELLELQYSSLSLARPDDSSTQDAMGLR 632
           ELL LQ+SSL    P  S++   MG +
Sbjct: 561 ELLALQFSSL----PHGSTSVPEMGRK 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp. lyrata] gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp. lyrata]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 315/620 (50%), Positives = 406/620 (65%), Gaps = 52/620 (8%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           ES LVRLCIE AC+SG++V++WR QRRSLERLP HLAD+LLR L+ +RL+FPSLLE FKH
Sbjct: 2   ESPLVRLCIEEACKSGDAVERWRLQRRSLERLPPHLADALLRRLLHKRLLFPSLLEGFKH 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+S++AEWMAY+G F  L SLN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct: 62  SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            KVTDAG+KHL S+  L+KLW+S+TG+T  GI+LL+SLQ LS+LDLGGLPVTD  L +LQ
Sbjct: 122 FKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPVTDHNLIALQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
            LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT VT+ PNI  LECL+++ CTI S
Sbjct: 182 ELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
             + + + A L K+ L+G  F  E EA  +   S +++LDVS +SL  F F+  M  LEH
Sbjct: 242 EPKTHCSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFIETMINLEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+  GDDSV  VACVG NL+NLN+S+T+ +SAGVG LAGH+P LE  SLS T +DD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNLAGHVPQLETFSLSQTFVDD 361

Query: 366 YAISYMS-MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424
            +I  +S MMP +K +D+  T I+                                    
Sbjct: 362 LSILLISTMMPCVKALDLGMTSIR------------------------------------ 385

Query: 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484
                      E     SL ALQ+L  L+ L+LE   + D  L  LS+   L HLSLR+ 
Sbjct: 386 -----------EEQAEPSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSLRST 434

Query: 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 544
           SLTD +LH LSSL  L +L +RDAVLT++GL  F+PP+ L+ LDL G WLLT+D I   C
Sbjct: 435 SLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLC 494

Query: 545 KMHPRIEVWHELSVICPSDQ----IGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRL 600
           K +P I+V HE       DQ      S+ P       R S  ++ +  + +  SFLDQR+
Sbjct: 495 KRYPHIKVRHEHDDSSSLDQNQFLPRSSTPQSFGKVPRRSNNQRPESSVAVPRSFLDQRV 554

Query: 601 KYSREELLELQYSSLSLARP 620
           KY+REEL+ LQ S LS   P
Sbjct: 555 KYNREELVALQNSPLSQLLP 574

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 320/623 (51%), Positives = 411/623 (65%), Gaps = 44/623 (7%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           ES LVRLCIE AC+SG +V++WR QRRSLERLP HLAD+LLR L+ +RL+FPSLLE FKH
Sbjct: 2   ESALVRLCIEEACKSGYAVERWRLQRRSLERLPPHLADALLRRLLHKRLLFPSLLEGFKH 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+S++AEWMAY+G F  L SLN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct: 62  SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            KVTDAG+KHL S+S L+KLW+S+TG+T  GI+LL+SL+ LS+LDLGGLPVTD  L +LQ
Sbjct: 122 WKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPVTDHNLIALQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
            LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT VT+ PNI  LECL+++ CTI S
Sbjct: 182 ALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
             + + + A L K+ L+G  F  E EA  +   S +++LDVS +SL  F FL  M  LEH
Sbjct: 242 EPKTHSSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFLETMINLEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+  GDDSV  VACVG NLRNLN+S T+ +SAGVG LAGH+P LE  SLS T +DD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGHVPQLETFSLSQTFVDD 361

Query: 366 YAISYMS-MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424
            +I  +S MMP +K +D+  T I+G                                   
Sbjct: 362 LSILLISTMMPCVKALDLGMTSIRGF---------------------------------- 387

Query: 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484
                +QQ   E     SL ALQ+L  L+ L+LE   + D  L  LS+   L HLSLR+ 
Sbjct: 388 ----ILQQSPQEEQAEPSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSLRST 443

Query: 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 544
           SLTD +LH LSSL  L +L +RDAVLT++GL  F+PP+ L+ LDL G WLLT+D I   C
Sbjct: 444 SLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLC 503

Query: 545 KMHPRIEVWHE--LSVICPSDQIGSNGPSPSRTSLRASLVKQKQDP---MPMSHSFLDQR 599
           K +P I+V HE  +S     +Q+     +P   S      +  Q P   + +  SFLDQR
Sbjct: 504 KRYPHIKVRHEHDISSSLDQNQLLPRSSTPQTQSFGKLPRRNNQRPESYVAVPRSFLDQR 563

Query: 600 LKYSREELLELQYSSLSLARPDD 622
           +KY+REEL+ LQ S LS   P +
Sbjct: 564 VKYNREELVALQKSPLSQLLPRE 586

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana] gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana] gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana] gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 308/619 (49%), Positives = 405/619 (65%), Gaps = 43/619 (6%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           ES LVRLC++ AC+SG++V++WR QRRSLE LP HLAD+LLR L+++RL+FPSLLE FK+
Sbjct: 2   ESPLVRLCLKEACKSGDAVERWRLQRRSLESLPPHLADALLRRLLKKRLLFPSLLEGFKY 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRG++SV+AEWMAY+G F  L +LN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct: 62  SVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            KVTDAGMKHL S+  L+KLW+S+TG+T  GI+LL+SL+ LS+LDLGGLPVTD  L SLQ
Sbjct: 122 FKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
            LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT +T+ PNI  LECL+++ CTI S
Sbjct: 182 ALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
             + + + A L K+ L+G  F  E E+  +   S +++LDVS +SL  F FL  M  LEH
Sbjct: 242 EPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+  GDDSV  VACVG NL+NLN+S+T+ + +GVG LAGH+P LE LS+S T +DD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDD 361

Query: 366 YAISYMS-MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424
            +I  +S  MP +K +D+      G Y                          Y+I P  
Sbjct: 362 LSILLISTTMPCIKALDLGMNSTLGFY--------------------------YLISP-- 393

Query: 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484
                      + +   SL ALQ+L  LE L+LE   + D  L  LS+   L HLSL + 
Sbjct: 394 -----------QEEKEKSLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLTST 442

Query: 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 544
           SLTD +LH LSSL  L +L +RD VLT++GL  F+PP  L+ LDL G WLLT+D I   C
Sbjct: 443 SLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLC 502

Query: 545 KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDP---MPMSHSFLDQRLK 601
           K +P I+V HE +     DQ      S +  S      +  Q P   + +  SFLDQR+K
Sbjct: 503 KRYPHIKVRHEHADSSSLDQNQLLPRSSTPQSFGKVARRNNQRPESSVAVPRSFLDQRVK 562

Query: 602 YSREELLELQYSSLSLARP 620
           Y+REEL+ LQ S LS   P
Sbjct: 563 YNREELVALQNSPLSQLLP 581

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/610 (47%), Positives = 402/610 (65%), Gaps = 44/610 (7%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E  L+  CI+AA +   SV+ WRRQRRSLERLP+ LAD+LLR L  RRL+FPSLLEVF+H
Sbjct: 36  EQRLLDRCIDAAARCPASVEAWRRQRRSLERLPSQLADALLRRLAARRLLFPSLLEVFRH 95

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + + I+L G+ +VDAEW+AYLG+FRYL  L +ADC++V  SA+W L+GM+ LKELDLSRC
Sbjct: 96  SVQEIDLSGDIAVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRC 155

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            K+TDAG+KH++SI +LEKL LSETGLT +G+ L+S+L+ L +LDLGG+ +TD  LRSLQ
Sbjct: 156 SKITDAGIKHIVSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQ 215

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLT+LE+LD+WGS++++ GA++L+ F  L FLN++WT VT+LP++ +++ LN+SNCTI S
Sbjct: 216 VLTQLEHLDVWGSEITDEGASILEAFTGLRFLNVSWTHVTRLPHLPNMKYLNMSNCTIYS 275

Query: 246 ILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE 304
           I  G+ E   PL K + +  +F +  E F  I  S  SFLD+S  SLS    L +MK+LE
Sbjct: 276 ICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSLSNLYGLQKMKSLE 335

Query: 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           HLD+S + + DD+VE VA +G  LR L+L NT  +S  + ILAG +PNL  LSL+ T+ID
Sbjct: 336 HLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPNLASLSLAYTKID 395

Query: 365 DYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424
           D A+ Y+SMMPSL+ ID+S+T IKG                                   
Sbjct: 396 DSALVYISMMPSLRVIDLSHTTIKGF---------------------------------- 421

Query: 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484
                  +V A ++ + SL  L++L +LE LNLE   +SD  + P+++F+ L +L L++ 
Sbjct: 422 ------TRVEANSEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSD 475

Query: 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 544
            L+D  LH LSS S L +L    +VL+NSGL  F PP  L +LDL G W+LT DAI  F 
Sbjct: 476 FLSDPGLHALSSASNLIHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWILTGDAISTFR 535

Query: 545 KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHS---FLDQRLK 601
           + HP IEV HEL+     ++ G++    SR   RA             HS   F+DQR+K
Sbjct: 536 RHHPSIEVRHELTQELQPNRGGTSQVHKSRQLPRAKTKVVNSSADSRRHSGIFFVDQRIK 595

Query: 602 YSREELLELQ 611
           YSREE++E+Q
Sbjct: 596 YSREEMMEIQ 605

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 403/616 (65%), Gaps = 47/616 (7%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV  CI+AA     +V+ WRRQRRSLERLPA LAD+LLR L  RRL+FPSLLEVF+H
Sbjct: 11  ETPLVDRCIDAAAGGAATVEAWRRQRRSLERLPAQLADALLRRLAARRLLFPSLLEVFQH 70

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+L G  +VDAEW+AYLGAFRYLR L +ADC+ V SSA+WAL+GM+ LKELDLSRC
Sbjct: 71  SVEEIDLSGHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRC 130

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            K++DAG+KH+ SI +LEKL +S+TGLT +G+  +SSL NL +LDLGG+  TD  LRSLQ
Sbjct: 131 SKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQ 190

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLT+LE+LD+WGS+++N GA+VL  F  LSFLN++WT VT LP + +L CLN+SNCTI S
Sbjct: 191 VLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHS 250

Query: 246 ILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE 304
           I  G  +    L K+ ++  +F N  E F  I  S L++LD+S+ S S   FL  M+ LE
Sbjct: 251 ICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLE 310

Query: 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           HLDLS S I  D++E +A +G NL  L+LSN+  +S  + +LAG +P+L  LSL+ T+ID
Sbjct: 311 HLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKID 370

Query: 365 DYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424
           D A+ Y+SMMPSL+ +++S T IKG               FM+                 
Sbjct: 371 DSALLYISMMPSLRILNLSRTCIKG---------------FMM----------------- 398

Query: 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484
                       +  VLSL+AL+ L +LE LNL  TQ+ D  + PL++F+ L +L L++ 
Sbjct: 399 ----------ENSVKVLSLSALEELKYLESLNLNNTQLMDDVIPPLASFRALKYLFLKSD 448

Query: 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 544
            L+D +LH LSS S L +L     +L+ +GL  F PP +L++LDL G W+LT DAI  FC
Sbjct: 449 FLSDPALHALSSASNLIHLGFCGNILSTTGLRKFVPPATLRMLDLSGCWILTGDAISAFC 508

Query: 545 KMHPRIEVWHELSVICPSDQIGS---NGPSPSRTSLRASLVKQKQDPMPMSH-SFLDQRL 600
             HP IEV HEL     ++  G+   +  S     ++A + K    P  ++   F+D+++
Sbjct: 509 TCHPVIEVRHELIQELQANYGGTSHLHKSSRQPQQVKAKVAKSLAGPSRLADICFVDEKI 568

Query: 601 KYSREELLELQYSSLS 616
           KYS+EE++ELQ+ + S
Sbjct: 569 KYSKEEMMELQHQAKS 584

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	632
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.780	0.825	0.472	3.2e-113
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.492	0.531	0.269	1e-17
DICTYBASE|DDB_G0291424	902	DDB_G0291424 "Transcription fa	0.498	0.349	0.236	2.6e-10
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.607	0.401	0.252	1.6e-09
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.639	0.410	0.247	3.6e-09
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.443	0.258	0.261	4e-09
ZFIN|ZDB-GENE-030131-5920	411	fbxl14a "F-box and leucine-ric	0.449	0.690	0.266	6.5e-09
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.452	0.715	0.266	1.3e-08
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.452	0.715	0.266	1.3e-08
RGD|1305523	400	Fbxl14 "F-box and leucine-rich	0.452	0.715	0.266	1.3e-08

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 243/514 (47%), Positives = 332/514 (64%)

Query:     6 ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSXXXXXXXXXXXFPSLLEVFKH 65
             ES LVRLC++ AC+SG++V++WR QRRSLE LP HLAD+           FPSLLE FK+
Sbjct:     2 ESPLVRLCLKEACKSGDAVERWRLQRRSLESLPPHLADALLRRLLKKRLLFPSLLEGFKY 61

Query:    66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
             + E I+LRG++SV+AEWMAY+G F  L +LN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct:    62 SVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query:   126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
              KVTDAGMKHL S+  L+KLW+S+TG+T  GI+LL+SL+ LS+LDLGGLPVTD  L SLQ
Sbjct:   122 FKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQ 181

Query:   186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
              LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT +T+ PNI  LECL+++ CTI S
Sbjct:   182 ALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVS 241

Query:   246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
               + + + A L K+ L+G  F  E E+  +   S +++LDVS +SL  F FL  M  LEH
Sbjct:   242 EPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEH 301

Query:   306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
             LDLSS+  GDDSV  VACVG NL+NLN+S+T+ + +GVG LAGH+P LE LS+S T +DD
Sbjct:   302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDD 361

Query:   366 YAISYMSM-MPSLKFIDISNTDIKGMYP--SGQMNVFFSAYCFMIVYNLFLHAYGYVIFP 422
              +I  +S  MP +K +D+      G Y   S Q     S      + +L   +  +    
Sbjct:   362 LSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLG 421

Query:   423 SSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 482
                L+G              L++L  L HL   +L  T ++D+TL  LS+   L+ L +R
Sbjct:   422 DKALSG--------------LSSLTGLTHL---SLTSTSLTDSTLHHLSSLPNLVSLGVR 464

Query:   483 NASLTDVSLHQLSSLSKLTNLSIRDA-VLTNSGL 515
             +  LT   L +    ++L  L ++   +LT   +
Sbjct:   465 DGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDI 498

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
 Identities = 87/323 (26%), Positives = 153/323 (47%)

Query:    69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKV 128
             +++  G +  D+  ++  G    L SLN   C ++++  L  L+G++ L  L   R   +
Sbjct:   142 SVDFSGSDITDSGLVSLKGCTN-LESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAI 200

Query:   129 TDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVL 187
             T  GM+ L ++  L+KL L +      G+  L +L  L  L++     +TD  +  L VL
Sbjct:   201 TAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVL 260

Query:   188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL-AWTGVTK-----LPNISSLECLNLSNC 241
             T L  L +  S++++ G + LK   +L+ LNL     VT      L  ++ L  LNL+ C
Sbjct:   261 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 320

Query:   242 TI-DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF-LDVSNSSLSRFCFLTQ 299
                DS  E   +   L  ++L      N     L   T L S  LD           L+ 
Sbjct:   321 NFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSG 380

Query:   300 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
             M  L+ L+LS + +G + +  ++ + +NL ++NLS T  + +G+  L+G L +L  L+L 
Sbjct:   381 MLELKSLELSDTEVGSNGLRHLSGL-SNLESINLSFTVVTDSGLRKLSG-LTSLRTLNLD 438

Query:   360 GTQIDDYAISYMSMMPSLKFIDI 382
                + D  +S ++ +  L  +D+
Sbjct:   439 ARHVTDAGLSALTSLTGLTHLDL 461

GO:0005886 "plasma membrane" evidence=ISM

DICTYBASE|DDB_G0291424 DDB_G0291424 "Transcription factor SKN7" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 82/346 (23%), Positives = 160/346 (46%)

Query:     9 LVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSXXXXXXXXXXXFPSLLEVFKH-NA 67
             L+ +C+E   ++ + ++       +LE LP  L                  L +F++   
Sbjct:   360 LMDICLEELVKNIDKIE-------TLEPLPDELCQKIIPLFQRRKILSLKTLSLFRNCKL 412

Query:    68 EAIELRG-ENSVDAEWMAYL-GAFRY-LRSLNVADCRRVTSSALWALTGMTCLKELDLSR 124
               +EL G E +++ EW+    G  +  L S+N++    +T   + +L+ +  L  LD+S 
Sbjct:   413 SRLELYGKEIAINDEWLNITKGLMKSTLSSINISKNNSLTDQGIASLSSLAKLSSLDISY 472

Query:   125 CVKVTDAGMKHLLSIST-LEKLWLS-ETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVL 181
             C K+   G++ L+     L+KL +   + L    +   LS L+ L+ L +G   +TD + 
Sbjct:   473 CEKIDGTGLEPLVDAGVPLQKLHMEGNSSLNLVKVFNSLSKLKTLNSLCVGNTNITDDMC 532

Query:   182 RSLQVLTKLEYLDLW-GSQVSNRGAAVLKMFPRLSFLNLAWT------GVTKLPNISSLE 234
             + L +LT L +LD+   +Q+ N+G   +     L  L+++        G+  L ++S+L+
Sbjct:   533 KPLSLLTTLTHLDVARNTQLGNQGLESISKCVNLIDLDISCCTKINALGIRHLGSLSNLQ 592

Query:   235 CLNLSNCTIDS-ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS------ 287
              L+  NC ID   ++       L+ +SL    F ++  A      +LL+ LD+S      
Sbjct:   593 SLSAENCAIDDESMKYIGTLKSLSSLSLINNPF-SDTGAKNIGNLTLLTTLDLSMCANIT 651

Query:   288 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
             +++L  F  LTQ+  L +L+   ++       +   +G  L+ L +
Sbjct:   652 DAALVHFKNLTQISKL-NLNFCGNLTDSGVTSLTGGLG-QLKTLGI 695

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 106/420 (25%), Positives = 190/420 (45%)

Query:   119 ELDLSRCVKV-----TDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG 173
             ELDLS C  +     +++ +++L  ++TL+   LS         + + +L +L+ LDL  
Sbjct:    99 ELDLS-CSSLHGRFHSNSSIRNLHFLTTLD---LSFNDFKGQITSSIENLSHLTYLDLSS 154

Query:   174 LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV-----TKLP 228
                +  +L S+  L++L YL+L+ +Q S +  + +     L+FL+L++        + + 
Sbjct:   155 NHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQFPSSIG 214

Query:   229 NISSLECLNL-SNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV- 286
              +S L  L+L SN     I     N + L  + L+   F  +  +F+    S L+FL + 
Sbjct:   215 GLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIG-NLSQLTFLGLF 273

Query:   287 SNSSL----SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
             SN+ +    S F  L Q+  L ++D  + + G+    ++   G +L  L+LSN +F+   
Sbjct:   274 SNNFVGEIPSSFGNLNQLTRL-YVD-DNKLSGNFPNVLLNLTGLSL--LSLSNNKFTGTL 329

Query:   343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSA 402
                +   L NL     S         S++  +PSL +I ++   +KG    G ++   + 
Sbjct:   330 PPNITS-LSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNL 388

Query:   403 YCFMIVYNLFLHAYGYVIFPSSVLAGF---IQQVGAETDLVLSLTA-LQNLNHLERLNLE 458
             Y   I  N F+      I  S ++  F   I  +  +  +  S+ + L++L  L   +L 
Sbjct:   389 YELDIGNNNFIGPIPSSI--SKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLN 446

Query:   459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 518
              T   D   F LS FK L+ L L   S   VS    SS+S   +  I+   L+  G+  F
Sbjct:   447 TTTRIDLNYF-LSYFKRLLLLDL---SGNHVSATNKSSVSDPPSQLIQSLYLSGCGITEF 502

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 109/441 (24%), Positives = 186/441 (42%)

Query:    76 NSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135
             N +   +   L   R L +L++ +  R+T +    ++ ++ LK  D +     T      
Sbjct:   314 NKLSGSFPIALLNLRKLSTLSLFN-NRLTGTLPSNMSSLSNLKLFDATEN-HFTGPLPSS 371

Query:   136 LLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 194
             L +I +L+ + L    L    G   +SS  NL+VL LG       + RS+  L  L+ LD
Sbjct:   372 LFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELD 431

Query:   195 LWGSQVSNRGAAVLKMFPRLS---FLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE 251
             L  S  + +G     +F  L    +LNL+    T    I   E L+ S   +D++     
Sbjct:   432 L--SNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTT--TIDMYEILS-SFKLLDTLDLSGS 486

Query:   252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSS 310
             + +   K SL+ ++ +            L+S L +S   ++ F  FL   + +  LD+S+
Sbjct:   487 HVSTTNKSSLSNSSLV------------LISQLYLSGCGITEFPKFLRSQELMLTLDISN 534

Query:   311 SMIGDDSVEMVACVGANLRNLNLSNTRF----SSAGVGILA-GHLPNLEILSLSGTQIDD 365
             + I       +  +   L  +NLSN  F     S  +G+ +    P +  L  S      
Sbjct:   535 NKIKGQVPGWLWMLPV-LNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFTG 593

Query:   366 YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV 425
                S++  +P L  +D SN    G  P+   N+  S Y  +   NL  H     + P ++
Sbjct:   594 NIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQ-SPY--LQALNL-RHNRLSGLLPENI 649

Query:   426 LAGFIQQVGAETDLVLSLT-ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR-N 483
                 I        LV  L  +L +++ L  LN+E  ++SD     LS+ +EL  L LR N
Sbjct:   650 FESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVLRSN 709

Query:   484 ASLTDVSLHQLSSLSKLTNLS 504
             A    +   Q S L ++ ++S
Sbjct:   710 AFYGPIEKTQFSKL-RIIDIS 729

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 78/298 (26%), Positives = 136/298 (45%)

Query:   115 TCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDL-- 171
             T L+ LD  R  + +T  G   +  +  L +L LS   LT+    L  +L +L  LDL  
Sbjct:   332 TSLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALTSLPYCL-GNLTHLRTLDLSN 390

Query:   172 ----GGLP--VTDL--VLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222
                 G L   V+ L  VL  L +L    +   L+ S V+     V K+  ++  + +  T
Sbjct:   391 NQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQ-T 449

Query:   223 GVTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLL 281
               +  P +  L+ L LSNC++ S + G   ++  L  + L+          +L    + L
Sbjct:   450 ESSWAP-LFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRL 508

Query:   282 SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341
               + +S +SL++      +  L+ LD+SS+MI D   E +  V  NLR +N S+  F   
Sbjct:   509 QTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGT 568

Query:   342 GVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNV 398
              +    G + +L++L +S   +     I ++S   SL+ + +SN  ++G   S   N+
Sbjct:   569 -IPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANL 625

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 86/323 (26%), Positives = 152/323 (47%)

Query:    92 LRSLNVADCRRVTSSALWA--LTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLS 148
             + SLN++ C  +T + L    +  +  L+ L+LS C ++TD+ +  +   +  LE L L 
Sbjct:    92 IESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLG 151

Query:   149 E-TGLTADGIALLS-SLQNLSVLDLGGLP-VTDLVLRSLQVLTK--------LEYLDLWG 197
               + +T  G+ L++  L NL  L+L     V+D+ +  L  +T+        LE+L L  
Sbjct:   152 GCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQD 211

Query:   198 SQ-VSNRGAA-VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP 255
              Q +++     + K   +L  LNL++ G      IS    ++LS+ T    L    N   
Sbjct:   212 CQKLTDLSLKHISKGLNKLKVLNLSFCG-----GISDAGMIHLSHMTQLWTL----NLRS 262

Query:   256 LAKISLAGTTFINEREAFLYIETSL-LSFLD-VSNSSLSRFCFLTQ-MKALEHLDLSSSM 312
                IS  G   ++     LY    L +SF D V + SL+   ++ Q +  L+ L L S  
Sbjct:   263 CDNISDTGIMHLSMGALRLY---GLDVSFCDKVGDQSLA---YIAQGLYQLKSLSLCSCH 316

Query:   313 IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISY 370
             I DD +  +      L+ LN+    R +  G+ ++A HL  L  + L G T+I    +  
Sbjct:   317 ISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLER 376

Query:   371 MSMMPSLKFIDIS---NTDIKGM 390
             ++ +P LK +++     T++KG+
Sbjct:   377 ITQLPCLKVLNLGLWQMTEVKGL 399

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 85/319 (26%), Positives = 152/319 (47%)

Query:    66 NAEAIELRG-ENSVD-AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDL 122
             N E++ L G  N  D     A++     LR+LN++ C+++T S+L  +   +  L+ L+L
Sbjct:    91 NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLEL 150

Query:   123 SRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLV 180
               C  +T+ G+  +   +  L+ L L      +D GI  L+ +   S  + G L +  L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR-SAAE-GCLGLEQLT 208

Query:   181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN-LAWTGVTKLPNISSLECLNLS 239
             L+  Q LT     DL    +S RG   L++   LSF   ++  G+  L ++ SL  LNL 
Sbjct:   209 LQDCQKLT-----DLSLKHIS-RGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSLNLR 261

Query:   240 NCTIDSILEGNENKAPLAKISLAG--TTFINE--REAFLYIETSL-----LSFLD--VSN 288
             +C  D+I +       +  + L+G   +F ++   ++  YI   L     LS     +S+
Sbjct:   262 SC--DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query:   289 SSLSRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGIL 346
               ++R   + QM  L  L++   + I D  +E++A   + L  ++L   TR +  G+  +
Sbjct:   320 DGINRM--VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 377

Query:   347 AGHLPNLEILSLSGTQIDD 365
                LP L++L+L   Q+ D
Sbjct:   378 T-QLPCLKVLNLGLWQMTD 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 85/319 (26%), Positives = 152/319 (47%)

Query:    66 NAEAIELRG-ENSVD-AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDL 122
             N E++ L G  N  D     A++     LR+LN++ C+++T S+L  +   +  L+ L+L
Sbjct:    91 NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLEL 150

Query:   123 SRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLV 180
               C  +T+ G+  +   +  L+ L L      +D GI  L+ +   S  + G L +  L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR-SAAE-GCLGLEQLT 208

Query:   181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN-LAWTGVTKLPNISSLECLNLS 239
             L+  Q LT     DL    +S RG   L++   LSF   ++  G+  L ++ SL  LNL 
Sbjct:   209 LQDCQKLT-----DLSLKHIS-RGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSLNLR 261

Query:   240 NCTIDSILEGNENKAPLAKISLAG--TTFINE--REAFLYIETSL-----LSFLD--VSN 288
             +C  D+I +       +  + L+G   +F ++   ++  YI   L     LS     +S+
Sbjct:   262 SC--DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query:   289 SSLSRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGIL 346
               ++R   + QM  L  L++   + I D  +E++A   + L  ++L   TR +  G+  +
Sbjct:   320 DGINRM--VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 377

Query:   347 AGHLPNLEILSLSGTQIDD 365
                LP L++L+L   Q+ D
Sbjct:   378 T-QLPCLKVLNLGLWQMTD 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

RGD|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 85/319 (26%), Positives = 152/319 (47%)

Query:    66 NAEAIELRG-ENSVD-AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDL 122
             N E++ L G  N  D     A++     LR+LN++ C+++T S+L  +   +  L+ L+L
Sbjct:    91 NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLEL 150

Query:   123 SRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLV 180
               C  +T+ G+  +   +  L+ L L      +D GI  L+ +   S  + G L +  L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR-SAAE-GCLGLEQLT 208

Query:   181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN-LAWTGVTKLPNISSLECLNLS 239
             L+  Q LT     DL    +S RG   L++   LSF   ++  G+  L ++ SL  LNL 
Sbjct:   209 LQDCQKLT-----DLSLKHIS-RGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSLNLR 261

Query:   240 NCTIDSILEGNENKAPLAKISLAG--TTFINE--REAFLYIETSL-----LSFLD--VSN 288
             +C  D+I +       +  + L+G   +F ++   ++  YI   L     LS     +S+
Sbjct:   262 SC--DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query:   289 SSLSRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGIL 346
               ++R   + QM  L  L++   + I D  +E++A   + L  ++L   TR +  G+  +
Sbjct:   320 DGINRM--VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 377

Query:   347 AGHLPNLEILSLSGTQIDD 365
                LP L++L+L   Q+ D
Sbjct:   378 T-QLPCLKVLNLGLWQMTD 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	632
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 53/278 (19%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTD--AGMKHLLSISTLEKLWLSE 149
           L         R   S L  LT    L+ELDLS      D    ++ LL  S+L++L L+ 
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 150 TGLTADGI-----ALLSSLQNLSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLWGSQV 200
            GL   G+      L      L  L LG   +      +    L+    L+ L+L  + +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 201 SNRGAAVL----KMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDSIL 247
            + G   L    K    L  L+L   G+T          L ++ SLE LNL +  +    
Sbjct: 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-- 235

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-----FC-FLTQMK 301
                 A  A ++           A L    SLL+ L +S + ++          L + +
Sbjct: 236 ------AGAAALA----------SALLSPNISLLT-LSLSCNDITDDGAKDLAEVLAEKE 278

Query: 302 ALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSN 335
           +L  LDL  +  G++  +++A      G  L +L + +
Sbjct: 279 SLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 9e-07
 Identities = 104/440 (23%), Positives = 166/440 (37%), Gaps = 71/440 (16%)

Query: 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197
           SI  LE L LS   L+ +    + S  +L VLDLGG  +   +  SL  LT LE+L L  
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVT-KLPN----ISSLECLNLS-NCTIDSILEGNE 251
           +Q+  +    L     L ++ L +  ++ ++P     ++SL  L+L  N     I     
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLS 309
           N   L  + L            ++    L+S LD+S++SLS      + Q++ LE L L 
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSA----------------GVGILAGHLP-- 351
           S+         +  +   L+ L L + +FS                      L G +P  
Sbjct: 317 SNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 352 -----NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM 406
                NL  L L    ++      +    SL+ + + +    G  PS    +        
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-------P 428

Query: 407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN---------------- 450
           +VY L +         ++ L G I     +      + +LQ L+                
Sbjct: 429 LVYFLDI--------SNNNLQGRINSRKWD------MPSLQMLSLARNKFFGGLPDSFGS 474

Query: 451 -HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509
             LE L+L + Q S A    L +  EL+ L L    L+     +LSS  KL +L +    
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 510 LTNSGLGSFKPPRSLKLLDL 529
           L+     SF     L  LDL
Sbjct: 535 LSGQIPASFSEMPVLSQLDL 554

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 9e-06
 Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 18/279 (6%)

Query: 127 KVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV 186
           K++      + S+  L  L LS+  L+ +   L+  LQNL +L L     T  +  +L  
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-KLPN--ISSLECLNL---SN 240
           L +L+ L LW ++ S      L     L+ L+L+   +T ++P    SS     L   SN
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 241 CTIDSILEGNENKAPLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CF 296
                I +       L ++ L   +F  E   E   + +  L+ FLD+SN++L       
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE---FTKLPLVYFLDISNNNLQGRINSR 447

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEI 355
              M +L+ L L+ +        +    G+  L NL+LS  +FS A V    G L  L  
Sbjct: 448 KWDMPSLQMLSLARNKF---FGGLPDSFGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQ 503

Query: 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG 394
           L LS  ++       +S    L  +D+S+  + G  P+ 
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 40/172 (23%)

Query: 85  YLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
            L     L+ L +   + +    L AL      L+ LDL  C  +TD+G   +++++T  
Sbjct: 47  QLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSG---IVALAT-- 101

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLG----GLPVTDLVLRSL-QVLTKLEYLDLWGS 198
                             +   L  ++LG    G  +TD+ L +L +  T L+ +   G 
Sbjct: 102 ------------------NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143

Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGN 250
            V+++G              LA      L  +S   C NL++ +I +IL  N
Sbjct: 144 DVTDKG-----------VWELASGCSKSLERLSLNNCRNLTDQSIPAILASN 184

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 10/237 (4%)

Query: 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191
           G ++LL++  L  L L+   L ++   LL  L NL+ LDL    +TD+      + + L+
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSIL 247
            LDL  +++ +  + +  + P L  L+L++  ++ LP    N+S+L  L+LS   I  + 
Sbjct: 144 ELDLSDNKIESLPSPLRNL-PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307
              E  + L ++ L+  + I    + L    +L      +N        +  +  LE LD
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           LS++ I   S         NLR L+LS    S+A   I    L    +L+L  T   
Sbjct: 262 LSNNQISSISSLGSL---TNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 275 YIETSLLSFLDVSNSSLS-----RFCFLTQMKALEHLDLSSSMIGDDSVEMVAC----VG 325
             +   L  LD+S+++L          L +  +L+ L L+++ +GD  + ++A     + 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 326 ANLRNLNLSNTRFSSAGVGILAG---HLPNLEILSLSGTQIDDYAISY----MSMMPSLK 378
             L  L L   R   A    LA       +L+ L+L+   I D  I      +    +L+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 379 FIDISNTDI 387
            +D++N  +
Sbjct: 197 VLDLNNNGL 205

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 49/277 (17%)

Query: 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETS 279
           W G+T   N S +  ++LS   I   +     + P +  I+L+           ++  +S
Sbjct: 60  WQGIT-CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118

Query: 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339
            L +L++SN++ +       +  LE LDLS++M+   S E+   +G+       S+ +  
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML---SGEIPNDIGS------FSSLKVL 169

Query: 340 SAGVGILAGHLPN-------LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYP 392
             G  +L G +PN       LE L+L+  Q+       +  M SLK+I +   ++ G  P
Sbjct: 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Query: 393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452
             ++    S     +VYN               L G I             ++L NL +L
Sbjct: 230 Y-EIGGLTSLNHLDLVYN--------------NLTGPIP------------SSLGNLKNL 262

Query: 453 ERLNLEQTQVSDATLFPLSTF--KELIHLSLRNASLT 487
           + L L Q ++S     P S F  ++LI L L + SL+
Sbjct: 263 QYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
           NL++L+LSN R +    G   G LPNL++L LSG  +   +    S +PSL+ +D+S  +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 387 I 387
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	632
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG4341	483	consensus F-box protein containing LRR [General fu	99.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.31
KOG4341	483	consensus F-box protein containing LRR [General fu	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
PLN03150	623	hypothetical protein; Provisional	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
PLN03150	623	hypothetical protein; Provisional	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
KOG4308	478	consensus LRR-containing protein [Function unknown	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG4308	478	consensus LRR-containing protein [Function unknown	97.42
PRK15386	426	type III secretion protein GogB; Provisional	97.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.27
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.01
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.54
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.94
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.3
smart00370	26	LRR Leucine-rich repeats, outliers.	89.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.03
smart00370	26	LRR Leucine-rich repeats, outliers.	87.03
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.01
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	85.79
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.42
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.37

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-49  Score=461.03  Aligned_cols=505  Identities=19%  Similarity=0.191  Sum_probs=382.2

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHh-hhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      .+++.|+|++| .+.+..+..|..+++|++|+|++|. +++..+.. +.++++|++|++++| .+++..+.  +.+++|+
T Consensus        69 ~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCC
Confidence            46899999998 4666667888999999999999998 66444444 458999999999998 55543332  4688999


Q ss_pred             EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC
Q 006752          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG  223 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  223 (632)
                      +|++++|.+++..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            99999999988888889999999999999999988888899999999999999999998899999999999999999998


Q ss_pred             CCC-----CCCCCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--h
Q 006752          224 VTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--C  295 (632)
Q Consensus       224 l~~-----l~~l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~  295 (632)
                      +.+     +.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+.  .
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCCh
Confidence            774     457899999999999987 6777888999999999999988764332 345789999999999998765  5


Q ss_pred             hhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCC
Q 006752          296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP  375 (632)
Q Consensus       296 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  375 (632)
                      .+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+++..+..+ +.+++|+.|++++|++++..|..+..++
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence            67888999999999999998888888877 899999999999988877776 6789999999999999988888898899


Q ss_pred             CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccccc--chHHhhcCCccc
Q 006752          376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVL--SLTALQNLNHLE  453 (632)
Q Consensus       376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~--~~~~l~~l~~L~  453 (632)
                      +|+.|++++|++.+.+|..+..+                             ..++.+++++|.+.  ....+.++++|+
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~-----------------------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~  431 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGAC-----------------------------RSLRRVRLQDNSFSGELPSEFTKLPLVY  431 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCC-----------------------------CCCCEEECcCCEeeeECChhHhcCCCCC
Confidence            99999999999998877754321                             23444555555442  123566666677


Q ss_pred             ccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCc
Q 006752          454 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  533 (632)
Q Consensus       454 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~  533 (632)
                      .|++++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..+++|+.|++++|.
T Consensus       432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  510 (968)
T PLN00113        432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK  510 (968)
T ss_pred             EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence            77777777766666666666667777777776666555544 34666677777777666666666666666777777766


Q ss_pred             ccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhh------hcccCCCCCCCccchhcccccCHHHH
Q 006752          534 LLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREEL  607 (632)
Q Consensus       534 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~------~n~~~~~~~~~~~~~~~~~~~~~~~~  607 (632)
                      + .+..+..+. ..+       ..+.+++++|+++|.+|..++.+..+      .|+++|.+|.....      .+.++.
T Consensus       511 l-~~~~p~~~~-~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~  575 (968)
T PLN00113        511 L-SGEIPDELS-SCK-------KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN------VESLVQ  575 (968)
T ss_pred             c-eeeCChHHc-Ccc-------CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc------CcccCE
Confidence            5 222222221 111       12445566677777776666655444      56666643322222      235667


Q ss_pred             HHhhcccccccCCCC
Q 006752          608 LELQYSSLSLARPDD  622 (632)
Q Consensus       608 l~l~~n~l~g~ip~~  622 (632)
                      +++++|+++|.||..
T Consensus       576 l~ls~N~l~~~~p~~  590 (968)
T PLN00113        576 VNISHNHLHGSLPST  590 (968)
T ss_pred             EeccCCcceeeCCCc
Confidence            788888888888854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-47  Score=444.41  Aligned_cols=487  Identities=21%  Similarity=0.200  Sum_probs=308.1

Q ss_pred             cCcccEEeccCCCCCCHHHHH-HhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCc
Q 006752           64 KHNAEAIELRGENSVDAEWMA-YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL  142 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L  142 (632)
                      .++|+.|+|++|. +.+.++. .+..+++|++|++++|. +++..+  ...+++|++|++++| .+....+..++++++|
T Consensus        92 l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p--~~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         92 LPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP--RGSIPNLETLDLSNN-MLSGEIPNDIGSFSSL  166 (968)
T ss_pred             CCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCc-cccccC--ccccCCCCEEECcCC-cccccCChHHhcCCCC
Confidence            4678888888884 4433443 34577888888888877 544332  245677777777777 5555556667777777


Q ss_pred             cEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC
Q 006752          143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT  222 (632)
Q Consensus       143 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  222 (632)
                      ++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            77777777777667777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCC-----CCCCCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--
Q 006752          223 GVTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--  294 (632)
Q Consensus       223 ~l~~-----l~~l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--  294 (632)
                      .+++     +.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+.  
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~  325 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIP  325 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCC
Confidence            6653     345677777777777776 4566666777777777777776654332 234667777777777777654  


Q ss_pred             hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcC
Q 006752          295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  374 (632)
Q Consensus       295 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  374 (632)
                      ..+..+++|+.|++++|.+.+..|..+... ++|+.|++++|++++..+..+ ..+++|+.|++++|.+.+..|..+..+
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~  403 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGAC  403 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhH-hCcCCCCEEECcCCEecccCCHHHhCC
Confidence            456667777777777777776666666665 677777777777766666555 345667777777776666666666666


Q ss_pred             CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccccc-ccchhhhccccccccc-chHHhhcCCcc
Q 006752          375 PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV-LAGFIQQVGAETDLVL-SLTALQNLNHL  452 (632)
Q Consensus       375 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~l~-~~~~l~~l~~L  452 (632)
                      ++|+.|++++|++++..|..+..+ ..+..+....|.+.+     .+|... ....++.+++++|.+. .++.....++|
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L  477 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQG-----RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL  477 (968)
T ss_pred             CCCCEEECcCCEeeeECChhHhcC-CCCCEEECcCCcccC-----ccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence            677777777776666655543221 111111111111111     011110 1234555666655542 12223344566


Q ss_pred             cccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752          453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  532 (632)
Q Consensus       453 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N  532 (632)
                      +.|++++|++++..|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|+.||+++|
T Consensus       478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  557 (968)
T PLN00113        478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN  557 (968)
T ss_pred             eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCC
Q 006752          533 WLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPS  573 (632)
Q Consensus       533 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~  573 (632)
                      ++ .+..+..+.. ..       .....++++|+++|.+|.
T Consensus       558 ~l-~~~~p~~l~~-l~-------~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        558 QL-SGEIPKNLGN-VE-------SLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cc-cccCChhHhc-Cc-------ccCEEeccCCcceeeCCC
Confidence            65 3333322221 11       124455566666666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-41  Score=332.62  Aligned_cols=385  Identities=20%  Similarity=0.262  Sum_probs=279.9

Q ss_pred             EEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCC
Q 006752          119 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS  198 (632)
Q Consensus       119 ~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  198 (632)
                      .||+++| .+.+..+..|.++++|+++++.+|.++. +|..-....+|+.|+|.+|.|+....+.++.++.|+.|||+.|
T Consensus        82 ~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   82 TLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeecccc-ccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            3444444 3444444444444455555554444442 2322222334555555555554444444444555555555555


Q ss_pred             CCCchhhHhhcCCCCCcEEEccCCCCCC-----CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhh
Q 006752          199 QVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREA  272 (632)
Q Consensus       199 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~  272 (632)
                      .|+...-..|..-.++++|+|++|.|+.     +..+.+|..|.|+.|+++.+|...+ ++++|+.|+|..|++.-+ ..
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-e~  238 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-EG  238 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-hh
Confidence            5544333344444455555555555543     3345566667777777777776655 477777777777776543 23


Q ss_pred             hhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcC
Q 006752          273 FLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL  350 (632)
Q Consensus       273 ~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  350 (632)
                      ..|..+++|+.|.+..|.+...  ..|..+.++++|+++.|+++...-.++.++ ++|+.|++++|.|....+..+ ..+
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~W-sft  316 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFT  316 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchh-hhc
Confidence            4677888888888888888777  678888899999999999888777788888 899999999998888777777 668


Q ss_pred             CCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchh
Q 006752          351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFI  430 (632)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  430 (632)
                      ++|++|+|++|+++...+..|..+..|+.|+|++|.+... .+                                     
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e-------------------------------------  358 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AE-------------------------------------  358 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-Hh-------------------------------------
Confidence            8999999999999888888898899999999999988765 22                                     


Q ss_pred             hhcccccccccchHHhhcCCcccccccCccCCCCCcc---ccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752          431 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL---FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  507 (632)
Q Consensus       431 ~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~  507 (632)
                                   .+|..+++|++|||++|.++..+.   ..|.++++|+.|+|.+|++..+.-.+|.++++|+.|||.+
T Consensus       359 -------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  359 -------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             -------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC
Confidence                         378889999999999998876543   4478899999999999999998889999999999999999


Q ss_pred             ceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeecccccc
Q 006752          508 AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVIC  560 (632)
Q Consensus       508 N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (632)
                      |.|..+-|++|..+ .|+.|-+..-.|.|+|.++|+.+|.............|
T Consensus       426 NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~C  477 (873)
T KOG4194|consen  426 NAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKC  477 (873)
T ss_pred             Ccceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeec
Confidence            99999999999999 99999999999999999999999986655544444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=307.96  Aligned_cols=361  Identities=20%  Similarity=0.298  Sum_probs=247.0

Q ss_pred             CccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752           91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIALLSSLQNLSVL  169 (632)
Q Consensus        91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  169 (632)
                      .-+.|++++|. +.+..+..|.++++|+++++.+| .++.  ++.++ ...+|+.|+|.+|.|+......+..++.|++|
T Consensus        79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL  154 (873)
T ss_pred             ceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence            34456666666 66666666666666666666666 3332  22233 33446666666666666555666666666666


Q ss_pred             EcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECCCCccc
Q 006752          170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTID  244 (632)
Q Consensus       170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~~~~l~  244 (632)
                      ||+.|.|+...-..|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++.+|     ++++|+.|+|..|++.
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            66666666554445555566666666666666666666666666666666666666554     4666666666666665


Q ss_pred             ch-hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHH
Q 006752          245 SI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMV  321 (632)
Q Consensus       245 ~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~  321 (632)
                      .+ --.+.++++|+.|.+..|++...... .|..+.++++|+|..|++..+  .++-+++.|+.|++++|.|....++.+
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG-~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDG-AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCc-ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence            43 22334666677777777666655443 455677777777777777766  667777888888888888777777766


Q ss_pred             HhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhh
Q 006752          322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFS  401 (632)
Q Consensus       322 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  401 (632)
                      ... ++|++|++++|+++...+..+ ..+..|++|.|++|.++.....+|..+++|+.|||++|.++..+.+.-      
T Consensus       314 sft-qkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa------  385 (873)
T KOG4194|consen  314 SFT-QKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA------  385 (873)
T ss_pred             hhc-ccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch------
Confidence            665 788888888888877777766 457788888888888877777777788888888888888877655521      


Q ss_pred             hhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccc
Q 006752          402 AYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL  481 (632)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  481 (632)
                                                                ..|.++++|+.|+|.+|++..+.-.+|.+++.|++|||
T Consensus       386 ------------------------------------------~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  386 ------------------------------------------VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             ------------------------------------------hhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence                                                      35677788888888888887766677888888888888


Q ss_pred             ccccCCCcchhhhccCCCCcEEeecC
Q 006752          482 RNASLTDVSLHQLSSLSKLTNLSIRD  507 (632)
Q Consensus       482 s~n~l~~~~~~~~~~l~~L~~L~ls~  507 (632)
                      .+|.|..+-|.+|..+ .|+.|.+..
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcc
Confidence            8888888778888777 777776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=1.7e-33  Score=267.01  Aligned_cols=427  Identities=17%  Similarity=0.172  Sum_probs=280.5

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccE
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK  144 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~  144 (632)
                      ..+++|++++|+..  ..+++++.+..++.++.++|+ +. ..+..+..+..|+.|++++|. +.. .+..++.+-.|+.
T Consensus        68 ~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~-ls-~lp~~i~s~~~l~~l~~s~n~-~~e-l~~~i~~~~~l~d  141 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNK-LS-ELPEQIGSLISLVKLDCSSNE-LKE-LPDSIGRLLDLED  141 (565)
T ss_pred             cceeEEEeccchhh--hCCHHHHHHHHHHHhhcccch-Hh-hccHHHhhhhhhhhhhccccc-eee-cCchHHHHhhhhh
Confidence            34666666666322  344556666666777777666 43 345566666777777777763 332 2445566667777


Q ss_pred             EEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCC
Q 006752          145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV  224 (632)
Q Consensus       145 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  224 (632)
                      ++..+|+++. .|..+..+.+|..+++.+|++....|..+. ++.|++||...|-+. ..|..++.+.+|..|++..|++
T Consensus       142 l~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  142 LDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI  218 (565)
T ss_pred             hhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence            7777777664 445566666777777777777665554444 777777777777664 4566677777777777877776


Q ss_pred             CC---CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhc
Q 006752          225 TK---LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQ  299 (632)
Q Consensus       225 ~~---l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~  299 (632)
                      ..   |++|..|++++++.|.+..+|+... .++++..|++.+|++...|....  -+.+|++||+++|.+++. ..+++
T Consensus       219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgn  296 (565)
T KOG0472|consen  219 RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGN  296 (565)
T ss_pred             ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCccccc
Confidence            64   4466677777777777777776655 77777777777777777776543  456777777777777777 56666


Q ss_pred             CCCCCeeeccCCCCCch-----------HHHHHHh-----------------------------cCCCCcEEEccCCcCc
Q 006752          300 MKALEHLDLSSSMIGDD-----------SVEMVAC-----------------------------VGANLRNLNLSNTRFS  339 (632)
Q Consensus       300 ~~~L~~L~l~~n~l~~~-----------~~~~~~~-----------------------------~~~~L~~L~l~~n~l~  339 (632)
                      + +|+.|.+.+|.+...           ....+..                             ...+.+.|++++-+++
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence            6 777777777754311           0011100                             0024566777776666


Q ss_pred             chhHHHHHhc-CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccc
Q 006752          340 SAGVGILAGH-LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGY  418 (632)
Q Consensus       340 ~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (632)
                      ....+.|-.. -.-.+..+++.|++. +.|..+..+..+.+.-+..|+..+.+|..++.                     
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~---------------------  433 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQ---------------------  433 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHh---------------------
Confidence            5555444211 113567777777765 34444444444433333333333333332211                     


Q ss_pred             cccccccccchhhhcccccccccch-HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccC
Q 006752          419 VIFPSSVLAGFIQQVGAETDLVLSL-TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL  497 (632)
Q Consensus       419 ~~~~~~~~~~~l~~l~~~~~~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  497 (632)
                              ...+..|++++|.+-.+ ..++.+..||.||+++|++.. .|..+..+..++.+-.++|++....|+.+.++
T Consensus       434 --------l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  434 --------LQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             --------hhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence                    12344445554444222 356777889999999998877 78887778888888889999999889889999


Q ss_pred             CCCcEEeecCceeccCCCCCCCCCCCcceEecCCCccc
Q 006752          498 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL  535 (632)
Q Consensus       498 ~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~  535 (632)
                      .+|..||+.+|.+..+ |..++++.+|++|++++|+|.
T Consensus       505 ~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence            9999999999999985 888999999999999999984

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.2e-31  Score=264.16  Aligned_cols=362  Identities=22%  Similarity=0.222  Sum_probs=176.8

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL  169 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  169 (632)
                      +-.|-.++++|.+-.+..|.....+++++.|.|... .+. ..|+.++.+.+|++|.+++|++.. .-..++.++.|+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            344444555544222334444444444444444443 221 223344444444444444444432 22234444444444


Q ss_pred             EcCCCCCChH-HHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhc
Q 006752          170 DLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE  248 (632)
Q Consensus       170 ~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~  248 (632)
                      .+..|++... +|..+..+..|+.|||++|++. ..|..+...                   +++-.|+|++|+|..+|.
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-------------------Kn~iVLNLS~N~IetIPn  143 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-------------------KNSIVLNLSYNNIETIPN  143 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh-------------------cCcEEEEcccCccccCCc
Confidence            4444443211 2333334444444444444443 223333333                   334444444444444444


Q ss_pred             ccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCC-CchHHHHHHhc
Q 006752          249 GNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMI-GDDSVEMVACV  324 (632)
Q Consensus       249 ~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~~  324 (632)
                      .++ ++..|-.|++++|++...|+...  .+..|++|++++|.+..+  ..+..+++|+.|.+++.+- .+.+|..+.++
T Consensus       144 ~lfinLtDLLfLDLS~NrLe~LPPQ~R--RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l  221 (1255)
T KOG0444|consen  144 SLFINLTDLLFLDLSNNRLEMLPPQIR--RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL  221 (1255)
T ss_pred             hHHHhhHhHhhhccccchhhhcCHHHH--HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence            433 44444444444444444444322  344444444444444433  3334444445555554321 12334444444


Q ss_pred             CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752          325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC  404 (632)
Q Consensus       325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  404 (632)
                       .+|..++++.|.+... |..+ -.+++|+.|+||+|+|+... .....-.+|++|++|.|+++.. |.           
T Consensus       222 -~NL~dvDlS~N~Lp~v-Pecl-y~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~L-P~-----------  285 (1255)
T KOG0444|consen  222 -HNLRDVDLSENNLPIV-PECL-YKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVL-PD-----------  285 (1255)
T ss_pred             -hhhhhccccccCCCcc-hHHH-hhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccc-hH-----------
Confidence             4555555555544422 2222 23445555555555544211 1122333455555555555442 33           


Q ss_pred             hhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCC-ccccccCccccccccccc
Q 006752          405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRN  483 (632)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~  483 (632)
                                                              ++..+++|+.|.+.+|+++-. +|..++.+.+|+++..++
T Consensus       286 ----------------------------------------avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan  325 (1255)
T KOG0444|consen  286 ----------------------------------------AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN  325 (1255)
T ss_pred             ----------------------------------------HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence                                                    456667777777777755421 567777777777777777


Q ss_pred             ccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       484 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      |++.- .|+.++.|+.|+.|.|++|++.+. |+.+.-++.|+.||+..|+-
T Consensus       326 N~LEl-VPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  326 NKLEL-VPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             ccccc-CchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcC
Confidence            77764 677777777777777777777664 77777777777777777763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=3.5e-31  Score=275.85  Aligned_cols=435  Identities=21%  Similarity=0.240  Sum_probs=297.2

Q ss_pred             hhhcccCCcHHHHH-HHHHHHHhcccc---chhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCc
Q 006752           30 QRRSLERLPAHLAD-SLLRHLIRRRLI---FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS  105 (632)
Q Consensus        30 ~~~~l~~lp~~l~~-~~l~~L~~~~~~---~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~  105 (632)
                      +...++.+|..+-. +.+..+...+-.   .|--+-.-+-+|+.||++.|.  -..++..+..+.+|+.|+++.|. +..
T Consensus         6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~-i~~   82 (1081)
T KOG0618|consen    6 SDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNY-IRS   82 (1081)
T ss_pred             ccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccc--cccCCchhhhHHHHhhcccchhh-Hhh
Confidence            44667778876554 223322211111   221111113347788888773  22344555666778888888766 543


Q ss_pred             hhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCC-------------------C
Q 006752          106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN-------------------L  166 (632)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-------------------L  166 (632)
                       .+.+..++.+|++|.|.+|.  ....+..+..+.+|++|++++|.+... |..+..+..                   .
T Consensus        83 -vp~s~~~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~i  158 (1081)
T KOG0618|consen   83 -VPSSCSNMRNLQYLNLKNNR--LQSLPASISELKNLQYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSI  158 (1081)
T ss_pred             -Cchhhhhhhcchhheeccch--hhcCchhHHhhhcccccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccc
Confidence             33566677888888888773  334456677778888888888876542 222222222                   4


Q ss_pred             CEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC--------------------
Q 006752          167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--------------------  226 (632)
Q Consensus       167 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--------------------  226 (632)
                      +.+++..|.+.+.++..+..+..  .|+|.+|.+...   .+..+++|+.+....|+++.                    
T Consensus       159 k~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~  233 (1081)
T KOG0618|consen  159 KKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT  233 (1081)
T ss_pred             hhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCccee
Confidence            44555555555555544444444  577777776522   23344444444444443332                    


Q ss_pred             C---CCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCC
Q 006752          227 L---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA  302 (632)
Q Consensus       227 l---~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~  302 (632)
                      +   +.-.+|++++++.+++..+|.++..+.+|+.+....|.+...+....  ...+|+.|++..|.+..+ +.....+.
T Consensus       234 ~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~s  311 (1081)
T KOG0618|consen  234 LDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKS  311 (1081)
T ss_pred             eccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccce
Confidence            1   12357778888888888888888888888888888888866665432  567788888888888877 45555888


Q ss_pred             CCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEc
Q 006752          303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI  382 (632)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L  382 (632)
                      |++|++..|++.......+.....++..|+.+.|++....... -...+.|+.|++.+|.+++.....+.+++.|+.|+|
T Consensus       312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            8999998888876544444433234777888888776543211 134567999999999999998888999999999999


Q ss_pred             cCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCC
Q 006752          383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV  462 (632)
Q Consensus       383 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l  462 (632)
                      ++|++... |+                                                  ..+.++..|+.|+||+|.+
T Consensus       391 syNrL~~f-pa--------------------------------------------------s~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  391 SYNRLNSF-PA--------------------------------------------------SKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             cccccccC-CH--------------------------------------------------HHHhchHHhHHHhcccchh
Confidence            99999875 65                                                  3678899999999999999


Q ss_pred             CCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCc
Q 006752          463 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  533 (632)
Q Consensus       463 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~  533 (632)
                      +. +|..+..++.|++|...+|.+.. .| .+..++.|+.+|+|.|+++......-.+.++|++||+++|.
T Consensus       420 ~~-Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  420 TT-LPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hh-hhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            98 67999999999999999999998 55 88899999999999999988765554455899999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.4e-30  Score=259.58  Aligned_cols=364  Identities=18%  Similarity=0.205  Sum_probs=279.1

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccE
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK  144 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~  144 (632)
                      +-++-.|+++|.+..+.+|.....+++++-|.|...+ +. ..|+.++.|.+|++|.+++|. +.. ....+..++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~-~vPeEL~~lqkLEHLs~~HN~-L~~-vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LE-QVPEELSRLQKLEHLSMAHNQ-LIS-VHGELSDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hh-hChHHHHHHhhhhhhhhhhhh-hHh-hhhhhccchhhHH
Confidence            4588999999987778899999999999999999876 54 467889999999999999994 433 3566788999999


Q ss_pred             EEccCCCCCHh-HHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC
Q 006752          145 LWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG  223 (632)
Q Consensus       145 L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  223 (632)
                      +.+..|++... +|..+..+..|+.|||++|++.. .|..+...+++-.|+|++|+|..+....+.+++-          
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD----------  151 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD----------  151 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHh----------
Confidence            99999977543 45667789999999999999986 6788888899999999999998655555555544          


Q ss_pred             CCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch---hhhhcC
Q 006752          224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQM  300 (632)
Q Consensus       224 l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~  300 (632)
                               |-.|+|++|++..+|+.+..+..|++|.+++|.+....-. ....+.+|+.|.+++.+-+-.   ..+..+
T Consensus       152 ---------LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l  221 (1255)
T KOG0444|consen  152 ---------LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDL  221 (1255)
T ss_pred             ---------HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccccchhhcCCCchhhh
Confidence                     4455555566666666666666677777777665432111 122345566677777654433   567788


Q ss_pred             CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  380 (632)
                      .+|..+|+|.|.+. ..|+.+..+ ++|+.|++++|+++......  +...+|++|++|.|+++ ..|.+++.++.|+.|
T Consensus       222 ~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhccccccCCC-cchHHHhhh-hhhheeccCcCceeeeeccH--HHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence            89999999999987 678888888 99999999999998754433  45678999999999998 578889999999999


Q ss_pred             EccCCccccc-cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCc
Q 006752          381 DISNTDIKGM-YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ  459 (632)
Q Consensus       381 ~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~  459 (632)
                      .+.+|+++-. +|+.                                                   ++.+.+|+++..++
T Consensus       297 y~n~NkL~FeGiPSG---------------------------------------------------IGKL~~Levf~aan  325 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSG---------------------------------------------------IGKLIQLEVFHAAN  325 (1255)
T ss_pred             HhccCcccccCCccc---------------------------------------------------hhhhhhhHHHHhhc
Confidence            9999987522 3553                                                   45566777777777


Q ss_pred             cCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          460 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       460 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      |.+.- .|+.++.|..|+.|.|+.|++.. .|+++.-++-|+.||+..|.-.
T Consensus       326 N~LEl-VPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  326 NKLEL-VPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ccccc-CchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence            77765 67777777778888888877766 6777777777888888777543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=7.1e-32  Score=255.97  Aligned_cols=458  Identities=20%  Similarity=0.201  Sum_probs=347.8

Q ss_pred             HHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCch
Q 006752           27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS  106 (632)
Q Consensus        27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~  106 (632)
                      ...+.+.+..+|..+.+-....-.     -..++.  ...++.+++++|..  ....+.+.++..|.+|++.+|+ +.. 
T Consensus        14 lnlsnr~l~~vp~~vyq~~~t~~e-----~e~wW~--qv~l~~lils~N~l--~~l~~dl~nL~~l~vl~~~~n~-l~~-   82 (565)
T KOG0472|consen   14 LNLSNRSLKDVPTEVYQINLTTGE-----GENWWE--QVDLQKLILSHNDL--EVLREDLKNLACLTVLNVHDNK-LSQ-   82 (565)
T ss_pred             cccccchhhhccHHHHHHHhhccc-----hhhhhh--hcchhhhhhccCch--hhccHhhhcccceeEEEeccch-hhh-
Confidence            344567778888877763311100     111122  35689999999842  2344567789999999999998 553 


Q ss_pred             hHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccC
Q 006752          107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV  186 (632)
Q Consensus       107 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~  186 (632)
                      .+.+++.+..++.|+.++| .+. ..++.++.+.+|..+++++|.+.. .++.++.+..|+.++..+|+++. .|.++..
T Consensus        83 lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~  158 (565)
T KOG0472|consen   83 LPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDMVN  158 (565)
T ss_pred             CCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHHHH
Confidence            5668889999999999998 444 456778899999999999999875 56678888899999999999986 5778888


Q ss_pred             CCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCcccchhccccCCCCCcEEEee
Q 006752          187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLA  262 (632)
Q Consensus       187 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~  262 (632)
                      +.+|..+++.+|+++...|..+. ++.|++|+...|.+..+|    .+.+|..|++..|++..+| .+.+|+.|.+++++
T Consensus       159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVG  236 (565)
T ss_pred             HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhc
Confidence            99999999999999987777666 899999999999888766    6788889999999999998 78899999999999


Q ss_pred             CCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA  341 (632)
Q Consensus       263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  341 (632)
                      .|.+...|.. ....++++..||+..|++... ..+..+.+|++||+++|.+++ .|..+..+  .|+.|.+.+|.+...
T Consensus       237 ~N~i~~lpae-~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  237 ENQIEMLPAE-HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLRTI  312 (565)
T ss_pred             ccHHHhhHHH-HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchHHH
Confidence            9998877765 345789999999999999988 677778899999999999985 44555554  788999999976542


Q ss_pred             hHHHH-----------Hh-----------------------------cCCCCcEEEccCCCCChHHHHHHhcC--CCccE
Q 006752          342 GVGIL-----------AG-----------------------------HLPNLEILSLSGTQIDDYAISYMSMM--PSLKF  379 (632)
Q Consensus       342 ~~~~~-----------~~-----------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~--~~L~~  379 (632)
                      --+.+           ..                             ...+.+.|++++-+++..+.+.|...  .-...
T Consensus       313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence            21111           00                             11245556666655554444444322  23566


Q ss_pred             EEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccch-HHhhcCCcccccccC
Q 006752          380 IDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL-TALQNLNHLERLNLE  458 (632)
Q Consensus       380 L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~l~~l~~L~~L~Ls  458 (632)
                      ++++.|++... |..+..                            ...-.+.+.++.|.+..+ ..++.+++|..|+|+
T Consensus       393 VnfskNqL~el-Pk~L~~----------------------------lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~  443 (565)
T KOG0472|consen  393 VNFSKNQLCEL-PKRLVE----------------------------LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS  443 (565)
T ss_pred             EecccchHhhh-hhhhHH----------------------------HHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence            66666666553 443211                            123345566666666443 357889999999999


Q ss_pred             ccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752          459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      +|-+.+ +|..++.+..|+.||++.|+|.. .|..+..+..|+.+-.++|++....++.+.++..|.+||+.+|.+..
T Consensus       444 NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~  519 (565)
T KOG0472|consen  444 NNLLND-LPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ  519 (565)
T ss_pred             cchhhh-cchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence            998888 78888899999999999999987 78888778888888888899999888889999999999999998744

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-29  Score=261.41  Aligned_cols=439  Identities=20%  Similarity=0.213  Sum_probs=324.4

Q ss_pred             ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEE
Q 006752           67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW  146 (632)
Q Consensus        67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~  146 (632)
                      ++.|+++.|-.++.. .++..+.-+|++|++++|+ +.. .+..+..+++|+.|+++.| .+... +....++.+|+++.
T Consensus        23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~-~~~-fp~~it~l~~L~~ln~s~n-~i~~v-p~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQ-ISS-FPIQITLLSHLRQLNLSRN-YIRSV-PSSCSNMRNLQYLN   97 (1081)
T ss_pred             HHhhhccccccccCc-hHHhhheeeeEEeeccccc-ccc-CCchhhhHHHHhhcccchh-hHhhC-chhhhhhhcchhhe
Confidence            888888888555533 4555556569999999988 554 4556788889999999988 44433 45667889999999


Q ss_pred             ccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC
Q 006752          147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK  226 (632)
Q Consensus       147 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  226 (632)
                      |.+|.+. ..|..+..+++|+.|++++|.+.. +|..+..+..++.+..++|.-..    .++... ++.+++..|.+..
T Consensus        98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGG  170 (1081)
T ss_pred             eccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhccc
Confidence            9988776 467788889999999999998865 56777788888888888882111    122222 6666666665543


Q ss_pred             -----CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCC
Q 006752          227 -----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK  301 (632)
Q Consensus       227 -----l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~  301 (632)
                           +..+..  .|+|++|.+.  ...+..+.+|+.+....|++.....     ..++++.|+.++|.++....-....
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~~p~p~  241 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDVHPVPL  241 (1081)
T ss_pred             chhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeeccccccc
Confidence                 333333  5999999887  3445678888888888888776432     3578999999999998664444557


Q ss_pred             CCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEE
Q 006752          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  381 (632)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  381 (632)
                      +|++++++.|++.+ .|.++..+ .+|+.++..+|+++......  ....+|+.|++.+|++.. +|......+.|++|+
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~-~nle~l~~n~N~l~~lp~ri--~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGAC-ANLEALNANHNRLVALPLRI--SRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhc-ccceEecccchhHHhhHHHH--hhhhhHHHHHhhhhhhhh-CCCcccccceeeeee
Confidence            89999999999986 44777776 99999999999996544433  347899999999998874 444466789999999


Q ss_pred             ccCCccccccCCCccchhhhhhhhhhhhhceeccccccccc--cccccchhhhccccccccc--chHHhhcCCccccccc
Q 006752          382 ISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFP--SSVLAGFIQQVGAETDLVL--SLTALQNLNHLERLNL  457 (632)
Q Consensus       382 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~l~--~~~~l~~l~~L~~L~L  457 (632)
                      |..|++....+..+......+..+....+      ..-.+|  .......++.|.+.+|.+.  -++.+.+.++|++|+|
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n------~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSN------KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhc------cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            99999987633222111111222222111      111122  1123456788888888884  3468899999999999


Q ss_pred             CccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752          458 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE  537 (632)
Q Consensus       458 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~  537 (632)
                      ++|++.......+.+++.|+.|+||+|+++. +|..+..++.|++|...+|++... | .+..++.|+.+|+|.|.+...
T Consensus       391 syNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  391 SYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             cccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhh
Confidence            9999998777778899999999999999998 679999999999999999999985 5 788899999999999998443


Q ss_pred             HHH
Q 006752          538 DAI  540 (632)
Q Consensus       538 ~~~  540 (632)
                      ..+
T Consensus       468 ~l~  470 (1081)
T KOG0618|consen  468 TLP  470 (1081)
T ss_pred             hhh
Confidence            333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-26  Score=219.65  Aligned_cols=433  Identities=18%  Similarity=0.122  Sum_probs=264.0

Q ss_pred             HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (632)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~  104 (632)
                      -.++|+.+++..+|.++|+                      ..+.++|..| .++...+.+|+.+++||.|+|++|. |+
T Consensus        49 ~~VdCr~~GL~eVP~~LP~----------------------~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~-Is  104 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPP----------------------ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNN-IS  104 (498)
T ss_pred             ceEEccCCCcccCcccCCC----------------------cceEEEeccC-CcccCChhhccchhhhceecccccc-hh
Confidence            4578899999999999887                      6888999998 6887788999999999999999999 99


Q ss_pred             chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhc
Q 006752          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL  184 (632)
Q Consensus       105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l  184 (632)
                      .+.+++|.+++.|.+|-+.++..+++..-..|+++..|+.|.+.-|++.....+.|..+++|..|.+..|.+....-..|
T Consensus       105 ~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf  184 (498)
T KOG4237|consen  105 FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF  184 (498)
T ss_pred             hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence            99999999999999998888558999888899999999999999999998888899999999999999988876544467


Q ss_pred             cCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEE---Ee
Q 006752          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI---SL  261 (632)
Q Consensus       185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L---~l  261 (632)
                      ..+..++.+.+..|.+-.     ..+++.+.... ..+.+ .++...-.....+.+.++..+...-+.+. ++.+   ..
T Consensus       185 ~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~  256 (498)
T KOG4237|consen  185 QGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLS  256 (498)
T ss_pred             cchhccchHhhhcCcccc-----ccccchhhhHH-hhchh-hcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhc
Confidence            777788888777765321     12222221110 00000 01111111111222222222222111111 1111   01


Q ss_pred             eCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752          262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA  341 (632)
Q Consensus       262 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  341 (632)
                      +.+....+.+.                      ..|..+++|+.|++++|++++....+|.+. ..+++|.+..|++...
T Consensus       257 ~~d~~d~~cP~----------------------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v  313 (498)
T KOG4237|consen  257 SEDFPDSICPA----------------------KCFKKLPNLRKLNLSNNKITRIEDGAFEGA-AELQELYLTRNKLEFV  313 (498)
T ss_pred             cccCcCCcChH----------------------HHHhhcccceEeccCCCccchhhhhhhcch-hhhhhhhcCcchHHHH
Confidence            11111112222                      346666777777777777776666666666 6777777777776655


Q ss_pred             hHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccc
Q 006752          342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF  421 (632)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (632)
                      ....| .++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+.-.---.+  +-..+..           .+.+..
T Consensus       314 ~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w--l~~Wlr~-----------~~~~~~  379 (498)
T KOG4237|consen  314 SSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW--LGEWLRK-----------KSVVGN  379 (498)
T ss_pred             HHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH--HHHHHhh-----------CCCCCC
Confidence            44444 556777777777777777777777777777777776665532211000  0000000           011122


Q ss_pred             ccccccchhhhcccccccccch--------------HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          422 PSSVLAGFIQQVGAETDLVLSL--------------TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       422 ~~~~~~~~l~~l~~~~~~l~~~--------------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                      |...-.+.+..+.++...+...              ..-..|+-+.+.-=-.|......|..+  ...-..|++.+|.++
T Consensus       380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~  457 (498)
T KOG4237|consen  380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAIT  457 (498)
T ss_pred             CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhc
Confidence            3333333333333332222110              011122223222222222222234332  234577888888888


Q ss_pred             CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752          488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  532 (632)
Q Consensus       488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N  532 (632)
                      .+..+   .+.+| .+|+++|+++...-..|.++..|.+|-++.|
T Consensus       458 ~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  458 SVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            74433   55667 8888888888887888888888888888775

>PLN03210 Resistant to P

Probab=99.86  E-value=3.5e-21  Score=224.35  Aligned_cols=153  Identities=22%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             HHhccCCCccEEEcCCCC-----CCCchhHHhhhCC-CCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHH
Q 006752           84 AYLGAFRYLRSLNVADCR-----RVTSSALWALTGM-TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGI  157 (632)
Q Consensus        84 ~~~~~~~~L~~L~L~~~~-----~i~~~~~~~l~~l-~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  157 (632)
                      ..|.++++|+.|.+.++.     .+....+..|..+ ++|+.|++.++ .+... +..+ ...+|++|++.++.+.. .+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCM-PSNF-RPENLVKLQMQGSKLEK-LW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCC-CCcC-CccCCcEEECcCccccc-cc
Confidence            345555666666554332     0111122223333 24555555554 22221 2222 34555555555555543 23


Q ss_pred             HHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC-CCCCCC---CCCCC
Q 006752          158 ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTKLP---NISSL  233 (632)
Q Consensus       158 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~l~---~l~~L  233 (632)
                      ..+..+++|+.|+++++.....+| .++.+++|++|++++|......|..+..+++|+.|++++| .+..+|   ++++|
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL  706 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL  706 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence            334455555555555544222233 2445555555555555444444555555555555555543 233332   23444


Q ss_pred             CEEECCCC
Q 006752          234 ECLNLSNC  241 (632)
Q Consensus       234 ~~L~L~~~  241 (632)
                      +.|++++|
T Consensus       707 ~~L~Lsgc  714 (1153)
T PLN03210        707 YRLNLSGC  714 (1153)
T ss_pred             CEEeCCCC
Confidence            44444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=1.5e-20  Score=219.04  Aligned_cols=333  Identities=17%  Similarity=0.136  Sum_probs=204.6

Q ss_pred             HhhhcCCCCccEEEccCCCC------CHhHHHHhcCCC-CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhh
Q 006752          133 MKHLLSISTLEKLWLSETGL------TADGIALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA  205 (632)
Q Consensus       133 ~~~l~~l~~L~~L~L~~n~i------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  205 (632)
                      ..+|.++++|+.|.+..+..      ....|..|..++ +|+.|.+.++.+.. .|..+ ...+|++|++.++++.. .+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~~-L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLEK-LW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCccccc-cc
Confidence            34566677777777754422      112333444443 57777777766644 34444 35677777777777653 34


Q ss_pred             HhhcCCCCCcEEEccCCC-CCC---CCCCCCCCEEECCCCc-ccchhccccCCCCCcEEEeeCCC-CCchhhhhhhhcCC
Q 006752          206 AVLKMFPRLSFLNLAWTG-VTK---LPNISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTT-FINEREAFLYIETS  279 (632)
Q Consensus       206 ~~l~~l~~L~~L~l~~n~-l~~---l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~  279 (632)
                      ..+..+++|+.|+++++. +..   +..+++|++|++++|. +..+|..+..+++|+.|++++|. +..+|...   .++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCC
Confidence            455667777777777653 333   3356777777777764 44677777777777778777764 33444322   567


Q ss_pred             CccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch------hHHHHHhcCCC
Q 006752          280 LLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA------GVGILAGHLPN  352 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~~~~  352 (632)
                      +|+.|++++|..... +.  ...+|++|++++|.+.. .|..+ .+ ++|++|.+.++.....      .+......+++
T Consensus       705 sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~-lP~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEE-FPSNL-RL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccc-ccccc-cc-cccccccccccchhhccccccccchhhhhcccc
Confidence            777777777753222 22  23567778887777653 33332 22 6777777766431110      01111133568


Q ss_pred             CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ  432 (632)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (632)
                      |+.|++++|...+.+|..++++++|+.|++++|...+.+|..+                                     
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------  822 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------  822 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence            8888888887666777788888888888888876555556521                                     


Q ss_pred             cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCc-eec
Q 006752          433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA-VLT  511 (632)
Q Consensus       433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N-~l~  511 (632)
                                     ++++|+.|++++|......|..   .++|+.|+|++|.++. +|.++..+++|++|++++| ++.
T Consensus       823 ---------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        823 ---------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             ---------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcC
Confidence                           3567777777776443333332   3567777777777775 5667777777777777774 344


Q ss_pred             cCCCCCCCCCCCcceEecCCCc
Q 006752          512 NSGLGSFKPPRSLKLLDLHGGW  533 (632)
Q Consensus       512 ~~~~~~l~~~~~L~~L~l~~N~  533 (632)
                      . +|..+..+++|+.+++++|.
T Consensus       884 ~-l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        884 R-VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c-cCcccccccCCCeeecCCCc
Confidence            3 45556666777777777775

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=4.2e-23  Score=196.38  Aligned_cols=106  Identities=24%  Similarity=0.242  Sum_probs=101.2

Q ss_pred             HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCC
Q 006752          444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS  523 (632)
Q Consensus       444 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~  523 (632)
                      ..|.++++|++|+|++|+++++.+.+|.+...++.|.|..|+|..+...+|.++..|+.|+|.+|+|+...|.+|....+
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            47999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             cceEecCCCcccChHHHHHHHHHcCC
Q 006752          524 LKLLDLHGGWLLTEDAILQFCKMHPR  549 (632)
Q Consensus       524 L~~L~l~~N~l~~~~~~~~~~~~~~~  549 (632)
                      |.+|.+-.|+|.|.|.+.|+..|+..
T Consensus       348 l~~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             eeeeehccCcccCccchHHHHHHHhh
Confidence            99999999999999999999888753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1.2e-20  Score=204.16  Aligned_cols=193  Identities=18%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             CCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCC-CCCCCEEECCCCccc
Q 006752          166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTID  244 (632)
Q Consensus       166 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-l~~L~~L~L~~~~l~  244 (632)
                      -..|+++.+.++. +|..+.  ++|+.|++.+|+++.. |.   ..++|++|++++|.++.+|. .++|+.|++++|.+.
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~  275 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT  275 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCcccccceeeccCCchh
Confidence            4445555555542 333332  2455555555555432 21   13455555555555554442 244555555555555


Q ss_pred             chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhc
Q 006752          245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV  324 (632)
Q Consensus       245 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  324 (632)
                      .+|..   .++|+.|++++|+++.+|..     .++|+.|++++|.++.++.+  ..+|+.|++++|.+++ +|.    .
T Consensus       276 ~Lp~l---p~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~-LP~----l  340 (788)
T PRK15387        276 HLPAL---PSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTS-LPT----L  340 (788)
T ss_pred             hhhhc---hhhcCEEECcCCcccccccc-----ccccceeECCCCccccCCCC--cccccccccccCcccc-ccc----c
Confidence            44432   13455555555555544321     24455555555555444221  1234555555555543 121    1


Q ss_pred             CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      ..+|+.|++++|+++....     ..++|+.|++++|++++ +|.   ...+|+.|++++|++++
T Consensus       341 p~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        341 PSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS  396 (788)
T ss_pred             ccccceEecCCCccCCCCC-----CCcccceehhhcccccc-Ccc---cccccceEEecCCcccC
Confidence            1345555555555543211     12345555555555543 221   12345555555555553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=9.2e-21  Score=204.93  Aligned_cols=266  Identities=20%  Similarity=0.208  Sum_probs=207.7

Q ss_pred             CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (632)
Q Consensus       140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  219 (632)
                      ..-..|+++++.++. +|..+.  ++|+.|++.+|.++. +|.   ..++|++|++++|+++.. |.   ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            456788999998885 455443  478999999998876 332   357899999999998854 32   2468899999


Q ss_pred             cCCCCCCCCCC-CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhh
Q 006752          220 AWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT  298 (632)
Q Consensus       220 ~~n~l~~l~~l-~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~  298 (632)
                      ++|.++.++.. .+|+.|++++|+++.+|..   .++|+.|++++|.+.+++..     ...|+.|++++|.++.++.+.
T Consensus       270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-----p~~L~~L~Ls~N~L~~LP~lp  341 (788)
T PRK15387        270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPTLP  341 (788)
T ss_pred             cCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----cccccccccccCccccccccc
Confidence            99998887753 5789999999999988763   46899999999999887642     256888999999998775432


Q ss_pred             cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (632)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  378 (632)
                        .+|++|++++|++++. |.    ...+|+.|++++|+++.. +.    ..++|+.|++++|++++. |.   ..++|+
T Consensus       342 --~~Lq~LdLS~N~Ls~L-P~----lp~~L~~L~Ls~N~L~~L-P~----l~~~L~~LdLs~N~Lt~L-P~---l~s~L~  405 (788)
T PRK15387        342 --SGLQELSVSDNQLASL-PT----LPSELYKLWAYNNRLTSL-PA----LPSGLKELIVSGNRLTSL-PV---LPSELK  405 (788)
T ss_pred             --cccceEecCCCccCCC-CC----CCcccceehhhccccccC-cc----cccccceEEecCCcccCC-CC---cccCCC
Confidence              5899999999999853 32    126899999999998863 32    246899999999999853 32   246899


Q ss_pred             EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752          379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE  458 (632)
Q Consensus       379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls  458 (632)
                      .|++++|.+++ +|..                                                      ..+|+.|+++
T Consensus       406 ~LdLS~N~Lss-IP~l------------------------------------------------------~~~L~~L~Ls  430 (788)
T PRK15387        406 ELMVSGNRLTS-LPML------------------------------------------------------PSGLLSLSVY  430 (788)
T ss_pred             EEEccCCcCCC-CCcc------------------------------------------------------hhhhhhhhhc
Confidence            99999999986 3541                                                      1367889999


Q ss_pred             ccCCCCCccccccCcccccccccccccCCCcchhhhcc
Q 006752          459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  496 (632)
Q Consensus       459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  496 (632)
                      +|+++. +|..+..+++|+.|+|++|++++..+..+..
T Consensus       431 ~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        431 RNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            999986 7888999999999999999999988877643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=8.7e-19  Score=177.81  Aligned_cols=278  Identities=21%  Similarity=0.210  Sum_probs=176.0

Q ss_pred             EEEcCCCCCCC-chhHHhhhCCCCcCEEeccCCCCCChhhHh----hhcCCCCccEEEccCCCCC------HhHHHHhcC
Q 006752           94 SLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMK----HLLSISTLEKLWLSETGLT------ADGIALLSS  162 (632)
Q Consensus        94 ~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~----~l~~l~~L~~L~L~~n~i~------~~~~~~~~~  162 (632)
                      .|+|..+. ++ ......+..++.|++|++++| .+++....    .+...++|++++++++.+.      ...+..+..
T Consensus         2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCc-ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            46676666 55 334445567778999999988 56554333    3346677888888888776      223456667


Q ss_pred             CCCCCEEEcCCCCCChHHHHhccCCCC---ccEEEecCCCCCchhh----HhhcCC-CCCcEEEccCCCCCCCCCCCCCC
Q 006752          163 LQNLSVLDLGGLPVTDLVLRSLQVLTK---LEYLDLWGSQVSNRGA----AVLKMF-PRLSFLNLAWTGVTKLPNISSLE  234 (632)
Q Consensus       163 l~~L~~L~L~~n~i~~~~~~~l~~l~~---L~~L~L~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~l~~l~~l~~L~  234 (632)
                      +++|+.|++++|.+.+..+..+..+.+   |++|++++|.+++...    ..+..+ ++|+.|++++|.++.-.      
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~------  153 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS------  153 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH------
Confidence            788888888888877555555544444   8888888887764322    233334 44444444444433100      


Q ss_pred             EEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhh---hhhhcCCCccEEeccCCCCCch------hhhhcCCCCCe
Q 006752          235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEH  305 (632)
Q Consensus       235 ~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~  305 (632)
                              ...++..+..+++|++|++++|.+.+....   ..+..+++|++|++++|.+.+.      ..+..+++|++
T Consensus       154 --------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~  225 (319)
T cd00116         154 --------CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV  225 (319)
T ss_pred             --------HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence                    002333444556677777777766642111   1123446777777777777543      34566788999


Q ss_pred             eeccCCCCCchHHHHHHhcC----CCCcEEEccCCcCcchhHHHH---HhcCCCCcEEEccCCCCChHHHHHHh----cC
Q 006752          306 LDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGIL---AGHLPNLEILSLSGTQIDDYAISYMS----MM  374 (632)
Q Consensus       306 L~l~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~----~~  374 (632)
                      |++++|.+++..+..+...+    +.|++|++++|.+++.....+   ...+++|+++++++|.+++.....++    ..
T Consensus       226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~  305 (319)
T cd00116         226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP  305 (319)
T ss_pred             EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence            99999988876665555432    689999999998875443322   24457899999999999876444333    33


Q ss_pred             -CCccEEEccCCcc
Q 006752          375 -PSLKFIDISNTDI  387 (632)
Q Consensus       375 -~~L~~L~Ls~n~i  387 (632)
                       +.|+++++.+|.+
T Consensus       306 ~~~~~~~~~~~~~~  319 (319)
T cd00116         306 GNELESLWVKDDSF  319 (319)
T ss_pred             CCchhhcccCCCCC
Confidence             6888998888753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=2.9e-18  Score=174.02  Aligned_cols=278  Identities=26%  Similarity=0.279  Sum_probs=165.5

Q ss_pred             EEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHH----hhhCCCCcCEEeccCCCCCC------hhhHhhhcC
Q 006752           69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVT------DAGMKHLLS  138 (632)
Q Consensus        69 ~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~----~l~~l~~L~~L~L~~~~~l~------~~~~~~l~~  138 (632)
                      .|+|+.+...+..+...+..+++|++|++++|. +++....    .+...+.|++|+++++ .+.      ...+..+..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHh
Confidence            466766654446667777777888888888887 6544332    3446677888888887 344      122345567


Q ss_pred             CCCccEEEccCCCCCHhHHHHhcCCCC---CCEEEcCCCCCChH----HHHhccCC-CCccEEEecCCCCCchh----hH
Q 006752          139 ISTLEKLWLSETGLTADGIALLSSLQN---LSVLDLGGLPVTDL----VLRSLQVL-TKLEYLDLWGSQVSNRG----AA  206 (632)
Q Consensus       139 l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~L~~n~i~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~----~~  206 (632)
                      +++|++|++++|.+....+..+..+.+   |++|++++|++.+.    +...+..+ ++|+.|++++|.+++..    +.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            788888888888887655555544444   88888888888742    23345566 88888888888887433    33


Q ss_pred             hhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhh---hhhhcCCCccE
Q 006752          207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSF  283 (632)
Q Consensus       207 ~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~  283 (632)
                      .+..+++|++|++++|.+++-              .+..++..+..+++|+.|++++|.+.+....   ..+..+++|++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~--------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~  225 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDA--------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV  225 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchH--------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence            445556666666666654420              0001222222334555555555544432211   12234556666


Q ss_pred             EeccCCCCCch--hhh-h----cCCCCCeeeccCCCCCchHHHHH----HhcCCCCcEEEccCCcCcchhHHHHH---hc
Q 006752          284 LDVSNSSLSRF--CFL-T----QMKALEHLDLSSSMIGDDSVEMV----ACVGANLRNLNLSNTRFSSAGVGILA---GH  349 (632)
Q Consensus       284 L~ls~n~l~~~--~~l-~----~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~---~~  349 (632)
                      |++++|.+++.  ..+ .    ..+.|++|++++|.+++.....+    ... ++|+++++++|.+++.....+.   ..
T Consensus       226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~~~~~~  304 (319)
T cd00116         226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLAESLLE  304 (319)
T ss_pred             EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHHHHHhh
Confidence            66666666542  111 1    23678888888888775443333    223 6788888888888765333222   22


Q ss_pred             C-CCCcEEEccCCCC
Q 006752          350 L-PNLEILSLSGTQI  363 (632)
Q Consensus       350 ~-~~L~~L~L~~n~l  363 (632)
                      . +.|+++++.+|.+
T Consensus       305 ~~~~~~~~~~~~~~~  319 (319)
T cd00116         305 PGNELESLWVKDDSF  319 (319)
T ss_pred             cCCchhhcccCCCCC
Confidence            3 5788888877753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=7.3e-18  Score=183.85  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=39.0

Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCC----CCCCCcc
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF----KPPRSLK  525 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l----~~~~~L~  525 (632)
                      ++|+.|++++|+++. +|..+  .++|+.|+|++|+++.+ |..+.  .+|+.|++++|++++. |..+    ...+.+.
T Consensus       346 ~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~  418 (754)
T PRK15370        346 PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPT  418 (754)
T ss_pred             CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCcc
Confidence            355555565555553 33332  24555566666655543 22222  2455566666655532 3222    2235556


Q ss_pred             eEecCCCcc
Q 006752          526 LLDLHGGWL  534 (632)
Q Consensus       526 ~L~l~~N~l  534 (632)
                      .+++.+|++
T Consensus       419 ~L~L~~Npl  427 (754)
T PRK15370        419 RIIVEYNPF  427 (754)
T ss_pred             EEEeeCCCc
Confidence            666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=3.3e-17  Score=178.72  Aligned_cols=202  Identities=19%  Similarity=0.244  Sum_probs=119.6

Q ss_pred             CCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCC--CCCCCEEECCCC
Q 006752          164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNC  241 (632)
Q Consensus       164 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--l~~L~~L~L~~~  241 (632)
                      .+...|+++++.++. +|..+.  +.|+.|++++|+++.. |..+.  ++|+.|++++|.++.++.  ...|+.|++++|
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence            456788888877765 344342  4688888888887753 33332  477888888877777662  246777777777


Q ss_pred             cccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHH
Q 006752          242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV  321 (632)
Q Consensus       242 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  321 (632)
                      .+..+|..+.  ++|+.|++++|++..+|..+    .++|+.|++++|.++.++.. ..++|+.|++++|.++.. |..+
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~L-P~~l  323 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCLPENL----PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTAL-PETL  323 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCcccccc----CCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccC-Cccc
Confidence            7777666543  46777777777776655432    24667777777766654211 113566666666666532 2211


Q ss_pred             HhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       322 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                         .++|+.|++++|.++.. +..+   +++|+.|++++|+++. +|..+  .++|+.|++++|+++.
T Consensus       324 ---~~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        324 ---PPGLKTLEAGENALTSL-PASL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN  381 (754)
T ss_pred             ---cccceeccccCCccccC-Chhh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence               14566666666666542 2222   3466666666666553 23322  2456666666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=8.7e-16  Score=130.17  Aligned_cols=183  Identities=21%  Similarity=0.268  Sum_probs=140.0

Q ss_pred             hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcC
Q 006752          295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  374 (632)
Q Consensus       295 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  374 (632)
                      +.+-.+.+.+.|.+++|+++. .|..++.+ .+|+.|++++|++.......  +.+++|+.|+++-|++. ..|..|+.+
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l-~nlevln~~nnqie~lp~~i--ssl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTV-VPPNIAEL-KNLEVLNLSNNQIEELPTSI--SSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             ccccchhhhhhhhcccCceee-cCCcHHHh-hhhhhhhcccchhhhcChhh--hhchhhhheecchhhhh-cCccccCCC
Confidence            344455677778888888874 44556666 78888888888887654433  56888889988888875 567788899


Q ss_pred             CCccEEEccCCccccc-cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc
Q 006752          375 PSLKFIDISNTDIKGM-YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE  453 (632)
Q Consensus       375 ~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~  453 (632)
                      +.|+.||+.+|++... .|.                                                   .|-.+..|+
T Consensus       102 p~levldltynnl~e~~lpg---------------------------------------------------nff~m~tlr  130 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPG---------------------------------------------------NFFYMTTLR  130 (264)
T ss_pred             chhhhhhccccccccccCCc---------------------------------------------------chhHHHHHH
Confidence            9999999999888654 233                                                   345567899


Q ss_pred             ccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC---CCcceEecC
Q 006752          454 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---RSLKLLDLH  530 (632)
Q Consensus       454 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~---~~L~~L~l~  530 (632)
                      .|+|++|.+.- +|..++++++|+.|.+..|.+.. .|..++.++.|++|.+.+|+++-. |..++.+   .+=+.+.+.
T Consensus       131 alyl~dndfe~-lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vl-ppel~~l~l~~~k~v~r~E  207 (264)
T KOG0617|consen  131 ALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVL-PPELANLDLVGNKQVMRME  207 (264)
T ss_pred             HHHhcCCCccc-CChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeec-ChhhhhhhhhhhHHHHhhh
Confidence            99999999887 67888999999999999999887 788999999999999999999876 5555544   233456667


Q ss_pred             CCcccC
Q 006752          531 GGWLLT  536 (632)
Q Consensus       531 ~N~l~~  536 (632)
                      +|+++.
T Consensus       208 ~NPwv~  213 (264)
T KOG0617|consen  208 ENPWVN  213 (264)
T ss_pred             hCCCCC
Confidence            777744

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.45  E-value=7.5e-14  Score=134.96  Aligned_cols=324  Identities=22%  Similarity=0.262  Sum_probs=186.3

Q ss_pred             hhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHH-HHhccCCCccEEEcCCCCCCCchhH
Q 006752           30 QRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWM-AYLGAFRYLRSLNVADCRRVTSSAL  108 (632)
Q Consensus        30 ~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~i~~~~~  108 (632)
                      ++..+...+.+++..++..+...-          ...++.|.++|+..+..... .....|+++++|++.+|..+++...
T Consensus       113 q~idL~t~~rDv~g~VV~~~~~Rc----------gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~  182 (483)
T KOG4341|consen  113 QHIDLFTFQRDVDGGVVENMISRC----------GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL  182 (483)
T ss_pred             eeeehhcchhcCCCcceehHhhhh----------ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH
Confidence            445566666665554444332221          13588899999876655443 3446889999999999988888888


Q ss_pred             Hhhh-CCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEccCC-CCCHhHHH-HhcCCCCCCEEEcCCCCCChH-HHHh
Q 006752          109 WALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIA-LLSSLQNLSVLDLGGLPVTDL-VLRS  183 (632)
Q Consensus       109 ~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~  183 (632)
                      ..++ .|++|++|++..|..+++...+.++ +|++|++++++.| .+++.... .+.+++.++.+.+.||.-.+. ....
T Consensus       183 ~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~  262 (483)
T KOG4341|consen  183 LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK  262 (483)
T ss_pred             HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence            8887 7899999999998888888887666 7899999999988 45543332 345677777777776642221 1111


Q ss_pred             c-cCCCCccEEEecCC-CCCchhhHhh-cCCCCCcEEEccCCC-CCCCCCCCCCCEEECCCCcccchhccc-cCCCCCcE
Q 006752          184 L-QVLTKLEYLDLWGS-QVSNRGAAVL-KMFPRLSFLNLAWTG-VTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAK  258 (632)
Q Consensus       184 l-~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~-l~~l~~l~~L~~L~L~~~~l~~~~~~~-~~~~~L~~  258 (632)
                      . +.+..+..+++.+| .+++.....+ ..+..|+.+..+++. +++                  .....+ .++++|+.
T Consensus       263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d------------------~~l~aLg~~~~~L~~  324 (483)
T KOG4341|consen  263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD------------------EVLWALGQHCHNLQV  324 (483)
T ss_pred             HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch------------------HHHHHHhcCCCceEE
Confidence            1 34555666666565 3444432222 234445555544431 111                  011111 14445555


Q ss_pred             EEeeCCC-CCchhhhhhhhcCCCccEEeccCCCCCch----hhhhcCCCCCeeeccCCC-CCchHHHHHHhc---CCCCc
Q 006752          259 ISLAGTT-FINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSM-IGDDSVEMVACV---GANLR  329 (632)
Q Consensus       259 L~l~~n~-~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~---~~~L~  329 (632)
                      +.+.+|+ +++........+++.|+.+++..+.....    ..-.+++.|+.+.++.|. +++.+...+...   ...++
T Consensus       325 l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~  404 (483)
T KOG4341|consen  325 LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE  404 (483)
T ss_pred             EeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence            5555443 22222222233455566666655544332    233456777777777664 444433333221   15677


Q ss_pred             EEEccCCcCcchhHHHHHhcCCCCcEEEccCCC-CChHHHHHHh-cCCCccEEE
Q 006752          330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFID  381 (632)
Q Consensus       330 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~~~L~~L~  381 (632)
                      .+.+++++......-.....|++|+.+++-+++ ++......+. ++++++..-
T Consensus       405 ~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  405 VLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             eeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            778888875554444444667888888887765 4444444443 667666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.41  E-value=1.6e-12  Score=123.25  Aligned_cols=247  Identities=23%  Similarity=0.241  Sum_probs=153.6

Q ss_pred             hhhcCCCCccEEEccCCCCCHhHH----HHhcCCCCCCEEEcCCCC---CChHHHHh-------ccCCCCccEEEecCCC
Q 006752          134 KHLLSISTLEKLWLSETGLTADGI----ALLSSLQNLSVLDLGGLP---VTDLVLRS-------LQVLTKLEYLDLWGSQ  199 (632)
Q Consensus       134 ~~l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---i~~~~~~~-------l~~l~~L~~L~L~~n~  199 (632)
                      +.+..+..+++++|++|.+...-.    ..+.+.++|+..++++-.   ....+|.+       +..+++|++++||+|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            344567788888888888876443    345566788888777522   22333433       3455677777777776


Q ss_pred             CCchhhHh----hcCCCCCcEEEccCCCCCCCCCC---CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhh-
Q 006752          200 VSNRGAAV----LKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE-  271 (632)
Q Consensus       200 l~~~~~~~----l~~l~~L~~L~l~~n~l~~l~~l---~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~-  271 (632)
                      +....+..    +.++..|++|.|.+|.+...+.-   ..|..|.        ....+...+.|+.+....|++.+.+. 
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHH
Confidence            65444433    34455555555555554431100   0000000        11223355677777777777755332 


Q ss_pred             --hhhhhcCCCccEEeccCCCCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhcC---CCCcEEEccCCcCcc
Q 006752          272 --AFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSS  340 (632)
Q Consensus       272 --~~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~  340 (632)
                        ...+...+.|+.+.++.|.+...      ..+..|++|+.||+.+|.++..+...++...   +.|++|++++|.+..
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence              22345567788888888777543      5677888888888888888765544443322   678888999988876


Q ss_pred             hhHHH----HHhcCCCCcEEEccCCCCChHHHHH----HhcCCCccEEEccCCccc
Q 006752          341 AGVGI----LAGHLPNLEILSLSGTQIDDYAISY----MSMMPSLKFIDISNTDIK  388 (632)
Q Consensus       341 ~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~~~L~~L~Ls~n~i~  388 (632)
                      .+...    +....|+|+.|.+.+|.++......    +...+.|..|+|++|++.
T Consensus       256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            55443    3345788999999999887544333    346788999999999884

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=9.6e-15  Score=123.90  Aligned_cols=153  Identities=24%  Similarity=0.346  Sum_probs=133.4

Q ss_pred             CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhh
Q 006752          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCF  405 (632)
Q Consensus       326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  405 (632)
                      ..++.|.+++|+++...|..  ..+.+|+.|++++|++++ .|..++.+++|+.|+++-|++.-. |.            
T Consensus        33 s~ITrLtLSHNKl~~vppni--a~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l-pr------------   96 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNI--AELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL-PR------------   96 (264)
T ss_pred             hhhhhhhcccCceeecCCcH--HHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC-cc------------
Confidence            67888999999999776654  568999999999999974 566799999999999999998754 66            


Q ss_pred             hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCC-CccccccCcccccccccccc
Q 006752          406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRNA  484 (632)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n  484 (632)
                                                             .|+.++.|++|||.+|++.. ..|..|..++.|+.|+|++|
T Consensus        97 ---------------------------------------gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn  137 (264)
T KOG0617|consen   97 ---------------------------------------GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN  137 (264)
T ss_pred             ---------------------------------------ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence                                                   36778899999999998875 46777888999999999999


Q ss_pred             cCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCccc
Q 006752          485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL  535 (632)
Q Consensus       485 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~  535 (632)
                      .+.- +|..++++++|+.|.++.|.+... |..++.+..|+.|.+.+|++.
T Consensus       138 dfe~-lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  138 DFEI-LPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             Cccc-CChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee
Confidence            9987 677899999999999999999875 889999999999999999983

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.39  E-value=2e-12  Score=122.54  Aligned_cols=256  Identities=20%  Similarity=0.185  Sum_probs=152.2

Q ss_pred             HHHHhccCCCccEEEcCCCCCCCchhHHhh----hCCCCcCEEeccCCCCCChh----hHhhhcCCCCccEEEccCCCCC
Q 006752           82 WMAYLGAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDA----GMKHLLSISTLEKLWLSETGLT  153 (632)
Q Consensus        82 ~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~~~l~~~----~~~~l~~l~~L~~L~L~~n~i~  153 (632)
                      +.+....+..++.++|++|. ++.....++    ...++|++.++++-  +++.    .+..+.                
T Consensus        22 v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~----------------   82 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALK----------------   82 (382)
T ss_pred             HHHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHH----------------
Confidence            34445566777777777776 655444443    34566666666652  2221    111110                


Q ss_pred             HhHHHHhcCCCCCCEEEcCCCCCChHHHHh----ccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCC
Q 006752          154 ADGIALLSSLQNLSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN  229 (632)
Q Consensus       154 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~  229 (632)
                       ....++..+++|++|+|+.|-+....+..    +.++..|++|.|.+|.+.......++.  .|.+|.    .....+.
T Consensus        83 -~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----~~kk~~~  155 (382)
T KOG1909|consen   83 -MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----VNKKAAS  155 (382)
T ss_pred             -HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----HHhccCC
Confidence             11123344556666666666554433332    345677777777777665433333221  011110    0011334


Q ss_pred             CCCCCEEECCCCccc-----chhccccCCCCCcEEEeeCCCCCch---hhhhhhhcCCCccEEeccCCCCCch------h
Q 006752          230 ISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINE---REAFLYIETSLLSFLDVSNSSLSRF------C  295 (632)
Q Consensus       230 l~~L~~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~------~  295 (632)
                      -+.|+.+...+|++.     .+...+..++.|+.+.+..|.+...   .....+..|+.|+.||+..|.++..      .
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            455666666666655     2334445667788888887776432   2234566788888888888888654      5


Q ss_pred             hhhcCCCCCeeeccCCCCCchHHHHHHh----cCCCCcEEEccCCcCcchhHHHH---HhcCCCCcEEEccCCCC
Q 006752          296 FLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAGVGIL---AGHLPNLEILSLSGTQI  363 (632)
Q Consensus       296 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l  363 (632)
                      .++.+++|+.+++++|.+...+...+..    ..++|+.+.+.+|.++......+   ....|.|..|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6777889999999999888766555443    34789999999998876443222   24478999999999998

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.5e-13  Score=132.10  Aligned_cols=212  Identities=23%  Similarity=0.268  Sum_probs=127.2

Q ss_pred             CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCC
Q 006752          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  327 (632)
Q Consensus       252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  327 (632)
                      +..+|+++.+.++.....+..-....|++++.|++++|-+...    .....+|+|+.|+++.|++............+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4445555555555544333222233556666666666655444    345567777777777776653332222223377


Q ss_pred             CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI  407 (632)
Q Consensus       328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  407 (632)
                      |+.|.++.|.++-.....+...+|+|+.|++..|.....-.....-+..|+.|||++|++... +..             
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~-------------  264 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQG-------------  264 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-ccc-------------
Confidence            888888888887766666667788888888888752222222233456777888888777654 210             


Q ss_pred             hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc------ccCccccccccc
Q 006752          408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP------LSTFKELIHLSL  481 (632)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~L  481 (632)
                                                          ...+.++.|+.|+++.+.+.......      ...+++|++|++
T Consensus       265 ------------------------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  265 ------------------------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             ------------------------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence                                                13456677777777777776543222      234677888888


Q ss_pred             ccccCCCcc-hhhhccCCCCcEEeecCceeccC
Q 006752          482 RNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       482 s~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      +.|+|.+.. -..+..+++|+.|.+..|.++..
T Consensus       309 ~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  309 SENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccCccccccccchhhccchhhhhhccccccccc
Confidence            888775522 12345566777777777776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=9.5e-13  Score=121.76  Aligned_cols=181  Identities=22%  Similarity=0.261  Sum_probs=128.9

Q ss_pred             HHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhh-cC
Q 006752           60 LEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL-LS  138 (632)
Q Consensus        60 ~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l-~~  138 (632)
                      +..|.+.+++||||............++.|.+|+.|.+.+.+ +.+.....+++-.+|+.|+|+.|.+++..+...+ .+
T Consensus       180 ~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s  258 (419)
T KOG2120|consen  180 FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS  258 (419)
T ss_pred             hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence            344556799999998743334566778999999999999998 8888888999999999999999998888776654 48


Q ss_pred             CCCccEEEccCCCCCHhHHHH-hc-CCCCCCEEEcCCCC--CCh-HHHHhccCCCCccEEEecCC-CCCchhhHhhcCCC
Q 006752          139 ISTLEKLWLSETGLTADGIAL-LS-SLQNLSVLDLGGLP--VTD-LVLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFP  212 (632)
Q Consensus       139 l~~L~~L~L~~n~i~~~~~~~-~~-~l~~L~~L~L~~n~--i~~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~  212 (632)
                      |+.|..|+|+.|.+....... .. --++|+.|+++|+.  +.. .+..-...+++|.+|||++| .++......|.+++
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            999999999999776544322 22 23578888998865  221 12222367889999999887 45655556677777


Q ss_pred             CCcEEEccCCCCC------CCCCCCCCCEEECCCC
Q 006752          213 RLSFLNLAWTGVT------KLPNISSLECLNLSNC  241 (632)
Q Consensus       213 ~L~~L~l~~n~l~------~l~~l~~L~~L~L~~~  241 (632)
                      .|++|.++.|..-      ++...+.|.+|++.++
T Consensus       339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            7777777665321      2334455555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.29  E-value=3.4e-12  Score=123.65  Aligned_cols=283  Identities=23%  Similarity=0.255  Sum_probs=184.3

Q ss_pred             hHHhhcCcccEEeccCCCCCCHHHHHHh-ccCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCCChhhHhhh
Q 006752           59 LLEVFKHNAEAIELRGENSVDAEWMAYL-GAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHL  136 (632)
Q Consensus        59 ~~~~~~~~l~~L~Ls~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l  136 (632)
                      .+...|+++++|++.+|..+++.....+ ..|++|++|++..|..+++.....++ +|++|++|+++.|+.+.+.+.+.+
T Consensus       158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            3445689999999999988887665555 47899999999999989999998777 899999999999998888777766


Q ss_pred             c-CCCCccEEEccCCC-CCHhHHH-HhcCCCCCCEEEcCCCC-CChHHHHhc-cCCCCccEEEecCC-CCCchhhHhh-c
Q 006752          137 L-SISTLEKLWLSETG-LTADGIA-LLSSLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGS-QVSNRGAAVL-K  209 (632)
Q Consensus       137 ~-~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-i~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~l-~  209 (632)
                      . ++..++.+.+.+|. ....... .=..+.-+..+++..|. +++.....+ ..+..|+.|+.+++ .+++..-.++ .
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~  317 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ  317 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence            6 78889999888873 2222211 12245566677766654 555543333 46889999999987 4555444444 3


Q ss_pred             CCCCCcEEEccCCC-CCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchh-hhhhhhcCCCccEEecc
Q 006752          210 MFPRLSFLNLAWTG-VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER-EAFLYIETSLLSFLDVS  287 (632)
Q Consensus       210 ~l~~L~~L~l~~n~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~ls  287 (632)
                      ++++|+.+.++.++ ++...                 +..--.+++.|+.+++.++...... -.....+|+.|+.+.++
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~-----------------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRG-----------------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             CCCceEEEeccccchhhhhh-----------------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence            46677777666653 22110                 0011114444555555544332221 11123356666666666


Q ss_pred             CCCCCchh-------hhhcCCCCCeeeccCCC-CCchHHHHHHhcCCCCcEEEccCCc-CcchhHHHHHhcCCCCcEEEc
Q 006752          288 NSSLSRFC-------FLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSL  358 (632)
Q Consensus       288 ~n~l~~~~-------~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L  358 (632)
                      +|......       .-.....++.+.++++. +++.....+... ++|+.+++-+|+ ++......+..++|+++...+
T Consensus       381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-RNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-cccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            66543221       12345677888888876 444455555554 888888888875 555666777788888877655


Q ss_pred             c
Q 006752          359 S  359 (632)
Q Consensus       359 ~  359 (632)
                      .
T Consensus       460 ~  460 (483)
T KOG4341|consen  460 F  460 (483)
T ss_pred             c
Confidence            4

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.2e-12  Score=124.55  Aligned_cols=211  Identities=20%  Similarity=0.241  Sum_probs=156.3

Q ss_pred             hcCCCccEEeccCCCCCch---hhhhcCCCCCeeeccCCCCCchHH-HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCC
Q 006752          276 IETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLP  351 (632)
Q Consensus       276 ~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  351 (632)
                      .++.+|+.+.+.++.+...   .....|++++.||++.|-+....+ ..++...++|+.|+++.|++...........++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            3678899999999988766   367789999999999998876432 344444599999999999876544433335678


Q ss_pred             CCcEEEccCCCCChHHHH-HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchh
Q 006752          352 NLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFI  430 (632)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  430 (632)
                      +|+.|.++.|.++-.... .+..+|+|+.|++..|........                                     
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-------------------------------------  240 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-------------------------------------  240 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-------------------------------------
Confidence            999999999999865444 345899999999999963222111                                     


Q ss_pred             hhcccccccccchHHhhcCCcccccccCccCCCCCc-cccccCcccccccccccccCCCcc-hhh-----hccCCCCcEE
Q 006752          431 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVS-LHQ-----LSSLSKLTNL  503 (632)
Q Consensus       431 ~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~-~~~-----~~~l~~L~~L  503 (632)
                                    ....+..|+.|||++|++-+.. ....+.++.|+.|+++.|.+..+. |+.     -..+++|++|
T Consensus       241 --------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L  306 (505)
T KOG3207|consen  241 --------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL  306 (505)
T ss_pred             --------------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence                          3445678999999999877632 244677999999999999988753 222     3567999999


Q ss_pred             eecCceeccC-CCCCCCCCCCcceEecCCCcccCh
Q 006752          504 SIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLTE  537 (632)
Q Consensus       504 ~ls~N~l~~~-~~~~l~~~~~L~~L~l~~N~l~~~  537 (632)
                      +++.|+|... ....+..+++|+.|.+..|++...
T Consensus       307 ~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  307 NISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ecccCccccccccchhhccchhhhhhccccccccc
Confidence            9999999653 124444567888888888887443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=3.7e-12  Score=117.94  Aligned_cols=130  Identities=22%  Similarity=0.275  Sum_probs=101.5

Q ss_pred             CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752          350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF  429 (632)
Q Consensus       350 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (632)
                      .+.|+++|+++|.|+. +-+.+.-.|.++.|++|+|.+...                                       
T Consensus       283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v---------------------------------------  322 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV---------------------------------------  322 (490)
T ss_pred             Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee---------------------------------------
Confidence            4568888888888763 445567788888899888888764                                       


Q ss_pred             hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752          430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  509 (632)
Q Consensus       430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~  509 (632)
                                    ..++.+++|+.||||+|.++. ...+=..+-++++|.|++|.|.+..  .+.++-+|..||+++|+
T Consensus       323 --------------~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  323 --------------QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             --------------hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh--hhHhhhhheeccccccc
Confidence                          346777889999999998876 3333346788899999999888643  67888899999999999


Q ss_pred             eccCC-CCCCCCCCCcceEecCCCcccC
Q 006752          510 LTNSG-LGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       510 l~~~~-~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      |.... ...+++++.|+++.+.+|++..
T Consensus       386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  386 IEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHHHhcccccccHHHHHhhcCCCccc
Confidence            87753 4667888999999999999733

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=7.6e-11  Score=105.22  Aligned_cols=129  Identities=28%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  331 (632)
Q Consensus       252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  331 (632)
                      ++.++++|++.+|.++.+....  ..+.+|+.|++++|.++.+..+..++.|+.|++++|+++.... .+...+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~--~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLG--ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-HHHHH-TT--EE
T ss_pred             cccccccccccccccccccchh--hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEE
Confidence            4446677777777776654321  2467888888888888888888889999999999999986543 333323899999


Q ss_pred             EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH---HHHHHhcCCCccEEEcc
Q 006752          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFIDIS  383 (632)
Q Consensus       332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~Ls  383 (632)
                      ++++|++.+...-...+.+|+|+.|++.+|+++..   -...+..+|+|+.||-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99999887643222236789999999999987643   34456789999999754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.9e-10  Score=102.67  Aligned_cols=126  Identities=19%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             hhhhcccccccccchHHhh-cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752          429 FIQQVGAETDLVLSLTALQ-NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  507 (632)
Q Consensus       429 ~l~~l~~~~~~l~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~  507 (632)
                      .+..|++.++.|+.++.++ .+.+|+.|++++|.|+..  +.+..++.|++|++++|+|+.+.+.....+++|++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            4678999999999888887 588999999999999984  4678899999999999999996543335799999999999


Q ss_pred             ceeccCC-CCCCCCCCCcceEecCCCcccChH-HHHHHHHHcCCeeeeecc
Q 006752          508 AVLTNSG-LGSFKPPRSLKLLDLHGGWLLTED-AILQFCKMHPRIEVWHEL  556 (632)
Q Consensus       508 N~l~~~~-~~~l~~~~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~~~  556 (632)
                      |+|.... ...+..+++|+.|++.+||+.... .-.......|.+++.+..
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            9998753 355667899999999999984333 233455566877665544

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=2.2e-10  Score=125.17  Aligned_cols=93  Identities=17%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC-CC
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RS  523 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-~~  523 (632)
                      .+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..++++++|+.|++++|++++.+|..+... ..
T Consensus       437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~  516 (623)
T PLN03150        437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH  516 (623)
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence            57788899999999999999899889999999999999999999999999999999999999999999989887653 46


Q ss_pred             cceEecCCCcccCh
Q 006752          524 LKLLDLHGGWLLTE  537 (632)
Q Consensus       524 L~~L~l~~N~l~~~  537 (632)
                      +..+++.+|+..|+
T Consensus       517 ~~~l~~~~N~~lc~  530 (623)
T PLN03150        517 RASFNFTDNAGLCG  530 (623)
T ss_pred             CceEEecCCccccC
Confidence            77889999987664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=4.1e-11  Score=111.11  Aligned_cols=129  Identities=21%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhh
Q 006752          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCF  405 (632)
Q Consensus       326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  405 (632)
                      ..|+++|+++|.|+...- .+ .-.|.++.|++++|.+....  .++.+++|+.||||+|.++.. ..+-          
T Consensus       284 q~LtelDLS~N~I~~iDE-Sv-KL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh----------  348 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDE-SV-KLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWH----------  348 (490)
T ss_pred             hhhhhccccccchhhhhh-hh-hhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhH----------
Confidence            455566666665543221 11 33556666666666655322  255566666666666655543 1110          


Q ss_pred             hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCC-ccccccCcccccccccccc
Q 006752          406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNA  484 (632)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n  484 (632)
                                         .-.|++..|.+..|.+..+..+..+.+|..||+++|+|... ....++++|.|+++.|.+|
T Consensus       349 -------------------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  349 -------------------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             -------------------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence                               00122333333333333334455666666677776666542 1234566666666666666


Q ss_pred             cCCC
Q 006752          485 SLTD  488 (632)
Q Consensus       485 ~l~~  488 (632)
                      .+.+
T Consensus       410 Pl~~  413 (490)
T KOG1259|consen  410 PLAG  413 (490)
T ss_pred             Cccc
Confidence            6665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=1.1e-11  Score=124.52  Aligned_cols=209  Identities=22%  Similarity=0.283  Sum_probs=149.6

Q ss_pred             CCCCcccchhcccc--CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCC
Q 006752          238 LSNCTIDSILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIG  314 (632)
Q Consensus       238 L~~~~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~  314 (632)
                      |++-++..+|....  .+..-...+++.|++..+|..+.  .+..|+.+.+..|.+..+ .++.++..|++++++.|++.
T Consensus        57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS  134 (722)
T KOG0532|consen   57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS  134 (722)
T ss_pred             cccchhhcCCCccccccccchhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence            33334444443333  23333456677777777666433  556777788888888777 67788888999999999887


Q ss_pred             chHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCC
Q 006752          315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG  394 (632)
Q Consensus       315 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~  394 (632)
                       ..|..++.+  -|+.|.+++|+++....+.  +..+.|..||.+.|++.. .|..++.+.+|+.|.+..|++... |. 
T Consensus       135 -~lp~~lC~l--pLkvli~sNNkl~~lp~~i--g~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~l-p~-  206 (722)
T KOG0532|consen  135 -HLPDGLCDL--PLKVLIVSNNKLTSLPEEI--GLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDL-PE-  206 (722)
T ss_pred             -cCChhhhcC--cceeEEEecCccccCCccc--ccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhC-CH-
Confidence             355555553  6899999999988654433  567889999999998874 566688889999999999998876 43 


Q ss_pred             ccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcc
Q 006752          395 QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  474 (632)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  474 (632)
                                                                        .+..+ .|..||+|+|+++. +|..|..|+
T Consensus       207 --------------------------------------------------El~~L-pLi~lDfScNkis~-iPv~fr~m~  234 (722)
T KOG0532|consen  207 --------------------------------------------------ELCSL-PLIRLDFSCNKISY-LPVDFRKMR  234 (722)
T ss_pred             --------------------------------------------------HHhCC-ceeeeecccCceee-cchhhhhhh
Confidence                                                              23333 48899999999988 788899999


Q ss_pred             cccccccccccCCCcchhhhc---cCCCCcEEeecCce
Q 006752          475 ELIHLSLRNASLTDVSLHQLS---SLSKLTNLSIRDAV  509 (632)
Q Consensus       475 ~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~ls~N~  509 (632)
                      .|++|-|.+|.+.. +|..+.   ..--.++|+..-++
T Consensus       235 ~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  235 HLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            99999999999987 444433   33445677777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=7.9e-10  Score=115.48  Aligned_cols=67  Identities=28%  Similarity=0.417  Sum_probs=35.1

Q ss_pred             hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752          446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  515 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  515 (632)
                      +.++.++..+.+.+|++.. .+..++.+++++.|++++|.++...+  ++.+.+|+.|++++|.++...+
T Consensus       228 ~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         228 LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            3444455555555555544 24444555555555555555555332  5555555555555555555433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3e-10  Score=105.43  Aligned_cols=190  Identities=24%  Similarity=0.271  Sum_probs=96.4

Q ss_pred             CccEEEccCCCCCHhHH-HHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCC-CCCchhhH-hhcCCCCCcEE
Q 006752          141 TLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAA-VLKMFPRLSFL  217 (632)
Q Consensus       141 ~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L  217 (632)
                      .|+++||+...++.... ..+..|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+ .++..... .+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46667777666654332 34556667777777777777666666666677777777665 34433222 34556666666


Q ss_pred             EccCCCCCC------CC-CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752          218 NLAWTGVTK------LP-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (632)
Q Consensus       218 ~l~~n~l~~------l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~  290 (632)
                      +++|+.+..      +. --++|+.|+++++.-.                     +...........|++|.+||++.|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeecccccc
Confidence            666665442      00 1244555555554321                     0000111122345555555555543


Q ss_pred             CCch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcC--CCCcEEEccCCcCcchhHHHHHhcCCCCc
Q 006752          291 LSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSNTRFSSAGVGILAGHLPNLE  354 (632)
Q Consensus       291 l~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  354 (632)
                      .-..   ..+..++.|++|.++.|..  .+|..+..+.  |+|.+|++.+|- .+...+.+...+++|+
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v-sdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV-SDTTMELLKEMLSHLK  390 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc-CchHHHHHHHhCcccc
Confidence            2211   4455566666666666642  2333322211  666777766652 2222333334455544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=8.7e-10  Score=115.15  Aligned_cols=192  Identities=30%  Similarity=0.433  Sum_probs=135.9

Q ss_pred             EEeccCCCC-CchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC-CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC
Q 006752          283 FLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG  360 (632)
Q Consensus       283 ~L~ls~n~l-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~  360 (632)
                      .+++..+.+ .....+...+.++.|++.+|.+++..+. .... . +|+.|++++|++.... ..+ +.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~-~~nL~~L~l~~N~i~~l~-~~~-~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLL-KSNLKELDLSDNKIESLP-SPL-RNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccc-hhhcccccccccchhhhh-hhh-hccccccccccCC
Confidence            344444444 2223344445666666666666643332 2221 2 6777777777776542 111 5688888888888


Q ss_pred             CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccc
Q 006752          361 TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV  440 (632)
Q Consensus       361 n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  440 (632)
                      |+++... ...+..+.|+.|++++|++... |.                                               
T Consensus       173 N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l-~~-----------------------------------------------  203 (394)
T COG4886         173 NDLSDLP-KLLSNLSNLNNLDLSGNKISDL-PP-----------------------------------------------  203 (394)
T ss_pred             chhhhhh-hhhhhhhhhhheeccCCccccC-ch-----------------------------------------------
Confidence            8887543 3344778888888888888875 33                                               


Q ss_pred             cchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCC
Q 006752          441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP  520 (632)
Q Consensus       441 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~  520 (632)
                          .......|++|.+++|.+.. .+..+..+..+..+.+.+|++... +..++.++++++|++++|+++....  +..
T Consensus       204 ----~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~  275 (394)
T COG4886         204 ----EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGS  275 (394)
T ss_pred             ----hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccc
Confidence                12344569999999996444 467788899999999999999873 6788899999999999999999654  888


Q ss_pred             CCCcceEecCCCccc
Q 006752          521 PRSLKLLDLHGGWLL  535 (632)
Q Consensus       521 ~~~L~~L~l~~N~l~  535 (632)
                      ..+++.|++++|.+.
T Consensus       276 ~~~l~~L~~s~n~~~  290 (394)
T COG4886         276 LTNLRELDLSGNSLS  290 (394)
T ss_pred             cCccCEEeccCcccc
Confidence            899999999999873

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=1.2e-09  Score=119.51  Aligned_cols=111  Identities=20%  Similarity=0.256  Sum_probs=99.9

Q ss_pred             CCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ  431 (632)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (632)
                      .++.|+|++|.+.+..|..++.+++|+.|+|++|.+.|.+|.                                      
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~--------------------------------------  460 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP--------------------------------------  460 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh--------------------------------------
Confidence            378899999999999999999999999999999999998887                                      


Q ss_pred             hcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccC-CCCcEEeecCcee
Q 006752          432 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVL  510 (632)
Q Consensus       432 ~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ls~N~l  510 (632)
                                   .+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+... .++..+++.+|..
T Consensus       461 -------------~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        461 -------------SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             -------------HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence                         56788999999999999999999999999999999999999999999988764 5778999999876


Q ss_pred             ccC
Q 006752          511 TNS  513 (632)
Q Consensus       511 ~~~  513 (632)
                      ..-
T Consensus       528 lc~  530 (623)
T PLN03150        528 LCG  530 (623)
T ss_pred             ccC
Confidence            543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=6.3e-10  Score=81.58  Aligned_cols=59  Identities=29%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             cccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCc
Q 006752          475 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  533 (632)
Q Consensus       475 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~  533 (632)
                      +|++|++++|+++.+.+.+|.++++|++|++++|+++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555555444455555555555555555555544555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=8.7e-10  Score=80.84  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=57.9

Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCcee
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  510 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l  510 (632)
                      ++|++|++++|+++...+..|..+++|++|++++|+++.+.+.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999998888999999999999999999999999999999999999999975

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=6e-11  Score=119.36  Aligned_cols=174  Identities=22%  Similarity=0.278  Sum_probs=108.2

Q ss_pred             CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  380 (632)
                      .--...|++.|++.. .|.....+ ..|+.+.+..|.+..... .+ ..+..|++|+++.|++.. .|..++.++ |+.|
T Consensus        75 tdt~~aDlsrNR~~e-lp~~~~~f-~~Le~liLy~n~~r~ip~-~i-~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSE-LPEEACAF-VSLESLILYHNCIRTIPE-AI-CNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVL  148 (722)
T ss_pred             cchhhhhcccccccc-CchHHHHH-HHHHHHHHHhccceecch-hh-hhhhHHHHhhhccchhhc-CChhhhcCc-ceeE
Confidence            334567777787763 44444444 677778888777764433 33 457788888888888864 445566664 8888


Q ss_pred             EccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc
Q 006752          381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT  460 (632)
Q Consensus       381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n  460 (632)
                      -+++|+++.. |..+                                                   +...+|..||.+.|
T Consensus       149 i~sNNkl~~l-p~~i---------------------------------------------------g~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  149 IVSNNKLTSL-PEEI---------------------------------------------------GLLPTLAHLDVSKN  176 (722)
T ss_pred             EEecCccccC-Cccc---------------------------------------------------ccchhHHHhhhhhh
Confidence            8888888764 5532                                                   23455666666666


Q ss_pred             CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752          461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      .+.. +|..++.+.+|+.|.+..|++... |..+.. -.|..||+|.|+++.+ |-.|..+..|++|-|.+|++..
T Consensus       177 ei~s-lpsql~~l~slr~l~vrRn~l~~l-p~El~~-LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  177 EIQS-LPSQLGYLTSLRDLNVRRNHLEDL-PEELCS-LPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhh-chHHhhhHHHHHHHHHhhhhhhhC-CHHHhC-CceeeeecccCceeec-chhhhhhhhheeeeeccCCCCC
Confidence            6655 455556666666666666666653 333442 3366666666666653 5566666666666666666533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=2.9e-10  Score=118.89  Aligned_cols=196  Identities=24%  Similarity=0.305  Sum_probs=98.1

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .+++|++|++++|.++.+..+..++.|+.|++++|.+.+..  .+..+ +.|+.+++++|++....... ...+.+++.+
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~--~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l  191 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS--GLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEEL  191 (414)
T ss_pred             hhhcchheeccccccccccchhhccchhhheeccCcchhcc--CCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence            34455555555555555544555555555555555544211  11112 45555555555555433311 1345566666


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      ++.+|.+...  ..+..+..+..+++..|.++..-+.                                           
T Consensus       192 ~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l-------------------------------------------  226 (414)
T KOG0531|consen  192 DLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL-------------------------------------------  226 (414)
T ss_pred             hccCCchhcc--cchHHHHHHHHhhcccccceeccCc-------------------------------------------
Confidence            6666655432  1222333344445566655543222                                           


Q ss_pred             cccccchHHhhcCC--cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCC
Q 006752          437 TDLVLSLTALQNLN--HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  514 (632)
Q Consensus       437 ~~~l~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  514 (632)
                                ..+.  +|+.+++++|.+... +..+..+..+..|++.+|++...-  .+...+.+..+....|++....
T Consensus       227 ----------~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  293 (414)
T KOG0531|consen  227 ----------NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE  293 (414)
T ss_pred             ----------ccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence                      1111  366677777666652 244555666777777777666532  3445556666666666655321


Q ss_pred             ---CCC-CCCCCCcceEecCCCcc
Q 006752          515 ---LGS-FKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       515 ---~~~-l~~~~~L~~L~l~~N~l  534 (632)
                         ... ....+.++.+++..|+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  294 AISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             hhhccccccccccccccccccCcc
Confidence               111 23446667777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=5.6e-10  Score=116.72  Aligned_cols=243  Identities=23%  Similarity=0.225  Sum_probs=163.4

Q ss_pred             CCCcEEEccCCCCCC----CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEecc
Q 006752          212 PRLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS  287 (632)
Q Consensus       212 ~~L~~L~l~~n~l~~----l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls  287 (632)
                      ..++.+.+..|.+..    +..+.+++.|++.+|.+..+...+..+++|++|++++|.++.+...   ..+..|+.|+++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~  148 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLS  148 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheec
Confidence            334444444444433    4556677777777777776655566777888888888887766543   245668889999


Q ss_pred             CCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752          288 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  367 (632)
Q Consensus       288 ~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  367 (632)
                      +|.++.+..+..++.|+.+++++|.+..........+ .+++.+.+.+|.+.......   .+..+..+++..|.++...
T Consensus       149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhcccchH---HHHHHHHhhcccccceecc
Confidence            9999888888888999999999999886554112333 78999999999876543332   2334445577788776422


Q ss_pred             HHHHhcCC--CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHH
Q 006752          368 ISYMSMMP--SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA  445 (632)
Q Consensus       368 ~~~l~~~~--~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  445 (632)
                      +  +....  .|+.+++++|++.... .                                                   .
T Consensus       225 ~--l~~~~~~~L~~l~l~~n~i~~~~-~---------------------------------------------------~  250 (414)
T KOG0531|consen  225 G--LNELVMLHLRELYLSGNRISRSP-E---------------------------------------------------G  250 (414)
T ss_pred             C--cccchhHHHHHHhcccCcccccc-c---------------------------------------------------c
Confidence            1  22222  3889999999887641 1                                                   2


Q ss_pred             hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcc---hhh-hccCCCCcEEeecCceeccCCCCC
Q 006752          446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS---LHQ-LSSLSKLTNLSIRDAVLTNSGLGS  517 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~-~~~l~~L~~L~ls~N~l~~~~~~~  517 (632)
                      +..+..+..|++.+|++...  ..+...+.+..+....|++....   ... ....+.++...+..|.+....+..
T Consensus       251 ~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (414)
T KOG0531|consen  251 LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD  324 (414)
T ss_pred             ccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccccc
Confidence            44567888899998888763  33456777888888888776421   111 456778888888888887765433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=2.4e-09  Score=119.53  Aligned_cols=294  Identities=20%  Similarity=0.205  Sum_probs=163.4

Q ss_pred             cCCCccEEEcCCCCC-CCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCC
Q 006752           88 AFRYLRSLNVADCRR-VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL  166 (632)
Q Consensus        88 ~~~~L~~L~L~~~~~-i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  166 (632)
                      .++.|++|-+..+.. +.......|..++.|++|||++|.. ....|..++++-+||+|+++++.+. ..|..+.+++.|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            456788887777652 4444555577788888888888743 3345677778888888888888877 367778888888


Q ss_pred             CEEEcCCCCCChHHHHhccCCCCccEEEecCCC--CCchhhHhhcCCCCCcEEEccCCCC---CCCCCCCCCC----EEE
Q 006752          167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ--VSNRGAAVLKMFPRLSFLNLAWTGV---TKLPNISSLE----CLN  237 (632)
Q Consensus       167 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l---~~l~~l~~L~----~L~  237 (632)
                      .+|++..+.....++.....+++|++|.+....  .+......+..+.+|+.+.......   ..+..+..|.    .+.
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS  700 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence            888888776544445555668888888876653  2223334445555555555543332   1122222222    333


Q ss_pred             CCCCcccchhccccCCCCCcEEEeeCCCCCchhhhh----hhh-cCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCC
Q 006752          238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF----LYI-ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSS  311 (632)
Q Consensus       238 L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~-~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n  311 (632)
                      +.++.....+..+..+.+|+.|.+.++....+....    ... .++++..+.+.++..... .+....++|+.|.+..+
T Consensus       701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~  780 (889)
T KOG4658|consen  701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSC  780 (889)
T ss_pred             hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecc
Confidence            333444455566667888888888888775432210    000 022333333333332222 34445678888888877


Q ss_pred             CCCchHHHHHHhcCCCCcEEEccCCcCcchh-HHHHHhcCCCCcEEEccCCCCChHHHHH---HhcCCCccEEEccCC
Q 006752          312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAG-VGILAGHLPNLEILSLSGTQIDDYAISY---MSMMPSLKFIDISNT  385 (632)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~~~L~~L~Ls~n  385 (632)
                      ...+.++...... ..++.+.+..+.+.+.. .... +.++++..+.+++=.+.......   +..+|.+..+.+.+|
T Consensus       781 ~~~e~~i~~~k~~-~~l~~~i~~f~~~~~l~~~~~l-~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  781 RLLEDIIPKLKAL-LELKELILPFNKLEGLRMLCSL-GGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             cccccCCCHHHHh-hhcccEEecccccccceeeecC-CCCceeEecccCccchhheehhcCcccccCccccccceecc
Confidence            6554444444444 45555555555554431 2111 34555555555443322211111   223455555555553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.75  E-value=2e-08  Score=92.31  Aligned_cols=248  Identities=19%  Similarity=0.190  Sum_probs=144.0

Q ss_pred             hhcCCCCccEEEccCCCCCHhHHHHh----cCCCCCCEEEcCCCC---CChHHH-------HhccCCCCccEEEecCCCC
Q 006752          135 HLLSISTLEKLWLSETGLTADGIALL----SSLQNLSVLDLGGLP---VTDLVL-------RSLQVLTKLEYLDLWGSQV  200 (632)
Q Consensus       135 ~l~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~---i~~~~~-------~~l~~l~~L~~L~L~~n~l  200 (632)
                      .+..+..+..++|++|.|......++    .+-.+|+..+++.-.   ..+.++       .++-.||+|+..+|+.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34457778888888888876554443    345677777766522   222222       2345677777777777766


Q ss_pred             CchhhH----hhcCCCCCcEEEccCCCCCCCCCC---CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhh
Q 006752          201 SNRGAA----VLKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF  273 (632)
Q Consensus       201 ~~~~~~----~l~~l~~L~~L~l~~n~l~~l~~l---~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  273 (632)
                      ....|.    .+++-+.|++|.+++|.+..++.-   +.|.+|        ..-.....-|.|+++....|++...+...
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nKKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNKKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHhhhccCCCceEEEeccchhccCcHHH
Confidence            554443    334455566666666655433210   000000        00112235566777777777765533221


Q ss_pred             ---hhhcCCCccEEeccCCCCCch-------hhhhcCCCCCeeeccCCCCCchHHHHHHhcC---CCCcEEEccCCcCcc
Q 006752          274 ---LYIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSS  340 (632)
Q Consensus       274 ---~~~~~~~L~~L~ls~n~l~~~-------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~  340 (632)
                         .+..-..|+.+.+..|.+...       ..+..+++|+.||+.+|.++-.+...++...   +.|++|.+.+|-++.
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence               222235677777777777543       3455678888888888887755444333321   567888888888777


Q ss_pred             hhHHHHHhc-----CCCCcEEEccCCCCChHHHH-----HH--hcCCCccEEEccCCccccc
Q 006752          341 AGVGILAGH-----LPNLEILSLSGTQIDDYAIS-----YM--SMMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       341 ~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~-----~l--~~~~~L~~L~Ls~n~i~~~  390 (632)
                      .+...++..     .|+|..|...+|.+.+.+..     .+  ..+|-|..|.+.+|++...
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            665554432     46888888888865543211     12  2577788888888887653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.71  E-value=6.5e-08  Score=89.03  Aligned_cols=247  Identities=17%  Similarity=0.133  Sum_probs=154.2

Q ss_pred             HHhhhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCC---CCCHhHH-------HHhcCCCCCCEEEcCC
Q 006752          108 LWALTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSET---GLTADGI-------ALLSSLQNLSVLDLGG  173 (632)
Q Consensus       108 ~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n---~i~~~~~-------~~~~~l~~L~~L~L~~  173 (632)
                      ...+..+..++.++||+| .+......+++    +-.+|+..+++.-   +.....+       .++.+||+|+..+|+.
T Consensus        23 ~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          23 VEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            345566889999999999 67777777665    4578888888764   2222232       4566899999999999


Q ss_pred             CCCChHHHH----hccCCCCccEEEecCCCCCchhh----HhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccc
Q 006752          174 LPVTDLVLR----SLQVLTKLEYLDLWGSQVSNRGA----AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS  245 (632)
Q Consensus       174 n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~  245 (632)
                      |.+....|.    .+++-+.|++|.+++|.+.....    .++..+...          .....-|.|+......|++..
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n----------KKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN----------KKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH----------hhhccCCCceEEEeccchhcc
Confidence            998765544    44678999999999998753322    222111000          011223444455555554442


Q ss_pred             hh-----ccccCCCCCcEEEeeCCCCCchh----hhhhhhcCCCccEEeccCCCCCch------hhhhcCCCCCeeeccC
Q 006752          246 IL-----EGNENKAPLAKISLAGTTFINER----EAFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSS  310 (632)
Q Consensus       246 ~~-----~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~L~l~~  310 (632)
                      .+     ..+....+|+++.+..|.+....    .......+.+|+.||+..|.++..      .++...+.|+.|.+.+
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            22     12223346666666666554321    112234567777777777777644      3455566788888888


Q ss_pred             CCCCchHHHHHHhc-----CCCCcEEEccCCcCcch------hHHHHHhcCCCCcEEEccCCCCCh
Q 006752          311 SMIGDDSVEMVACV-----GANLRNLNLSNTRFSSA------GVGILAGHLPNLEILSLSGTQIDD  365 (632)
Q Consensus       311 n~l~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~------~~~~~~~~~~~L~~L~L~~n~l~~  365 (632)
                      |-++..+...+...     .++|..|...+|.+.+.      .+...-+.+|-|..|.+.+|++..
T Consensus       252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            88776665554432     27888888888865442      222223567888888888898764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=9e-09  Score=115.03  Aligned_cols=109  Identities=23%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             CCCCcCEEeccCCCC-CChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCcc
Q 006752          113 GMTCLKELDLSRCVK-VTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE  191 (632)
Q Consensus       113 ~l~~L~~L~L~~~~~-l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  191 (632)
                      .++.|++|-+.+|.. +.......|..++.|++|||++|.--+..|..++.+-+|++|+++++.+.. +|..++++..|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhh
Confidence            344566666665531 333333445556666666666654444555666666666666666666553 555666666666


Q ss_pred             EEEecCCCCCchhhHhhcCCCCCcEEEccCC
Q 006752          192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT  222 (632)
Q Consensus       192 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  222 (632)
                      +|++..+.-....+.....+++|++|.+...
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeecc
Confidence            6666655433333444455566666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=3.9e-09  Score=109.38  Aligned_cols=177  Identities=25%  Similarity=0.294  Sum_probs=95.0

Q ss_pred             hhcCCCccEEeccCCCCCchhhhhcC-CCCCeeeccCCCCCchHHHHHHh----cC-----CCCcEEEccCCcCcchhHH
Q 006752          275 YIETSLLSFLDVSNSSLSRFCFLTQM-KALEHLDLSSSMIGDDSVEMVAC----VG-----ANLRNLNLSNTRFSSAGVG  344 (632)
Q Consensus       275 ~~~~~~L~~L~ls~n~l~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~----~~-----~~L~~L~l~~n~l~~~~~~  344 (632)
                      ...+.+|+.|.+.+|.+.....+..+ ..|++|-..+ .++ ..-..+..    .+     ..|...+.++|++..... 
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~-  181 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE-  181 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH-
Confidence            33567788888888877655222221 2344443322 111 01111111    00     245666666666553221 


Q ss_pred             HHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccc
Q 006752          345 ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS  424 (632)
Q Consensus       345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (632)
                      .+ .-++.|+.|+|++|+++...  .+..|+.|++|||++|.+... |..                              
T Consensus       182 SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v-p~l------------------------------  227 (1096)
T KOG1859|consen  182 SL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV-PQL------------------------------  227 (1096)
T ss_pred             HH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc-ccc------------------------------
Confidence            11 34566777777777776533  566777777777777776653 331                              


Q ss_pred             cccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEE
Q 006752          425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNL  503 (632)
Q Consensus       425 ~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  503 (632)
                                          .-.+|. |+.|.|++|.++.  ...+.++.+|+.||+++|-|.+... ..+..+..|+.|
T Consensus       228 --------------------~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  228 --------------------SMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             --------------------chhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence                                122333 7777777776665  2445667777777777776655321 123445566666


Q ss_pred             eecCceec
Q 006752          504 SIRDAVLT  511 (632)
Q Consensus       504 ~ls~N~l~  511 (632)
                      +|.+|.+-
T Consensus       285 ~LeGNPl~  292 (1096)
T KOG1859|consen  285 WLEGNPLC  292 (1096)
T ss_pred             hhcCCccc
Confidence            66666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=7.7e-08  Score=89.72  Aligned_cols=176  Identities=18%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             CCCCccEEEccCCCCCH--hHHHHhcCCCCCCEEEcCCCCCChHHHHhc-cCCCCccEEEecCCCCCch-hhHhhcCCCC
Q 006752          138 SISTLEKLWLSETGLTA--DGIALLSSLQNLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNR-GAAVLKMFPR  213 (632)
Q Consensus       138 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~  213 (632)
                      .++.++.+||.+|.|+.  .+...+.++|.|+.|+++.|.+...+ ..+ ....+|+.|-|.+..+.-. ....+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            45666666666666654  22234456667777777766665432 122 2345666666666655422 2234456666


Q ss_pred             CcEEEccCCCCCCC-------C-CCCCCCEEECCCCcccc---hhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCcc
Q 006752          214 LSFLNLAWTGVTKL-------P-NISSLECLNLSNCTIDS---ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS  282 (632)
Q Consensus       214 L~~L~l~~n~l~~l-------~-~l~~L~~L~L~~~~l~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  282 (632)
                      +++|.++.|.+..+       . -.+.+++|+...|....   +-..-..++++..+.+..|.+.+....-.+...+.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            67776666643321       1 11345555555554431   1111124556666666666665544433444455555


Q ss_pred             EEeccCCCCCch---hhhhcCCCCCeeeccCCCCC
Q 006752          283 FLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIG  314 (632)
Q Consensus       283 ~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~  314 (632)
                      .|+++.+++.+.   ..+..+++|..|.++++.+.
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            555555555444   44455555555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=8.7e-09  Score=106.85  Aligned_cols=124  Identities=24%  Similarity=0.311  Sum_probs=73.0

Q ss_pred             CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCC----CCCCEEECCC
Q 006752          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI----SSLECLNLSN  240 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l----~~L~~L~L~~  240 (632)
                      .|.+.+.++|.+.- ...++.-++.|+.|+|++|+++...  .+..+++|++|||++|.+..++.+    ..|..|.+++
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            45555566665543 2344555666777777777766443  566677777777777766665532    2366666666


Q ss_pred             CcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752          241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (632)
Q Consensus       241 ~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  292 (632)
                      |.++.+ .++.++.+|+.|+++.|-+.+.........+..|+.|.|.+|.+-
T Consensus       242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666544 334556666666666666555443333445556666666666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.44  E-value=5.6e-07  Score=98.27  Aligned_cols=231  Identities=19%  Similarity=0.247  Sum_probs=145.5

Q ss_pred             hhHHHHHHHHHHHhchhHHHHHHHhhhcccCCcHHHHHHHHHHHHhcccc-chhhHHh--hcCcccEEeccCCCCCCHHH
Q 006752            6 ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-FPSLLEV--FKHNAEAIELRGENSVDAEW   82 (632)
Q Consensus         6 ~~~l~~lc~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-~p~~~~~--~~~~l~~L~Ls~~~~~~~~~   82 (632)
                      ++++.++...+++.....   -.+.. .-..+++...+.+...+...... .+.....  ..-+++..++.+. ......
T Consensus         2 ~~sl~~~a~~~ia~~i~n---g~y~~-~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~-~~~~~~   76 (699)
T KOG3665|consen    2 VSSLADIACQKIAEYIQN---GSYNN-LQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNV-TLQHQT   76 (699)
T ss_pred             CCchhhhhHHHHHHHHhc---CCccc-cceecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeeccce-ecchhH
Confidence            356677777766655321   11111 33356666666666666543222 1111111  1236888888877 344555


Q ss_pred             HHHhccCCCccEEEcCCCCCCCchhHH-----------hh-h--CCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEc
Q 006752           83 MAYLGAFRYLRSLNVADCRRVTSSALW-----------AL-T--GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWL  147 (632)
Q Consensus        83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~-----------~l-~--~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L  147 (632)
                      ...+.... |++|.+.+...+......           .+ .  .-.+|++||+++...+....+..++ -+|+|+.|.+
T Consensus        77 ~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i  155 (699)
T KOG3665|consen   77 LEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI  155 (699)
T ss_pred             HHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEe
Confidence            55555555 888888875422211111           11 1  2357999999998777777777777 5899999999


Q ss_pred             cCCCCCH-hHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCcEEEccCCCCC
Q 006752          148 SETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT  225 (632)
Q Consensus       148 ~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~  225 (632)
                      .+-.+.. .......++|+|..||++++.++..  ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|.....
T Consensus       156 ~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  156 SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             cCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            9876643 3345566889999999999988875  677888999998887766553 33345677888888888876544


Q ss_pred             CCC-----------CCCCCCEEECCCCccc
Q 006752          226 KLP-----------NISSLECLNLSNCTID  244 (632)
Q Consensus       226 ~l~-----------~l~~L~~L~L~~~~l~  244 (632)
                      .-+           .+|+|+.||.+++.+.
T Consensus       234 ~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  234 DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            311           3667777777776665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=3e-07  Score=85.88  Aligned_cols=206  Identities=17%  Similarity=0.265  Sum_probs=111.2

Q ss_pred             CCCEEEcCCCCCChHHH-Hhc-cCCCCccEEEecCCCCCc--hhhHhhcCCCCCcEEEccCCCCCC----CC-CCCCCCE
Q 006752          165 NLSVLDLGGLPVTDLVL-RSL-QVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTGVTK----LP-NISSLEC  235 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~-~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~----l~-~l~~L~~  235 (632)
                      -++.+.+.++.|..... ..| ..++.++.+||.+|.|++  .+...+.++|.|+.|+++.|.+..    +| ...+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34455555665543321 222 346778888888888764  344456777888888887776653    33 4456666


Q ss_pred             EECCCCccc--chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCC
Q 006752          236 LNLSNCTID--SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI  313 (632)
Q Consensus       236 L~L~~~~l~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l  313 (632)
                      |-|.+..+.  .....+..+|.+++|.++.|.+..               +.+..+....     .-+.+++|....|..
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq---------------~n~Dd~c~e~-----~s~~v~tlh~~~c~~  185 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ---------------LNLDDNCIED-----WSTEVLTLHQLPCLE  185 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh---------------hccccccccc-----cchhhhhhhcCCcHH
Confidence            666665554  222233344444555554442211               1111111111     112334444443321


Q ss_pred             Cc-hHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH-HHHHHhcCCCccEEEccCCccccc
Q 006752          314 GD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       314 ~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~i~~~  390 (632)
                      .- .....+...++++..+.+..|.+.+.....-....|.+.-|+|+.++|.+- ...++..+++|..|.++++++...
T Consensus       186 ~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  186 QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            10 001122233377777777777776655544345567777778888777642 345567788888888888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.34  E-value=7.9e-07  Score=97.13  Aligned_cols=137  Identities=20%  Similarity=0.313  Sum_probs=74.8

Q ss_pred             CcccEEeccCCCCCCHHHHHHhc-cCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           65 HNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      .+|++||++|...+...|+..++ .+|.|++|.+++-....+.......++|+|..||+|++ .++..  ..++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence            45667777776555555655554 45777777776655223322333336677777777766 44443  4455666666


Q ss_pred             EEEccCCCCCH-hHHHHhcCCCCCCEEEcCCCCCChH--HH----HhccCCCCccEEEecCCCCCchh
Q 006752          144 KLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDL--VL----RSLQVLTKLEYLDLWGSQVSNRG  204 (632)
Q Consensus       144 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~--~~----~~l~~l~~L~~L~L~~n~l~~~~  204 (632)
                      .|.+.+-.+.. .....+..+++|++||++.......  +.    +.-..+|+|+.||.+++.+....
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            66666655543 2223455666777777665442221  11    11134566666666666555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=2.8e-07  Score=76.10  Aligned_cols=129  Identities=23%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             CCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752          352 NLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF  429 (632)
Q Consensus       352 ~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (632)
                      .+..++|+.|++..  ..+..+.....|+..+|++|.+... |..                                   
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~k-----------------------------------   71 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKK-----------------------------------   71 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHH-----------------------------------
Confidence            56677778887642  2334455666777788888887765 331                                   


Q ss_pred             hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752          430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  509 (632)
Q Consensus       430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~  509 (632)
                                     .-...+.++.|++++|.|++ +|..+..++.|+.|+++.|.+.. .|+.+..+.+|-.|+..+|.
T Consensus        72 ---------------ft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   72 ---------------FTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ---------------Hhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCc
Confidence                           12334577888888888887 56668888888888888888876 56666667788888888887


Q ss_pred             eccCCCCCCCCCCCcceEecCCCcc
Q 006752          510 LTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       510 l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      +..+..+ +-.....-..+++++++
T Consensus       135 ~~eid~d-l~~s~~~al~~lgnepl  158 (177)
T KOG4579|consen  135 RAEIDVD-LFYSSLPALIKLGNEPL  158 (177)
T ss_pred             cccCcHH-HhccccHHHHHhcCCcc
Confidence            7765434 22223334455566665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.09  E-value=4.9e-06  Score=89.58  Aligned_cols=244  Identities=28%  Similarity=0.288  Sum_probs=137.9

Q ss_pred             HHHhccCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCC-CCCChhh---HhhhcCCCCccEEEccCCC-CCHhH
Q 006752           83 MAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRC-VKVTDAG---MKHLLSISTLEKLWLSETG-LTADG  156 (632)
Q Consensus        83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~-~~l~~~~---~~~l~~l~~L~~L~L~~n~-i~~~~  156 (632)
                      ......+++|+.|.+..|..+++.....+. .++.|++|+++++ .......   ......+++|+.|+++++. +++..
T Consensus       181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence            344445788888888888767765544444 7888888888872 2222221   1223356888888888886 66665


Q ss_pred             HHHhc-CCCCCCEEEcCCCC-CChHHHHhc-cCCCCccEEEecCCCCC-ch-hhHhhcCCCCCcEEEccCCCCCCCCCCC
Q 006752          157 IALLS-SLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQVS-NR-GAAVLKMFPRLSFLNLAWTGVTKLPNIS  231 (632)
Q Consensus       157 ~~~~~-~l~~L~~L~L~~n~-i~~~~~~~l-~~l~~L~~L~L~~n~l~-~~-~~~~l~~l~~L~~L~l~~n~l~~l~~l~  231 (632)
                      ...+. .+++|++|.+.+|. +++.....+ ..++.|++|+++++... +. .......+++++.+.+....     .+.
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----~c~  335 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----GCP  335 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----CCc
Confidence            55555 37888888877777 566554444 45777888888887542 22 22234456666665543321     134


Q ss_pred             CCCEEECCCCcc----cchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeee
Q 006752          232 SLECLNLSNCTI----DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD  307 (632)
Q Consensus       232 ~L~~L~L~~~~l----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~  307 (632)
                      .++.+.+.++..    .........+++++.+.+..+.............|+.|. ..+..       -......++.|+
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~-------~~~~~~~l~~L~  407 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL-------RLCRSDSLRVLN  407 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH-------HhccCCccceEe
Confidence            444444443322    111123336777777777776633333223344455552 11111       111222378888


Q ss_pred             ccCCC-CCchHHHHHHhcCCCCcEEEccCCcCc
Q 006752          308 LSSSM-IGDDSVEMVACVGANLRNLNLSNTRFS  339 (632)
Q Consensus       308 l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~  339 (632)
                      ++.+. .++.........+..++.+++.++...
T Consensus       408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cccCccccccchHHHhhhhhccccCCccCcccc
Confidence            88765 444444444332367788888887643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.00  E-value=7.9e-06  Score=87.99  Aligned_cols=132  Identities=27%  Similarity=0.346  Sum_probs=83.7

Q ss_pred             CCCCcEEEeeCCCCCc-hhhhhhhhcCCCccEEeccCC-CCCch------hhhhcCCCCCeeeccCCC-CCchHHHHHHh
Q 006752          253 KAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSM-IGDDSVEMVAC  323 (632)
Q Consensus       253 ~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~  323 (632)
                      ++.|+.+.+.++.... .........++.|+.|+++++ .....      .....+++|+.|+++.+. +++.....+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4455555555442221 111112335566666666552 11110      234456788888888877 88888888888


Q ss_pred             cCCCCcEEEccCCc-CcchhHHHHHhcCCCCcEEEccCCCC-ChH-HHHHHhcCCCccEEEccC
Q 006752          324 VGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQI-DDY-AISYMSMMPSLKFIDISN  384 (632)
Q Consensus       324 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~l~~~~~L~~L~Ls~  384 (632)
                      .|++|++|.+.+|. +++.....+...|+.|++|++++|.. ++. ......+|++|+.|.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            77899999988887 78888888888889999999998764 333 233344677777765543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.2e-05  Score=71.43  Aligned_cols=101  Identities=17%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             CCcEEEccCCCCC---CCCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccC
Q 006752          213 RLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN  288 (632)
Q Consensus       213 ~L~~L~l~~n~l~---~l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~  288 (632)
                      +...+|+++|.+.   .+|.++.|.+|.+.+|+++.+.+.+. ..++|..|.+.+|.+..+........|++|++|.+-+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            4556666666554   35677888888888888888877776 5667899999998888777666677888899998888


Q ss_pred             CCCCch-----hhhhcCCCCCeeeccCCCC
Q 006752          289 SSLSRF-----CFLTQMKALEHLDLSSSMI  313 (632)
Q Consensus       289 n~l~~~-----~~l~~~~~L~~L~l~~n~l  313 (632)
                      |.++..     ..+..+|+|+.||+..-.-
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhhhH
Confidence            888765     4566788888888876443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=2.6e-06  Score=70.52  Aligned_cols=62  Identities=19%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      ..|+..++++|.+... |..|....|.++.|++++|++.+. |..++.++.|+.|+++.|.+..
T Consensus        53 ~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             ceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCcccc
Confidence            3444555555555432 222333444555555555555432 2235555555555555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=7.9e-06  Score=54.62  Aligned_cols=37  Identities=30%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             cccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          475 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       475 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      +|++|++++|+|+++ |..++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCC
Confidence            456666666666653 3345666666666666666554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=1.8e-05  Score=70.23  Aligned_cols=108  Identities=21%  Similarity=0.306  Sum_probs=82.6

Q ss_pred             CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (632)
Q Consensus       278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  357 (632)
                      ......+|+++|.+.....+..++.|.+|.+.+|+|+...|..-... ++|+.|.+.+|.+.....-.-...||+|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchhccCCccceee
Confidence            45667888999998888888999999999999999997766544444 89999999999876543322225699999999


Q ss_pred             ccCCCCChHHH---HHHhcCCCccEEEccCCc
Q 006752          358 LSGTQIDDYAI---SYMSMMPSLKFIDISNTD  386 (632)
Q Consensus       358 L~~n~l~~~~~---~~l~~~~~L~~L~Ls~n~  386 (632)
                      +-+|+++...-   ..+..+++|+.||...-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            99998775322   234578999999987654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=5.7e-05  Score=50.50  Aligned_cols=38  Identities=26%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             CCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch
Q 006752          232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE  269 (632)
Q Consensus       232 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~  269 (632)
                      +|++|++++|+++++|+.+..+++|+.|++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            46666666666666666566666666666666666544

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.52  E-value=1.4e-05  Score=83.82  Aligned_cols=296  Identities=25%  Similarity=0.284  Sum_probs=157.7

Q ss_pred             ccEEEcCCCCCCCchhHHhh----hCCCCcCEEeccCCCCCChhhHhhhcC----C-CCccEEEccCCCCCHhH----HH
Q 006752           92 LRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDAGMKHLLS----I-STLEKLWLSETGLTADG----IA  158 (632)
Q Consensus        92 L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~~~l~~~~~~~l~~----l-~~L~~L~L~~n~i~~~~----~~  158 (632)
                      +..|.|.+|. +.+.....+    ...+.|+.|++++| .+.+.+...+.+    . +.|++|++..|.++...    ..
T Consensus        89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            5666666666 544444333    34566666666666 455554444431    1 34556666666555432    23


Q ss_pred             HhcCCCCCCEEEcCCCCCChH----HHHhcc----CCCCccEEEecCCCCCchhhH----hhcCCCC-CcEEEccCCCCC
Q 006752          159 LLSSLQNLSVLDLGGLPVTDL----VLRSLQ----VLTKLEYLDLWGSQVSNRGAA----VLKMFPR-LSFLNLAWTGVT  225 (632)
Q Consensus       159 ~~~~l~~L~~L~L~~n~i~~~----~~~~l~----~l~~L~~L~L~~n~l~~~~~~----~l~~l~~-L~~L~l~~n~l~  225 (632)
                      .+.....++.++++.|.+...    .+..+.    ...++++|.+.+|.++.....    .+...+. +..+++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            444566666666666665321    122222    355667777777666533222    2333444 555666666655


Q ss_pred             C---------CCCC-CCCCEEECCCCccc-----chhccccCCCCCcEEEeeCCCCCchhhhhh---hhcCCCccEEecc
Q 006752          226 K---------LPNI-SSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFL---YIETSLLSFLDVS  287 (632)
Q Consensus       226 ~---------l~~l-~~L~~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~ls  287 (632)
                      +         +..+ ..++.++++.|.++     .+...+..++.++++.++.|.+........   ......+.++.+.
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~  326 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG  326 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence            3         2223 45677777777766     344555567777788888777765432211   1223444445555


Q ss_pred             CCCCCch-------hhhhcCCCCCeeeccCCCCCchHHHHHH----hcCCCCcEEEccCCcCcchhHHH---HHhcCCCC
Q 006752          288 NSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSAGVGI---LAGHLPNL  353 (632)
Q Consensus       288 ~n~l~~~-------~~l~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L  353 (632)
                      ++.....       .....-........+++...+..-..+.    .....+..+++..+.+.+.....   .....+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l  406 (478)
T KOG4308|consen  327 GTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKL  406 (478)
T ss_pred             ccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchh
Confidence            4433221       1111112233344444544443332222    11133566666666655543322   22456789


Q ss_pred             cEEEccCCCCChHHHHHHh-----cCCCccEEEccCCccccc
Q 006752          354 EILSLSGTQIDDYAISYMS-----MMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~Ls~n~i~~~  390 (632)
                      +.++++.|...+..+..+.     +. .++.++++.|.++..
T Consensus       407 ~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~  447 (478)
T KOG4308|consen  407 EILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITAL  447 (478)
T ss_pred             hhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhc
Confidence            9999999877665554443     44 888999999888754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.00011  Score=63.11  Aligned_cols=122  Identities=17%  Similarity=0.232  Sum_probs=56.3

Q ss_pred             HhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCC
Q 006752           85 YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ  164 (632)
Q Consensus        85 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~  164 (632)
                      .|.++++|+.+.+.. . +......+|.++++|+.+++.++  +...+...|.++++|+.+.+.. .+.......|..++
T Consensus         7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence            455666777777664 2 55555566777777777777663  4444555666676777777754 33333344566677


Q ss_pred             CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC
Q 006752          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL  214 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  214 (632)
                      +|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777777654 444444556665 777777665 3334444566666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00041  Score=70.15  Aligned_cols=54  Identities=9%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCC
Q 006752          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT  336 (632)
Q Consensus       278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  336 (632)
                      +..++.|++++|.++.++.+  .++|++|.+++|.--...|..+.   ++|++|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh---hhhhheEccCc
Confidence            45566666666655544421  23455555555332222222221   34555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.42  E-value=1.2e-05  Score=84.30  Aligned_cols=43  Identities=37%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             CCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhH
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGV  343 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~  343 (632)
                      +.++.++++.|.+++.....+...   ++.++++.+++|.+.+...
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence            455666666666655444333322   1456666666666655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.36  E-value=0.00085  Score=67.92  Aligned_cols=35  Identities=9%  Similarity=0.165  Sum_probs=18.3

Q ss_pred             hhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCC
Q 006752          111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSET  150 (632)
Q Consensus       111 l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n  150 (632)
                      +..++++++|++++| .++...  .  -.++|++|.+++|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc   82 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP--V--LPNELTEITIENC   82 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCC
Confidence            444666677777766 443321  1  1234666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=2.7e-05  Score=72.44  Aligned_cols=59  Identities=25%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      .+.++|+..+|.++++..   +..++.|+.|.|+-|+|+...|  +..|++|+.|+|..|.|..
T Consensus        19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s   77 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES   77 (388)
T ss_pred             HHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc
Confidence            345555666655554332   2345566666666665554332  4555566666665555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=9.2e-05  Score=68.79  Aligned_cols=107  Identities=26%  Similarity=0.359  Sum_probs=75.5

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCC--CCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCc
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE  354 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  354 (632)
                      ....|+.+++.+..++.+..+..+++|++|.++.|  ++..........+ ++|+++++++|++.....-.-...+++|.
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccchhhhhcchh
Confidence            45677778888888888888888899999999999  5554443333333 99999999999887522211124577899


Q ss_pred             EEEccCCCCC---hHHHHHHhcCCCccEEEccC
Q 006752          355 ILSLSGTQID---DYAISYMSMMPSLKFIDISN  384 (632)
Q Consensus       355 ~L~L~~n~l~---~~~~~~l~~~~~L~~L~Ls~  384 (632)
                      .|++.+|..+   +--...|.-+++|++|+-..
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            9999988654   33344566778888876544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.27  E-value=0.00019  Score=61.69  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCc
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  524 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L  524 (632)
                      +|.++++++.+.+.+ .+.......|..+++|+.+++..+ +..+....|.++ .|+.+.+.+ .++.+....|.++++|
T Consensus        53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            345555555555544 333333344555556666665543 444444455555 555555554 3444444445544443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.00028  Score=62.94  Aligned_cols=82  Identities=33%  Similarity=0.548  Sum_probs=43.3

Q ss_pred             ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhC-CCCcCEEeccCCCCCChhhHhhhcCCCCccEE
Q 006752           67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTLEKL  145 (632)
Q Consensus        67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L  145 (632)
                      ++.+|=+++ .+.....+.+.+++.++.|.+.+|..+.+..++.+++ .++|+.|++++|+.+++.+...+..+++|+.|
T Consensus       103 IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            444554444 2444444555555555555555555555555555552 34555555555555555555555555555555


Q ss_pred             EccC
Q 006752          146 WLSE  149 (632)
Q Consensus       146 ~L~~  149 (632)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00027  Score=65.71  Aligned_cols=70  Identities=23%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCEEECCCC--ccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCc
Q 006752          224 VTKLPNISSLECLNLSNC--TID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR  293 (632)
Q Consensus       224 l~~l~~l~~L~~L~L~~~--~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  293 (632)
                      ++.+|.+++|++|.++.|  ++. +++.....+++|+++.+++|++..+...-....+.+|..|++.+|..+.
T Consensus        58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            344667778888888888  443 4444444557777777777766543332233345555566665555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=7.6e-05  Score=69.54  Aligned_cols=82  Identities=21%  Similarity=0.219  Sum_probs=42.6

Q ss_pred             CCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHH-HHHHhcCCCCcEEEc
Q 006752          255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNL  333 (632)
Q Consensus       255 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l  333 (632)
                      +.++|+..||.+.++...   ..++.|+.|.|+-|+++....+..|++|++|.|..|.|.+..- ..+.++ ++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHhh
Confidence            445555556555554322   2455566666666666665555566666666666655554221 222333 55555555


Q ss_pred             cCCcCcc
Q 006752          334 SNTRFSS  340 (632)
Q Consensus       334 ~~n~l~~  340 (632)
                      ..|.-.+
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            5554433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.00068  Score=60.52  Aligned_cols=83  Identities=28%  Similarity=0.376  Sum_probs=71.5

Q ss_pred             CccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcC-CCCccEEEccCC-CCCHhHHHHhcCCCCCCE
Q 006752           91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSET-GLTADGIALLSSLQNLSV  168 (632)
Q Consensus        91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~-l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~  168 (632)
                      .++.++-+++. |..++.+.+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++| +|+......+..+++|+.
T Consensus       102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            57788889888 888899999999999999999999888888888875 689999999988 788888888888889988


Q ss_pred             EEcCCC
Q 006752          169 LDLGGL  174 (632)
Q Consensus       169 L~L~~n  174 (632)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            888753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.92  E-value=0.017  Score=31.94  Aligned_cols=19  Identities=32%  Similarity=0.308  Sum_probs=10.0

Q ss_pred             CcEEeecCceeccCCCCCCC
Q 006752          500 LTNLSIRDAVLTNSGLGSFK  519 (632)
Q Consensus       500 L~~L~ls~N~l~~~~~~~l~  519 (632)
                      |++||+++|+++. +|..|+
T Consensus         2 L~~Ldls~n~l~~-ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTS-IPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESE-EGTTTT
T ss_pred             ccEEECCCCcCEe-CChhhc
Confidence            5566666666653 344443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.57  E-value=0.013  Score=32.42  Aligned_cols=12  Identities=42%  Similarity=0.415  Sum_probs=6.3

Q ss_pred             ccccccccccCC
Q 006752          476 LIHLSLRNASLT  487 (632)
Q Consensus       476 L~~L~Ls~n~l~  487 (632)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.01  E-value=0.073  Score=30.07  Aligned_cols=21  Identities=52%  Similarity=0.654  Sum_probs=10.5

Q ss_pred             CCCcEEEccCCCCChHHHHHH
Q 006752          351 PNLEILSLSGTQIDDYAISYM  371 (632)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l  371 (632)
                      ++|++|++++|++++....++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            455556666665555555444

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.54  E-value=0.13  Score=29.74  Aligned_cols=22  Identities=50%  Similarity=0.896  Sum_probs=11.4

Q ss_pred             CCcCEEeccCCCCCChhhHhhh
Q 006752          115 TCLKELDLSRCVKVTDAGMKHL  136 (632)
Q Consensus       115 ~~L~~L~L~~~~~l~~~~~~~l  136 (632)
                      ++|++|+|++|..+++.+...+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            4555555555555555544443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.94  E-value=0.17  Score=29.26  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=17.3

Q ss_pred             CCCccEEEcCCCCCCCchhHHhhh
Q 006752           89 FRYLRSLNVADCRRVTSSALWALT  112 (632)
Q Consensus        89 ~~~L~~L~L~~~~~i~~~~~~~l~  112 (632)
                      |++|++|+|++|..+++.....++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            467788888888777777666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.12  E-value=0.18  Score=28.39  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=8.8

Q ss_pred             CCCcEEEccCCcCcchhHHH
Q 006752          326 ANLRNLNLSNTRFSSAGVGI  345 (632)
Q Consensus       326 ~~L~~L~l~~n~l~~~~~~~  345 (632)
                      ++|++|++++|++++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            44555555555555444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.89  E-value=0.023  Score=52.08  Aligned_cols=64  Identities=11%  Similarity=0.078  Sum_probs=38.4

Q ss_pred             hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      |+-++.|..||++.|++.- .|..+++...+..+++..|..+. .|.++...+.++++++.+|.+.
T Consensus        61 ~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccCcch
Confidence            3444556666666666554 45566666666666666666655 4556666666666666666544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.30  E-value=0.22  Score=28.72  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=6.8

Q ss_pred             cccccccccccCCCc
Q 006752          475 ELIHLSLRNASLTDV  489 (632)
Q Consensus       475 ~L~~L~Ls~n~l~~~  489 (632)
                      +|+.|+|++|+|+.+
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00369        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            344444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.30  E-value=0.22  Score=28.72  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=6.8

Q ss_pred             cccccccccccCCCc
Q 006752          475 ELIHLSLRNASLTDV  489 (632)
Q Consensus       475 ~L~~L~Ls~n~l~~~  489 (632)
                      +|+.|+|++|+|+.+
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00370        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            344444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.83  E-value=0.033  Score=51.10  Aligned_cols=87  Identities=11%  Similarity=0.075  Sum_probs=76.1

Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCc
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  524 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L  524 (632)
                      .+......+.||++.|++-. .-..|+.++.|..|+++.|.+.- .|..+.....+..+++..|..+.. |.++...+.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhhC-CccccccCCc
Confidence            45666788999999998876 34557778999999999999987 788999999999999999999885 8999999999


Q ss_pred             ceEecCCCcc
Q 006752          525 KLLDLHGGWL  534 (632)
Q Consensus       525 ~~L~l~~N~l  534 (632)
                      ++++.-+|+|
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            9999999997

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.03  E-value=0.37  Score=27.70  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=16.5

Q ss_pred             CCCCcEEeecCceeccCCCCCC
Q 006752          497 LSKLTNLSIRDAVLTNSGLGSF  518 (632)
Q Consensus       497 l~~L~~L~ls~N~l~~~~~~~l  518 (632)
                      +++|+.|+|++|+|+.+.+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888888888888755554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.03  E-value=0.37  Score=27.70  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=16.5

Q ss_pred             CCCCcEEeecCceeccCCCCCC
Q 006752          497 LSKLTNLSIRDAVLTNSGLGSF  518 (632)
Q Consensus       497 l~~L~~L~ls~N~l~~~~~~~l  518 (632)
                      +++|+.|+|++|+|+.+.+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888888888888755554

>TIGR00864 PCC polycystin cation channel protein

Probab=87.01  E-value=0.28  Score=60.77  Aligned_cols=45  Identities=13%  Similarity=0.141  Sum_probs=40.2

Q ss_pred             eecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          504 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       504 ~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|+|.+.++.++..
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~   45 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE   45 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence            688999999888888899999999999999999999988887764

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=85.79  E-value=3.8  Score=42.10  Aligned_cols=106  Identities=24%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             CCCcCEEeccCCCCCChhhHhhhcC--CCCccEEEccCCCCCHhHHHHhc---CCCCCCEEEcCCCCCChHHHHhc---c
Q 006752          114 MTCLKELDLSRCVKVTDAGMKHLLS--ISTLEKLWLSETGLTADGIALLS---SLQNLSVLDLGGLPVTDLVLRSL---Q  185 (632)
Q Consensus       114 l~~L~~L~L~~~~~l~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~l---~  185 (632)
                      -+.+++++++.| .+.+..+..+..  .+    +.+..|..+......+.   .-..+.+++++.|...+.+|..+   .
T Consensus       164 npr~r~~dls~n-pi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a  238 (553)
T KOG4242|consen  164 NPRARQHDLSPN-PIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKA  238 (553)
T ss_pred             cchhhhhccCCC-cccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhh
Confidence            345677777776 344443333331  12    45555555544332222   12346677777776655555433   2


Q ss_pred             CCCCccEEEecCCCCCc---hhhHhhcCCCCCcEEEccCCCC
Q 006752          186 VLTKLEYLDLWGSQVSN---RGAAVLKMFPRLSFLNLAWTGV  224 (632)
Q Consensus       186 ~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l  224 (632)
                      .-..++.++.+...+.-   ..+-..+.-+++...+++.|..
T Consensus       239 ~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  239 GTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             hhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence            22345666666554431   1222334445666666666543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.42  E-value=1.9  Score=25.39  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=13.1

Q ss_pred             CCCcEEEccCCCCChHHHHHHh
Q 006752          351 PNLEILSLSGTQIDDYAISYMS  372 (632)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l~  372 (632)
                      ++|++|+|++|.+.+.....++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            3566666666666655554443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.37  E-value=1.9  Score=25.34  Aligned_cols=20  Identities=40%  Similarity=0.695  Sum_probs=9.4

Q ss_pred             CCcEEEccCCcCcchhHHHH
Q 006752          327 NLRNLNLSNTRFSSAGVGIL  346 (632)
Q Consensus       327 ~L~~L~l~~n~l~~~~~~~~  346 (632)
                      +|++|+|++|.+.+.....+
T Consensus         3 ~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        3 SLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             ccCEEECCCCCCCHHHHHHH
Confidence            44555555555544444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	632
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-05
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		1e-04

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 159/348 (45%), Gaps = 77/348 (22%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
           DG+  L+   NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     
Sbjct: 57  DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+  N   T +  L N+++L  L LS+ TI  I             +L+G T + +    
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                  LSF   S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  
Sbjct: 156 -------LSF---SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYP 392
           +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I  + P
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452
                   S    +    L  +    +    S LAG              LTAL NL   
Sbjct: 257 -------LSGLTKLTELKLGANQISNI----SPLAG--------------LTALTNLE-- 289
Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
               L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 290 ----LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 329

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 159/348 (45%), Gaps = 77/348 (22%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
           DG+  L+   NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     
Sbjct: 57  DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+  N   T +  L N+++L  L LS+ TI  I             +L+G T + +    
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                  LSF   S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  
Sbjct: 156 -------LSF---SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYP 392
           +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I  + P
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452
                   S    +    L  +    +    S LAG              LTAL NL   
Sbjct: 257 -------LSGLTKLTELKLGANQISNI----SPLAG--------------LTALTNLE-- 289
Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
               L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 290 ----LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 329

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 158/356 (44%), Gaps = 79/356 (22%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 30  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 87
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 88  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 140
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 141 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 197
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 198 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 251
Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT 444
             I  + P        S    +    L  +    +    S LAG              LT
Sbjct: 252 NQISNLAP-------LSGLTKLTELKLGANQISNI----SPLAG--------------LT 286
Query: 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
           AL NL       L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 287 ALTNLE------LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 332

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 158/348 (45%), Gaps = 77/348 (22%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
           DG+  L+   NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     
Sbjct: 57  DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+  N   T +  L N+++L  L LS+ TI  I             +L+G T + +    
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                     L+ S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  
Sbjct: 156 ----------LNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYP 392
           +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I  + P
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452
                   S    +    L  +    +    S LAG              LTAL NL   
Sbjct: 257 -------LSGLTKLTELKLGANQISNI----SPLAG--------------LTALTNLE-- 289
Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
               L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 290 ----LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 329

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 158/356 (44%), Gaps = 79/356 (22%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 31  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 88
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 89  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 141
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 198
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 199 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252
Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT 444
             I  + P        S    +    L  +    +    S LAG              LT
Sbjct: 253 NQISNLAP-------LSGLTKLTELKLGANQISNI----SPLAG--------------LT 287
Query: 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
           AL NL       L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 288 ALTNLE------LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 333

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 158/356 (44%), Gaps = 79/356 (22%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 26  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 83
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 84  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 193
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 194 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 247
Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT 444
             I  + P        S    +    L  +    +    S LAG              LT
Sbjct: 248 NQISNLAP-------LSGLTKLTELKLGANQISNI----SPLAG--------------LT 282
Query: 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
           AL NL       L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 283 ALTNLE------LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 158/356 (44%), Gaps = 79/356 (22%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 26  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 83
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 84  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 193
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 194 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 247
Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT 444
             I  + P        S    +    L  +    +    S LAG              LT
Sbjct: 248 NQISNLAP-------LSGLTKLTELKLGANQISNI----SPLAG--------------LT 282
Query: 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
           AL NL       L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 283 ALTNLE------LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 156 GIALLSSLQNLSVLDLG--GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 213
           G   L +L+NL  LDL    +  +D     L+ L+ L+ L+L  ++  +      K  P+
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 214 LSFLNLAWTGV------TKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTF 266
           L  L+LA+T +      +   N+  L+ LNLS+  +D   E   +  P L  ++L G  F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 267 -------INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
                   N  +    +E  +LSF D+S  S+ +  F T +K + H+DLS + +   S+E
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS--SIDQHAF-TSLKMMNHVDLSHNRLTSSSIE 518
Query: 320 MVA 322
            ++
Sbjct: 519 ALS 521

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	632
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-16
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	8e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  121 bits (304), Expect = 4e-29
 Identities = 79/575 (13%), Positives = 169/575 (29%), Gaps = 85/575 (14%)

Query: 23  SVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEW 82
            +    R+  ++        D L R      L    L    +     +           W
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRF--PNLRSLKLKGKPRAAMFNLIPENWGGYVTPW 103

Query: 83  MAYLGA-FRYLRSLNVADCRRVTSSALWALTGMTC--LKELDLSRCVKVTDAGMKHLLSI 139
           +  +    R L+S++      V+   L  L       L+ L L +C   T  G+  +++ 
Sbjct: 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162

Query: 140 -STLEKLWLSETGLTADGIALLS-------SLQNLSVLDLGGLPVTDLVLRSL-QVLTKL 190
              ++ L + E+  +      L        SL+ L+        ++   L ++ +    L
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222

Query: 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNL--------AWTGVTKLPNISSLECLNLSNCT 242
             + +   ++        K    L                    L     L  L LS   
Sbjct: 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA 302
            + +       A + K+ L       E                           + +   
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETE----------------------DHCTLIQKCPN 319

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-----------TRFSSAGVGILAGHLP 351
           LE L+  +  IGD  +E++A     L+ L +                S  G+  LA    
Sbjct: 320 LEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 352 NLEILSLSGTQIDDYAISYMS----MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407
            LE +++  + I + ++  +      +   + + +   +     P           C  +
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 467
                 +     +                TDL LS    Q   ++  + L     SD  L
Sbjct: 439 R-RFAFYLRQGGL----------------TDLGLSYIG-QYSPNVRWMLLGYVGESDEGL 480

Query: 468 FPLSTF-KELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLGSF---KPPR 522
              S     L  L +R    ++ ++    + L  L  L ++    + +G       +P  
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540

Query: 523 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELS 557
           +++L+       + +   ++  +    I  ++ L+
Sbjct: 541 NIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLA 575

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  116 bits (292), Expect = 2e-27
 Identities = 98/560 (17%), Positives = 195/560 (34%), Gaps = 83/560 (14%)

Query: 18  CQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENS 77
           C+S   +++W R++  +    A    +++R     ++    L          +   G   
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRF--PKVRSVELKGKPHFADFNLVPDGWGG 91

Query: 78  VDAEWMAYLGA-FRYLRSLNVADCRRVTSSALWAL-TGMTCLKELDLSRCVKVTDAGMKH 135
               W+  + + + +L  + +     VT   L  +       K L LS C   +  G+  
Sbjct: 92  YVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150

Query: 136 LLSI-STLEKLWLSETGLTADGIALLSSL----QNLSVLDLGGLP--VTDLVLRSL-QVL 187
           + +    L++L L E+ +       LS       +L  L++  L   V+   L  L    
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSIL 247
             L+ L L  +    + A +L+  P+L  L          P++ S   + LS C     L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFCFLTQMKALEHL 306
            G  +         A    +    + L   T+L LS+  V +  L +   L Q   L+ L
Sbjct: 271 SGFWD------AVPAYLPAVYSVCSRL---TTLNLSYATVQSYDLVK--LLCQCPKLQRL 319

Query: 307 DLSSSMIGDDSVEMVACVGANLRNLNLS---------NTRFSSAGVGILAGHLPNLEILS 357
            +    I D  +E++A    +LR L +          N   +  G+  ++   P LE + 
Sbjct: 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378

Query: 358 LSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAY 416
               Q+ + A+  ++   P++    +   +                              
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFRLCIIE------------------------------ 408

Query: 417 GYVIFPSSVLAGFIQQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLSTF-K 474
                                D  +   A+ ++   L RL+L    ++D     + T+ K
Sbjct: 409 ---------PKAPDYLTLEPLD--IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456

Query: 475 ELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLGS-FKPPRSLKLLDLHGG 532
           ++  LS+  A  +D+ +H + S    L  L IRD    +  L +      +++ L +   
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

Query: 533 WLLTEDAILQFCKMHPRIEV 552
             ++  A     +  P++ V
Sbjct: 517 S-VSFGACKLLGQKMPKLNV 535

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 77/490 (15%), Positives = 153/490 (31%), Gaps = 84/490 (17%)

Query: 43  DSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGA-FRYLRSLNVADCR 101
           D  L  + +    F +         + + L        + +A + A  R L+ L++ +  
Sbjct: 119 DDCLELIAKS---FKNF--------KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167

Query: 102 --RVTSSALWALT-GMTCLKELDLSRC-VKVTDAGMKHLLSIST-LEKLWLSETGLTADG 156
              V+   L       T L  L++S    +V+ + ++ L++    L+ L L+        
Sbjct: 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 157 IALLSSLQNLSVLDLGGLP------VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKM 210
             LL     L  L  GG        V   +  +L    +L  L  +   V     AV  +
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 211 FPRLSFLNLAWTGVTK------LPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAG 263
             RL+ LNL++  V        L     L+ L + +   D+ LE   +    L ++ +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 264 TTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 323
           +                ++  +    S+S  C       LE +      + + ++  +A 
Sbjct: 348 SEPFVME--------PNVALTEQGLVSVSMGC-----PKLESVLYFCRQMTNAALITIAR 394

Query: 324 VGANLRNLNLS----------NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
              N+    L                  G G +  H  +L  LSLSG  + D    Y+  
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453

Query: 374 M-PSLKFIDISNTDI--KGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFI 430
               ++ + ++       GM           + C  +     L          ++LA   
Sbjct: 454 YAKKMEMLSVAFAGDSDLGM-------HHVLSGCDSLRK---LEIRDCPFGDKALLA--- 500

Query: 431 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 490
                             L  +  L +    VS      L      +++ + +      S
Sbjct: 501 --------------NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDS 546

Query: 491 LHQLSSLSKL 500
             +   + ++
Sbjct: 547 RPESCPVERV 556

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 5e-25
 Identities = 92/461 (19%), Positives = 160/461 (34%), Gaps = 48/461 (10%)

Query: 86  LGAFRYLRSLNVADCRRVTS--SALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTL 142
             A   L  L + + +   S    L      T ++ L LS   +  T       L  + L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS- 201
             L LS   L   G    + L  L    L    +  L   SL  L  + YL+L  S    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKIS 260
           +   A L      SF  L             LE LN+ +  I  I          L  +S
Sbjct: 311 SISLASLPKIDDFSFQWL-----------KCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 261 LAG---TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGD 315
           L+    +      E F+ +  S L  L+++ + +S+      + +  LE LDL  + IG 
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 316 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY--MSM 373
           +          N+  + LS  ++           +P+L+ L L    + +   S      
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 374 MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAG-FIQ 431
           + +L  +D+SN +I  +                 +  L  L            L    + 
Sbjct: 479 LRNLTILDLSNNNIANINDD----------MLEGLEKLEILD-----------LQHNNLA 517

Query: 432 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 491
           ++    +    +  L+ L+HL  LNLE     +  +       EL  + L   +L  +  
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 492 HQLSSLSKLTNLSIRDAVLTNSGLGSFKP-PRSLKLLDLHG 531
              ++   L +L+++  ++T+     F P  R+L  LD+  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (260), Expect = 2e-23
 Identities = 82/441 (18%), Positives = 156/441 (35%), Gaps = 58/441 (13%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSLQNLSVLDL 171
            +  D S            L  +     + +  L L+   L     A  +    L+ LD+
Sbjct: 6   HEVADCSHL---------KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 172 GGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--- 228
           G   ++ L     Q L  L+ L+L  +++S            L+ L+L    + K+    
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 229 --NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAG---TTFINEREAFLYIETSLLS 282
                +L  L+LS+  + S   G       L ++ L+           E       S L 
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK--SEELDIFANSSLK 174

Query: 283 FLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMV--ACVGANLRNLNLSNTRF 338
            L++S++ +  F       +  L  L L++  +G    E +       ++RNL+LSN++ 
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 339 SSAGVGILAG-HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMN 397
           S+       G    NL +L LS   ++       + +P L++  +   +I+ ++     +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS----H 290

Query: 398 VFFSAYCFMIVY---NLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLER 454
                +    +    +    +      P                  +   + Q L  LE 
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPK-----------------IDDFSFQWLKCLEH 333

Query: 455 LNLEQTQVSDATLFPLSTFKELIHLSLRN--ASLTDVSLHQLSSL--SKLTNLSIRDAVL 510
           LN+E   +        +    L +LSL N   SL  ++     SL  S L  L++    +
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 511 TNSGLGSFKPPRSLKLLDLHG 531
           +     +F     L++LDL  
Sbjct: 394 SKIESDAFSWLGHLEVLDLGL 414

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (251), Expect = 3e-22
 Identities = 84/482 (17%), Positives = 175/482 (36%), Gaps = 65/482 (13%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEK 144
               + L +L+++    ++S+ L     +  L+EL LS   ++   +    + + S+L+K
Sbjct: 117 FVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV---LTKLEYLDLWGSQVS 201
           L LS   +         ++  L  L L  + +   +   L +    T +  L L  SQ+S
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 202 NRGAAVLK--MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
                      +  L+ L+L++  +  +       +  LE   L    I  +   + +  
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 255 P-LAKISLAG--------TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKAL 303
             +  ++L             + + + F +     L  L++ ++ +        T +  L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 304 EHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           ++L LS+S     ++     V    + L  LNL+  + S       +  L +LE+L L  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLDLGL 414

Query: 361 TQI-DDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGY 418
            +I  +        + ++  I +S      +  +           F +V +L  L     
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN----------SFALVPSLQRLM---- 460

Query: 419 VIFPSSVLAG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 477
                  L    +       ++  S +  Q L +L  L+L    +++     L   ++L 
Sbjct: 461 -------LRRVAL------KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 478 HLSLRNASLTDVSLH--------QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 529
            L L++ +L  +  H         L  LS L  L++         +  FK    LK++DL
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 530 HG 531
             
Sbjct: 568 GL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 1e-21
 Identities = 82/482 (17%), Positives = 161/482 (33%), Gaps = 49/482 (10%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
              +  L SL+V     ++         +  LK L+L    +++    K     + L +L
Sbjct: 45  FTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            L    +           +NL  LDL    ++   L +   L  L+ L L  +++    +
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 206 AVLKMF--PRLSFLNLAWTGVTKLP-----NISSLECLNLSNC----TIDSILEGNENKA 254
             L +F    L  L L+   + +        I  L  L L+N     ++   L       
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 255 PLAKISLAGTTF-INEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSS 311
            +  +SL+ +         FL ++ + L+ LD+S ++L+         +  LE+  L  +
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 312 MIGDDSVEMVAC--------VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
            I       +          +  +    ++S               L  LE L++    I
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDNDI 341

Query: 364 DDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPS 423
                +  + + +LK++ +SN+       + +    F +     ++ L L         S
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET---FVSLAHSPLHILNLTKNKISKIES 398

Query: 424 SVLAGF------------IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 471
              +              I Q        L+    + L ++  + L   +    T    +
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQE-------LTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 472 TFKELIHLSLRNASLTDV--SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 529
               L  L LR  +L +V  S      L  LT L + +  + N      +    L++LDL
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 530 HG 531
             
Sbjct: 512 QH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 61/303 (20%), Positives = 103/303 (33%), Gaps = 29/303 (9%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC---VKVTDAGMKHLLSISTL 142
               + L  LN+ D   +        TG+  LK L LS     ++         L+ S L
Sbjct: 325 FQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV-LRSLQVLTKLEYLDLWGSQVS 201
             L L++  ++       S L +L VLDLG   +   +  +  + L  +  + L  ++  
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 202 NRGAAVLKMFPRLSFLNLAW---TGVTKLPNI----SSLECLNLSNCTIDSI----LEGN 250
                   + P L  L L       V   P+      +L  L+LSN  I +I    LEG 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 251 ENKAPLAKISLAG---TTFINEREAFLYIET----SLLSFLDVSNSSLSRFCF--LTQMK 301
           E    L  + L                 I      S L  L++ ++            + 
Sbjct: 504 EK---LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
            L+ +DL  + +      +      +L++LNL     +S    +      NL  L +   
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 362 QID 364
             D
Sbjct: 620 PFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 64/396 (16%), Positives = 130/396 (32%), Gaps = 88/396 (22%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           +  V D   L +T +      + T +  L+L  +Q+    AA    + +L+ L++ +  +
Sbjct: 5   SHEVADCSHLKLTQV---PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 225 TKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279
           +KL       +  L+ LNL +  +  + +           + A  T              
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDK----------TFAFCT-------------- 97

Query: 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
            L+ L + ++S+ +       + K L  LDLS + +   S ++   V   NL+ L LSN 
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNN 155

Query: 337 RFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQ 395
           +  +     L      +L+ L LS  QI +++      +  L  + ++N  +        
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE-- 213

Query: 396 MNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERL 455
                                                          L        +  L
Sbjct: 214 ----------------------------------------------KLCLELANTSIRNL 227

Query: 456 NLEQTQVS--DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513
           +L  +Q+S    T F    +  L  L L   +L  V     + L +L    +    + + 
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 514 GLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 549
              S     +++ L+L   +     ++    K+   
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 20/181 (11%)

Query: 86  LGAFRYLRSLNVADCR-RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144
                 L+ L +     +   S+      +  L  LDLS    + +     L  +  LE 
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEI 508

Query: 145 LWLSETGLT--------ADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           L L    L            I  L  L +L +L+L      ++ +   + L +L+ +DL 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSN----CTIDSI 246
            + ++   A+V      L  LNL    +T +          +L  L++      CT +SI
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

Query: 247 L 247
            
Sbjct: 629 A 629

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (262), Expect = 5e-24
 Identities = 73/421 (17%), Positives = 167/421 (39%), Gaps = 67/421 (15%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPV 176
           L    +++   +    +    +++   K  L +T +T       + L  ++ L    L +
Sbjct: 3   LGSATITQDTPINQ--IFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGI 58

Query: 177 TDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SL 233
             +    ++ L  L  ++   +Q+++     LK   +L  + +    +  +  ++   +L
Sbjct: 59  KSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNL 114

Query: 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293
             L L N  I  I    +    L                        L+ L++S++++S 
Sbjct: 115 TGLTLFNNQITDI----DPLKNLTN----------------------LNRLELSSNTISD 148

Query: 294 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353
              L+ + +L+ L   + +     +  +      L  L++S+ + S   + +L   L NL
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKPLANL----TTLERLDISSNKVSD--ISVL-AKLTNL 201

Query: 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-F 412
           E L  +  QI D  I+ + ++ +L  + ++   +K +     +             NL  
Sbjct: 202 ESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLASLT------------NLTD 247

Query: 413 LHAYGYVIFPSSVLAGF--IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 470
           L      I   + L+G   + ++    + + +++ L  L  L  L L + Q+ D  + P+
Sbjct: 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPI 305

Query: 471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 530
           S  K L +L+L   +++D+S   +SSL+KL  L   +  +++  + S     ++  L   
Sbjct: 306 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 531 G 531
            
Sbjct: 362 H 362

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (259), Expect = 1e-23
 Identities = 84/462 (18%), Positives = 174/462 (37%), Gaps = 80/462 (17%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L         +   +   + T +  +  L   R   +    +  +  ++ L ++  S   
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQ 79

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           LT   I  L +L  L  + +    + D  +  L  LT L  L L+ +Q+++     LK  
Sbjct: 80  LT--DITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNL 133

Query: 212 PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFI 267
             L+ L L+   ++ +  +S   SL+ L+  N   D   L        L ++ +  +  +
Sbjct: 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT---LERLDI-SSNKV 189

Query: 268 NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV--EMVACVG 325
           ++      +    L  L  +N+ +S    L  +  L+ L L+ + + D      +     
Sbjct: 190 SDISVLAKLTN--LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT---- 243

Query: 326 ANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L+L+N + S+    +     L  L  L L   QI +  IS ++ + +L  ++++ 
Sbjct: 244 -NLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 296

Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS-- 442
             ++ + P   +             NL                         T L L   
Sbjct: 297 NQLEDISPISNLK------------NL-------------------------TYLTLYFN 319

Query: 443 ----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 498
               ++ + +L  L+RL     +VSD  +  L+    +  LS  +  ++D++   L++L+
Sbjct: 320 NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT--PLANLT 375

Query: 499 KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 540
           ++T L + D   TN+ +           +    G L+    I
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 77/403 (19%), Positives = 143/403 (35%), Gaps = 88/403 (21%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
            L  +T L  L L    ++TD  +  L +++ L +L LS   ++   I+ LS L +L  L
Sbjct: 107 PLANLTNLTGLTLFNN-QITD--IDPLKNLTNLNRLELSSNTIS--DISALSGLTSLQQL 161

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
             G        L+ L  LT LE LD+  ++VS+   +VL     L  L      ++ +  
Sbjct: 162 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

Query: 230 IS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
           +    +L+ L+L+   +  I  L    N   L  + LA    I+       +    L+ L
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTN---LTDLDLANNQ-ISNLAPLSGLTK--LTEL 270

Query: 285 DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 344
            +  + +S    L  + AL +L+L+ + + D S  +      NL  L L     S     
Sbjct: 271 KLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLK--NLTYLTLYFNNISD---- 323

Query: 345 ILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
           I     L  L+ L     ++ D  +S ++ + ++ ++   +  I                
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS--------------- 366

Query: 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463
                                                  LT L NL  + +L L     +
Sbjct: 367 --------------------------------------DLTPLANLTRITQLGLNDQAWT 388

Query: 464 DATLFPLSTFKELIHLSL-RNASLTDVSLHQLSSLSKLTNLSI 505
           +    P++    +   +  +N +   ++   +S     T   I
Sbjct: 389 N---APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 5e-19
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 27/305 (8%)

Query: 88  AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147
             + L +LN  +    T S + AL+G+T L++L     V      +K L +++TLE+L +
Sbjct: 129 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDI 184

Query: 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV 207
           S   ++   I++L+ L NL  L      ++D+    L +LT L+ L L G+Q+ + G   
Sbjct: 185 SSNKVS--DISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGT-- 238

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLA 262
           L     L+ L+LA   ++ L  +S    L  L L    I +I  L G      L  + L 
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA---LTNLELN 295

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
               + +      ++   L++L +  +++S    ++ +  L+ L   ++ + D  V  +A
Sbjct: 296 EN-QLEDISPISNLKN--LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
            +  N+  L+  + + S         +L  +  L L+     +  ++Y + +     +  
Sbjct: 351 NL-TNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 383 SNTDI 387
               +
Sbjct: 407 VTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 51/291 (17%), Positives = 104/291 (35%), Gaps = 50/291 (17%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L     L SL   + + ++   +  L  +T L EL L+   ++ D  +  L S++ L  L
Sbjct: 195 LAKLTNLESLIATNNQ-ISD--ITPLGILTNLDELSLNGN-QLKD--IGTLASLTNLTDL 248

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            L+   ++   +A LS L  L+ L LG   ++++    L  LT L  L+L  +Q+ +   
Sbjct: 249 DLANNQIS--NLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--I 302

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKIS 260
           + +     L++L L +  ++ +  +S    L+ L   N  +  +  L    N        
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN-------- 354

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
                               +++L   ++ +S    L  +  +  L L+     +  V  
Sbjct: 355 --------------------INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN- 393

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISY 370
                AN+   N       +           +     ++         +SY
Sbjct: 394 ---YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY 441

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 60/260 (23%)

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
            L S     ++ +++    T +       L  + + D   +        +  L       
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGI 58

Query: 339 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNV 398
            S   G+   +L NL  ++ S  Q+ D  I+ +  +  L  I ++N  I  + P   +  
Sbjct: 59  KSI-DGV--EYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLT- 112

Query: 399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS------LTALQNLNHL 452
                      NL                         T L L       +  L+NL +L
Sbjct: 113 -----------NL-------------------------TGLTLFNNQITDIDPLKNLTNL 136

Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512
            RL L    +SD  +  LS    L  LS  N  +TD+    L++L+ L  L I    +++
Sbjct: 137 NRLELSSNTISD--ISALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKVSD 191

Query: 513 -SGLGSFKPPRSLKLLDLHG 531
            S L       +L+ L    
Sbjct: 192 ISVLAKLT---NLESLIATN 208

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 13/178 (7%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L +L + + +    S +  L     L  L L     ++D  +  + S++ L++L+     
Sbjct: 289 LTNLELNENQLEDISPISNLKN---LTYLTLYFN-NISD--ISPVSSLTKLQRLFFYNNK 342

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           ++   ++ L++L N++ L  G   ++DL    L  LT++  L L     +N         
Sbjct: 343 VS--DVSSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 212 PRLSFL---NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
              + +     A      + +  S    +++        E +   +    I    TTF
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 1e-23
 Identities = 65/400 (16%), Positives = 145/400 (36%), Gaps = 68/400 (17%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPV 176
              L       +    +     ++   +  L +  +T   +     L++++ L + G  V
Sbjct: 2   AATLATLPA-PINQ--IFPDADLAEGIRAVLQKASVT--DVVTQEELESITKLVVAGEKV 56

Query: 177 TDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SL 233
             +  + ++ LT LEYL+L G+Q+++     L    +L+ L +    +T +  +    +L
Sbjct: 57  ASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNL 112

Query: 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293
             L L+   I  I     N   +  ++L     +++      +  + L++L V+ S +  
Sbjct: 113 RELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNM--TGLNYLTVTESKVKD 169

Query: 294 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353
              +  +  L  L L+ + I D S  + +    +L        + +   +  +  ++  L
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDIS-PLASLT--SLHYFTAYVNQITD--ITPV-ANMTRL 223

Query: 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFL 413
             L +   +I D  +S ++ +  L +++I    I  +     +              L  
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLT------------KL-- 267

Query: 414 HAYGYVIFPSSVLAGFIQQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATL 467
                                    L +       ++ L NL+ L  L L   Q+ +  +
Sbjct: 268 -----------------------KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 468 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507
             +     L  L L    +TD+    L+SLSK+ +    +
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.6 bits (244), Expect = 3e-22
 Identities = 72/400 (18%), Positives = 138/400 (34%), Gaps = 91/400 (22%)

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
              L      +    I   + L       L    VTD+V  + + L  +  L + G +V+
Sbjct: 2   AATLATLPAPIN--QIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAK 258
           +     ++    L +LNL    +T +  +S    L  L +    I  I       + L  
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-------SALQN 108

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV 318
           +                   + L  L ++  ++S    L  +  +  L+L ++    D  
Sbjct: 109 L-------------------TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 319 EMVACVGANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
            +       L  L ++ ++       +    +L +L  LSL+  QI+D  IS ++ + SL
Sbjct: 150 PLSNMT--GLNYLTVTESKVKD----VTPIANLTDLYSLSLNYNQIED--ISPLASLTSL 201

Query: 378 KFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET 437
            +       I  + P   M              L                          
Sbjct: 202 HYFTAYVNQITDITPVANMT------------RL-------------------------N 224

Query: 438 DLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 491
            L +       L+ L NL+ L  L +   Q+SD  +  +    +L  L++ +  ++D+S 
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDIS- 281

Query: 492 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
             L++LS+L +L + +  L N  +       +L  L L  
Sbjct: 282 -VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.4 bits (233), Expect = 8e-21
 Identities = 65/320 (20%), Positives = 137/320 (42%), Gaps = 32/320 (10%)

Query: 85  YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144
                  +  L VA  + V S  +  +  +T L+ L+L+   ++TD  +  L ++  L  
Sbjct: 39  TQEELESITKLVVAGEK-VAS--IQGIEYLTNLEYLNLNGN-QITD--ISPLSNLVKLTN 92

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
           L++    +T   I+ L +L NL  L L    ++D+    L  LTK+  L+L  +      
Sbjct: 93  LYIGTNKIT--DISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNL-SD 147

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKI 259
            + L     L++L +  + V  +  I+    L  L+L+   I+ I  L    +   L   
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS---LHYF 204

Query: 260 SLAGTTFINEREAFLYIET-SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD-DS 317
           +       N+      +   + L+ L + N+ ++    L  +  L  L++ ++ I D ++
Sbjct: 205 TAYV----NQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA 260

Query: 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
           V+ +      L+ LN+ + + S   + +L  +L  L  L L+  Q+ +  +  +  + +L
Sbjct: 261 VKDLT----KLKMLNVGSNQISD--ISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 378 KFIDISNTDIKGMYPSGQMN 397
             + +S   I  + P   ++
Sbjct: 314 TTLFLSQNHITDIRPLASLS 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.6 bits (231), Expect = 1e-20
 Identities = 64/308 (20%), Positives = 131/308 (42%), Gaps = 25/308 (8%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           +    YL +L   +      + +  L+ +  L  L +    K+TD  +  L +++ L +L
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITD--ISALQNLTNLREL 115

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
           +L+E  ++   I+ L++L  +  L+LG        L  L  +T L YL +  S+V +   
Sbjct: 116 YLNEDNIS--DISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD--V 170

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKIS 260
             +     L  L+L +  +  +  ++   SL         I  I  +        L  + 
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTR---LNSLK 227

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
           +     I +         S L++L++  + +S    +  +  L+ L++ S+ I D  + +
Sbjct: 228 IGNN-KITDLSPL--ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD--ISV 282

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380
           +  + + L +L L+N +  +  + ++ G L NL  L LS   I D  I  ++ +  +   
Sbjct: 283 LNNL-SQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITD--IRPLASLSKMDSA 338

Query: 381 DISNTDIK 388
           D +N  IK
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 68/211 (32%)

Query: 328 LRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
              L       +     I     L       L    + D  +     + S+  + ++   
Sbjct: 2   AATLATLPAPINQ----IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEK 55

Query: 387 IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTAL 446
           +                                                      S+  +
Sbjct: 56  VA-----------------------------------------------------SIQGI 62

Query: 447 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 506
           + L +LE LNL   Q++D  + PLS   +L +L +    +TD+S   L +L+ L  L + 
Sbjct: 63  EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118

Query: 507 DAVLTN-SGLGSFKPPRSLKLLDLHGGWLLT 536
           +  +++ S L +      +  L+L     L+
Sbjct: 119 EDNISDISPLANLT---KMYSLNLGANHNLS 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (252), Expect = 2e-22
 Identities = 82/483 (16%), Positives = 154/483 (31%), Gaps = 88/483 (18%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV--KVTDAGMKHLLSIS--- 140
           L   + L SL +     ++S  L        LK LD        ++   M  L   +   
Sbjct: 125 LHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 141 -------------------TLEKLWLSETGLTADGIALLS--SLQNLSVLDLGGLPVTDL 179
                                + L    T         L   ++Q+L +     +   D+
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 180 VLRSLQVLTK--LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSL 233
                + L +  +E ++L      N  +     F  L  L+L  T +++LP     +S+L
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303

Query: 234 ECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292
           + L LS    +++ + +  N   L  +S+ G T   E           L  LD+S+  + 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 293 RF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 348
                   L  +  L+ L+LS +       E        L  L+L+ TR           
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQ 422

Query: 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV 408
           +L  L++L+LS + +D  +      +P+L+ +++                          
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI---------------- 466

Query: 409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 468
                                               +LQ L  LE L L    +S     
Sbjct: 467 --------------------------------QKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 469 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 528
             ++ K + H+ L +  LT  S+  LS L  +  L++    ++             + ++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTIN 553

Query: 529 LHG 531
           L  
Sbjct: 554 LRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 89/468 (19%), Positives = 160/468 (34%), Gaps = 57/468 (12%)

Query: 86  LGAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
                 L  L++  C+   +      +      L  L L+    +       L     L+
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHR---LDTLVLTAN-PLIFMAETALSGPKALK 108

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR 203
            L+  +TG+++     L + + L  L LG   ++ + L       KL+ LD       N 
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN----NA 164

Query: 204 GAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAG 263
               +    +    +L           ++L  LNL+   I  I  G  + A    ++  G
Sbjct: 165 ----IHYLSKEDMSSL--------QQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 264 ---TTFINEREAFLYIET-SLLSFLDVSNSSLSRFCFLTQMK-ALEHLDLSSSMIGDDSV 318
                 I +      I++  L +F D+ +  +S   F    + ++E ++L      + S 
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378
               C  + L+ L+L+ T  S    G+    L  L+ L LS  + ++      S  PSL 
Sbjct: 272 NTFHCF-SGLQELDLTATHLSELPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAET 437
            + I     +    +G         C   + NL  L      I  S      ++ +    
Sbjct: 329 HLSIKGNTKRLELGTG---------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 438 DLVLS--------LTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASL 486
            L LS          A +    LE L+L  T++        S F     L  L+L ++ L
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK--VKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 487 TDVSLHQLSSLSKLTNLSIRD---AVLTNSGLGSFKPPRSLKLLDLHG 531
              S      L  L +L+++             S +    L++L L  
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 6e-15
 Identities = 71/414 (17%), Positives = 136/414 (32%), Gaps = 59/414 (14%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           ++ E L  S   L        S L NL+ LDL    +  +   + Q   +L+ L L  + 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
           +       L     L  L    TG++ +      N  +LE L L +  I SI        
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 255 P-LAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSS 311
             L  +           +E    ++ +    L+++ + ++            + L+   +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 312 MIGDDSVEMVA-CVGANLRNLNLSNTRFSSAGVGILAG-HLPNLEILSLSGTQIDDYAIS 369
                  + +      +L      +         +  G    ++E ++L      + + +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF 429
                  L+ +D++ T +  + PSG                         +   S L   
Sbjct: 273 TFHCFSGLQELDLTATHLSEL-PSG-------------------------LVGLSTL--- 303

Query: 430 IQQVGAETDLVLS---LT-----ALQNLNHLERLNLE----QTQVSDATLFPLSTFKELI 477
                    LVLS          +  N   L  L+++    + ++    L  L   +EL 
Sbjct: 304 -------KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL- 355

Query: 478 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            LS  +   +D    QL +LS L +L++      +    +FK    L+LLDL  
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 53/279 (18%), Positives = 99/279 (35%), Gaps = 40/279 (14%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSR-------CVKVTDAGMKHLLSI----- 139
           L  L++    +        L  +  L+ELDLS        C  +    + HL S+     
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 140 -------------STLEKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
                          LE L L+ T L   D  +   +L  L VL+L    +     +   
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 186 VLTKLEYLDLWG---SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLN 237
            L  L++L+L G    + + +    L+   RL  L L++  ++ +      ++  +  ++
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297
           LS+  + S      +      ++LA         + L I +     +++  + L   C  
Sbjct: 507 LSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQ-QRTINLRQNPLDCTCSN 565

Query: 298 TQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSN 335
                LE    +   + D   E   C     LR + LS+
Sbjct: 566 IYF--LEWYKENMQKLED--TEDTLCENPPLLRGVRLSD 600

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  100 bits (250), Expect = 5e-22
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 34/278 (12%)

Query: 117 LKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL 174
           ++ LDLS      +     + L     L+ L L+   +          L NL VL+L   
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKD---LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLE 234
            + +L   +   L K+ Y+DL  + ++       K   +L  L+L    +T +  I S+ 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 294
            + LS   + ++                           + +  +L+   +    +L   
Sbjct: 385 DIFLSGNKLVTL-------------------------PKINLTANLIHLSENRLENLDIL 419

Query: 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG----HL 350
            FL ++  L+ L L+ +     S +       +L  L L       A    L       L
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388
            +L++L L+   ++       S + +L+ + +++  + 
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.3 bits (245), Expect = 2e-21
 Identities = 88/467 (18%), Positives = 164/467 (35%), Gaps = 42/467 (8%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
                 L+ L +       +    A   +  L+ LDL    K+          +  L +L
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFEL 102

Query: 146 WLSETGLTADGI--ALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQVSN 202
            L   GL+   +      +L+ L+ LDL    +  L L  S   L  L+ +D   +Q+  
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 203 RGAAVLK--MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAK 258
                L+      LSF +LA   +    ++   +C+N     +  IL+  GN     +  
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

Query: 259 ISLAGTTFINEREAFL--YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD 316
                 +        L  +I  +   F ++ +   + F  L +  ++ HLDLS   +   
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVFSL 281

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376
           +  +   +  +L+ LNL+  + +        G L NL++L+LS   + +   S    +P 
Sbjct: 282 NSRVFETLK-DLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 377 LKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGA 435
           + +ID+    I                 F  +  L  L      +         I  + +
Sbjct: 340 VAYIDLQKNHIA----------IIQDQTFKFLEKLQTLDLRDNAL-------TTIHFIPS 382

Query: 436 ETDLVLSLTALQNLNHL----ERLNLEQTQVSDATLFP-LSTFKELIHLSLRNASLTDVS 490
             D+ LS   L  L  +      ++L + ++ +  +   L     L  L L     +  S
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 491 LHQL-SSLSKLTNL-----SIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
             Q  S    L  L      ++ A  T      F+    L++L L+ 
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 65/404 (16%), Positives = 124/404 (30%), Gaps = 66/404 (16%)

Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWG 197
           ++T E+L LS   +     +    L+ L +L+LG       +   + + L  L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTK-------LPNISSLECLNLSNCTIDSILEGN 250
           S++        +    L  L L + G++          N+ +L  L+LS   I S+    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 251 E--NKAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307
                  L  I  +              ++   LSF  ++ +SL     +   K +    
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
                               L  L++S   ++    G  +  +   +  SL         
Sbjct: 203 NMV-----------------LEILDVSGNGWTVDITGNFSNAISKSQAFSLIL------- 238

Query: 368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLA 427
                    +        +IK    +      F+      V +L L              
Sbjct: 239 ------AHHIMGAGFGFHNIKDPDQN-----TFAGLARSSVRHLDLSHG----------- 276

Query: 428 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487
            F+  + +           + L  L+ LNL   +++            L  L+L    L 
Sbjct: 277 -FVFSLNSRV--------FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
           ++       L K+  + ++   +      +FK    L+ LDL  
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.1 bits (208), Expect = 5e-17
 Identities = 68/470 (14%), Positives = 146/470 (31%), Gaps = 89/470 (18%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSET 150
           L  L+++  +  +     +   +  LK +D S   + +        L   TL    L+  
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 151 GLT----ADGIALLSSLQN--LSVLDLGGLPVTDLVLR------------SLQVLTKLEY 192
            L      D    ++  +N  L +LD+ G   T  +              SL +   +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 193 LDLWGSQVSNRGAAVLKMFPRLS--FLNLAWTGVTKLP-----NISSLECLNLSNCTIDS 245
                  + +          R S   L+L+   V  L       +  L+ LNL+   I+ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 246 ILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKA 302
           I +        L  ++L+    + E  +  +     ++++D+  + ++         ++ 
Sbjct: 305 IADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
           L+ LDL  + +             ++ ++ LS  +  +     L        ++ LS  +
Sbjct: 364 LQTLDLRDNALTTI------HFIPSIPDIFLSGNKLVT-----LPKINLTANLIHLSENR 412

Query: 363 IDDYAISYMSM-MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421
           +++  I Y  + +P L+ + ++                 S                    
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQ----TPS-------------------- 448

Query: 422 PSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 481
                                  +L+ L  L    L+    ++           L  L L
Sbjct: 449 --------------------ENPSLEQLF-LGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 482 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            +  L  +     S L+ L  LS+    LT           +L++LD+  
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 62/452 (13%), Positives = 143/452 (31%), Gaps = 82/452 (18%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           +   +  L+ L+L           +   ++  L  L L  + +          L +L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 170 DLGGLPVTDLVL--RSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTK 226
            L    ++D VL     + L  L  LDL  +Q+ +            L  ++ +   +  
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 227 LPNIS-------SLECLNLSNCTIDSILEGNENKA--PLAKISLAGTTFINEREAFLYIE 277
           +           +L   +L+  ++ S +  +  K   P   + L     ++       ++
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL---EILDVSGNGWTVD 219

Query: 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC-VGANLRNLNLSNT 336
            +      +S S             +         I D      A    +++R+L+LS+ 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHH---IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQM 396
              S    +    L +L++L+L+  +I+  A      + +L+ +++S   +  +Y S   
Sbjct: 277 FVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS--- 332

Query: 397 NVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLN 456
                                                               L  +  ++
Sbjct: 333 ------------------------------------------------NFYGLPKVAYID 344

Query: 457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 516
           L++  ++          ++L  L LR+ +LT   +H + S+  +         L+ + L 
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT--IHFIPSIPDIF--------LSGNKLV 394

Query: 517 SFKP-PRSLKLLDLHGGWLLTEDAILQFCKMH 547
           +      +  L+ L    L   D +    ++ 
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVP 426

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 52/350 (14%), Positives = 110/350 (31%), Gaps = 49/350 (14%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           A  G+  L+ L+LS    + +    +   +  +  + L +  +          L+ L  L
Sbjct: 309 AFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 170 DLGGLPVTDL-VLRSLQVL-------TKLEYLDLWGSQV--------SNRGAAVLKMFPR 213
           DL    +T +  + S+  +         L  ++L  + +        +      L   P 
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 214 LSFLNLAWTGVTKLPNI------SSLECLNLSNCTIDSILEGNENKAPLAKIS------L 261
           L  L L     +            SLE L L    +    E          +S      L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 321
               ++N     ++   + L  L ++++ L+          LE LD+S + +    +   
Sbjct: 488 NHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL----LAPN 542

Query: 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP------ 375
             V  +L  L++++ +F              +  L+ +   I         + P      
Sbjct: 543 PDVFVSLSVLDITHNKFICE-----CELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597

Query: 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYC----FMIVYNLFLHAYGYVIF 421
           SL  +     D + +  S + ++F         F++         G+   
Sbjct: 598 SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFI 647

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.1 bits (245), Expect = 6e-22
 Identities = 93/504 (18%), Positives = 149/504 (29%), Gaps = 127/504 (25%)

Query: 70  IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMTCLKELDLSRC 125
           ++++ E   DA W   L   +  + + + DC  +T +       AL     L EL+L   
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN 66

Query: 126 VKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSL----QNLSVLDLGGLPV 176
            ++ D G+  +L         ++KL L    LT  G  +LSS       L  L L    +
Sbjct: 67  -ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

Query: 177 TDLVLRSL-----QVLTKLEYLDLWGSQVSNRG----AAVLKMFPRLSFLNLAWT----- 222
            D  L+ L         +LE L L    +S       A+VL+  P    L ++       
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 223 GVTKL-----PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIE 277
           GV  L      +   LE L L +C                 ++      +      +   
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESC----------------GVTSDNCRDL----CGIVAS 225

Query: 278 TSLLSFLDVSNSSLSRFC-------FLTQMKALEHLDLSSSMIGDDSVEMVA---CVGAN 327
            + L  L + ++ L            L     L  L +    I       +        +
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 328 LRNLNLSNTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKF 379
           L+ L+L+       G  +L   L      LE L +          S+ S +      L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 380 IDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL 439
           + ISN  ++                                             G     
Sbjct: 346 LQISNNRLED-------------------------------------------AGVRE-- 360

Query: 440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF----KELIHLSLRNASLTDVSLHQLS 495
            L     Q  + L  L L    VSD++   L+        L  L L N  L D  + QL 
Sbjct: 361 -LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 496 SL-----SKLTNLSIRDAVLTNSG 514
                    L  L + D   +   
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEM 443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.7 bits (231), Expect = 3e-20
 Identities = 81/456 (17%), Positives = 152/456 (33%), Gaps = 94/456 (20%)

Query: 117 LKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDL 171
           ++ LD+    +++DA    LL  +   + + L + GLT          L     L+ L+L
Sbjct: 5   IQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 172 GGLPVTDLVLRSL-----QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226
               + D+ +  +         K++ L L    ++  G  VL                + 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL---------------SST 108

Query: 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 286
           L  + +L+ L+LS+  +     G+     L +  L     +         E   L +  +
Sbjct: 109 LRTLPTLQELHLSDNLL-----GDAGLQLLCEGLLDPQCRL---------EKLQLEYCSL 154

Query: 287 SNSSLSRFCF-LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSA 341
           S +S       L      + L +S++ I +  V ++          L  L L +   +S 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

Query: 342 GVGILAGHL---PNLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGMYPS 393
               L G +    +L  L+L   ++ D  ++ +          L+ + I    I      
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT----- 269

Query: 394 GQMNVFFSAYCFMIVYN-----LFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQN 448
                     C ++        L L                  ++G E   +L  T L+ 
Sbjct: 270 ---AKGCGDLCRVLRAKESLKELSLAGN---------------ELGDEGARLLCETLLEP 311

Query: 449 LNHLERLNLEQTQVSDATLFPLS----TFKELIHLSLRNASLTDVSLHQLS-----SLSK 499
              LE L ++    + A     S      + L+ L + N  L D  + +L        S 
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 500 LTNLSIRDAVLTNSGLGSF----KPPRSLKLLDLHG 531
           L  L + D  +++S   S         SL+ LDL  
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 7e-19
 Identities = 79/499 (15%), Positives = 154/499 (30%), Gaps = 126/499 (25%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWL 147
           ++SL++       +     L  +   + + L  C  +T+A  K + S       L +L L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNL 63

Query: 148 SETGLTADGIALLSSL-----QNLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGS 198
               L   G+  +          +  L L    +T     ++  +L+ L  L+ L L  +
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 199 QVSNRGA-----AVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTID 244
            + + G       +L    RL  L L +  ++          L      + L +SN    
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN--- 180

Query: 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC------FLT 298
                         I+ AG   + +    L      L  L + +  ++          + 
Sbjct: 181 -------------DINEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 299 QMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSAGVGILA---GHLP 351
              +L  L L S+ +GD  +  +        + LR L +     ++ G G L        
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 352 NLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM 406
           +L+ LSL+G ++ D     +          L+ + + +                      
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF------------------- 325

Query: 407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 466
                                       A      S + L     L  L +   ++ DA 
Sbjct: 326 ---------------------------TAACCSHFS-SVLAQNRFLLELQISNNRLEDAG 357

Query: 467 LFPLSTF-----KELIHLSLRNASLTDVSLHQLSSL----SKLTNLSIRDAVLTNSGLGS 517
           +  L          L  L L +  ++D S   L++       L  L + +  L ++G+  
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417

Query: 518 F-----KPPRSLKLLDLHG 531
                 +P   L+ L L+ 
Sbjct: 418 LVESVRQPGCLLEQLVLYD 436

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.8 bits (200), Expect = 3e-16
 Identities = 62/284 (21%), Positives = 96/284 (33%), Gaps = 80/284 (28%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSL- 163
            +     L+EL L    K+ D GM  L        S L  LW+ E G+TA G   L  + 
Sbjct: 222 IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 164 ---QNLSVLDLGGLPVTDLVLRSL-----QVLTKLEYLDLWGSQVSNRG----AAVLKMF 211
              ++L  L L G  + D   R L     +   +LE L +     +       ++VL   
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 212 PRLSFLNLAW-----TGVTKL------PNISSLECLNLSNCTIDSILEGNENKAPLAKIS 260
             L  L ++       GV +L      P  S L  L L++C                 +S
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPG-SVLRVLWLADC----------------DVS 383

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV-- 318
            +  + +                             L    +L  LDLS++ +GD  +  
Sbjct: 384 DSSCSSLAA--------------------------TLLANHSLRELDLSNNCLGDAGILQ 417

Query: 319 --EMVACVGANLRNLNLSNTRFSSAGVGILAGHL---PNLEILS 357
             E V   G  L  L L +  +S      L       P+L ++S
Sbjct: 418 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 24/149 (16%)

Query: 92  LRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHL-----LSISTL 142
           L SL V  C   T++     + +      L EL +S   ++ DAG++ L        S L
Sbjct: 315 LESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVL 372

Query: 143 EKLWLSETGLTADGIALLSSL----QNLSVLDLGGLPVTDLVLRSL-----QVLTKLEYL 193
             LWL++  ++    + L++      +L  LDL    + D  +  L     Q    LE L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 194 DLWGSQVSNRG----AAVLKMFPRLSFLN 218
            L+    S        A+ K  P L  ++
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 40/225 (17%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM----PSLKFIDI 382
           ++++L++     S A    L   L   +++ L    + +     +S      P+L  +++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 383 SNTDIKGMYPSGQMNVFFSA--YCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV 440
            + ++      G ++            +  L L                   +      V
Sbjct: 64  RSNELG---DVG-VHCVLQGLQTPSCKIQKLSLQN---------------CCLTGAGCGV 104

Query: 441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE-----LIHLSLRNASLTDVSLHQLS 495
           LS + L+ L  L+ L+L    + DA L  L          L  L L   SL+  S   L+
Sbjct: 105 LS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 496 SL----SKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHG 531
           S+         L++ +  +  +G+          P  L+ L L  
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 84/470 (17%), Positives = 154/470 (32%), Gaps = 63/470 (13%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV--KVTDAGMKHLLSIS-TL 142
           +G    L+ LNVA     +       + +T L  +DLS      +T   ++ L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQVS 201
             L +S   +          +  L  L L G   +  +++  LQ L  L    L   +  
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 202 N------------RGAAVLKM-FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE 248
           +             G   + +   RL++ N     + K   ++++  ++L+  +I   LE
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE 301

Query: 249 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308
                     +S+            L      L  L ++ +  S       + +L +LDL
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNKGSISFKKVALPSLSYLDL 357

Query: 309 SS---SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           S    S  G  S   +     +LR+L+LS               L  L+ L    + +  
Sbjct: 358 SRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAIIMSANF--MGLEELQHLDFQHSTLKR 413

Query: 366 -YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPS 423
               S    +  L ++DIS T+ K  +             F+ + +L  L          
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDG----------IFLGLTSLNTLK--------- 454

Query: 424 SVLAG--FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 481
             +AG  F                  N  +L  L+L + Q+   +     T   L  L++
Sbjct: 455 --MAGNSFKD--------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 482 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            + +L  +     + L  L+ L      +  S       P+SL   +L  
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 71/461 (15%), Positives = 158/461 (34%), Gaps = 68/461 (14%)

Query: 87  GAFR---YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSIST 141
            A+    +L +L +     + S +  + +G+T L+ L         +    +  L++   
Sbjct: 74  KAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT--- 129

Query: 142 LEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL----EYLDLW 196
           L+KL ++   + +  + A  S+L NL  +DL    +  + +  LQ L +       LD+ 
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPL 256
            + +        +   +L  L L     +   NI      NL+   +  ++ G       
Sbjct: 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNS--SNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIG-- 314
            +I         E    + I+   L++ +  +  + +F  L     +  + L+   I   
Sbjct: 247 LEIFEPSI---MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN---VSAMSLAGVSIKYL 300

Query: 315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 374
           +D  +         ++L++   +            LP L+ L+L+  +           +
Sbjct: 301 EDVPKHF-----KWQSLSIIRCQLKQ----FPTLDLPFLKSLTLTMNKGSI--SFKKVAL 349

Query: 375 PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVG 434
           PSL ++D+S   +            +S      + +L L                     
Sbjct: 350 PSLSYLDLSRNALSFSGCC-----SYSDLGTNSLRHLDL--------------------- 383

Query: 435 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSL 491
           +    ++       L  L+ L+ + + +    +   S F   ++L++L +   +      
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLK--RVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 492 HQLSSLSKLTNLSIRD-AVLTNSGLGSFKPPRSLKLLDLHG 531
                L+ L  L +   +   N+    F    +L  LDL  
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 66/403 (16%), Positives = 114/403 (28%), Gaps = 86/403 (21%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           S+ + + LS   L        S+   L  LDL    +  +  ++   L  L  L L G+ 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
           + +           L  L    T +  L       + +L+ LN+++  I S         
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP----- 146

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKA-LEHLDL 308
                      F N            L  +D+S + +         FL +       LD+
Sbjct: 147 ---------AYFSNLTN---------LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368
           S + I    ++  A  G  L  L L     SS  +     +L  L +  L   +  D   
Sbjct: 189 SLNPID--FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE-- 244

Query: 369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAG 428
                  +L+  + S                    C + +    L          +    
Sbjct: 245 ------RNLEIFEPS---------------IMEGLCDVTIDEFRL----------TYT-- 271

Query: 429 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488
                    D    +     L ++  ++L    +    L  +    +   LS+    L  
Sbjct: 272 --------NDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 489 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
                L  L  L  L++       S         SL  LDL  
Sbjct: 322 FPTLDLPFLKSL-TLTM----NKGSISFKKVALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 78/439 (17%), Positives = 138/439 (31%), Gaps = 67/439 (15%)

Query: 117 LKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL 174
            K +DLS      +      +    S L+ L LS   +          L +LS L L G 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------ 228
           P+      S   LT LE L    +++++  +  +     L  LN+A   +          
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
           N+++L  ++LS   I +I                          FL     +   LD+S 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVN---------------DL-----QFLRENPQVNLSLDMSL 190

Query: 289 SSLSRFCFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA------ 341
           + +        Q   L  L L  +    + ++      A L    L    F         
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYAISYM--SMMPSLKFIDISNTDIKGMYPSGQMNVF 399
              I+ G L ++ I     T  +D++   +    + ++  + ++   IK +    +    
Sbjct: 251 EPSIMEG-LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH--- 306

Query: 400 FSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS------LTALQNLNHLE 453
           F      I+            FP+  L            L L+            L  L 
Sbjct: 307 FKWQSLSIIRCQLKQ------FPTLDLPFL-------KSLTLTMNKGSISFKKVALPSLS 353

Query: 454 RLNLEQTQVS--DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511
            L+L +  +S      +       L HL L       +S      L +L +L  + + L 
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLK 412

Query: 512 N-SGLGSFKPPRSLKLLDL 529
             +   +F     L  LD+
Sbjct: 413 RVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 55/262 (20%), Positives = 91/262 (34%), Gaps = 39/262 (14%)

Query: 89  FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWL 147
             +L+SL +   +    S  +    +  L  LDLSR  +  +       L  ++L  L L
Sbjct: 327 LPFLKSLTLTMNK---GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAA 206
           S  G      A    L+ L  LD     +  +   S    L KL YLD+  +        
Sbjct: 384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 207 VLKMFPRLSFLNLA---WTGVTK---LPNISSLECLNLSNCTIDSILEGNENKAPLAKIS 260
           +      L+ L +A   +   T      N ++L  L+LS C ++ I  G           
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG----------- 491

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSV 318
                F              L  L++S+++L         Q+ +L  LD S + I     
Sbjct: 492 ----VFDT---------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 319 EMVACVGANLRNLNLSNTRFSS 340
            +      +L   NL+N   + 
Sbjct: 539 ILQH-FPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
                 L+ L+         +   A   +  L  LD+S             L +++L  L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTL 453

Query: 146 WLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
            ++      + ++ + ++  NL+ LDL    +  +       L +L+ L++  + +    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 205 AAVLKMFPRLSFLNLAW---TGVTK--LPNISSLECLNLSNCTIDSI 246
           ++       LS L+ ++               SL   NL+N ++  I
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 79/468 (16%), Positives = 157/468 (33%), Gaps = 55/468 (11%)

Query: 85  YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV--KVTDAGMKHLLSISTL 142
            +G  + L+ LNVA     +       + +T L+ LDLS      +    ++ L  +  L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 143 E-KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQV 200
              L LS   +          +  L  L L     +  V++  +Q L  LE   L   + 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 201 SNRG------AAVLKMFPRLSFLNLAWTGVTKLPN--------ISSLECLNLSNCTIDSI 246
            N G       + L+    L+        +    +        ++++   +L + TI+ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL 306
            + + N      + L       +   F  ++   L  L  +++          + +LE L
Sbjct: 298 KDFSYNFG-WQHLELVN----CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 307 DLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           DLS + +        +  G  +L+ L+LS     +     L   L  LE L    + +  
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQ 410

Query: 366 YA-ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424
            +  S    + +L ++DIS+T  +  +             F  + +L       +    +
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG----------IFNGLSSLE-----VLKMAGN 455

Query: 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484
                                   L +L  L+L Q Q+   +    ++   L  L++ + 
Sbjct: 456 SFQENF-----------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-PRSLKLLDLHG 531
           +   +       L+ L  L      +  S     +  P SL  L+L  
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 75/403 (18%), Positives = 122/403 (30%), Gaps = 85/403 (21%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
            + + L LS   L   G     S   L VLDL    +  +   + Q L+ L  L L G+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
           + +           L  L    T +  L      ++ +L+ LN+++  I S         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---- 143

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALE-HLDL 308
                      F N          + L  LD+S++ +          L QM  L   LDL
Sbjct: 144 ----------YFSN---------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368
           S + +    ++  A     L  L L N   S   +      L  LE+  L   +  +   
Sbjct: 185 SLNPMN--FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-- 240

Query: 369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAG 428
                  +L+  D S                    C + +    L          + L  
Sbjct: 241 ------GNLEKFDKSA---------------LEGLCNLTIEEFRL----------AYLDY 269

Query: 429 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488
           ++            +     L ++   +L    +    +   S      HL L N     
Sbjct: 270 YLDD---------IIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNFGWQHLELVNCKFGQ 318

Query: 489 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
               +L SL +LT  S +          S     SL+ LDL  
Sbjct: 319 FPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLSR 356

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 7e-14
 Identities = 83/470 (17%), Positives = 156/470 (33%), Gaps = 98/470 (20%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSE 149
           L +L +     + S AL A +G++ L++L         + +  + HL +   L++L ++ 
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAH 133

Query: 150 TGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY----LDLWGSQVSNRG 204
             + +  +    S+L NL  LDL    +  +    L+VL ++      LDL  + ++   
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI----LEGNENKAPLAKIS 260
               K   RL  L L     +   N+       L+   +  +         N     K +
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDS--LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 261 LAGTTFINERE-AFLYIETSL------------LSFLDVSNSSLSRFCFLTQMKALEHLD 307
           L G   +   E    Y++  L            +S   + + ++ R    +     +HL+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
           L +   G    +       +L+ L  ++ +  +A   +    LP+LE L LS   +    
Sbjct: 311 LVNCKFG----QFPTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKG 363

Query: 368 ISYMSM--MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV 425
               S     SLK++D+S   +  M  +                                
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSN-------------------------------- 391

Query: 426 LAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE---LIHLSLR 482
                                  L  LE L+ + + +    +   S F     LI+L + 
Sbjct: 392 --------------------FLGLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDIS 429

Query: 483 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL-GSFKPPRSLKLLDLHG 531
           +           + LS L  L +       + L   F   R+L  LDL  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 56/326 (17%), Positives = 117/326 (35%), Gaps = 23/326 (7%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146
             F  L +++      VT   +   +     + L+L  C            ++       
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC------KFGQFPTLKLKSLKR 329

Query: 147 LSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
           L+ T            L +L  LDL    L       +S    T L+YLDL  + V    
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENKAP-LA 257
           +  L +  +L  L+   + + ++       ++ +L  L++S+        G  N    L 
Sbjct: 390 SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF--LTQMKALEHLDLSSSMI-G 314
            + +AG +F       ++ E   L+FLD+S   L +        + +L+ L++S +    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMS 372
            D+         +L+ L+ S     ++    L     +L  L+L+           S++ 
Sbjct: 509 LDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

Query: 373 MMPSLKFIDISNTDIKGMYPSGQMNV 398
            +   + + +    ++   PS +  +
Sbjct: 567 WIKDQRQLLVEVERMECATPSDKQGM 592

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 73/465 (15%), Positives = 141/465 (30%), Gaps = 83/465 (17%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L+ LN+      T         +T L+ L +      ++        +++L +L +    
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           L       L S++++  L L       L+     +L+ + YL+L  + ++    + L + 
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 212 PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 271
              S +       + L + S  E L L    I  + E   +   L  +     +  +   
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 272 AFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NL 328
               +ET  +  L +    L        + ++ ++ + + +S +    V         +L
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSL 336

Query: 329 RNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISN 384
             L+LS        +      G  P+L+ L LS   +         +  + +L  +DIS 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT 444
                M  S                                                   
Sbjct: 397 NTFHPMPDS--------------------------------------------------- 405

Query: 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH------------ 492
             Q    +  LNL  T +    +      + L  L + N +L   SL             
Sbjct: 406 -CQWPEKMRFLNLSSTGI---RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461

Query: 493 QLSSL------SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
           +L +L        L  + I    L +   G F    SL+ + LH 
Sbjct: 462 KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 74/422 (17%), Positives = 146/422 (34%), Gaps = 58/422 (13%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           + ++ L LS   +T  G   L +  NL VL L    +  +   +   L  LE+LDL  + 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENK 253
           +S+  ++       L +LNL       L       N+++L+ L + N    S +      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI------ 139

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSS 311
                           R  F  +  + L+ L++   SL  +    L  ++ + HL L  S
Sbjct: 140 ---------------RRIDFAGL--TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH--LPNLEILSLSGTQIDDYAIS 369
                       + +++R L L +T  +      L        ++ L+  G+ + D + +
Sbjct: 183 ESAFLLEIFADIL-SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 370 YMSMMP-------SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFP 422
            +  +         ++F D +   +    PS   +   S    +    +    +    + 
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSE--SDVVSELGKVETVTI-RRLHIPQFYL 298

Query: 423 SSVLAGFIQQVGAETDLVLS--------LTALQNLNHLERLNLEQTQVSDATLFPLSTFK 474
              L+     +     + +          +  Q+L  LE L+L +  + +  L   +   
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 475 E---LIHLSLRNASLTDVSL--HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 529
               L  L L    L  +      L +L  LT+L I           S + P  ++ L+L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNL 417

Query: 530 HG 531
             
Sbjct: 418 SS 419

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 41/266 (15%)

Query: 281 LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLS 334
           +  LD+S + ++               L+ L L SS I   ++E  A     +L +L+LS
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACAN---LQVLILKSSRIN--TIEGDAFYSLGSLEHLDLS 82

Query: 335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM-SMMPSLKFIDISNTDIKGMYPS 393
           +   SS       G L +L+ L+L G       ++ +   + +L+ + I N +       
Sbjct: 83  DNHLSSLSSSWF-GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 394 GQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452
                      F  + +L  L      +                        +L+++  +
Sbjct: 142 I---------DFAGLTSLNELEIKALSLR------------------NYQSQSLKSIRDI 174

Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512
             L L  ++ +            + +L LR+ +L       L      + +       + 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 513 SGLGSFKPPRSLKLLDLHGGWLLTED 538
               SF     L    L    +  +D
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDD 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 2e-18
 Identities = 47/257 (18%), Positives = 94/257 (36%), Gaps = 48/257 (18%)

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
             K  L +  +T       + L ++  +      +  +  + +Q L  +  L L G++++
Sbjct: 23  TIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT 78

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPL 256
           +     L     L +L L    +  L ++     L+ L+L +  I  I  L         
Sbjct: 79  D--IKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ---- 132

Query: 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD 316
                                   L  L + N+ ++    L+++  L+ L L  + I D 
Sbjct: 133 ------------------------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD- 167

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD---YAISYMSM 373
            +  +A +   L+NL LS    S   +  LA  L NL++L L   +  +      S + +
Sbjct: 168 -IVPLAGLT-KLQNLYLSKNHISD--LRALA-GLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 374 MPSLKFIDISNTDIKGM 390
             ++K  D S    + +
Sbjct: 223 PNTVKNTDGSLVTPEII 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.3 bits (200), Expect = 3e-16
 Identities = 55/312 (17%), Positives = 97/312 (31%), Gaps = 100/312 (32%)

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLA 262
              F      NL    VT     +   S++ +  +N  I S+  ++   N          
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN---------- 66

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
                             ++ L ++ + L+    LT +K L  L L  + I D  +  + 
Sbjct: 67  ------------------VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LSSLK 106

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380
            +   L++L+L +   S      + G  HLP LE L L   +I D  I+ +S +  L  +
Sbjct: 107 DL-KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL 158

Query: 381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV 440
            + +  I                                                     
Sbjct: 159 SLEDNQIS---------------------------------------------------- 166

Query: 441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
             +  L  L  L+ L L +  +SD  L  L+  K L  L L +    +  ++  S+L   
Sbjct: 167 -DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 501 TNLSIRDAVLTN 512
             +   D  L  
Sbjct: 224 NTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 7e-16
 Identities = 49/308 (15%), Positives = 93/308 (30%), Gaps = 94/308 (30%)

Query: 224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 283
           +      +     NL   ++         +  L                        +  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDA----VTQNELNS----------------------IDQ 47

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +  +NS +     +  +  +  L L+ + + D  ++ +  +  NL  L L   +     +
Sbjct: 48  IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNL-KNLGWLFLDENKIKD--L 102

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
             L   L  L+ LSL    I D  I+ +  +P L+ + + N  I                
Sbjct: 103 SSLK-DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT--------------- 144

Query: 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463
                                                  +T L  L  L+ L+LE  Q+S
Sbjct: 145 --------------------------------------DITVLSRLTKLDTLSLEDNQIS 166

Query: 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP--- 520
           D  + PL+   +L +L L    ++D+    L+ L  L  L +      N  +        
Sbjct: 167 D--IVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 521 PRSLKLLD 528
           P ++K  D
Sbjct: 223 PNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 7e-16
 Identities = 50/291 (17%), Positives = 106/291 (36%), Gaps = 50/291 (17%)

Query: 108 LWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167
           ++         + +L +   VTD        +++++++  + + + +  +  +  L N++
Sbjct: 14  IFPDDAFAETIKDNLKKK-SVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVT 68

Query: 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL 227
            L L G  +TD+  + L  L  L +L L  +++ +   + LK   +L  L+L   G++ +
Sbjct: 69  KLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI 124

Query: 228 PNISS---LECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282
             +     LE L L N  I  I  L                                 L 
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTK----------------------------LD 156

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
            L + ++ +S    L  +  L++L LS + I D  +  +A +  NL  L L +    +  
Sbjct: 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK-NLDVLELFSQECLN-- 211

Query: 343 VGILAGHLPNLEIL-SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYP 392
                 H  NL +  ++  T         +S     +  ++     +    
Sbjct: 212 --KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 3e-14
 Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 69/252 (27%)

Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
               ++   S++      ++ +++ +  ++S I    V+ +  +  N+  L L+  + + 
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYL-PNVTKLFLNGNKLTD 79

Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFF 400
             +  L  +L NL  L L   +I D  +S +  +  LK + + +  I             
Sbjct: 80  --IKPLT-NLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS------------ 122

Query: 401 SAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 460
                                                     +  L +L  LE L L   
Sbjct: 123 -----------------------------------------DINGLVHLPQLESLYLGNN 141

Query: 461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFK 519
           +++D  +  LS   +L  LSL +  ++D+    L+ L+KL NL +    +++   L   K
Sbjct: 142 KITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRALAGLK 197

Query: 520 PPRSLKLLDLHG 531
              +L +L+L  
Sbjct: 198 ---NLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 73/251 (29%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
               ++ + +             +L    + D        +  ++  +  +N+   S   
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTD--AVTQNEL-NSIDQIIANNSDIKS--- 57

Query: 344 GILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFS 401
             + G  +LPN+  L L+G ++ D  I  ++ + +L ++ +    IK             
Sbjct: 58  --VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIK------------- 100

Query: 402 AYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 461
                                                    L++L++L  L+ L+LE   
Sbjct: 101 ----------------------------------------DLSSLKDLKKLKSLSLEHNG 120

Query: 462 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKP 520
           +SD  +  L    +L  L L N  +TD++   LS L+KL  LS+ D  +++   L     
Sbjct: 121 ISD--INGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLT- 175

Query: 521 PRSLKLLDLHG 531
              L+ L L  
Sbjct: 176 --KLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 8e-11
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L   + L  L + + + +    L +L  +  LK L L     ++D  +  L+ +  LE L
Sbjct: 83  LTNLKNLGWLFLDENK-IKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESL 136

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
           +L    +T   I +LS L  L  L L    ++D  +  L  LTKL+ L L  + +S+  A
Sbjct: 137 YLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA 192

Query: 206 AVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLNLSNCTIDSI 246
             L     L  L L              N+     +  ++ ++ + 
Sbjct: 193 --LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
            L  +  L+ L L    K+TD  +  L  ++ L+ L L +  ++   I  L+ L  L  L
Sbjct: 126 GLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNL 180

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA---AVLKMFPRLSFLNLAWTGVTK 226
            L    ++DL  R+L  L  L+ L+L+  +  N+     + L +   +   + +      
Sbjct: 181 YLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
           + +    E  N+     +   E +        I  A   F
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 452 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511
           +       T +    +FP   F E I  +L+  S+TD      + L+ +  +   ++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 512 N-SGLGSFKPPRSLKLLDLHG 531
           +  G+       ++  L L+G
Sbjct: 57  SVQGIQYLP---NVTKLFLNG 74

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 62/284 (21%), Positives = 109/284 (38%), Gaps = 49/284 (17%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170
              +    ++   +   VTD        +  +  L    TG+T   I  +  L NL  L+
Sbjct: 15  DPALANAIKIAAGKS-NVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI 230
           L    +TDL    L+ LTK+  L+L G+ + N   + +     +  L+L  T +T +  +
Sbjct: 70  LKDNQITDL--APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 231 S---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
           +   +L+ L L    I +I  L G  N                            L +L 
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTN----------------------------LQYLS 157

Query: 286 VSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI 345
           + N+ +S    L  +  L  L    + I D  +  +A +  NL  ++L N + S   V  
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASL-PNLIEVHLKNNQISD--VSP 212

Query: 346 LAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI-DISNTDIK 388
           LA +  NL I++L+   I +  + Y + +     +   S   I 
Sbjct: 213 LA-NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 52/281 (18%), Positives = 106/281 (37%), Gaps = 41/281 (14%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L +       +   +       +  +  L       VT   ++ +  ++ L  L L +  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDNQ 74

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           +T   +A L +L  ++ L+L G P+ ++   ++  L  ++ LDL  +Q+++     L   
Sbjct: 75  IT--DLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 212 PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 268
             L  L L    +T +  ++   +L+ L++ N  +  +        PLA +S        
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-------TPLANLSK------- 174

Query: 269 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 328
                       L+ L   ++ +S    L  +  L  + L ++ I D  V  +A    NL
Sbjct: 175 ------------LTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--VSPLANTS-NL 219

Query: 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
             + L+N   ++  V      +    +   SG  I    IS
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 52/351 (14%), Positives = 108/351 (30%), Gaps = 118/351 (33%)

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
             +L N   +  G   VTD V  +   L  +  L  +G+ V+      ++    L  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 220 AWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYI 276
               +T L  +     +  L LS   + ++       A L                    
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNV----SAIAGLQS------------------ 108

Query: 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
               +  LD++++ ++    L  +  L+ L L  + I +            +  L     
Sbjct: 109 ----IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN------------ISPL----- 147

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQM 396
                        L NL+ LS+   Q+ D  ++ ++ +  L  +   +  I         
Sbjct: 148 -----------AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS-------- 186

Query: 397 NVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLN 456
                                                         ++ L +L +L  ++
Sbjct: 187 ---------------------------------------------DISPLASLPNLIEVH 201

Query: 457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507
           L+  Q+SD  + PL+    L  ++L N ++T+  +   ++L     +    
Sbjct: 202 LKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPS 250

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 62/361 (17%), Positives = 123/361 (34%), Gaps = 118/361 (32%)

Query: 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSN 240
              L     +    S V++           ++ L+   TGVT +  +    +L  L L +
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
             I  +       APL  ++                    ++ L++S + L     +  +
Sbjct: 73  NQITDL-------APLKNLTK-------------------ITELELSGNPLKNVSAIAGL 106

Query: 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           ++++ LDL+S+ I D +               L+               L NL++L L  
Sbjct: 107 QSIKTLDLTSTQITDVT--------------PLAG--------------LSNLQVLYLDL 138

Query: 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420
            QI +  IS ++ + +L+++ I N  +                                 
Sbjct: 139 NQITN--ISPLAGLTNLQYLSIGNAQVS-------------------------------- 164

Query: 421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 480
                                 LT L NL+ L  L  +  ++SD  + PL++   LI + 
Sbjct: 165 ---------------------DLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVH 201

Query: 481 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 540
           L+N  ++DVS   L++ S L  +++ +  +TN  +          ++    G  +    I
Sbjct: 202 LKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

Query: 541 L 541
            
Sbjct: 260 S 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 49/255 (19%), Positives = 95/255 (37%), Gaps = 49/255 (19%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
                 + +L+      VT+  +  +  +  L  L+L    ++TD  +  L +++ + +L
Sbjct: 37  QADLDGITTLSAFGTG-VTT--IEGVQYLNNLIGLELKDN-QITD--LAPLKNLTKITEL 90

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            LS   L    ++ ++ LQ++  LDL    +TD+    L  L+ L+ L L  +Q++N   
Sbjct: 91  ELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN--I 144

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKIS 260
           + L     L +L++    V+ L  ++    L  L   +  I  I  L    N        
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN-------- 196

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
                               L  + + N+ +S    L     L  + L++  I +  V  
Sbjct: 197 --------------------LIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFY 236

Query: 321 VACVGANLRNLNLSN 335
                 NL   N+  
Sbjct: 237 ----NNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 83  MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142
           +  L     L+ L +   + +T+  +  L G+T L+ L +    +V+D  +  L ++S L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQ-ITN--ISPLAGLTNLQYLSIGNA-QVSD--LTPLANLSKL 175

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
             L   +  ++   I+ L+SL NL  + L    ++D  +  L   + L  + L    ++N
Sbjct: 176 TTLKADDNKIS--DISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITN 231

Query: 203 RGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSN 240
                    P     NL    V K P+ + +    +S+
Sbjct: 232 --------QPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGL 515
            + T ++   +FP       I ++   +++TD      + L  +T LS     +T   G+
Sbjct: 4   TQPTAINV--IFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGV 59

Query: 516 GSFKPPRSLKLLDLHG 531
                  +L  L+L  
Sbjct: 60  QYLN---NLIGLELKD 72

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 82.2 bits (203), Expect = 4e-17
 Identities = 57/316 (18%), Positives = 104/316 (32%), Gaps = 63/316 (19%)

Query: 89  FRYLRSLNVADCRRV--------TSSALW-------------ALTGMTCLKELDLSRCVK 127
           F  L    +     V        +  +LW                 +     +       
Sbjct: 21  FSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRS 80

Query: 128 VTDAGMKHLLSISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQV 186
             D  +    S   ++ + LS + +    +  +LS    L  L L GL ++D ++ +L  
Sbjct: 81  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140

Query: 187 LTKLEYLDLWG-SQVSNRG-AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID 244
            + L  L+L G S  S      +L    RL  LNL+W             C + +   + 
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW-------------CFDFTEKHVQ 187

Query: 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE 304
             +        + +++L+G                     ++  S LS      +   L 
Sbjct: 188 VAVAHVSET--ITQLNLSGYRK------------------NLQKSDLSTLV--RRCPNLV 225

Query: 305 HLDLSS-SMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSGTQ 362
           HLDLS   M+ +D  +    +   L++L+LS         +  L   +P L+ L + G  
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIV 283

Query: 363 IDDYAISYMSMMPSLK 378
            D         +P L+
Sbjct: 284 PDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 58/257 (22%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-T 361
           ++H+DLS+S+I   ++  +    + L+NL+L   R S   V  LA    NL  L+LSG +
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCS 153

Query: 362 QIDDYAISYM-SMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420
              ++A+  + S    L  +++S                   +CF               
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLS-------------------WCFDF------------- 181

Query: 421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE--QTQVSDATLFPLSTF-KELI 477
                           T+  + +        + +LNL   +  +  + L  L      L+
Sbjct: 182 ----------------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 478 HLSLRN-ASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLL 535
           HL L +   L +    +   L+ L +LS+     +    L       +LK L + G  ++
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG--IV 283

Query: 536 TEDAILQFCKMHPRIEV 552
            +  +    +  P +++
Sbjct: 284 PDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 53/282 (18%), Positives = 88/282 (31%), Gaps = 61/282 (21%)

Query: 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLW--LSETGLTADGIALLSSLQNLSVLDLGG 173
           CL   +L +   V     K    +++ E LW  L  TG           L    +     
Sbjct: 23  CLCLPELLKVSGVC----KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCP 78

Query: 174 LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG-AAVLKMFPRLSFLNLAWTGVT-----KL 227
               D  L       +++++DL  S +       +L    +L  L+L    ++      L
Sbjct: 79  RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138

Query: 228 PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 287
              S+L  LNLS C+                 S                        + +
Sbjct: 139 AKNSNLVRLNLSGCS---------------GFS------------------------EFA 159

Query: 288 NSSLSRFCFLTQMKALEHLDLSS-SMIGDDSVE-MVACVGANLRNLNLS--NTRFSSAGV 343
             +L   C       L+ L+LS      +  V+  VA V   +  LNLS        + +
Sbjct: 160 LQTLLSSC-----SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 344 GILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISN 384
             L    PNL  L LS    + +        +  L+ + +S 
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L  L+++D   + +        +  L+ L LSRC  +    +  L  I TL+ L +    
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184
           +    + LL   + L  L +     T +   ++
Sbjct: 283 VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 33  SLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYL 92
           +L     +L  S L  L+RR    P+L+         ++L     +  +         YL
Sbjct: 201 NLSGYRKNLQKSDLSTLVRR---CPNLVH--------LDLSDSVMLKNDCFQEFFQLNYL 249

Query: 93  RSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGL 152
           + L+++ C  +    L  L  +  LK L +     V D  ++ L     L  L ++ +  
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK--EALPHLQINCSHF 305

Query: 153 TADGIALLSSLQNLSVLDL 171
           T      + + +N  +  +
Sbjct: 306 TTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 3/133 (2%)

Query: 420 IFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIH 478
           +    +  G I      + +   L    +   ++ ++L  + +  +TL  + +   +L +
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122

Query: 479 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGS-FKPPRSLKLLDLHGGWLLT 536
           LSL    L+D  ++ L+  S L  L++      +   L +       L  L+L   +  T
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182

Query: 537 EDAILQFCKMHPR 549
           E  +         
Sbjct: 183 EKHVQVAVAHVSE 195

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 67/393 (17%), Positives = 137/393 (34%), Gaps = 89/393 (22%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTA-DGIALLSSLQNLSVL 169
              +  L  LD      +TD  M  +  ++ L KL  +   +T  D    LS   NL+ L
Sbjct: 38  EEQLATLTSLDCHNS-SITD--MTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYL 90

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP- 228
                 +T+L    +  LTKL YL+   ++++      +   P L++LN A   +T++  
Sbjct: 91  ACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARNTLTEIDV 144

Query: 229 -NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 287
            + + L  L+       + L+                                L+ LD S
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQ--------------------------LTTLDCS 178

Query: 288 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 347
            + ++    ++Q K L  L+  ++ I    +++   +   L  L+ S+ + +     I  
Sbjct: 179 FNKITEL-DVSQNKLLNRLNCDTNNI--TKLDLNQNI--QLTFLDCSSNKLTE----IDV 229

Query: 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407
             L  L     S   + +  +   S +  L  +    TD+  +  +    +         
Sbjct: 230 TPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQL--------- 277

Query: 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 467
              ++  A G                       +    + +   L  L+ +   +++   
Sbjct: 278 ---IYFQAEGCRK--------------------IKELDVTHNTQLYLLDCQAAGITE--- 311

Query: 468 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500
             LS   +L++L L N  LT++ +   + L  L
Sbjct: 312 LDLSQNPKLVYLYLNNTELTELDVSHNTKLKSL 344

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 66/396 (16%), Positives = 120/396 (30%), Gaps = 91/396 (22%)

Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 198
           ++TL  L    + +T   +  +  L  L+ L      +T L    L   T L YL    +
Sbjct: 41  LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN 95

Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI-LEGNENKAP 255
           +++N     +    +L++LN     +TKL       L  LN +  T+  I +  N     
Sbjct: 96  KLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQ--- 149

Query: 256 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD 315
                                    L+ LD   +       +T    L  LD S + I +
Sbjct: 150 -------------------------LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184

Query: 316 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375
             V         L  LN      +   +         L  L  S  ++ +  ++    + 
Sbjct: 185 LDVSQNK----LLNRLNCDTNNITKLDLN----QNIQLTFLDCSSNKLTEIDVT---PLT 233

Query: 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
            L + D S   +        ++   + +C        L                      
Sbjct: 234 QLTYFDCSVNPLT-ELDVSTLSKLTTLHCI---QTDLLE--------------------- 268

Query: 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 495
                + LT    L + +     + +  D     ++   +L  L  + A +T++ L Q  
Sbjct: 269 -----IDLTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITELDLSQ-- 316

Query: 496 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
              KL  L + +  LT   +        LK L    
Sbjct: 317 -NPKLVYLYLNNTELTELDVSHNT---KLKSLSCVN 348

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 48/299 (16%), Positives = 105/299 (35%), Gaps = 51/299 (17%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170
           +T +T L  L+     K+T   +        L  L  +   LT   +   S    L+ LD
Sbjct: 102 VTPLTKLTYLNCDTN-KLTKLDVSQN---PLLTYLNCARNTLTEIDV---SHNTQLTELD 154

Query: 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-- 228
                    +   +   T+L  LD   ++++      +     L+ LN     +TKL   
Sbjct: 155 CHLNKKITKL--DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLDLN 209

Query: 229 NISSLECLNLSNCTIDSI----------LEGNENKAPLAKISLAGTTFINEREAFLYIET 278
               L  L+ S+  +  I           + + N   L ++ ++  + +      L+   
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP--LTELDVSTLSKLTT----LHCIQ 263

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
           + L  +D+++++   +      + ++ LD++ +                L  L+      
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT--------------QLYLLDCQAAGI 309

Query: 339 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMN 397
           +     +     P L  L L+ T++ +  +  +S    LK +   N  I+     G++ 
Sbjct: 310 TE----LDLSQNPKLVYLYLNNTELTE--LD-VSHNTKLKSLSCVNAHIQDFSSVGKIP 361

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 59/384 (15%), Positives = 116/384 (30%), Gaps = 61/384 (15%)

Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
            N +        +      S + L  L  LD   S +++     ++    L+ L      
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 224 VTKLP--NISSLECLNLSNCTIDSI----------LEGNENKAPLAKISLAGTTFINERE 271
           +T L     ++L  L   +  + ++          L  + NK  L K+ ++    +    
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK--LTKLDVSQNPLLTY-- 131

Query: 272 AFLYIE----TSL-------LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
             L       T +       L+ LD   +       +T    L  LD S + I +  V  
Sbjct: 132 --LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQ 189

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380
                  L  LN      +   +         L  L  S  ++ +  +   + +  L + 
Sbjct: 190 N----KLLNRLNCDTNNITKLDL----NQNIQLTFLDCSSNKLTEIDV---TPLTQLTYF 238

Query: 381 DISNTDIKGMYPSGQMNVFFSAYCFM-------IVYNLFLHAYGYVIFPSSVLAGFIQQV 433
           D S   +        ++   + +C         + +N  L  Y        +    +   
Sbjct: 239 DCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI-YFQAEGCRKIKELDVTHN 296

Query: 434 GAETDLVLSLTALQNLN-----HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488
                L      +  L+      L  L L  T++++     +S   +L  LS  NA + D
Sbjct: 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQD 353

Query: 489 VSLHQLSSLSKLTNLSIRDAVLTN 512
            S   +  +  L N    +     
Sbjct: 354 FSS--VGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 50/401 (12%), Positives = 104/401 (25%), Gaps = 125/401 (31%)

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
                 +   + A        L  L+ LD     +TD+    ++ LT L  L    + ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI-LEGNENKAPLAKIS 260
                       L                ++L  L   +  + ++ +             
Sbjct: 78  T-----------LDLSQN-----------TNLTYLACDSNKLTNLDVTPLTK-------- 107

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
                               L++L+   + L++   ++Q   L +L+ + + + +  V  
Sbjct: 108 --------------------LTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSH 146

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380
                  L  L+    +  +    +       L  L  S  +I +  +S       L  +
Sbjct: 147 NT----QLTELDCHLNKKITK---LDVTPQTQLTTLDCSFNKITELDVSQN---KLLNRL 196

Query: 381 D-----ISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
           +     I+  D+                       L                        
Sbjct: 197 NCDTNNITKLDLNQNI------------------QL------------------------ 214

Query: 436 ETDLVLS---LTAL--QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 490
            T L  S   LT +    L  L   +     +++     +ST  +L  L      L ++ 
Sbjct: 215 -TFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEID 270

Query: 491 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
              L+  ++L                       L LLD   
Sbjct: 271 ---LTHNTQLIYFQAEG--CRKIKELDVTHNTQLYLLDCQA 306

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 47/277 (16%), Positives = 90/277 (32%), Gaps = 44/277 (15%)

Query: 89  FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
             +   L   DC          +T  T L  LD S   K+T+  +        L +L   
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQN---KLLNRLNCD 199

Query: 149 ETGLTADGIAL-LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV 207
              +T     L L+    L+ LD     +T++ +  L   T+L Y D   + ++      
Sbjct: 200 TNNITK----LDLNQNIQLTFLDCSSNKLTEIDVTPL---TQLTYFDCSVNPLTE---LD 249

Query: 208 LKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNENKA---------PL 256
           +    +L+ L+   T + ++   + + L       C     L+   N            +
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

Query: 257 AKISLAGTTFINEREAFLYIE----TSL-------LSFLDVSNSSLSRFCFLTQMKALEH 305
            ++ L+    +      LY+     T L       L  L   N+ +  F  + ++ AL +
Sbjct: 310 TELDLSQNPKLVY----LYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
              +         E +     N   + +S       G
Sbjct: 366 NFEAEGQTITMPKETLT---NNSLTIAVSPDLLDQFG 399

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 8e-17
 Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 48/270 (17%)

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
             + +   K  L +  +T       + L ++  +      +  +  + +Q L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 75

Query: 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGN 250
            G+++++     L     L +L L    V  L ++     L+ L+L +  I  I  L   
Sbjct: 76  NGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310
                                         L  L + N+ ++    L+++  L+ L L  
Sbjct: 134 PQ----------------------------LESLYLGNNKITDITVLSRLTKLDTLSLED 165

Query: 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370
           + I    +  +A +   L+NL LS    S   +  LA  L NL++L L   +  +  I++
Sbjct: 166 NQI--SDIVPLAGL-TKLQNLYLSKNHISD--LRALA-GLKNLDVLELFSQECLNKPINH 219

Query: 371 MS---MMPSLKFIDISNTDIKGMYPSGQMN 397
            S   +  ++K  D S    + +   G   
Sbjct: 220 QSNLVVPNTVKNTDGSLVTPEIISDDGDYE 249

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 54/310 (17%), Positives = 97/310 (31%), Gaps = 96/310 (30%)

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
              F      NL    VT     +   S++ +  +N  I S+ +G +             
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQY------------ 66

Query: 265 TFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324
              N            ++ L ++ + L+    L  +K L  L L  + + D  +  +  +
Sbjct: 67  -LPN------------VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDL 111

Query: 325 GANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
              L++L+L +   S      + G  HLP LE L L   +I D  I+ +S +  L  + +
Sbjct: 112 -KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSL 163

Query: 383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS 442
            +  I                                                       
Sbjct: 164 EDNQIS-----------------------------------------------------D 170

Query: 443 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 502
           +  L  L  L+ L L +  +SD  L  L+  K L  L L +    +  ++  S+L     
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 503 LSIRDAVLTN 512
           +   D  L  
Sbjct: 229 VKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 57/293 (19%)

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI 313
            PL   ++   T I +  +            ++   S++      ++ +++ +  ++S I
Sbjct: 1   GPLGSETITVPTPIKQIFSDDAFAE--TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI 58

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
               V+ +  +  N+  L L+  + +   +  LA +L NL  L L   ++ D  +S +  
Sbjct: 59  KS--VQGIQYL-PNVTKLFLNGNKLTD--IKPLA-NLKNLGWLFLDENKVKD--LSSLKD 110

Query: 374 MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV 433
           +  LK + + +  I  +     +              L                      
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLP------------QL---------------------- 136

Query: 434 GAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487
                L L       +T L  L  L+ L+LE  Q+SD  + PL+   +L +L L    ++
Sbjct: 137 ---ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 191

Query: 488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 540
           D+    L+ L  L  L +      N  +           +    G L+T + I
Sbjct: 192 DLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 13/178 (7%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L+SL++     ++   +  L  +  L+ L L    K+TD  +  L  ++ L+ L L +  
Sbjct: 114 LKSLSLEHNG-ISD--INGLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           ++   I  L+ L  L  L L    ++DL  R+L  L  L+ L+L+  +  N+        
Sbjct: 168 ISD--IVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 212 PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
              + +      +     IS     E  N+     +   E +        I  A   F
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L   + L  L + + + V    L +L  +  LK L L     ++D  +  L+ +  LE L
Sbjct: 86  LANLKNLGWLFLDENK-VKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESL 139

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
           +L    +T   I +LS L  L  L L    ++D  +  L  LTKL+ L L  + +S+  A
Sbjct: 140 YLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA 195

Query: 206 AVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI 246
             L     L  L L        P     N+     +  ++ ++ + 
Sbjct: 196 --LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 81.7 bits (202), Expect = 9e-17
 Identities = 35/301 (11%), Positives = 89/301 (29%), Gaps = 78/301 (25%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSETGLTADGIA----LLSSLQNLSV 168
           ++   L     +T    K + ++     +++++ LS   +  +        ++S ++L +
Sbjct: 6   IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 169 LDLGGLPVTDL----------VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
            +   +    +          +L++L    KL  + L  +         L  F       
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF------- 117

Query: 219 LAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
                   L   + LE L L N  +                           +A   I  
Sbjct: 118 --------LSKHTPLEHLYLHNNGLGP-------------------------QAGAKIAR 144

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSN 335
           +L        +  +          L  +    + + + S++  A        L  + +  
Sbjct: 145 ALQELAVNKKAKNA--------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 336 TRFSSAGVGILAG----HLPNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDI 387
                 G+  L      +   L++L L          S +++     P+L+ + +++  +
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

Query: 388 K 388
            
Sbjct: 257 S 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 50/349 (14%), Positives = 90/349 (25%), Gaps = 97/349 (27%)

Query: 59  LLEVFKHNAEAIELR-GENSVDAEWMAYLGAF----RYLRSLNVADCR---------RVT 104
           +  V   +    E+    N++  E   +L       + L     +D              
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSETGLTADGI-AL 159
              L AL     L  + LS          + L+      + LE L+L   GL       +
Sbjct: 84  RLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA----VLKMFPRLS 215
             +LQ L+V             +  +    L  +    +++ N          +    L 
Sbjct: 143 ARALQELAVN------------KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 216 FLNLAWTGVTK----------LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265
            + +   G+            L     L+ L+L + T       +   + LA        
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIA------ 239

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA--- 322
                                          L     L  L L+  ++       V    
Sbjct: 240 -------------------------------LKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 323 --CVGANLRNLNLSNTRFSSAGVGILA----GHLPNLEILSLSGTQIDD 365
                  L+ L L         V  L       +P+L  L L+G +  +
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 50/415 (12%), Positives = 107/415 (25%), Gaps = 133/415 (32%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           ++  ++E   L    +T +    +                       L     ++ + L 
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSV--------------------FAVLLEDDSVKEIVLS 40

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPL 256
           G+ +    A  L                  + +   LE    S+     +   +E    L
Sbjct: 41  GNTIGTEAARWLSEN---------------IASKKDLEIAEFSDIFTGRV--KDEIPEAL 83

Query: 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC------FLTQMKALEHLDLSS 310
             +  A                  L  + +S+++           FL++   LEHL L +
Sbjct: 84  RLLLQALLKCPK------------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131

Query: 311 SMIGDDSVEMVA------------CVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEI 355
           + +G  +   +A                 LR++     R  +  +   A        L  
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 356 LSLSGTQIDDYAISY-----MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYN 410
           + +    I    I +     ++    LK +D+ +                          
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT------------------------ 227

Query: 411 LFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD------ 464
                                 +G+     L+  AL++  +L  L L    +S       
Sbjct: 228 -------------------FTHLGSS---ALA-IALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 465 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTNSG 514
              F       L  L L+   +   ++  L +     +  L  L +     +   
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLTADG-IALLSSLQ 164
            L     LK LDL      T  G       L S   L +L L++  L+A G  A++ +  
Sbjct: 211 GLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 165 N-----LSVLDLGGLPVTDLVLRSL-----QVLTKLEYLDLWGSQVSNRGAAVLKM 210
                 L  L L    +    +R+L     + +  L +L+L G++ S     V ++
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 78/417 (18%), Positives = 140/417 (33%), Gaps = 39/417 (9%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
            + + L LS   L   G     S   L VLDL    +  +   + Q L+ L  L L G+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN--EN 252
           + +           L  L    T +  L      ++ +L+ LN+++  I S        N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 253 KAPLAKISLAG---TTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHL 306
              L  + L+     +        L+    L   LD+S    + +    F  +   L  L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKL 205

Query: 307 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG------VGILAGHLPNLEILSLSG 360
            L ++    + ++      A L    L    F + G         L G L NL I     
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-LCNLTIEEFRL 264

Query: 361 TQIDDYAISYMSM---MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYG 417
             +D Y    + +   + ++    + +  I+ +        +   +  + + N       
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQ-- 318

Query: 418 YVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK--E 475
              FP+  L    +          +  +  +L  LE L+L +  +S       S F    
Sbjct: 319 ---FPTLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 476 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 531
           L +L L    +  +S      L +L +L  + + L   S    F   R+L  LD+  
Sbjct: 375 LKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 79/465 (16%), Positives = 155/465 (33%), Gaps = 64/465 (13%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE-- 149
           L+ L   +   + S   + +  +  LKEL+++  +  +    ++  +++ LE L LS   
Sbjct: 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 150 -TGLTADGIALLSSLQNLSV-LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS-NRGAA 206
              +    + +L  +  L++ LDL   P+  +   + + + +L  L L  +  S N    
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219

Query: 207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
            ++    L    L         N+   +   L      +I E            +     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326
                       S  S + V+   +  F +    + LE ++          ++       
Sbjct: 280 CLTN-------VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK------- 325

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM--MPSLKFIDISN 384
           +L+ L  ++ +  +A   +    LP+LE L LS   +        S     SLK++D+S 
Sbjct: 326 SLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 385 TDIKGMYPSG---------------QMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAG 428
             +  M  S                 +        F+ + NL +L            ++ 
Sbjct: 383 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-----------ISH 430

Query: 429 -FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASL 486
              +                 L+ LE L +      +  L    +  + L  L L    L
Sbjct: 431 THTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 487 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
             +S    +SLS L  L++    L +   G F    SL+ + LH 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 76/458 (16%), Positives = 148/458 (32%), Gaps = 61/458 (13%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           +      L+ LDLSRC ++         S+S L  L L+   + +  +   S L +L  L
Sbjct: 47  SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP 228
                 +  L    +  L  L+ L++  + + + +          L  L+L+   +  + 
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 229 NIS---------SLECLNLSNCTIDSI--------------LEGNENKAPLAKISLAGTT 265
                           L+LS   ++ I              L  N +   + K  + G  
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325
            +      L    +  +      S+L   C LT    +E   L+      D +  +    
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT----IEEFRLAYLDYYLDDIIDLFNCL 281

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
            N+ + +L +                +LE+++    Q           + SLK +  ++ 
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTS- 334

Query: 386 DIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAETDLVLS-- 442
                      N   +A+  + + +L FL      +      +       +   L LS  
Sbjct: 335 -----------NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 443 -LTAL----QNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQL 494
            +  +      L  LE L+ + + +    +   S F   + LI+L + +           
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 495 SSLSKLTNLSIRDAVLTNSGL-GSFKPPRSLKLLDLHG 531
           + LS L  L +       + L   F   R+L  LDL  
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 58/318 (18%), Positives = 116/318 (36%), Gaps = 21/318 (6%)

Query: 87  GAFR--YLRSLNVADCRRVTSSALWALTGMTCLKELDLS-----RCVKVTDAGMKHLLSI 139
           GAF+   L  L + +     +     + G+  L+   L          +       L  +
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 140 STLEKLWLSETGLTA---DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
             L         L     D I L + L N+S   L  + +  +  +        ++L+L 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELV 312

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPL 256
             +        LK   RL+F +          ++ SLE L+LS   +      +++    
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 257 AK---ISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS 310
                + L+    I     FL +E   L  LD  +     +S F     ++ L +LD+S 
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370
           +        +   +  +L  L ++   F    +  +   L NL  L LS  Q++  + + 
Sbjct: 431 THTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 371 MSMMPSLKFIDISNTDIK 388
            + + SL+ +++++  +K
Sbjct: 490 FNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 46/301 (15%)

Query: 76  NSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135
             +D      +  F  L +++      VT   +   +     + L+L  C          
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--- 321

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTKLEYL 193
            L + +L++L  +              L +L  LDL    L       +S    T L+YL
Sbjct: 322 -LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSIL 247
           DL  + V    +  L +  +L  L+   + + ++       ++ +L  L++S+       
Sbjct: 379 DLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALE 304
            G             G +               L  L ++ +S          T+++ L 
Sbjct: 438 NG----------IFNGLS--------------SLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 305 HLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
            LDLS   +  + +   A     +L+ LN+++ +  S   GI    L +L+ + L     
Sbjct: 474 FLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR-LTSLQKIWLHTNPW 530

Query: 364 D 364
           D
Sbjct: 531 D 531

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 53/430 (12%), Positives = 119/430 (27%), Gaps = 114/430 (26%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSLQ 164
             +    +  LDLS    +       L+       +++  L LS   L       L    
Sbjct: 17  FTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-- 73

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
                          +L ++     +  L+L G+ +S + +  L                
Sbjct: 74  ---------------ILAAIP--ANVTSLNLSGNFLSYKSSDEL-------------VKT 103

Query: 225 TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
                  ++  L+L                     S   ++                   
Sbjct: 104 LAAIP-FTITVLDLGWN----------------DFSSKSSS-------------EFKQAF 133

Query: 285 DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSS 340
               +S+              L+L  + +G  S     +++A + AN+ +LNL     +S
Sbjct: 134 SNLPASI------------TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 341 AGVGILAGHLPN----LEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGMY 391
                LA  L +    +  L LS   +   + + ++ +       +  +++    +    
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH--- 238

Query: 392 PSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNH 451
                N+         +  ++L                ++ +  E        A  N+  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDI------------VKNMSKE-QCKALGAAFPNIQK 285

Query: 452 LERLNLEQTQVSDATLFPLSTFKE-----LIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 506
           +  ++    ++  +   P+S             SL N  L     HQ +         +R
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 507 DAVLTNSGLG 516
           +++ T   L 
Sbjct: 346 ESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 39/319 (12%), Positives = 94/319 (29%), Gaps = 58/319 (18%)

Query: 91  YLRSLNVADCRRVTSSALWALTGM-----TCLKELDLSRCVKVTDAGMKHLLSI-----S 140
            + SLN++    +       L  +       +  L+LS    ++      L+        
Sbjct: 52  SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPF 109

Query: 141 TLEKLWLSETGLTADGI-----ALLSSLQNLSVLDLGGLPVTDLVLRSL-QVL----TKL 190
           T+  L L     ++        A  +   +++ L+L G  +       L Q+L      +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 191 EYLDLWGSQVSNRGAA----VLKMFPR-LSFLNLAW-----TGVTKL-----PNISSLEC 235
             L+L G+ ++++  A     L   P  ++ L+L+          +L        + +  
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC 295
           LNL    +        +   L  +  +           +Y+        ++S        
Sbjct: 230 LNLCLNCL-----HGPSLENLKLLKDSLKHLQT-----VYL--DYDIVKNMSKEQCKALG 277

Query: 296 -FLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSN-TRFSSAGVGILAGH 349
                ++ +  +D +   I          ++  +       +L N     +         
Sbjct: 278 AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIED 337

Query: 350 LPN---LEILSLSGTQIDD 365
           L     L     +   + +
Sbjct: 338 LNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 29/263 (11%), Positives = 71/263 (26%), Gaps = 50/263 (19%)

Query: 92  LRSLNVADCRRVTSSALWALTGM-----TCLKELDLSRCVKVTDAGMKHLLSI-----ST 141
           +  L++      +S +              +  L+L     +       L+ I     + 
Sbjct: 111 ITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN 168

Query: 142 LEKLWLSETGLTADGIALLSSL-----QNLSVLDLGGLPVTDLVLRSL-----QVLTKLE 191
           +  L L    L +   A L+        +++ LDL    +       L      +   + 
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 192 YLDLWGSQVSNRG----AAVLKMFPRLSFLNLAWTGVTK------------LPNISSLEC 235
            L+L  + +          +      L  + L +  V               PNI  +  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC 295
           ++ +   I        +  P++   +   +   +      +    L F     +++    
Sbjct: 289 VDKNGKEI-----HPSHSIPISN-LIRELSGKADV---PSLLNQCLIFAQKHQTNIED-- 337

Query: 296 FLTQMKALEHLDLSSSMIGDDSV 318
            L     L     +   + +   
Sbjct: 338 -LNIPDELRESIQTCKPLLEHHH 359

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 43/262 (16%), Positives = 84/262 (32%), Gaps = 46/262 (17%)

Query: 296 FLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351
           F +    +  LDLS + +   S     +  A   A++ +LNLS           L   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 352 ----NLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGMYPSGQMNVFFSA 402
               N+  L+LSG  +   +   +         ++  +D+   D      S     F + 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 403 YCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN-HLERLNLEQTQ 461
              +   NL  +                  +G ++   L    L  +  ++  LNL    
Sbjct: 137 PASITSLNLRGN-----------------DLGIKSSDELI-QILAAIPANVNSLNLRGNN 178

Query: 462 VSDATLFPLSTF-----KELIHLSLRNASLTDVSLHQLSSL-----SKLTNLSIRDAVLT 511
           ++      L+ F       +  L L    L   S  +L+ +     + + +L++    L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 512 NSGL----GSFKPPRSLKLLDL 529
              L          + L+ + L
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYL 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 66/395 (16%), Positives = 117/395 (29%), Gaps = 100/395 (25%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           +    L L +  +        +S  +L  L+L    V+ +   +   L  L  L L    
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-- 89

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI 259
             NR    LK+ P   F  L           S+L  L++S   I  +L+           
Sbjct: 90  --NR----LKLIPLGVFTGL-----------SNLTKLDISENKIVILLDY---------- 122

Query: 260 SLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDD 316
                 F +            L  L+V +     +S   F + + +LE L L    +   
Sbjct: 123 -----MFQD---------LYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSI 167

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376
             E ++ +   L  L L +   ++         L  L++L +S     D          +
Sbjct: 168 PTEALSHLH-GLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 377 LKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436
           L  + I++ ++                                                 
Sbjct: 226 LTSLSITHCNLT------------------------------------------------ 237

Query: 437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 496
               +   A+++L +L  LNL    +S      L     L  + L    L  V  +    
Sbjct: 238 ---AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 497 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
           L+ L  L++    LT      F    +L+ L L  
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 50/284 (17%), Positives = 111/284 (39%), Gaps = 14/284 (4%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
                  L+EL+L+    V+        ++  L  L L    L    + + + L NL+ L
Sbjct: 51  EFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP- 228
           D+    +  L+    Q L  L+ L++  + +             L  L L    +T +P 
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

Query: 229 ----NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSF 283
               ++  L  L L +  I++I + + +    L  + ++   +++          +L + 
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TS 228

Query: 284 LDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSS 340
           L +++ +L+      +  +  L  L+LS + I   ++E         L+ + L   + + 
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI--STIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
                  G L  L +L++SG Q+     S    + +L+ + + +
Sbjct: 287 VEPYAFRG-LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 62/286 (21%), Positives = 108/286 (37%), Gaps = 42/286 (14%)

Query: 87  GAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTL 142
           GAF  L +L     R  R+    L   TG++ L +LD+S    V + D   + L +   L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN---L 130

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
           + L + +  L        S L +L  L L    +T +   +L  L  L  L L    ++ 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 203 RGAAVLKMFPRLSFLNLA-WTGVTKLPNIS----SLECLNLSNCTIDSILEGNENKAPLA 257
                 K   RL  L ++ W  +  +        +L  L++++C + ++           
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV----------- 239

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGD 315
                         A  +     L FL++S + +S      L ++  L+ + L    +  
Sbjct: 240 -----------PYLAVRH--LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-- 284

Query: 316 DSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
             VE  A  G   LR LN+S  + ++    +    + NLE L L  
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS-VGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 51/336 (15%), Positives = 97/336 (28%), Gaps = 98/336 (29%)

Query: 210 MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
           +      L+L    +  L      +   LE L L+   + ++                  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV------------------ 71

Query: 265 TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSV 318
               E  AF  +    L  L + +     +    F T +  L  LD+S     ++ D   
Sbjct: 72  ----EPGAFNNLFN--LRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVILLDYMF 124

Query: 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMP 375
           + +     NL++L + +           +G L +LE L+L     T I   A+S++    
Sbjct: 125 QDLY----NLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSHL---H 176

Query: 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
            L  + + + +I                                   +++          
Sbjct: 177 GLIVLRLRHLNI-----------------------------------NAIRDY------- 194

Query: 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 495
                 S   L  L  LE  +                   L  LS+ + +LT V    + 
Sbjct: 195 ------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN---LTSLSITHCNLTAVPYLAVR 245

Query: 496 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            L  L  L++    ++            L+ + L G
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 45/238 (18%), Positives = 74/238 (31%), Gaps = 59/238 (24%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
              LDL  + I   + +  A    +L  L L+    S+   G     L NL  L L   +
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNR 91

Query: 363 IDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFP 422
           +    +   + + +L  +DIS   I                                   
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIV---------------------------------- 117

Query: 423 SSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHL 479
                            +L     Q+L +L+ L +       +S      L++   L  L
Sbjct: 118 -----------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS---LEQL 157

Query: 480 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 537
           +L   +LT +    LS L  L  L +R   +      SFK    LK+L++     L  
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L  + +A+   VT   L  +     +K+L ++     T+     +  +S LE+L +    
Sbjct: 46  LTYITLANIN-VTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKD 99

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKM 210
           +T+D I  LS L +L++LD+      D +L  +  L K+  +DL     +++     LK 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKT 157

Query: 211 FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI 246
            P L  LN+ + GV     I     L  L   + TI   
Sbjct: 158 LPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 36/203 (17%), Positives = 67/203 (33%), Gaps = 51/203 (25%)

Query: 114 MTCLKELDLSRCVKVTD-AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLG 172
           M  L  + L+    VTD  G+++      ++ L ++    T      +S L NL  L + 
Sbjct: 43  MNSLTYITLANI-NVTDLTGIEYA---HNIKDLTINNIHAT--NYNPISGLSNLERLRIM 96

Query: 173 GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISS 232
           G  VT   + +L  LT L  LD+  S   +     +   P+++ ++L++     + +I  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--GAITDIMP 154

Query: 233 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292
           L+   L                                          L  L++    + 
Sbjct: 155 LK--TLPE----------------------------------------LKSLNIQFDGVH 172

Query: 293 RFCFLTQMKALEHLDLSSSMIGD 315
            +  +     L  L   S  IG 
Sbjct: 173 DYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 31/210 (14%), Positives = 75/210 (35%), Gaps = 60/210 (28%)

Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
           L+++ ++N +++    +     ++ L +++    +     ++ + +NL  L +     +S
Sbjct: 46  LTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YNPISGL-SNLERLRIMGKDVTS 102

Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS-NTDIKGMYPSGQMNVF 399
             +  L+G L +L +L +S +  DD  ++ ++ +P +  ID+S N  I            
Sbjct: 103 DKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT----------- 150

Query: 400 FSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 459
                                                      +  L+ L  L+ LN++ 
Sbjct: 151 ------------------------------------------DIMPLKTLPELKSLNIQF 168

Query: 460 TQVSDATLFPLSTFKELIHLSLRNASLTDV 489
             V D     +  F +L  L   + ++   
Sbjct: 169 DGVHDYR--GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 71/238 (29%)

Query: 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEI 355
           +  KA  +  L  S   + +   +     +L  + L+N   +      L G  +  N++ 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMN----SLTYITLANINVTD-----LTGIEYAHNIKD 70

Query: 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHA 415
           L+++     +   + +S + +L+ + I   D+                            
Sbjct: 71  LTINNIHATN--YNPISGLSNLERLRIMGKDVTS-------------------------- 102

Query: 416 YGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 475
                                      +  L  L  L  L++  +   D+ L  ++T  +
Sbjct: 103 -------------------------DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 476 LIHLSL-RNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 531
           +  + L  N ++TD+    L +L +L +L+I+   + +  G+  F     L  L    
Sbjct: 138 VNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDFP---KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 35/253 (13%), Positives = 76/253 (30%), Gaps = 79/253 (31%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           ST +       G ++      + + +L+ + L  + VTDL    ++    ++ L +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI 259
            +N                        +  +S+LE L +    + S              
Sbjct: 78  ATN---------------------YNPISGLSNLERLRIMGKDVTSD------------- 103

Query: 260 SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
                                            +   L+ + +L  LD+S S   D  + 
Sbjct: 104 ---------------------------------KIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 320 MVACVGANLRNLNLS-NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378
            +  +   + +++LS N   +   +  L   LP L+ L++    + D     +   P L 
Sbjct: 131 KINTL-PKVNSIDLSYNGAITD--IMPLKT-LPELKSLNIQFDGVHD--YRGIEDFPKLN 184

Query: 379 FIDISN---TDIK 388
            +   +      K
Sbjct: 185 QLYAFSQTIGGKK 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 61/379 (16%), Positives = 135/379 (35%), Gaps = 89/379 (23%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           ++++  + +    + +     ALL S + + +L+L  L + ++   +      ++ L + 
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE 251
            + +      V +  P L+ L L    ++ LP     N   L  L++SN  ++ I +   
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-- 159

Query: 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
                        TF           T+ L  L +S++ L+     + + +L H ++S +
Sbjct: 160 -------------TFQA---------TTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYN 196

Query: 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371
           ++   ++ +       +  L+ S+   +     +       L IL L    + D   +++
Sbjct: 197 LLSTLAIPI------AVEELDASHNSINV----VRGPVNVELTILKLQHNNLTD--TAWL 244

Query: 372 SMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ 431
              P L  +D+S  +++              + F+ +  L                    
Sbjct: 245 LNYPGLVEVDLSYNELE----------KIMYHPFVKMQRL-------------------- 274

Query: 432 QVGAETDLVLS---LTAL----QNLNHLERLNLEQTQVS--DATLFPLSTFKELIHLSLR 482
                  L +S   L AL    Q +  L+ L+L    +   +           L +L L 
Sbjct: 275 -----ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD---RLENLYLD 326

Query: 483 NASLTDVSLHQLSSLSKLT 501
           + S+  + L    +L  LT
Sbjct: 327 HNSIVTLKLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 48/278 (17%), Positives = 106/278 (38%), Gaps = 20/278 (7%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           A      +++L +     +         ++  L  L L    L++    +  +   L+ L
Sbjct: 88  AFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            +    +  +   + Q  T L+ L L  +++++     L + P L   N+++  ++ L  
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAI 203

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN- 288
             ++E L+ S+ +I+ +      +  L  + L     + +    L      L  +D+S  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE--LTILKLQHN-NLTDTAWLL--NYPGLVEVDLSYN 258

Query: 289 --SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 346
               +    F  +M+ LE L +S++ +   ++         L+ L+LS+       V   
Sbjct: 259 ELEKIMYHPF-VKMQRLERLYISNNRLVALNLYGQPI--PTLKVLDLSHNHLLH--VERN 313

Query: 347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
                 LE L L    I    +   S   +LK + +S+
Sbjct: 314 QPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 44/287 (15%), Positives = 104/287 (36%), Gaps = 27/287 (9%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
            L     ++ L+L+   ++ +          T++KL++    +      +  ++  L+VL
Sbjct: 64  LLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP- 228
            L    ++ L         KL  L +  + +        +    L  L L+   +T +  
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182

Query: 229 -NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT--TFINEREAFLYIETSLLSFLD 285
             I SL   N+S   + ++         + ++  +      +      +      L+ L 
Sbjct: 183 SLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RGPVNVE-----LTILK 232

Query: 286 VSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVG 344
           + +++L+   +L     L  +DLS + +  + +     V    L  L +SN R  +  + 
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVA--LN 288

Query: 345 ILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFIDISNTDIK 388
           +    +P L++L LS      ++            L+ + + +  I 
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQ----FDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 59/376 (15%), Positives = 115/376 (30%), Gaps = 97/376 (25%)

Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
           +L N  ++      +  L    L    ++E L+L   Q        ++     +F     
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--------IEEIDTYAFAYA-- 92

Query: 222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 281
                     +++ L +    I  +                   F N           LL
Sbjct: 93  ---------HTIQKLYMGFNAIRYLPPH---------------VFQN---------VPLL 119

Query: 282 SFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSVEMVACVGANLRNLNLSN 335
           + L +     SSL R  F      L  L +S+     I DD+ +       +L+NL LS+
Sbjct: 120 TVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATT----SLQNLQLSS 174

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQ 395
            R +     +    +P+L   ++S   +     S +++  +++ +D S+  I        
Sbjct: 175 NRLTH----VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN------- 218

Query: 396 MNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERL 455
                     + +  L L                        +L      L N   L  +
Sbjct: 219 ---VVRGPVNVELTILKLQ---------------------HNNLT-DTAWLLNYPGLVEV 253

Query: 456 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515
           +L   ++      P    + L  L + N  L  ++L+    +  L  L +    L +   
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVER 312

Query: 516 GSFKPPRSLKLLDLHG 531
              +    L+ L L  
Sbjct: 313 NQPQFD-RLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 27/256 (10%)

Query: 110 ALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167
                  L  L +S     ++ D   +   S   L+ L LS   LT   ++L+ SL + +
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTS---LQNLQLSSNRLTHVDLSLIPSLFHAN 192

Query: 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL 227
           V        +  +L +L +   +E LD   + ++     V      L+ L L    +T  
Sbjct: 193 V--------SYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT 241

Query: 228 P---NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETSLLSF 283
               N   L  ++LS   ++ I+     K   L ++ ++    +        I T  L  
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT--LKV 299

Query: 284 LDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
           LD+S++ L        Q   LE+L L  + I    +         L+NL LS+  +    
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH----TLKNLTLSHNDWDCNS 355

Query: 343 VGILAGHLPNLEILSL 358
           +  L  ++    +   
Sbjct: 356 LRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 29/250 (11%), Positives = 68/250 (27%), Gaps = 44/250 (17%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +D+    +        +   + +   +S +      ++      +  LNL++ +      
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDT 86

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
              A     ++ L +    I          +P L  + +   D+                
Sbjct: 87  YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------SLPRG 135

Query: 404 CFMIVYNL-FLHAYGYVIFPSSVLAG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 461
            F     L  L            ++   ++++  +T         Q    L+ L L   +
Sbjct: 136 IFHNTPKLTTLS-----------MSNNNLERIEDDT--------FQATTSLQNLQLSSNR 176

Query: 462 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 521
           ++      LS    L H ++    L+      L+    +  L      +           
Sbjct: 177 LTH---VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV-- 226

Query: 522 RSLKLLDLHG 531
             L +L L  
Sbjct: 227 -ELTILKLQH 235

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 72.6 bits (178), Expect = 5e-15
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 90  RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS----TLEKL 145
             +++++  D   + S     + G+  ++++ L +C  + D  ++ L  +     ++ ++
Sbjct: 61  YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM 119

Query: 146 WLSE-TGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDL 195
            +     +T  GI  L   +NL  L L  LP V +         T L  L+L
Sbjct: 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 58  SLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTC- 116
               + K+  +AI+    + + +    ++   +Y+  + +  C  +    L  L+ +   
Sbjct: 54  PTGPLDKYKIQAIDATD-SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 117 ---LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE-TGLTADGIALLSSLQNLSVLDL 171
              + E+++  C  VTD G+  L     L+ L+LS+  G+      + +   +L  L+L
Sbjct: 113 QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN-ASLTDVSLHQLSSLSK 499
           L    L     ++ ++   + +       +   + +  + L     + D  L +LS L  
Sbjct: 53  LPTGPLDKYK-IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN 111

Query: 500 ----LTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLT--EDAILQFCKMHPRIEV 552
               +  + I     +T+ G+ +    R+LK L L     +   E  +  F    P +E+
Sbjct: 112 LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 446 LQNLNHLERLNLEQ-TQVSDATLFPLSTFKE----LIHLSLRN-ASLTDVSLHQLSSLSK 499
           ++ L ++E++ L +   + D  L  LS  +     ++ + + +  ++TD  +  L     
Sbjct: 81  MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140

Query: 500 LTNLSIRD-AVLTNSGLGSFKPPRSLKLLDLH 530
           L  L + D   +            SL  L+L 
Sbjct: 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLP---NLEILSL 358
           ++ +D + S I     + +  +   +  + L          +  L+       ++  + +
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 359 SG-TQIDDYAISYMSMMPSLKFIDISN 384
                + D  I  +    +LK++ +S+
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSD 148

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFP----RLSFLNL 219
            +  +D     +  +    ++ L  +E + L     + +     L         +  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 220 AW------TGVTKLPNISSLECLNLSNCT 242
                    G+  L +  +L+ L LS+  
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLP 150

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 43/244 (17%)

Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216
           +     L N    +LG   VTDLV  S + L+ ++  +   S + +   A ++ F  L  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKE 67

Query: 217 LNLAWTGVTKLPNISS---LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+L+   ++ L  +     LE L+++   + ++  G  +                     
Sbjct: 68  LHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-NGIPSAC------------------- 107

Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                  LS L + N+ L     L  +K LE L + ++ +   S+ M+  + + L  L+L
Sbjct: 108 -------LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL--KSIVMLGFL-SKLEVLDL 157

Query: 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---MMPSLKFIDISNTDIKGM 390
                ++   G L   L  +  + L+G +  +  + Y     +  ++K  D        +
Sbjct: 158 HGNEITN--TGGLT-RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYI 214

Query: 391 YPSG 394
              G
Sbjct: 215 SNGG 218

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 44/304 (14%), Positives = 87/304 (28%), Gaps = 99/304 (32%)

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLA 262
                     NL    VT L +      ++  N  N  I S+  ++   N          
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTN---------- 64

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
                             L  L +S++ +S    L  +  LE L ++ + + + +     
Sbjct: 65  ------------------LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN----G 102

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
              A L  L L N          L  HL NLEILS+   ++    I  +  +  L+ +D+
Sbjct: 103 IPSACLSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDL 157

Query: 383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS 442
              +I                                                      +
Sbjct: 158 HGNEIT-----------------------------------------------------N 164

Query: 443 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL-SLRNASLTDVSLHQLSSLSKLT 501
              L  L  +  ++L   +  +    P+    EL    ++++     +S + +S+     
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCVN---EPVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221

Query: 502 NLSI 505
           +  +
Sbjct: 222 DGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 36/288 (12%), Positives = 82/288 (28%), Gaps = 90/288 (31%)

Query: 224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 283
           V   P +++    NL   ++  +     ++  L+                       +  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDL----VSQKELSG----------------------VQN 45

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
            +  NS++     +     L+ L LS + I D  +  +  +   L  L+++  R  +   
Sbjct: 46  FNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSPLKDL-TKLEELSVNRNRLKN--- 99

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
            +       L  L L   ++ D     +  + +L+ + I N  +K               
Sbjct: 100 -LNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK--------------- 141

Query: 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463
                                                 S+  L  L+ LE L+L   +++
Sbjct: 142 --------------------------------------SIVMLGFLSKLEVLDLHGNEIT 163

Query: 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511
           +     L+  K++  + L      +  +     L     +   D    
Sbjct: 164 N--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 67/207 (32%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
           AN    NL     +   +      L  ++  +   + I    ++ M    +LK + +S+ 
Sbjct: 19  ANAVKQNLGKQSVTD--LVSQK-ELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN 73

Query: 386 DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445
            I                                                       L+ 
Sbjct: 74  QIS-----------------------------------------------------DLSP 80

Query: 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 505
           L++L  LE L++ + ++ +  L  + +   L  L L N  L D     L  L  L  LSI
Sbjct: 81  LKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFLDNNELRDTD--SLIHLKNLEILSI 135

Query: 506 RDAVLTN-SGLGSFKPPRSLKLLDLHG 531
           R+  L +   LG       L++LDLHG
Sbjct: 136 RNNKLKSIVMLGFLS---KLEVLDLHG 159

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           +  F  L+ L+++  +    S L  L  +T L+EL ++R  ++ +    + +  + L +L
Sbjct: 59  MQFFTNLKELHLSHNQ---ISDLSPLKDLTKLEELSVNRN-RLKNL---NGIPSACLSRL 111

Query: 146 WLSETGLTADGIALLSSLQ---NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
           +L    L         SL    NL +L +    +    +  L  L+KLE LDL G++++N
Sbjct: 112 FLDNNELRD-----TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN 164

Query: 203 RGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSN 240
                L    ++++++L        P +     L ++N
Sbjct: 165 --TGGLTRLKKVNWIDLTGQKCVNEP-VKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170
           L  +  L+ L +    K+    +  L  +S LE L L    +T      L+ L+ ++ +D
Sbjct: 124 LIHLKNLEILSIRNN-KLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWID 178

Query: 171 LGGLPVTDLVLRSLQVLTKLEYL-DLWGSQVSN 202
           L G    +  ++    L     + D  G  +S 
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWISP 211

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 442 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 501
            +     L +  + NL +  V+D  L        + + +  N+++  ++   +   + L 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLK 66

Query: 502 NLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 531
            L +    +++ S L        L+ L ++ 
Sbjct: 67  ELHLSHNQISDLSPLKDLT---KLEELSVNR 94

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGL 515
              T ++   +FP       +  +L   S+TD+       LS + N +  ++ + + +G+
Sbjct: 4   QRPTPINQ--VFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAGM 59

Query: 516 GSFKPPRSLKLLDLHG 531
             F    +LK L L  
Sbjct: 60  QFFT---NLKELHLSH 72

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 6e-15
 Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 23/303 (7%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L +FR +  LN+ D + +     +A      +++L +     +         ++  L  L
Sbjct: 71  LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            L    L++    +  +   L+ L +    +  +   + Q  T L+ L L     SNR  
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL----SSNRLT 184

Query: 206 AV-LKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
            V L + P L   N+++  ++ L    ++E L+ S+ +I+ +      +  L  + L   
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHN 242

Query: 265 TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 321
             + +      +    L  +D+S      +    F  +M+ LE L +S++ +   ++   
Sbjct: 243 N-LTDTAWL--LNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALNLYGQ 298

Query: 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381
                 L+ L+LS+       V         LE L L    I    +   S   +LK + 
Sbjct: 299 PI--PTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLT 351

Query: 382 ISN 384
           +S+
Sbjct: 352 LSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 6e-14
 Identities = 61/379 (16%), Positives = 135/379 (35%), Gaps = 89/379 (23%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           ++++  + +    + +     ALL S + + +L+L  L + ++   +      ++ L + 
Sbjct: 48  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE 251
            + +      V +  P L+ L L    ++ LP     N   L  L++SN  ++ I +   
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-- 165

Query: 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
                        TF           T+ L  L +S++ L+     + + +L H ++S +
Sbjct: 166 -------------TFQA---------TTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYN 202

Query: 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371
           ++   ++ +       +  L+ S+   +     +       L IL L    + D   +++
Sbjct: 203 LLSTLAIPI------AVEELDASHNSINV----VRGPVNVELTILKLQHNNLTD--TAWL 250

Query: 372 SMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ 431
              P L  +D+S  +++              + F+ +  L                    
Sbjct: 251 LNYPGLVEVDLSYNELE----------KIMYHPFVKMQRL-------------------- 280

Query: 432 QVGAETDLVLS---LTAL----QNLNHLERLNLEQTQVS--DATLFPLSTFKELIHLSLR 482
                  L +S   L AL    Q +  L+ L+L    +   +           L +L L 
Sbjct: 281 -----ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD---RLENLYLD 332

Query: 483 NASLTDVSLHQLSSLSKLT 501
           + S+  + L    +L  LT
Sbjct: 333 HNSIVTLKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 59/376 (15%), Positives = 115/376 (30%), Gaps = 97/376 (25%)

Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
           +L N  ++      +  L    L    ++E L+L   Q        ++     +F     
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--------IEEIDTYAFAYA-- 98

Query: 222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 281
                     +++ L +    I  +                   F N           LL
Sbjct: 99  ---------HTIQKLYMGFNAIRYLPPH---------------VFQN---------VPLL 125

Query: 282 SFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSVEMVACVGANLRNLNLSN 335
           + L +     SSL R  F      L  L +S+     I DD+ +       +L+NL LS+
Sbjct: 126 TVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATT----SLQNLQLSS 180

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQ 395
            R +     +    +P+L   ++S   +     S +++  +++ +D S+  I        
Sbjct: 181 NRLTH----VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN------- 224

Query: 396 MNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERL 455
                     + +  L L                        +L      L N   L  +
Sbjct: 225 ---VVRGPVNVELTILKLQ---------------------HNNLT-DTAWLLNYPGLVEV 259

Query: 456 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515
           +L   ++      P    + L  L + N  L  ++L+    +  L  L +    L +   
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVER 318

Query: 516 GSFKPPRSLKLLDLHG 531
              +    L+ L L  
Sbjct: 319 NQPQFD-RLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 44/262 (16%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +D+    +        +   + +   +S +      ++      +  LNL++ +      
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDT 92

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
              A     ++ L +    I          +P L  + +   D+                
Sbjct: 93  YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------SLPRG 141

Query: 404 CFMIVYNL-FLHAYGYVIFPSSVLAG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 461
            F     L  L            ++   ++++  +T         Q    L+ L L   +
Sbjct: 142 IFHNTPKLTTLS-----------MSNNNLERIEDDT--------FQATTSLQNLQLSSNR 182

Query: 462 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 521
           ++      LS    L H ++    L+      L+    +  L      +           
Sbjct: 183 LTH---VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--- 231

Query: 522 RSLKLLDLHGGWLLTEDAILQF 543
             L +L L    L     +L +
Sbjct: 232 VELTILKLQHNNLTDTAWLLNY 253

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 28/219 (12%)

Query: 110 ALTGMTCLKELDLSRC--VKVTDAGMKHLLSI-------------STLEKLWLSETGLTA 154
                T L+ L LS      V  + +  L                  +E+L  S   +  
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225

Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 214
                      L++L L    +TD     L     L  +DL  +++            RL
Sbjct: 226 ---VRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 215 SFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270
             L ++   +  L      I +L+ L+LS+  +  +         L  + L   + +  +
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS 309
            +        L  L +S++           + +    + 
Sbjct: 341 LSTH----HTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 95/459 (20%), Positives = 162/459 (35%), Gaps = 81/459 (17%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLE 143
           LG+   L+ LNV+         +     +  L+ LDLS          G         L+
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDL------GGLPVTDLVLRSLQVLTKLEYLDLWG 197
            L +S   ++  G   +S   NL  LD+       G+P        L   + L++LD+ G
Sbjct: 182 HLAISGNKIS--GDVDVSRCVNLEFLDVSSNNFSTGIP-------FLGDCSALQHLDISG 232

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVT-KLP--NISSLECLNLSNC----TIDSILEGN 250
           +++S   +  +     L  LN++       +P   + SL+ L+L+       I   L G 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSL-----LSFLDVSNSSLSR---FCFLTQMKA 302
            +   L  + L+G  F         +         L  L +S+++ S       L +M+ 
Sbjct: 293 CDT--LTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 303 LEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSL 358
           L+ LDLS     G+    +     A+L  L+LS+  FS  G     +       L+ L L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLS-ASLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYL 401

Query: 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGY 418
                       +S    L  + +S   + G  PS              +  L       
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS----------SLGSLSKLR-----D 446

Query: 419 VIFPSSVLAGFI-QQVGAETDL-VLSL----------TALQNLNHLERLNLEQTQVSDAT 466
           +    ++L G I Q++     L  L L          + L N  +L  ++L   +++   
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE- 505

Query: 467 LFP--LSTFKELIHLSLRNASLTD---VSLHQLSSLSKL 500
             P  +   + L  L L N S +      L    SL  L
Sbjct: 506 -IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 4e-12
 Identities = 69/307 (22%), Positives = 117/307 (38%), Gaps = 62/307 (20%)

Query: 112 TGMTC----LKELDLSRCVKVTDAGM--KHLLSISTLEKLWLSETGLTADGIALLSSLQN 165
            G+TC    +  +DLS              LLS++ LE L+LS + +    ++      +
Sbjct: 43  DGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSAS 101

Query: 166 LSVLDL------GGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA-VLKMFPRLSFLN 218
           L+ LDL      G +      L SL   + L++L++  + +   G          L  L+
Sbjct: 102 LTSLDLSRNSLSGPVTT----LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 219 LAW--------TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270
           L+          G         L+ L +S       + G+        + ++        
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNK----ISGD--------VDVSRCVN---- 201

Query: 271 EAFLYIETSLLSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANL 328
                     L FLDVS+++ S    FL    AL+HLD+S + + GD S  +  C    L
Sbjct: 202 ----------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT--EL 249

Query: 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI--SYMSMMPSLKFIDISNTD 386
           + LN+S+ +F      I    L +L+ LSL+  +     I         +L  +D+S   
Sbjct: 250 KLLNISSNQFVGP---IPPLPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNH 305

Query: 387 IKGMYPS 393
             G  P 
Sbjct: 306 FYGAVPP 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 8e-10
 Identities = 88/447 (19%), Positives = 157/447 (35%), Gaps = 59/447 (13%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L S  +       SS+L +LTG   L+ L LS      +  +      ++L  L LS   
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTG---LESLFLSNSH--INGSVSGFKCSASLTSLDLSRNS 111

Query: 152 LTAD--GIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVSN---RGA 205
           L+     +  L S   L  L++    +      S  + L  LE LDL  + +S     G 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 206 AVLKMFPRLSFLNLAWTGVT-KLP--NISSLECLNLSNC----TIDSILEGNENKAPLAK 258
            +      L  L ++   ++  +      +LE L++S+      I  +  G+ +   L  
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL--GDCSA--LQH 227

Query: 259 ISLAGTTFINEREAFLYIETSL-----LSFLDVSNSSLSRFCFLTQMKALEHLDLSS-SM 312
           + ++G     +         ++     L  L++S++          +K+L++L L+    
Sbjct: 228 LDISGNKLSGD------FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281

Query: 313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA--GHLPNLEILSLSGTQIDDYAI-- 368
            G+    +       L  L+LS   F      +    G    LE L+LS        +  
Sbjct: 282 TGEIPDFLSGAC-DTLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFSG-ELPM 336

Query: 369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAG 428
             +  M  LK +D+S  +  G  P    N+  S     +  N F    G +    ++   
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF---SGPI--LPNLCQN 391

Query: 429 FIQQVGAETDLVLS---LT-----ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 480
               +    +L L     T      L N + L  L+L    +S      L +  +L  L 
Sbjct: 392 PKNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 481 LRNASLTDVSLHQLSSLSKLTNLSIRD 507
           L    L      +L  +  L  L +  
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 56/273 (20%), Positives = 89/273 (32%), Gaps = 46/273 (16%)

Query: 281 LSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMIGD---DSVEMVACVGANLRNLNLSNT 336
           L  L +SNS ++          +L  LDLS + +         + +C  + L+ LN+S+ 
Sbjct: 79  LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC--SGLKFLNVSSN 136

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGMYPS 393
                G       L +LE+L LS   I                LK + IS   I G    
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

Query: 394 GQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL-VLSL--------- 443
            +              NL      ++   S+  +  I  +G  + L  L +         
Sbjct: 197 SRCV------------NL-----EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 444 -TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLT 501
             A+     L+ LN+   Q       P    K L +LSL     T ++      +   LT
Sbjct: 240 SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 502 NLSIRDAVLTNS---GLGSFKPPRSLKLLDLHG 531
            L +       +     GS      L+ L L  
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCS---LLESLALSS 327

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV--SLHQLSSLSKLTN 502
           +L +L  LE L L  + ++  ++        L  L L   SL+    +L  L S S L  
Sbjct: 72  SLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 503 LSIRDAVLTNSG-LGSFKPPRSLKLLDLHG 531
           L++    L   G +       SL++LDL  
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 54/303 (17%), Positives = 98/303 (32%), Gaps = 61/303 (20%)

Query: 160 LSSLQNLSVLDL------GGLPVTDLVLRSLQVL------------------TKLEYLDL 195
           L SL  L  L L      G +P   + +++L+ L                  T L ++ L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 196 WGSQVSNRGAAVLKMFPRLSFLNLAW---TGV--TKLPNISSLECLNLS----------- 239
             ++++      +     L+ L L+    +G    +L +  SL  L+L+           
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

Query: 240 --NCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL---------LSFLDVSN 288
               +          K  +   +       +     L  +             +  ++++
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 289 SSLSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI 345
                          ++  LD+S   + G    E+ +     L  LNL +   S     I
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY--LFILNLGHNDISG---SI 672

Query: 346 LA--GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
               G L  L IL LS  ++D      MS +  L  ID+SN ++ G  P       F   
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732

Query: 404 CFM 406
            F+
Sbjct: 733 KFL 735

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 62/408 (15%), Positives = 120/408 (29%), Gaps = 34/408 (8%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
            + +  +   ++++ L     +L  S  N+  LDL G P++ +    L   TKLE L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPL 256
            + +       L+    L  L+L    V +L    S+E L+ +N  I  +          
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG--K 122

Query: 257 AKISLAG---TTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS 310
             I LA    T   +  E       S + +LD+      +++          LEHL+L  
Sbjct: 123 KNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370
           + I    V+        L+ L+LS+ + +  G          +  +SL   ++     + 
Sbjct: 179 NFI--YDVKGQVVFA-KLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKA- 232

Query: 371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFI 430
           +    +L+  D+           G +  FFS      V  +       +   +       
Sbjct: 233 LRFSQNLEHFDLRGNGFH----CGTLRDFFSK--NQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 431 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK-------ELIHLSLRN 483
                              + L  L  ++  +           +           +    
Sbjct: 287 TLGH-YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
                V             L  +   L        +    L       
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 55/402 (13%), Positives = 121/402 (30%), Gaps = 44/402 (10%)

Query: 159 LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           +  +     +  +    +   +    Q    ++ LDL G+ +S   AA L  F +L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 219 LAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY 275
           L+   + +  ++   S+L  L+L+N  +  +L G      +  +  A         +   
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRVSCSRG- 119

Query: 276 IETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                   + ++N+ ++            +++LDL  + I   +   +A     L +LNL
Sbjct: 120 ---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS 393
                      ++      L+ L LS  ++             + +I + N  +  +  +
Sbjct: 177 QYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA 232

Query: 394 GQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGF-----IQQVGAETDLVLSLTALQ 447
                           NL      G      ++   F     +Q V  +T   L+    +
Sbjct: 233 -----------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-------KL 500
                   +       D    P      LI L  +  +L      +   L        + 
Sbjct: 282 ECTVPTLGHYGAYCCED---LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 501 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ 542
             +                  ++   L+     L  + +  +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 62/422 (14%), Positives = 118/422 (27%), Gaps = 46/422 (10%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
            +   V D   +  +          +KELDLS    ++      L   + LE L LS   
Sbjct: 12  YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV 69

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           L       L SL  L  LDL         ++ L V   +E L    + +S    +     
Sbjct: 70  LY--ETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCS---RG 119

Query: 212 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
                + LA   +T L        S ++ L+L    ID++                    
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------------------- 159

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326
                       + L  L++  + +           L+ LDLSS+ +     E  +   A
Sbjct: 160 --NFAELAASSDT-LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA--A 214

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNT 385
            +  ++L N +       +      NLE   L G          + S    ++ +     
Sbjct: 215 GVTWISLRNNKLVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 386 DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445
                    +  V    +            +   +         +          L    
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE-CE 331

Query: 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 505
            +N      ++  + Q            +  I L  +  +L +   +   + ++L     
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

Query: 506 RD 507
           + 
Sbjct: 392 QA 393

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 45/301 (14%), Positives = 94/301 (31%), Gaps = 45/301 (14%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS----RCVKVTDAGMKHL----L 137
               + L  + + +C  +T      L  +  L+ L+++           A    L     
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 138 SISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           +   ++  ++    L      A L  +  L +LD     V    L +     KL  L L 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLD 603

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGN 250
            +Q+            ++  L  +   +  +P      ++  +  ++ S   I S     
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN- 662

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308
                    S+     IN             S + +S + + +F          +  + L
Sbjct: 663 ------ISCSMDDYKGIN------------ASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 309 SS---SMIGDDSVEMVACVGANLRNL---NLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
           S+   + I ++S++       N   L   +L   + +S      A  LP L  + +S   
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 363 I 363
            
Sbjct: 765 F 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 60/458 (13%), Positives = 128/458 (27%), Gaps = 76/458 (16%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           A+  +T L+ +  +           +       E           +     S+L++L+ +
Sbjct: 443 AIQRLTKLQIIYFANS------PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS---------NRGAAVLKMFPRLSFLNLA 220
           +L   P    +   L  L +L+ L++  ++            R A      P++    + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 221 WTGVTKLP------NISSLECLNLSNCTIDSI--LEGNENKAPLAKISLAG---TTFINE 269
           +  + + P       +  L  L+  +  +  +     N     L  + L          +
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK---LTDLKLDYNQIEEIPED 613

Query: 270 REAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLS----SSMIGDDSVEMVA 322
                   T  +  L  S+     +        +  +  +D S     S   + S  M  
Sbjct: 614 ----FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-------YAISYMSMMP 375
             G N   + LS          +       +  + LS   +                   
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
            L  ID+    +  +    +           + YN F        FP+  L         
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS------FPTQPL--------- 773

Query: 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQ 493
                 + + L+      + + E  ++     +P  ++T   LI L + +  +  V    
Sbjct: 774 ------NSSQLKAFGIRHQRDAEGNRIL--RQWPTGITTCPSLIQLQIGSNDIRKVD--- 822

Query: 494 LSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
                +L  L I D    +  + S  P     +  L  
Sbjct: 823 EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 7e-11
 Identities = 52/460 (11%), Positives = 127/460 (27%), Gaps = 79/460 (17%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           +G    L+ L+        S  L+    +T     +  +           L     L   
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL------VLRSLQVLTKLEYLDLWGSQ 199
            L +  +       +  ++  S + L    + +L      + +++Q LTKL+ +    S 
Sbjct: 402 DLLQDAIN--RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAK 258
            +    AV        +            N+  L  + L NC   + L       P L  
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV 318
           +++A     N            +S   +                ++   +  + + +   
Sbjct: 520 LNIAC----N----------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378
                    L  L+  + +     +    G    L  L L   QI++    + +    ++
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRH--LEAF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETD 438
            +  S+  +K                                 P+   A           
Sbjct: 623 GLGFSHNKLKY-------------------------------IPNIFNAK---------- 641

Query: 439 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 498
              S+  + +++      +     + +             ++L    +        ++ S
Sbjct: 642 ---SVYVMGSVD-FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 499 KLTNLSIRDAVLTN-------SGLGSFKPPRSLKLLDLHG 531
            ++ + + + ++T+          G++K    L  +DL  
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 46/379 (12%), Positives = 106/379 (27%), Gaps = 76/379 (20%)

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
           L +   ++ L L G      V  ++  LT+L+ L       +  G               
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 220 AWTGVTKLPN---ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYI 276
               +        +   + LNLS+   D+I    E         +   + I+ ++  +  
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM------KPIKKDSRISLKDTQIGN 432

Query: 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
            T+ ++F+  +         + ++  L+ +  ++S    D++ +      +  + N    
Sbjct: 433 LTNRITFISKA---------IQRLTKLQIIYFANSPFTYDNIAV------DWEDANSDYA 477

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQM 396
           +           +L +L  + L           ++  +P L+ ++I+             
Sbjct: 478 KQYENEELSW-SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA------------- 523

Query: 397 NVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL----NHL 452
                        N                A          D   +   +Q      N+L
Sbjct: 524 ------------CNRG-----------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512
           E      +         L    +L  L   +  +    L    +  KLT+L +    +  
Sbjct: 561 EEFPASAS---------LQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE 609

Query: 513 SGLGSFKPPRSLKLLDLHG 531
                      ++ L    
Sbjct: 610 IPEDFCAFTDQVEGLGFSH 628

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 57/401 (14%), Positives = 117/401 (29%), Gaps = 90/401 (22%)

Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 214
           D  AL +  + L   +      T             + LD+WG Q        L    R+
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV----DLDNNGRV 325

Query: 215 SFLNLAWTGVTKLP-----NISSLECLNLSNC--TIDSILEGNENKAPLAKISLAGTTFI 267
           + L+LA  G           ++ L+ L+      T+   L G+E   P           +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 268 NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS-------VEM 320
           + ++ FL  +  L +  D+   +++R   +  +K    + L  + IG+ +         +
Sbjct: 386 HYKKMFLDYDQRL-NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380
                  L+ +  +N+ F+   + +      + E  +    +  +      S +  L  +
Sbjct: 445 QRLT--KLQIIYFANSPFTYDNIAV------DWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV 440
           ++ N       P                                                
Sbjct: 497 ELYNCPNMTQLPD----------------------------------------------- 509

Query: 441 LSLTALQNLNHLERLNLEQTQVSDATLFP---------LSTFKELIHLSLRNASLTDV-S 490
                L +L  L+ LN+   +   A               T  ++    +   +L +  +
Sbjct: 510 ----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 491 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
              L  + KL  L      + +  L +F     L  L L  
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDY 604

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 59/293 (20%)

Query: 93  RSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI-----STLEKLWL 147
             L+         +  ++   ++ L++L+L+   ++T      + ++       L+++ L
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNL 108

Query: 148 SETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSL-QVL----TKLEYLDLWGSQVS 201
           +   L   G+  LL        L L    +     + L  +L     ++  L L  + ++
Sbjct: 109 ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISL 261
             G AVL               +  L   +S+  L+L +  +     G+E    LA    
Sbjct: 169 AAGVAVL---------------MEGLAGNTSVTHLSLLHTGL-----GDEGLELLAAQLD 208

Query: 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC------FLTQMKALEHLDLSSSMIGD 315
                              L  L+V+ +               +  +LE L L  + +  
Sbjct: 209 RNRQ---------------LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253

Query: 316 DSVEMVACVGANLRN------LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
           +  +++  +G                T  S     IL+    NL     +  Q
Sbjct: 254 EGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQ 306

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 52/285 (18%), Positives = 88/285 (30%), Gaps = 52/285 (18%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI-----STLEKLW 146
           L  +N+A C+   +     L      ++L L     +     K L  +       +  L 
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLR 161

Query: 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG-- 204
           LS   LTA G+A+L                       L   T + +L L  + + + G  
Sbjct: 162 LSNNPLTAAGVAVLME--------------------GLAGNTSVTHLSLLHTGLGDEGLE 201

Query: 205 --AAVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTID-----SILE 248
             AA L    +L  LN+A+ G                 SLE L+L    +       + +
Sbjct: 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261

Query: 249 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308
                   A++ ++ T      E +      +LS +  + +S  R   + +   L   DL
Sbjct: 262 LGGAAEGGARVVVSLTEGTAVSEYWS----VILSEVQRNLNSWDRA-RVQRHLELLLRDL 316

Query: 309 SSSMIGDDSVEMVAC---VGANLRNLNLSNTRFSSAGVGILAGHL 350
             S     +    A    V   +R L        S          
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQF 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 23/177 (12%), Positives = 57/177 (32%), Gaps = 16/177 (9%)

Query: 227 LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTF-INEREAFLYIETSL---- 280
              I +L+ L  +      + + G +   P   +      +    +     + +SL    
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLN 78

Query: 281 LSFLDVSNSSLSRFCFLTQM--KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
           L+ + ++    +    +      AL+ ++L+S  +    +  +  V    R L L     
Sbjct: 79  LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138

Query: 339 SSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDI 387
                  L   L      +  L LS   +    ++ +        S+  + + +T +
Sbjct: 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 22/255 (8%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
            + +  +   ++++ L     +L  S  N+  LDL G P++ +    L   TKLE L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI-LEGNENKAP 255
            + +       L+    L  L+L    V +L    S+E L+ +N  I  +     +    
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG--- 121

Query: 256 LAKISLAG---TTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLS 309
              I LA    T   +  E       S + +LD+      +++          LEHL+L 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
            + I    V+      A L+ L+LS+ + +  G          +  +SL   ++     +
Sbjct: 178 YNFI--YDVKGQVVF-AKLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKA 232

Query: 370 YMSMMPSLKFIDISN 384
            +    +L+  D+  
Sbjct: 233 -LRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 36/229 (15%)

Query: 159 LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           +  +     +  +    +   +    Q    ++ LDL G+ +S   AA L  F +L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 219 LAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY 275
           L+   + +  ++   S+L  L+L+N  +  +L G                          
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS------------------------ 100

Query: 276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
                +  L  +N+++SR       +  +++ L+++ I         C  + ++ L+L  
Sbjct: 101 -----IETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKL 153

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
               +     LA     LE L+L    I D  +    +   LK +D+S+
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSS 200

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 24/209 (11%), Positives = 64/209 (30%), Gaps = 45/209 (21%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
             +   ++++    A   +      N++ L LSG  +   + + ++    L+ +++S+  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 387 IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS---L 443
           +        ++             L                           L L+   +
Sbjct: 70  LYETLDLESLS------------TL-------------------------RTLDLNNNYV 92

Query: 444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 503
             L     +E L+     +S       S  +   ++ L N  +T +        S++  L
Sbjct: 93  QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 504 SIRDAVLTN-SGLGSFKPPRSLKLLDLHG 531
            ++   +   +         +L+ L+L  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQY 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 27/277 (9%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
            +   V D   +  +          +KELDLS    ++      L   + LE L LS   
Sbjct: 12  YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV 69

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           L       L SL  L  LDL         ++ L V   +E L    + +S    +     
Sbjct: 70  LY--ETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCS---RG 119

Query: 212 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP--LAKISLAGT 264
                + LA   +T L        S ++ L+L    ID++       +   L  ++L   
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 265 TFIN-EREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVA 322
              + + +       + L  LD+S++ L+           +  + L ++ +      +  
Sbjct: 180 FIYDVKGQVVF----AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
               NL + +L    F    +         ++ ++  
Sbjct: 236 S--QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 44/267 (16%)

Query: 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSN 335
           +      V++SSL +           ++ LDLS + +    +          L  LNLS+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSS 67

Query: 336 TRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG 394
                     L    L  L  L L+   +       + + PS++ +  +N +I       
Sbjct: 68  NVLYE----TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS------ 112

Query: 395 QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS---LTALQ---- 447
                 S        N++L      +          +       L L    +  +     
Sbjct: 113 ----RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV----QYLDLKLNEIDTVNFAEL 164

Query: 448 --NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 505
             + + LE LNL+   +    +     F +L  L L +  L  +   +  S + +T +S+
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISL 221

Query: 506 RDAVLTNSGL-GSFKPPRSLKLLDLHG 531
           R+  L    +  + +  ++L+  DL G
Sbjct: 222 RNNKLVL--IEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 447 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 506
           QN N  +   +  + +  A      +   +  L L    L+ +S   L+  +KL  L++ 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 507 DAVLTNSGLGSFKPPRSLKLLDLHG 531
             VL        +   +L+ LDL+ 
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNN 89

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 51/305 (16%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC----VKVTDAGMKHLLSIST 141
               + L  + V +C  +T    + L  +  ++ ++++       +      + L     
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 142 ---LEKLWLSETGLTADGI-ALLSSLQNLSVLDLG-----GLPVTDLVLRSLQVLTKLEY 192
              ++ +++    L    +   L  ++ L +L+       G         +     KL  
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL------PAFGSEIKLAS 357

Query: 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSI 246
           L+L  +Q++   A       ++  L+ A   +  +P      ++S +  ++ S   I S+
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE 304
              N +                            +S +++SN+ +S+F     +    L 
Sbjct: 418 DGKNFDPLDPTPFKG-----------------INVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 305 HLDLSSSMIGDDSVEMVACVGA------NLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358
            ++L  +M+ +     +            L +++L   + +       A  LP L  + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 359 SGTQI 363
           S    
Sbjct: 521 SYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 55/457 (12%), Positives = 137/457 (29%), Gaps = 72/457 (15%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           A+  +T L++  +          +         E     +T           +L++L+ +
Sbjct: 201 AVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTE-----DLKWDNLKDLTDV 254

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWG--------SQVSNRGAAVLKMFPRLSFLNLAW 221
           ++   P    +   L+ L +++ +++           +   +  A   +  ++  + + +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 222 TGVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAG---TTFINEREA 272
             +   P       +  L  L      ++  L    ++  LA ++LA    T        
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN--- 371

Query: 273 FLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLS----SSMIGDDSVEMVACVG 325
                T  +  L  ++     +        +  +  +D S     S+ G +   +     
Sbjct: 372 -FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 326 A--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-------YAISYMSMMPS 376
              N+ ++NLSN + S     +       L  ++L G  + +                  
Sbjct: 431 KGINVSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 377 LKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436
           L  ID+    +  +    +           + YN F        FP+  L          
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF------SKFPTQPL---------- 533

Query: 437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQL 494
                + + L+      + + +  +      +P  ++    L  L + +  +  V+    
Sbjct: 534 -----NSSTLKGFGIRNQRDAQGNRTL--REWPEGITLCPSLTQLQIGSNDIRKVN---E 583

Query: 495 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
                ++ L I+D    +  L    P     +  L  
Sbjct: 584 KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 43/337 (12%), Positives = 98/337 (29%), Gaps = 59/337 (17%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI------ 139
                 ++ + +      T     +L  M  L  L+              L         
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN---------QLEGKLPAFGS 351

Query: 140 -STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV-LRSLQVLTKLEYLDLWG 197
              L  L L+   +T          + +  L      +  +  +   + ++ +  +D   
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 198 SQVSNRGAAVLKMFP-------RLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS 245
           +++ +                  +S +NL+   ++K P       S L  +NL    +  
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKA 302
           I + +         +                   LL+ +D+     + LS     T +  
Sbjct: 472 IPKNSLKDENENFKNT-----------------YLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILA---GHLPNLEILS 357
           L  +DLS +       + +      L+   + N R +     +          P+L  L 
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSS--TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG 394
           +    I    ++   + P++  +DI +     +  S 
Sbjct: 573 IGSNDIRK--VN-EKITPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 59/458 (12%), Positives = 131/458 (28%), Gaps = 76/458 (16%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALW---ALTGMTCLKELDLSRC----VKVTDAGMKHLLS 138
           +G    L  L +       +  L+    ++     ++    R       V     +    
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLD--LGGLPVTDLVLRSLQVLTKLEYLDLW 196
           +         +         +      +  L   +  +       +++  LTKL    + 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS------KAVMRLTKLRQFYMG 214

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI-----DSI----- 246
            S                 +     T   K  N+  L  + + NC         +     
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 247 -----LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLT 298
                +  N        IS        +  A   +   +   + +  ++L  F     L 
Sbjct: 275 MQLINVACNRG------ISGEQLKDDWQALADAPVGEKI-QIIYIGYNNLKTFPVETSLQ 327

Query: 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358
           +MK L  L+   + +        + +   L +LNL+  + +        G    +E LS 
Sbjct: 328 KMKKLGMLECLYNQLEGKLPAFGSEI--KLASLNLAYNQITEIPANFC-GFTEQVENLSF 384

Query: 359 SGTQIDDYAISY-MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYG 417
           +  ++      +    +  +  ID S  +I  +       +  + +  + V ++ L    
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS--- 441

Query: 418 YVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFP----L 470
                ++ ++ F +++                + L  +NL     T++   +L       
Sbjct: 442 -----NNQISKFPKEL------------FSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 471 STFKELIHLSLRNASLT----DVSLHQLSSLSKLTNLS 504
                L  + LR   LT    D     L  L  + +LS
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI-DLS 521

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 55/446 (12%), Positives = 127/446 (28%), Gaps = 75/446 (16%)

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG----LPVTDLVLRSLQVLTKLE 191
           L S   +  L L   G +      +  L  L VL LG     +       + +      E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE 251
                           +   PR  F +L    +   P   S++  +      D+ +    
Sbjct: 137 QKQKMRMHYQK---TFVDYDPREDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLS 192

Query: 252 NKAP-----------LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
           N              L +  +  + F+ E     +   +           L        +
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK----WDNL 248

Query: 301 KALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH-------LPN 352
           K L  +++ +   +      + A     ++ +N++  R  S                   
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 353 LEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC---FMIV 408
           ++I+ +    +  + + + +  M  L  ++     ++G  P+     F S        + 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-----FGSEIKLASLNLA 361

Query: 409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS---------LTALQNLNHLERLNLEQ 459
           YN            + + A F        +L  +         +   ++++ +  ++   
Sbjct: 362 YNQI----------TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 460 ---TQVSDATLFPLST----FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD----- 507
                V      PL         +  ++L N  ++       S+ S L+++++       
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 508 --AVLTNSGLGSFKPPRSLKLLDLHG 531
                      +FK    L  +DL  
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRF 497

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 49/255 (19%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           +   +  L+ L LSR   +    +     ++ L  L L +  LT         L  L  L
Sbjct: 83  SFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L   P+  +   +   +  L  LDL       R    L      +F  L          
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGE---LKR----LSYISEGAFEGL---------- 184

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN- 288
            S+L  LNL+ C +  I                                  L  LD+S  
Sbjct: 185 -SNLRYLNLAMCNLREI-----------------PNLTP---------LIKLDELDLSGN 217

Query: 289 --SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGI 345
             S++    F   +  L+ L +  S I    +E  A     +L  +NL++   +     +
Sbjct: 218 HLSAIRPGSF-QGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 346 LAGHLPNLEILSLSG 360
               L +LE + L  
Sbjct: 275 FT-PLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           +    L L E  +    +     L++L +L L    +  + + +   L  L  L+L+   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF--- 120

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAK 258
             NR    L   P  +F+ L           S L+ L L N  I+SI     N+ P L +
Sbjct: 121 -DNR----LTTIPNGAFVYL-----------SKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 259 ISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS---SMI 313
           + L     ++     AF  +    L +L+++  +L     LT +  L+ LDLS    S I
Sbjct: 165 LDLGELKRLSYISEGAFEGLSN--LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
              S + +     +L+ L +  ++            L +L  ++L+   +        + 
Sbjct: 223 RPGSFQGL----MHLQKLWMIQSQIQVIERNAFDN-LQSLVEINLAHNNLTLLPHDLFTP 277

Query: 374 MPSLKFIDISN 384
           +  L+ I + +
Sbjct: 278 LHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 9/161 (5%)

Query: 87  GAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144
           GAF YL  L     R   + S   +A   +  L+ LDL    +++         +S L  
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
           L L+   L    I  L+ L  L  LDL G  ++ +   S Q L  L+ L +  SQ+    
Sbjct: 190 LNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSN 240
                    L  +NLA   +T LP      +  LE ++L +
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 48/261 (18%), Positives = 86/261 (32%), Gaps = 48/261 (18%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
              L++       +    F   ++ LE L LS + I   ++E+ A  G ANL  L L + 
Sbjct: 66  TRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDN 122

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQM 396
           R ++   G     L  L+ L L    I+       + +PSL+ +D+              
Sbjct: 123 RLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE------------ 169

Query: 397 NVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS------LTALQNLN 450
                                     S +  G  + +     L L+      +  L  L 
Sbjct: 170 ------------LKRL----------SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLI 207

Query: 451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 510
            L+ L+L    +S            L  L +  + +  +  +   +L  L  +++    L
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 511 TNSGLGSFKPPRSLKLLDLHG 531
           T      F P   L+ + LH 
Sbjct: 268 TLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 49/310 (15%), Positives = 97/310 (31%), Gaps = 95/310 (30%)

Query: 210 MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
           +      LNL    +  +      ++  LE L LS   I +I  G               
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG--------------- 106

Query: 265 TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSV 318
            F            + L+ L++ +   +++    F   +  L+ L L +     I   + 
Sbjct: 107 AFNG---------LANLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPIESIPSYAF 156

Query: 319 EMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
             +     +LR L+L    R S    G   G L NL  L+L+   + +  I  ++ +  L
Sbjct: 157 NRIP----SLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLRE--IPNLTPLIKL 209

Query: 378 KFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET 437
             +D+S   +                                                  
Sbjct: 210 DELDLSGNHLS------------------------------------------------- 220

Query: 438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 497
              +   + Q L HL++L + Q+Q+           + L+ ++L + +LT +     + L
Sbjct: 221 --AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 498 SKLTNLSIRD 507
             L  + +  
Sbjct: 279 HHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 37/210 (17%), Positives = 58/210 (27%), Gaps = 61/210 (29%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
            N R LNL   +     V      L +LEIL LS   I    I   + + +L  +++ + 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 386 DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445
            +                                                     +   A
Sbjct: 123 RLT---------------------------------------------------TIPNGA 131

Query: 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL----RNASLTDVSLHQLSSLSKLT 501
              L+ L+ L L    +      P   F  +  L          L+ +S      LS L 
Sbjct: 132 FVYLSKLKELWLRNNPIES---IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 502 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            L++    L    + +  P   L  LDL G
Sbjct: 189 YLNLAMCNLRE--IPNLTPLIKLDELDLSG 216

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 49/288 (17%), Positives = 96/288 (33%), Gaps = 43/288 (14%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
               +  L  L L    K++         +  LE+L+LS+  L      +  +LQ L   
Sbjct: 71  DFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL--- 126

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG--AAVLKMFPRLSFLNLAWTGVTKL 227
            +    +T +       L ++  ++L  + + + G      +   +LS++ +A T +T +
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

Query: 228 PNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
           P     SL  L+L    I  +             SL G                 L+ L 
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAA----------SLKGLN--------------NLAKLG 222

Query: 286 VSNSSLSRFCF--LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +S +S+S      L     L  L L+++ +    V         ++ + L N   S+ G 
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 344 GILAG-----HLPNLEILSLSGTQIDDYAIS--YMSMMPSLKFIDISN 384
                        +   +SL    +  + I       +     + + N
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 27/226 (11%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           + ++LDL    +T++     + L  L  L L  +++S           +L  L L+   +
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 225 TKLPNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282
            +LP     +L+ L +    I  + +              G   +      +      L 
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKS----------VFNGLNQMIV----VE-----LG 153

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
              + +S +    F   MK L ++ ++ + I   ++        +L  L+L   + +   
Sbjct: 154 TNPLKSSGIENGAF-QGMKKLSYIRIADTNI--TTIPQGLP--PSLTELHLDGNKITKVD 208

Query: 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388
              L G L NL  L LS   I       ++  P L+ + ++N  + 
Sbjct: 209 AASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 34/206 (16%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
           NL  L L N + S    G  A  L  LE L LS  Q+ +       M  +L+ + +   +
Sbjct: 77  NLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLKELP---EKMPKTLQELRVHENE 132

Query: 387 IKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445
           I                 F  +  +  +      +                    +   A
Sbjct: 133 IT----------KVRKSVFNGLNQMIVVELGTNPL----------------KSSGIENGA 166

Query: 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 505
            Q +  L  + +  T ++     P      L  L L    +T V    L  L+ L  L +
Sbjct: 167 FQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 506 RDAVLTNSGLGSFKPPRSLKLLDLHG 531
               ++    GS      L+ L L+ 
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNN 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 79/261 (30%)

Query: 87  GAFRYLRSLNVADCR--RVTSSAL--WALTGMTCLKELDLSRCVKVTDAGMKHLLSI--- 139
             F  L  + V +     + SS +   A  GM  L  + ++           ++ +I   
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT---------NITTIPQG 189

Query: 140 --STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197
              +L +L L    +T    A L  L NL+ L L    ++ +   SL     L  L L  
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL-- 247

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
              +N+    L   P              L +   ++ + L N           N     
Sbjct: 248 --NNNK----LVKVPGG------------LADHKYIQVVYLHN-----------NN---- 274

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
                             I         + ++      + T+  +   + L S+ +    
Sbjct: 275 ------------------ISA-------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 318 VEMVACVG-ANLRNLNLSNTR 337
           ++            + L N +
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 49/260 (18%), Positives = 85/260 (32%), Gaps = 74/260 (28%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR 337
           L  L + N   S +S   F   +  LE L LS + +     E+   +   L+ L +    
Sbjct: 78  LHTLILINNKISKISPGAF-APLVKLERLYLSKNQL----KELPEKMPKTLQELRVHENE 132

Query: 338 FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM--MPSLKFIDISNTDIKGMYPSGQ 395
            +     +  G L  + ++ L    +    I   +   M  L +I I++T+I  + P G 
Sbjct: 133 ITKVRKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQG- 189

Query: 396 MNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERL 455
                                                            +L  L HL+  
Sbjct: 190 ----------------------------------------------LPPSLTEL-HLDGN 202

Query: 456 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515
            +  T+V  A+L  L     L  L L   S++ V    L++   L  L      L N+ L
Sbjct: 203 KI--TKVDAASLKGL---NNLAKLGLSFNSISAVDNGSLANTPHLRELH-----LNNNKL 252

Query: 516 ----GSFKPPRSLKLLDLHG 531
               G     + ++++ LH 
Sbjct: 253 VKVPGGLADHKYIQVVYLHN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 27/257 (10%)

Query: 134 KHLLSI-----STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT 188
           + L  +     S    L L E  +          L +L VL LG   +  + + +   L 
Sbjct: 64  RGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123

Query: 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE 248
            L  L+L+     N     L + P  +F  L           S L  L L N  I+SI  
Sbjct: 124 SLNTLELF----DNW----LTVIPSGAFEYL-----------SKLRELWLRNNPIESIPS 164

Query: 249 GNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307
              N+ P L ++ L     +       +     L +L++   ++     LT +  LE L+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
           +S +   +        +  +L+ L + N++ S        G L +L  L+L+   +    
Sbjct: 225 MSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDG-LASLVELNLAHNNLSSLP 282

Query: 368 ISYMSMMPSLKFIDISN 384
               + +  L  + + +
Sbjct: 283 HDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 48/255 (18%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
               +  L+ L L R   +    +     +++L  L L +  LT         L  L  L
Sbjct: 94  TFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L   P+  +   +   +  L  LDL       +    L+     +F  L          
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGE---LKK----LEYISEGAFEGL---------- 195

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN- 288
             +L+ LNL  C I  +                                  L  L++S  
Sbjct: 196 -FNLKYLNLGMCNIKDM-----------------PNLTP---------LVGLEELEMSGN 228

Query: 289 --SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGI 345
               +    F   + +L+ L + +S +    +E  A  G A+L  LNL++   SS    +
Sbjct: 229 HFPEIRPGSF-HGLSSLKKLWVMNSQV--SLIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 346 LAGHLPNLEILSLSG 360
               L  L  L L  
Sbjct: 286 FT-PLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 87  GAFRY---LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
           GAF Y   LR L + +   + S   +A   +  L  LDL    K+          +  L+
Sbjct: 141 GAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR 203
            L L    +    +  L+ L  L  L++ G    ++   S   L+ L+ L +  SQVS  
Sbjct: 200 YLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 204 GAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSN 240
                     L  LNLA   ++ LP      +  L  L+L +
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 46/261 (17%), Positives = 78/261 (29%), Gaps = 48/261 (18%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
             +L++       +    F   +  LE L L  + I    +E+ A  G A+L  L L + 
Sbjct: 77  TRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDN 133

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQM 396
             +    G     L  L  L L    I+       + +PSL  +D+              
Sbjct: 134 WLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE------------ 180

Query: 397 NVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLS------LTALQNLN 450
                            +             G    +     L L       +  L  L 
Sbjct: 181 ------------LKKLEY------ISEGAFEG----LFNLKYLNLGMCNIKDMPNLTPLV 218

Query: 451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 510
            LE L +      +           L  L + N+ ++ +  +    L+ L  L++    L
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 511 TNSGLGSFKPPRSLKLLDLHG 531
           ++     F P R L  L LH 
Sbjct: 279 SSLPHDLFTPLRYLVELHLHH 299

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 75/413 (18%), Positives = 125/413 (30%), Gaps = 83/413 (20%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGS 198
           + +  + LS   +        S LQ+L  L +    P   +   + + L+ L  L L  +
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAK 258
           Q               +F  L           ++LE L L+ C +D              
Sbjct: 90  Q--------FLQLETGAFNGL-----------ANLEVLTLTQCNLDG------------- 117

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGD 315
             L+G  F            + L  L + +     +    F   M+    LDL+ + +  
Sbjct: 118 AVLSGNFFKP---------LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 316 DSVEM-VACVGANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYA 367
              E  +   G +   L LS+          L            ++  L LSG       
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK--- 225

Query: 368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLA 427
                 M    F  I+ T I+ +  S   N+  S       +  F          +    
Sbjct: 226 ----ESMAKRFFDAIAGTKIQSLILSNSYNMGSS-----FGHTNFKD------PDNFTFK 270

Query: 428 GFIQQVGAETDL------VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIH 478
           G         DL       L  +   +   LE+L L Q +++       + F     L+ 
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK---IDDNAFWGLTHLLK 327

Query: 479 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
           L+L    L  +      +L KL  L +    +   G  SF    +LK L L  
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 64/336 (19%), Positives = 110/336 (32%), Gaps = 46/336 (13%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L+ L V               G++ L  L L    +           ++ LE L L++  
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCN 114

Query: 152 LTADGI--ALLSSLQNLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVL 208
           L    +       L +L +L L    +  +   S    + +   LDL  ++V +     L
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 209 KMFP--RLSFLNLAWTGVTKLPNI-------------SSLECLNLSNCTIDSILEG---- 249
             F     + L L+   +  +                +S+  L+LS       +      
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 250 ----------NENKAPLAKISLAGTTFINERE-AFLYIETSLLSFLDVSNSSLSR----- 293
                       + +     S   T F +     F  +E S +   D+S S +       
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294

Query: 294 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPN 352
           F   T    LE L L+ + I  + ++  A  G  +L  LNLS     S    +    L  
Sbjct: 295 FSHFTD---LEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDK 348

Query: 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388
           LE+L LS   I          +P+LK + +    +K
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 42/323 (13%), Positives = 91/323 (28%), Gaps = 25/323 (7%)

Query: 223 GVTKLPNI-SSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSL 280
           G+ ++P + + +  ++LS  +I  + E +      L  + +   T         +   S 
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 281 LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLS 334
           L  L +  +   +     F  L     LE L L+   +    +         +L  L L 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLAN---LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYP 392
           +             ++    +L L+  ++                  + +S+  ++ M  
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 393 ----SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQN 448
                 +    F          L L   G+    +      I         + SL    +
Sbjct: 198 YWLGWEKCGNPFKNTSITT---LDLSGNGFKESMAKRFFDAIAG-----TKIQSLILSNS 249

Query: 449 LNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 508
            N          +  D   F       +    L  + +  +     S  + L  L++   
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 509 VLTNSGLGSFKPPRSLKLLDLHG 531
            +      +F     L  L+L  
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQ 332

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 23/241 (9%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTKLEYLDLWG 197
           S+  +L L    L +    +   L  L+ L L    L       +S    T L+YLDL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS------SLECLNLSNCTIDSI----L 247
           + V    +  L    +L  L+   + + ++   S      +L  L++S+           
Sbjct: 88  NGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALE 304
            G  +   L  + +AG +F       ++ E   L+FLD+S      LS   F   + +L+
Sbjct: 147 NGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQ 202

Query: 305 HLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
            L++S +     S++        +L+ L+ S     ++    L     +L  L+L+    
Sbjct: 203 VLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 364 D 364
            
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 51/265 (19%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
            + L++ +    SL    F  ++  L  L LSS+ +        +  G  +L+ L+LS  
Sbjct: 30  ATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM---MPSLKFIDISNTDIKGMYPS 393
              +     L   L  LE L    + +    +S  S+   + +L ++DIS+T  +     
Sbjct: 89  GVITMSSNFL--GLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTHTR----- 139

Query: 394 GQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAG--FIQQVGAETDLVLSLTALQNLN 450
                      F  + +L  L            +AG  F +    +            L 
Sbjct: 140 -----VAFNGIFNGLSSLEVLK-----------MAGNSFQENFLPD--------IFTELR 175

Query: 451 HLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507
           +L  L+L Q    Q+S      LS    L  L++ + +   +       L+ L  L    
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLS---SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 508 AVLTNSGLGSFKP-PRSLKLLDLHG 531
             +  S     +  P SL  L+L  
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 41/239 (17%), Positives = 82/239 (34%), Gaps = 41/239 (17%)

Query: 110 ALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSE---TGLTADGIALLSSLQN 165
               +T L +L LS   +       +     ++L+ L LS      ++++       L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQ 102

Query: 166 LSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA-WTG 223
           L  LD     +  +   S+   L  L YLD+  +        +      L  L +A  + 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 224 VTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
                      + +L  L+LS C ++ +                   F +          
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPT---------------AFNS---------L 198

Query: 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
           S L  L++S+++           + +L+ LD S + I     + +    ++L  LNL+ 
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 46/224 (20%), Positives = 70/224 (31%), Gaps = 37/224 (16%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM--MPSLKFIDIS 383
           ++   L L + +  S   G+    L  L  LSLS   +        S     SLK++D+S
Sbjct: 28  SSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 384 NTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYG---YVIFPSSVLAGFIQQVGAETDL 439
              +  M  S           F+ +  L  L         +   SV             L
Sbjct: 87  FNGVITM-SSN----------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----IYL 131

Query: 440 VLS---LT-----ALQNLNHLERLNLE----QTQVSDATLFPLSTFKELIHLSLRNASLT 487
            +S              L+ LE L +     Q          L     L  L L    L 
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLE 188

Query: 488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            +S    +SLS L  L++      +     +K   SL++LD   
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 31/164 (18%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L  L+         S       +  L  LD+S                            
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT------------HTRVAFN------- 143

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQVSNRGAAVLKM 210
                  + + L +L VL + G    +  L      L  L +LDL   Q+          
Sbjct: 144 ------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 211 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEG 249
              L  LN++      L       ++SL+ L+ S   I +  + 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 83  MAYLGAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS 140
           M+    F  LR+L   D        +      G++ L+ L ++      +        + 
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
            L  L LS+  L        +SL +L VL++       L     + L  L+ LD      
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS---- 231

Query: 201 SNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSN 240
            N     +    +    +            SSL  LNL+ 
Sbjct: 232 LNH----IMTSKKQELQHF----------PSSLAFLNLTQ 257

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 66/399 (16%), Positives = 129/399 (32%), Gaps = 45/399 (11%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
                L +S+  ++    + + SL  L +L +    +  L +   +   +LEYLDL  ++
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENK 253
           +             L  L+L++     LP      N+S L+ L LS   ++         
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI 313
             ++K+ L       E+E    ++      L +   +   F F+  +      +L  S I
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
                         +   N  +   S          L NL + ++  T      I  +  
Sbjct: 198 ------------KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 374 MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV 433
             ++ +  ISN  ++G       +   +                      S+ A  I QV
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGT----------------------SLKALSIHQV 283

Query: 434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 493
            ++          +  +++   N   +      +   S     +HL   N  LTD     
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343

Query: 494 LSSLSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLH 530
              L++L  L ++   L             +SL+ LD+ 
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 69/459 (15%), Positives = 141/459 (30%), Gaps = 58/459 (12%)

Query: 110 ALTGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS--SLQNL 166
            +  ++ L+ L +S   ++  D  +        LE L LS   L       +S     NL
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVFKFNQ--ELEYLDLSHNKLVK-----ISCHPTVNL 92

Query: 167 SVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPR------------ 213
             LDL       L +      +++L++L L  + +       +                 
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 214 -------LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
                  L   N     +    N      L++S  T+ ++   N              + 
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS-SMIGDDSVEMVACVG 325
           + + +    +    L+ ++ + +S  R   L     + +  +S+  + G          G
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 326 ANLRNL---NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
            +L+ L    + +  F      I      N+ I + + +      +   S +     +D 
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYE-IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAETDLVL 441
           SN  +                    +  L  L      +   S +A    Q+ +   L +
Sbjct: 332 SNNLLTDTVFEN----------CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 442 SLTALQ---------NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 492
           S  ++              L  LN+    ++D     L     +  L L +  +  +   
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKSIP-K 438

Query: 493 QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
           Q+  L  L  L++    L +   G F    SL+ + LH 
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 56/368 (15%), Positives = 123/368 (33%), Gaps = 55/368 (14%)

Query: 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCT 242
            K   L++  + +S    + +    +L  L ++   +  L          LE L+LS+  
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-- 78

Query: 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQ 299
                    NK  L KIS   T                L  LD+S     +L        
Sbjct: 79  ---------NK--LVKISCHPTV--------------NLKHLDLSFNAFDALPICKEFGN 113

Query: 300 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
           M  L+ L LS++ +   SV  +A    +L    +      + G       L +    SL 
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIA----HLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLH-AYGY 418
                +    ++  +      ++  ++IK +    + + F S    +       +     
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 419 VIFPSSVLAGFIQQVGAETDLVLSLTALQ------------NLNHLERLNLEQTQVSDAT 466
           +    +     +Q V   T    S++ ++            +   L+ L++ Q       
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 467 LFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSKLTNLSIRDAVLTNSGLGSFKPPRS 523
                 ++   +++++N +++   +  +   S +S   +L   + +LT++   +      
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 524 LKLLDLHG 531
           L+ L L  
Sbjct: 350 LETLILQM 357

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 39/278 (14%), Positives = 94/278 (33%), Gaps = 37/278 (13%)

Query: 94  SLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSE 149
           +LN  +    +   +  L   T +    +S          +       S+  L    +  
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 150 TGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK 209
                    +     N+++ +        + +     ++   +LD   + +++       
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 210 MFPRLSFLNLAWTGVTKLPNIS-------SLECLNLSNCTIDSILEGNENKAPLAKISLA 262
               L  L L    + +L  I+       SL+ L++S  ++                   
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV------------------- 386

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
             ++  ++    + ++  L  L++S++ L+   F      ++ LDL S+ I   S+    
Sbjct: 387 --SYDEKKGDCSWTKS--LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI--KSIPKQV 440

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
                L+ LN+++ +  S   GI    L +L+ + L  
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDR-LTSLQKIWLHT 477

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 225 TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
            +  N      L+L    I  I    EN                     L         +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVI----EN---------------------LGATLDQFDAI 47

Query: 285 DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGV 343
           D S++ + +      ++ L+ L ++++ I     E +     +L  L L+N        +
Sbjct: 48  DFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDL 106

Query: 344 GILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 381
             LA  L +L  L +     T    Y +  +  +P ++ +D
Sbjct: 107 DPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 275 YIETSLLSFLDVSNSSLSRFCFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
           Y        LD+    +     L   +   + +D S + I    ++    +   L+ L +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLL-RRLKTLLV 71

Query: 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISN 384
           +N R    G   L   LP+L  L L+   + +   +  ++ + SL ++ I  
Sbjct: 72  NNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 114 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG 173
           +     +D S        G   L     L+ L ++   +   G  L  +L +L+ L L  
Sbjct: 41  LDQFDAIDFSDNEIRKLDGFPLL---RRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 174 LPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG---AAVLKMFPRLSFLN 218
             + +L  L  L  L  L YL +  + V+N+      V+   P++  L+
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 135 HLLSISTLEKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
              +     +L L    +    I  L ++L     +D     +  L      +L +L+ L
Sbjct: 14  QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLA------WTGVTKLPNISSLECLNLSNCTI 243
            +  +++   G  + +  P L+ L L          +  L ++ SL  L +    +
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 43/359 (11%), Positives = 97/359 (27%), Gaps = 106/359 (29%)

Query: 190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTID 244
              LDL  + +S       K    L  L L    ++K+       +  L+ L +S   + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMK 301
            I                     +            L  L + +     + +  F + ++
Sbjct: 116 EIPPN---------------LPSS------------LVELRIHDNRIRKVPKGVF-SGLR 147

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
            +  +++  + + +   E  A  G  L  L +S  + +     I       L  L L   
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG----IPKDLPETLNELHLDHN 203

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421
           +I    +  +     L  + + +  I+                                 
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIR--------------------------------- 230

Query: 422 PSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIH 478
                             ++   +L  L  L  L+L+    ++V       L   K L  
Sbjct: 231 ------------------MIENGSLSFLPTLRELHLDNNKLSRVPAG----LPDLKLLQV 268

Query: 479 LSLRNASLTDVS------LHQLSSLSKLTNLSIRDAVLTNSGL--GSFKPPRSLKLLDL 529
           + L   ++T V       +      +    +S+ +  +    +   +F+       +  
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 46/289 (15%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
              G+  L  L L    K++    K    +  L+KL++S+  L      L SSL  L   
Sbjct: 73  DFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL--- 128

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKL 227
            +    +  +       L  +  +++ G+ + N G      F   +L++L ++   +T +
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGLKLNYLRISEAKLTGI 187

Query: 228 PNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
           P     +L  L+L +  I +I                      E E  L    S L  L 
Sbjct: 188 PKDLPETLNELHLDHNKIQAI----------------------ELEDLL--RYSKLYRLG 223

Query: 286 VSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
           + +     +      + +  L  L L ++ +    V         L+ + L     +  G
Sbjct: 224 LGHNQIRMIENGSL-SFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 343 VGILAG-----HLPNLEILSLSGTQIDDYAISYM--SMMPSLKFIDISN 384
           V                 +SL    +  + +       +     I   N
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 23/192 (11%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS----RCVKVTDAGMKHLLSISTL 142
                L  L + D R +        +G+  +  +++                 L     L
Sbjct: 120 NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KL 174

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
             L +SE  LT     L  +L  L    L    +  + L  L   +KL  L L  +Q+  
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNEL---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 203 RGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSI-------LEGNE 251
                L   P L  L+L    ++++P    ++  L+ + L    I  +       +    
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 252 NKAPLAKISLAG 263
            +A    ISL  
Sbjct: 292 KRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 39/255 (15%), Positives = 72/255 (28%), Gaps = 64/255 (25%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
            + LD+ N   S L +  F   ++ L  L L ++ I    +   A      L+ L +S  
Sbjct: 56  TTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKN 112

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQM 396
                   I      +L  L +   +I        S + ++  I++    +         
Sbjct: 113 HLVE----IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL--------- 159

Query: 397 NVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLN 456
                                                    +      A   L  L  L 
Sbjct: 160 ----------------------------------------ENSGFEPGAFDGLK-LNYLR 178

Query: 457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 516
           + + +++     P    + L  L L +  +  + L  L   SKL  L +    +     G
Sbjct: 179 ISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 517 SFKPPRSLKLLDLHG 531
           S     +L+ L L  
Sbjct: 236 SLSFLPTLRELHLDN 250

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 9e-09
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 29/157 (18%)

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
             +++  L L NC  +             KI      F+N            L FL + N
Sbjct: 22  TPAAVRELVLDNCKSNDG-----------KIEGLTAEFVN------------LEFLSLIN 58

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILA 347
             L     L ++  L+ L+LS + I      +   +  NL +LNLS  +    + +  L 
Sbjct: 59  VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLK 117

Query: 348 GHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 381
             L  L+ L L     T ++DY  S   ++P L ++D
Sbjct: 118 -KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 283 FLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341
            LD   S+  +      +   LE L L +  +   SV  +  +   L+ L LS  R    
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKL-PKLKKLELSENRIFG- 85

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISN 384
           G+ +LA  LPNL  L+LSG ++ D + +  +  +  LK +D+ N
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPV 176
           ++EL L  C                LE L L   GL +  ++ L  L  L  L+L    +
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRI 83

Query: 177 TDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLPN 229
              +    + L  L +L+L G+++ +      LK    L  L+L    VT L +
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 37/258 (14%)

Query: 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTK 189
             + + + S  +K  +             ++ + L   +L      V    L S + L +
Sbjct: 317 TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQE 376

Query: 190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
           LE  + W           L +   +  L+        L   S+L+ ++         L  
Sbjct: 377 LEPENKWCL---------LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR- 426

Query: 250 NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS 309
                          +      + L +E + +  L +++  L+  C L Q+  + HLDLS
Sbjct: 427 ---------------SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471

Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDY- 366
            + +      + A     L  L  S+    +     + G  +LP L+ L L   ++    
Sbjct: 472 HNRLRALPPALAALR--CLEVLQASDNALEN-----VDGVANLPRLQELLLCNNRLQQSA 524

Query: 367 AISYMSMMPSLKFIDISN 384
           AI  +   P L  +++  
Sbjct: 525 AIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 83  MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142
           + +L     +  L+++  R    +   AL  + CL+ L  S        G+ +L     L
Sbjct: 456 LCHLEQLLLVTHLDLSHNR--LRALPPALAALRCLEVLQASDNALENVDGVANLPR---L 510

Query: 143 EKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVT---DLVLRSLQVLTKLEYLD 194
           ++L L    L     I  L S   L +L+L G  +     +  R  ++L  +  + 
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 43/242 (17%)

Query: 134 KHLLSI-----STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT 188
           + L ++     +  ++++L    ++    A   + +NL++L L    +  +   +   L 
Sbjct: 21  QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 189 KLEYLDLWG-SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCT 242
            LE LDL   +Q+ +   A      RL  L+L   G+ +L       +++L+ L L +  
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQ 299
           + ++ +                TF +            L+ L +     SS+    F   
Sbjct: 141 LQALPDD---------------TFRD---------LGNLTHLFLHGNRISSVPERAF-RG 175

Query: 300 MKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358
           + +L+ L L  + +    V   A      L  L L     S+     LA  L  L+ L L
Sbjct: 176 LHSLDRLLLHQNRV--AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRL 232

Query: 359 SG 360
           + 
Sbjct: 233 ND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 25/170 (14%)

Query: 87  GAFRYLRSLNV---ADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS--- 140
            AF  L  L     +D  ++ S       G+  L  L L RC          L  +    
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC---------GLQELGPGL 124

Query: 141 -----TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
                 L+ L+L +  L A        L NL+ L L G  ++ +  R+ + L  L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSN 240
             ++V++      +   RL  L L    ++ LP      + +L+ L L++
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 29/219 (13%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS-N 384
           A  + + L   R S            NL IL L    +     +  + +  L+ +D+S N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 385 TDIKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAETDLVLS- 442
             ++ + P+           F  +  L  LH     +    +  G  + + A   L L  
Sbjct: 91  AQLRSVDPA----------TFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQD 138

Query: 443 --LT-----ALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 492
             L        ++L +L  L L     + V +     L     L  L L    +  V  H
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH---SLDRLLLHQNRVAHVHPH 195

Query: 493 QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
               L +L  L +    L+     +  P R+L+ L L+ 
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE----TGLTADGIALLSSLQN 165
           +      L  L L     +          ++ LE+L LS+      +          L  
Sbjct: 51  SFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---TFHGLGR 106

Query: 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT 225
           L  L L    + +L     + L  L+YL L  + +        +    L+ L L    ++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 226 KLP-----NISSLECLNLSNCTIDSILEG 249
            +P      + SL+ L L    +  +   
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 29/157 (18%)

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
             S ++ L L N   +             K+      F              L FL   N
Sbjct: 15  TPSDVKELVLDNSRSNEG-----------KLEGLTDEFEE------------LEFLSTIN 51

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILA 347
             L+    L ++  L+ L+LS + +    +E++A    NL +LNLS  +    + +  L 
Sbjct: 52  VGLTSIANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110

Query: 348 GHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 381
             L NL+ L L     T ++DY  +   ++P L ++D
Sbjct: 111 K-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           ++ L + + R               L+ L       +T   + +L  ++ L+KL LS+  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTS--IANLPKLNKLKKLELSDNR 75

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG---AAV 207
           ++     L     NL+ L+L G  + DL  +  L+ L  L+ LDL+  +V+N       V
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 208 LKMFPRLSFL 217
            K+ P+L++L
Sbjct: 136 FKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356
             + + LE L   +  +   S+  +  +   L+ L LS+ R S  G+ +LA   PNL  L
Sbjct: 38  TDEFEELEFLSTINVGL--TSIANLPKL-NKLKKLELSDNRVSG-GLEVLAEKCPNLTHL 93

Query: 357 SLSGTQIDDYA-ISYMSMMPSLKFIDISN 384
           +LSG +I D + I  +  + +LK +D+ N
Sbjct: 94  NLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 138 SISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           + S +++L L  +      +  L    + L  L    + +T +   +L  L KL+ L+L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLA------WTGVTKLPNISSLECLNLSNC 241
            ++VS     + +  P L+ LNL+       + +  L  + +L+ L+L NC
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADC--RRVTSSALWALTGMTCLKELDLS 123
           + + + L    S + +       F  L  L+  +     + +     L  +  LK+L+LS
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLELS 72

Query: 124 RCVKVTDAGMKHLLSISTLEKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLV-- 180
              +V+            L  L LS   +     I  L  L+NL  LDL    VT+L   
Sbjct: 73  DN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 181 -LRSLQVLTKLEYLD 194
                ++L +L YLD
Sbjct: 132 RENVFKLLPQLTYLD 146

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 50/268 (18%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSIS--------TLEKLWLSETGLTADGIALLSSLQNLSV 168
           LK L +    ++    +   L +         TLE L ++ T       A    L  L++
Sbjct: 70  LKRLTVRA-ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 169 LDLGGLPVTDLVLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW---TGV 224
            ++        +    Q L   L+ L +  +   N     +++FP LS L+L+     G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 225 TKLPN------ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
             L +        +L+ L L N  +++                      +   + L    
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETP---------------------SGVCSALAAAR 227

Query: 279 SLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
             L  LD+S++SL              L  L+LS + +     ++   + A L  L+LS 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLPAKLSVLDLSY 283

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQI 363
            R            LP +  LSL G   
Sbjct: 284 NRLDR---NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 51/262 (19%), Positives = 78/262 (29%), Gaps = 28/262 (10%)

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDL-----VLRSLQVLTKLEYLDLWGSQVSNRGAA 206
           L A  + L    ++L  L        DL     +++SL  L +L             GA 
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGAL 89

Query: 207 VLKMFPRLSFLNLAWTGVTKLPNIS-------SLECLNLSNCTIDSILEGNENKAPLAKI 259
            +     L  L L    VT              L  LNL N +  +            K 
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 260 SLAGTTFINEREAFLYIET----SLLSFLDVSN------SSLSRFCFLTQMKALEHLDLS 309
            L   +           E       LS LD+S+        L       +   L+ L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 310 SSMIGDDSVEMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
           ++ +   S    A   A   L+ L+LS+     A           L  L+LS T +    
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV- 268

Query: 368 ISYMSMMPSLKFIDISNTDIKG 389
                +   L  +D+S   +  
Sbjct: 269 --PKGLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSIS--TLEKLWLSETGLTADGIALLS----SL 163
            + G++ L+EL L    +VT      LL  +   L  L L           L        
Sbjct: 90  RVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR----GAAVLKMFPRLSFLNL 219
             L VL +      +     ++V   L  LDL  +          A     FP L  L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 220 AWTGVTKLPNI--------SSLECLNLSNCTIDSILEGNENKAP--LAKISLAGTTFINE 269
              G+     +          L+ L+LS+ ++           P  L  ++L+ T     
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--- 265

Query: 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310
           ++    +   L S LD+S + L R     ++  + +L L  
Sbjct: 266 KQVPKGLPAKL-SVLDLSYNRLDRNPSPDELPQVGNLSLKG 305

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 62/400 (15%), Positives = 128/400 (32%), Gaps = 49/400 (12%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
              + L LS+  ++   +  +S L  L VL L    +  L          LEYLD+  ++
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENK 253
           + N     +     L  L+L++     LP      N++ L  L LS             K
Sbjct: 112 LQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-----------AK 157

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE-HLDLSSSM 312
               ++ L     ++     L + +  +        + S     T +  L  H +   S+
Sbjct: 158 --FRQLDLLPVAHLHLSCILLDLVSYHIK----GGETESLQIPNTTVLHLVFHPNSLFSV 211

Query: 313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372
             + SV  +  +   L N+ L++       +  L+       +L+++   I+      + 
Sbjct: 212 QVNMSVNALGHL--QLSNIKLNDENCQRL-MTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ 432
           +        +   +I  +  + +++     Y    + +L                  I+ 
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM-----------------IEH 311

Query: 433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 492
           V  +  L            +    L  +      +    +      L+      TD    
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 493 QLSSLSKLTNLSIRDAVLTNSGLGSFKPP--RSLKLLDLH 530
             S+L +L  L ++   L N    +       SL+ LD+ 
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 65/422 (15%), Positives = 132/422 (31%), Gaps = 65/422 (15%)

Query: 115 TCLKELDLS----RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ-NLSVL 169
             L+ LDLS      + V         +++ L  L LS        +  ++ L  +  +L
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKE----FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           DL    +      SLQ+      L L              +F     +++   G  +L  
Sbjct: 177 DLVSYHIKGGETESLQIP-NTTVLHLVFHP--------NSLFSVQVNMSVNALGHLQL-- 225

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAG--TTFINEREAFLYIETSLLSFLDVS 287
            S+++  + +   + + L        L  ++L    TT+    + F +     + +L++ 
Sbjct: 226 -SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 288 NSSLSRFCFL-------TQMKALEHLDLS-------SSMIGDDSVEMVACVGANLRNLNL 333
           N +++            T +K+L    +           +     EM      N++ L++
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM------NIKMLSI 338

Query: 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS 393
           S+T F             +   L+ +     D      S +  L+ + +    +K     
Sbjct: 339 SDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK----- 390

Query: 394 GQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL---- 449
              N F  A     + +L           S           +   L LS   L       
Sbjct: 391 ---NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 450 --NHLERLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 505
               ++ L+L   ++      P        L  L++ +  L  V       L+ L  + +
Sbjct: 448 LPPKVKVLDLHNNRIMS---IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504

Query: 506 RD 507
            D
Sbjct: 505 HD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 40/278 (14%), Positives = 87/278 (31%), Gaps = 53/278 (19%)

Query: 114 MTCLKELDLSRC----VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
              ++ L++           +       ++ +L    +          AL S    +++ 
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L       + +      +   +L+   +  ++          RL  L L   G+     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289
           +                                         A +    S L  LDVS +
Sbjct: 395 V-----------------------------------------ALMTKNMSSLETLDVSLN 413

Query: 290 SLSR--FCFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 346
           SL+   +       +++  L+LSS+M+         C+   ++ L+L N R  S    + 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNNRIMSIPKDVT 470

Query: 347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
             HL  L+ L+++  Q+          + SL++I + +
Sbjct: 471 --HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 37/254 (14%), Positives = 85/254 (33%), Gaps = 55/254 (21%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
                  +L L+  GL++    L     +L  L      +T+L     Q L  L   +  
Sbjct: 68  CLDRQAHELELNNLGLSS----LPELPPHLESLVASCNSLTELP-ELPQSLKSLLVDNNN 122

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENK 253
              +S+       + P L +L ++   + KLP +   S L+ +++ N ++  + +   + 
Sbjct: 123 LKALSD-------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS- 174

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI 313
                                      L F+   N+ L     L  +  L  +   ++ +
Sbjct: 175 ---------------------------LEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
                  +     +L ++   N       +  L  +LP L  +      +     +   +
Sbjct: 208 KKLPDLPL-----SLESIVAGNNILEE--LPEL-QNLPFLTTIYADNNLL----KTLPDL 255

Query: 374 MPSLKFIDISNTDI 387
            PSL+ +++ +  +
Sbjct: 256 PPSLEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 45/292 (15%), Positives = 101/292 (34%), Gaps = 74/292 (25%)

Query: 117 LKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGL 174
             EL+L+        G+  L      LE L  S   LT   +  L  SL++L V +    
Sbjct: 73  AHELELNNL------GLSSLPELPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLK 124

Query: 175 PVTDL--VLRSLQV-------------LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
            ++DL  +L  L V              + L+ +D+  + +      +  + P L F+  
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK----LPDLPPSLEFIAA 180

Query: 220 AWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYI 276
               + +LP +     L  +   N ++  + +   +                        
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS------------------------ 216

Query: 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
               L  +   N+ L     L  +  L  +   ++++     + +  +  +L  LN+ + 
Sbjct: 217 ----LESIVAGNNILEELPELQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDN 267

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388
             +   +  L   L  L++     + + +         P+L +++ S+ +I+
Sbjct: 268 YLTD--LPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 41/255 (16%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           L   + LK +D+          +K L     +LE +      L    +  L +L  L+ +
Sbjct: 149 LQNSSFLKIIDVDNN------SLKKLPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAI 200

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
                 +  L      +   LE +    + +       L+  P L+ +      +  LP+
Sbjct: 201 YADNNSLKKLP----DLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLPD 254

Query: 230 -ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
              SLE LN+ +  +  + E  ++   L  + ++     +            L +L+ S+
Sbjct: 255 LPPSLEALNVRDNYLTDLPELPQS---LTFLDVSE-NIFSGLSELP----PNLYYLNASS 306

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 348
           + +   C      +LE L++S++ + +            L  L  S    +      +  
Sbjct: 307 NEIRSLC--DLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE-----VPE 354

Query: 349 HLPNLEILSLSGTQI 363
              NL+ L +    +
Sbjct: 355 LPQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 40/274 (14%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSET 150
           L S+   +        L  L  +  L  +            +K L     +LE L + + 
Sbjct: 217 LESIVAGNNIL---EELPELQNLPFLTTIYADNN------LLKTLPDLPPSLEALNVRDN 267

Query: 151 GLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKM 210
            LT     L    Q+L+ LD+     + L     ++   L YL+      SN   ++  +
Sbjct: 268 YLTD----LPELPQSLTFLDVSENIFSGLS----ELPPNLYYLNA----SSNEIRSLCDL 315

Query: 211 FPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 269
            P L  LN++   + +LP     LE L  S   +  + E  +N   L ++ +        
Sbjct: 316 PPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLRE- 371

Query: 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 329
                      +  L +++            + L+ L + ++ + +           ++ 
Sbjct: 372 ----FPDIPESVEDLRMNSHLAE---VPELPQNLKQLHVETNPLREFPDIP-----ESVE 419

Query: 330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
           +L +++ R               LE         
Sbjct: 420 DLRMNSERVVD-PYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 43/252 (17%), Positives = 88/252 (34%), Gaps = 37/252 (14%)

Query: 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLG 172
               L+ +       + +  +  L ++  L  ++     L      L     +L  L++ 
Sbjct: 213 LPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNNLLKT----LPDLPPSLEALNVR 265

Query: 173 GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-IS 231
              +TDL     Q LT L+  +   S +S          P L +LN +   +  L +   
Sbjct: 266 DNYLTDL-PELPQSLTFLDVSENIFSGLSEL-------PPNLYYLNASSNEIRSLCDLPP 317

Query: 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291
           SLE LN+SN  +  +         L ++  +           +      L  L V  + L
Sbjct: 318 SLEELNVSNNKLIELPALPPR---LERLIASFNHLAE-----VPELPQNLKQLHVEYNPL 369

Query: 292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351
             F  +   +++E L ++S       +  V  +  NL+ L++                  
Sbjct: 370 REFPDI--PESVEDLRMNS------HLAEVPELPQNLKQLHVETNPLRE-----FPDIPE 416

Query: 352 NLEILSLSGTQI 363
           ++E L ++  ++
Sbjct: 417 SVEDLRMNSERV 428

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 45/271 (16%), Positives = 87/271 (32%), Gaps = 49/271 (18%)

Query: 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ 164
            S+       +  + L       +      +   +S  ++ + ++           ++  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALR----PYHDVLSQWQRHYNADRNRW-HSAWRQANSN 56

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLT--KLEYLDLWGSQVSNRGAAVLKMFP-------RLS 215
           N  +    G  +       L+  T      L+L            L  FP        L 
Sbjct: 57  NPQIETRTGRALKAT-ADLLEDATQPGRVALELRSVP--------LPQFPDQAFRLSHLQ 107

Query: 216 FLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 271
            + +   G+ +LP      + LE L L+   + ++     +   L ++S+          
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA-------- 159

Query: 272 AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG--ANLR 329
                    L+ L    +S         +  L+ L L  + I      + A +    NL+
Sbjct: 160 ------CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLPASIANLQNLK 209

Query: 330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           +L + N+  S+ G  I   HLP LE L L G
Sbjct: 210 SLKIRNSPLSALGPAI--HHLPKLEELDLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 51/299 (17%), Positives = 87/299 (29%), Gaps = 52/299 (17%)

Query: 90  RYLRSLNVADCRRVTSSALW-ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
               +L       +        L+        D +R             + +  +    +
Sbjct: 12  SGRENLYFQGSTALRP--YHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRT 64

Query: 149 ETGLTADGIAL-LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV 207
              L A    L  ++      L+L  +P+          L+ L+++ +  +         
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAG-------- 115

Query: 208 LKMFP-------RLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSIL--EGNENKA 254
           L   P        L  L LA   +  LP    +++ L  L++  C   + L        A
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 255 PLAKISLAGTTFINEREAFLYIETSL---------LSFLDVSNSSLSRF-CFLTQMKALE 304
                 L     +      +    SL         L  L + NS LS     +  +  LE
Sbjct: 176 SGEHQGLVNLQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 305 HLDLSSSMIGDDSVEMVACVG--ANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSG 360
            LDL                G  A L+ L L + +   +  + I    L  LE L L G
Sbjct: 233 ELDLRGC---TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRG 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 37/152 (24%)

Query: 115 TCLKELDLSRCVKVTD--------AGMKHLLSISTLEKLWLSETGLTA--DGIALLSSLQ 164
             L+EL +  C ++T+                +  L+ L L  TG+ +    IA L +L+
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209

Query: 165 NLSVLD--LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFP-------RLS 215
           +L + +  L  L        ++  L KLE LDL G          L+ +P        L 
Sbjct: 210 SLKIRNSPLSALG------PAIHHLPKLEELDLRGC---TA----LRNYPPIFGGRAPLK 256

Query: 216 FLNLAW-TGVTKLP----NISSLECLNLSNCT 242
            L L   + +  LP     ++ LE L+L  C 
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 114/696 (16%), Positives = 201/696 (28%), Gaps = 236/696 (33%)

Query: 1   MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLAD--SLLRHLIRRRLIFPS 58
           M ++  S  +RL         E + +     + +E +   L      L   I+     PS
Sbjct: 56  MSKDAVSGTLRL-FWTLLSKQEEMVQ-----KFVEEV---LRINYKFLMSPIKTEQRQPS 106

Query: 59  LLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLK 118
           ++    +  +   L  +N V                 NV   R         L     L 
Sbjct: 107 MMTR-MYIEQRDRLYNDNQV-------------FAKYNV--SRL---QPYLKLR--QALL 145

Query: 119 ELDLSRCVKVTDAGM----KHLLSISTL--EKL---------WLSETGLTADGIALLSSL 163
           EL  ++ V +   G+    K  +++      K+         WL+          +L  L
Sbjct: 146 ELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEML 202

Query: 164 QNLSV-LDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           Q L   +D      +D    + LR   +  +L  L               K +     L 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------------KPYEN-CLLV 249

Query: 219 LA--WTGVTKLPNISSLECLNLSNCTI----------DSILEGNENKAPLAKISLAGTTF 266
           L                   NL +C I          D +         L   S+  T  
Sbjct: 250 LLNVQN-----AKA--WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-- 299

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326
               E     ++ LL +LD     L R       + L       S+I             
Sbjct: 300 --PDEV----KSLLLKYLDCRPQDLPR-------EVLTTNPRRLSIIA-----------E 335

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
           ++R+   +   +          H+ N + L+   T I+           SL  ++    +
Sbjct: 336 SIRDGLATWDNWK---------HV-NCDKLT---TIIES----------SLNVLE--PAE 370

Query: 387 IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL--- 443
            + M+                   L        +FP S     I        ++LSL   
Sbjct: 371 YRKMF-----------------DRLS-------VFPPSAH---I------PTILLSLIWF 397

Query: 444 -----TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 498
                  +  +N L + +L + Q  ++T+   S     I+L L+     + +LH+    S
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-----IYLELKVKLENEYALHR----S 448

Query: 499 KLTNLSIRDAVLTNSGLGSFKPPRS-----------LKLLDLHGGWLLTEDAILQFCKMH 547
            + + +I     ++       PP             LK ++      L     L F  + 
Sbjct: 449 IVDHYNIPKTFDSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 548 PRIE----VWHELSVICP--------SDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSF 595
            +I      W+    I             I  N P   R      LV    D       F
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER------LVNAILD-------F 551

Query: 596 LDQRLKYSREELLELQYSSL---SLARPDDSSTQDA 628
           L +      E L+  +Y+ L   +L   D++  ++A
Sbjct: 552 LPK----IEENLICSKYTDLLRIALMAEDEAIFEEA 583

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
             ++ L LS   +T    + L    NL  L L    +  +   S   L  LE+LDL    
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS--- 108

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGN--ENKAPLA 257
             N     L       F  L           SSL  LNL      ++ E +   +   L 
Sbjct: 109 -YNY----LSNLSSSWFKPL-----------SSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSS---SM 312
            + +       + +   +   + L  L++  S L  +    L  ++ + HL L      +
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 313 IGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAIS 369
           + +  V++ + V    LR+ +L    FS    G             + ++   +      
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-K 271

Query: 370 YMSMMPSLKFIDISNTDIKGMYPS 393
            ++ +  L  ++ S   +K +   
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 15/178 (8%)

Query: 87  GAFRY---LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
             F+    L  LN+      T       + +T L+ L +      T    K    ++ LE
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG------ 197
           +L +  + L +     L S+QN+S L L       L+   + V + +E L+L        
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 198 --SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEG 249
             S++S      L        + +    + ++      IS L  L  S   + S+ +G
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 31/235 (13%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
           NL+ L L++   ++      +  L +LE L LS   + + + S+   + SL F+++    
Sbjct: 77  NLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 387 IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFP---------------SSVLAGFIQ 431
            K +  +   +         +             F                 S     ++
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 432 QVGAETDLVLS---LTAL-----QNLNHLERLNLEQTQVSDATL--FPLSTFKELIHL-S 480
            +   + L+L       L        + +E L L  T +               LI   +
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 481 LRNASLTDVSLHQL----SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
            RN  +TD SL Q+    + +S L  L      L +   G F    SL+ + LH 
Sbjct: 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 43/278 (15%)

Query: 115 TCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG 173
             +  L +          +  L      L  L +S   LT+    L   L  LS+     
Sbjct: 61  AHITTLVIPDN------NLTSLPALPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPL 113

Query: 174 LPVTDLV--LRSLQV-----------LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220
             +  L   L  L +              L+ L +      N+ A++  +   L  L   
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD----NQLASLPALPSELCKLWAY 169

Query: 221 WTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279
              +T LP   S L+ L++S+  + S+         L K+        N R   L    S
Sbjct: 170 NNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE---LYKLWAY-----NNRLTSLPALPS 221

Query: 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339
            L  L VS + L+    L     L+ L +S + +    +       + L +L++   + +
Sbjct: 222 GLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLP-----SGLLSLSVYRNQLT 274

Query: 340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
                +   HL +   ++L G  + +  +  +  + S 
Sbjct: 275 RLPESL--IHLSSETTVNLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 40/218 (18%)

Query: 163 LQNLSVLDLGGLPVTDL---VLRSLQVL--------------TKLEYLDLWGSQVSNRGA 205
               +VL++G   +T L   +   +  L               +L  L++ G+Q+++   
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV 98

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265
               +   LS  +   T +  LP  S L  L +    + S+         L ++S++   
Sbjct: 99  LPPGL-LELSIFSNPLTHLPALP--SGLCKLWIFGNQLTSLPVLPPG---LQELSVSDNQ 152

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325
             +     L    S L  L   N+ L+          L+ L +S + +            
Sbjct: 153 LAS-----LPALPSELCKLWAYNNQLTS--LPMLPSGLQELSVSDNQLASLPTLP----- 200

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
           + L  L   N R +S     L      L+ L +SG ++
Sbjct: 201 SELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRL 233

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 5e-07
 Identities = 39/261 (14%), Positives = 87/261 (33%), Gaps = 38/261 (14%)

Query: 121 DLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIA------LLSSLQNLSVLDLGGL 174
           +   C  + D  +++    +  E L+  +       I+      L   L  + +L+   +
Sbjct: 120 EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI 179

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLE 234
             T+ +    +    L+ L++    + +     +                + LPN   LE
Sbjct: 180 KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDI--------------LGSDLPN---LE 222

Query: 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 294
            L L     D     + +      +  +   F N       ++   +   +  N  +  F
Sbjct: 223 KLVLYVGVEDYG--FDGDMNVFRPL-FSKDRFPN-------LKWLGIVDAEEQNVVVEMF 272

Query: 295 CFLTQMKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAGHLP 351
                +  LE +D+S+ ++ D+   ++        +L+ +N+     S      L   LP
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP 332

Query: 352 NLEILSLSGTQIDDYAISYMS 372
               + +S +Q  D   SY  
Sbjct: 333 MK--IDVSDSQEYDDDYSYPM 351

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 8e-05
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV-GILAGHLPNLE 354
            L  M  L +L +  +    +++ +      NL++L + +     + V  IL   LPNLE
Sbjct: 167 VLDAMPLLNNLKIKGT----NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 355 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLH 414
            L L     D                   + D+    P    + F +     IV     +
Sbjct: 223 KLVLYVGVEDY----------------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266

Query: 415 AYGYVIFPSSVLA---------GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 465
               +   S +L          G +   GA     L L  +  + HL+ +N++   +SD 
Sbjct: 267 VVVEMFLESDILPQLETMDISAGVLTDEGAR----LLLDHVDKIKHLKFINMKYNYLSDE 322

Query: 466 TLFPL-STFKELIHLS 480
               L  +    I +S
Sbjct: 323 MKKELQKSLPMKIDVS 338

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 21/143 (14%)

Query: 109 WALTGMTCLKELDLSRC-VKVTDAGM-KHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166
           W  T +T L  L LS   +    +     +     L  L LS   L      L S LQ L
Sbjct: 58  WTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLDLSSNHLHTLDEFLFSDLQAL 114

Query: 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226
            VL L    +  +   + + + +L+ L L  +Q        +  FP     +        
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--------ISRFPVELIKD-------- 158

Query: 227 LPNISSLECLNLSNCTIDSILEG 249
              +  L  L+LS+  +  +   
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLT 181

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 92  LRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVTDAGMKHL---LSI-STLE 143
           L  +N+ +   +    L     AL   T +K+  +    +  D     L   L + +TL+
Sbjct: 38  LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLK 96

Query: 144 KLWLSETGLTADGI-ALLSSLQN---LSVLDLG------GLPVTDLVLRSLQVLTKLEYL 193
            L +    ++  GI AL+ +LQ+   L  L +       G  V   +   L+  T L   
Sbjct: 97  SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156

Query: 194 DLWGSQVSNRGAA 206
               +Q   R  A
Sbjct: 157 GYHFTQQGPRLRA 169

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 115 TCLKELDLSRCVKVTDAGMKHL---LSI-STLEKLWLSETGLTADG-IALLSSLQN---L 166
             L+E++L+  + +    +K     L   + ++K  +  T        AL   L+    L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 167 SVLDLGGLPVTDL-------VLRSLQVLTKLEYLDLWGSQVSNRG----AAVLKMFPRLS 215
             L++    ++          L+S   L +L  +D     + N      A +L+    L 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEKNTTLL 154

Query: 216 FLNLAWT 222
                +T
Sbjct: 155 KFGYHFT 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 39/220 (17%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           +   LDL   P+  L   S     +L+ LDL   ++        +    LS L L    +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 225 TKLP-----NISSLECLNLSNCTIDSILEG-------------NENKAPLAKISLAGTTF 266
             L       +SSL+ L      + S+                  N   +    L    F
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSFKLPE-YF 145

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALE-HLDLSSSMIGDDSVEM 320
            N          + L  LD+S++ +          L QM  L   LDLS + +  + ++ 
Sbjct: 146 SN---------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQP 194

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
            A     L+ L L   +  S   GI    L +L+ + L  
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFD-RLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 40/176 (22%)

Query: 87  GAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS---- 140
           GA++ L  L+        + S AL A +G++ L++L              +L S+     
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET---------NLASLENFPI 120

Query: 141 ----TLEKLWLSE---TGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
               TL++L ++               S+L NL  LDL    +  +    L+VL ++  L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
           +L      N     +      +F  +             L+ L L    + S+ +G
Sbjct: 179 NLSLDLSLNP----MNFIQPGAFKEI------------RLKELALDTNQLKSVPDG 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 10/170 (5%)

Query: 87  GAFRYLRSL---NVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
           GAF     L    ++    +        + +  L E+ + +   +     +   ++  L+
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLT-KLEYLDLWGSQVS 201
            L +S TG+               +LD+     +  +   S   L+ +   L L  + + 
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI 246
               +                 + +LP       S    L++S   I S+
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 39/232 (16%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLA-WT 222
           N   L      +  +   +      LE +++  + V     A V    P+L  + +    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 223 GVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIE 277
            +  +      N+ +L+ L +SN  I  + +                  I+  +      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDV---------------HKIHSLQ------ 129

Query: 278 TSLLSFLDVSN----SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                 LD+ +     ++ R  F+        L L+ + I    +   A  G  L  LNL
Sbjct: 130 ---KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNL 184

Query: 334 S-NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
           S N         +  G      IL +S T+I       +  +  L+     N
Sbjct: 185 SDNNNLEELPNDVFHG-ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 38/290 (13%), Positives = 67/290 (23%), Gaps = 74/290 (25%)

Query: 210 MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN--ENKAPLAKISLA 262
           +      L    T +  +          LE + +S   +  ++E +   N   L +I + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 263 GTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS----SMIGD 315
               +       +     L +L +SN     L     +        LD+        I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIER 146

Query: 316 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375
           +S      +      L L+             G     E+       +++          
Sbjct: 147 NSF---VGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
               +DIS T I                                                
Sbjct: 203 GPVILDISRTRIH----------------------------------------------- 215

Query: 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 485
                L    L+NL  L   +    +     L  L     L+  SL   S
Sbjct: 216 ----SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNA-SLTDVSLHQLS 495
           V+   A      LE++ + Q  V    +     F    +L  + +  A +L  ++     
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVL--EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101

Query: 496 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
           +L  L  L I +  + +             LLD+  
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 29/183 (15%)

Query: 87  GAFRY---LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSIST 141
             F     L  + +     +      A   +  L+ L +S      + D    H L    
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 142 LE-----------------------KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD 178
           L+                        LWL++ G+     +  +  Q   +       + +
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192

Query: 179 LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL-AWTGVTKLPNISSLECLN 237
           L        +    LD+  +++ +  +  L+   +L   +      +  L  + +L   +
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252

Query: 238 LSN 240
           L+ 
Sbjct: 253 LTY 255

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 50/249 (20%)

Query: 142 LEKLWLSETGLTA--DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
             +L L+   L++  D +        ++VL++    +  L     ++   LEYLD     
Sbjct: 61  FSELQLNRLNLSSLPDNL-----PPQITVLEITQNALISL----PELPASLEYLDACD-- 109

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAK 258
             NR + + ++   L  L++    +T LP   + LE +N  N  +  + E   +      
Sbjct: 110 --NRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTS------ 161

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD--D 316
                                 L  L V N+ L+        ++LE LD+S++++     
Sbjct: 162 ----------------------LEVLSVRNNQLT--FLPELPESLEALDVSTNLLESLPA 197

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376
                               R +     I    L     + L    +       +S   +
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 377 LKFIDISNT 385
                    
Sbjct: 256 QPDYHGPRI 264

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 36/170 (21%), Positives = 51/170 (30%), Gaps = 35/170 (20%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI------- 139
                   L   +  R   + L     +  L  LDLS            L S+       
Sbjct: 49  ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH---------NQLQSLPLLGQTL 99

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
             L  L +S   LT+  +  L  L  L  L L G  +  L    L    KLE L L  + 
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
                   L   P      L            +L+ L L   ++ +I +G
Sbjct: 160 --------LTELPAGLLNGL-----------ENLDTLLLQENSLYTIPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 28/146 (19%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSLQNLSVLDL 171
             E++  +         ++L ++          L LSE  L    +A L     L+ L+L
Sbjct: 12  HLEVNCDK---------RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 172 GGLPVTDLVLRSLQV---LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP 228
                    L  LQV   L  L  LDL  +Q+ +    + +  P L+ L++++  +T LP
Sbjct: 63  DRAE-----LTKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLP 116

Query: 229 -----NISSLECLNLSNCTIDSILEG 249
                 +  L+ L L    + ++  G
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPG 142

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 92  LRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSI----STLE 143
           L+ +N+ + +RV+   + +L         +++  L+    ++D+  + L+ +     +L 
Sbjct: 43  LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLR 101

Query: 144 KLWLSETGLTADGI-ALLSSLQN---LSVLDLGGLPVTDL-------VLRSLQVLTKLEY 192
            L +    LT + +  LL S      +          + L       ++ +++    L  
Sbjct: 102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 161

Query: 193 LDLWGSQVSNRGAA 206
           + +  + +  R   
Sbjct: 162 VGISFASMEARHRV 175

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 38/214 (17%), Positives = 67/214 (31%), Gaps = 64/214 (29%)

Query: 182 RSLQVLTKLEYLDLWGSQVS-NRGAAVLKMFPRLSFLNLAWTGVTKLPNISS---LECLN 237
           R   V T+ E ++L G      +  A L        L L+   + K+ ++S    L  L+
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILS 76

Query: 238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297
           L    I  I E  +                             L  L +S + ++    +
Sbjct: 77  LGRNLIKKI-ENLDAV------------------------ADTLEELWISYNQIASLSGI 111

Query: 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357
            ++  L  L +S++ I +            +  L                  L  LE L 
Sbjct: 112 EKLVNLRVLYMSNNKITNWG---------EIDKL----------------AALDKLEDLL 146

Query: 358 LSG----------TQIDDYAISYMSMMPSLKFID 381
           L+G              +Y I  +  +P+LK +D
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 55/287 (19%), Positives = 110/287 (38%), Gaps = 61/287 (21%)

Query: 142 LEKLWLSETGLTADGI--ALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWGS 198
           +  L LS   L       + L++L  L+ L +GG+  +   +  ++  LT+L YL +  +
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 199 QVSNRGA--AVLKMFPRLSFLNLAW---TGV--TKLPNISSLECLNLSNCTIDSILEGNE 251
            VS  GA    L     L  L+ ++   +G     + ++ +L  +               
Sbjct: 112 NVS--GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG----------- 158

Query: 252 NKAPLAKISLAGT---TFINEREAFLYIETSLLSFLDVSNSSLS-----RFCFLTQMKAL 303
           N+       ++G    ++ +         + L + + +S + L+      F  L     L
Sbjct: 159 NR-------ISGAIPDSYGS-----F---SKLFTSMTISRNRLTGKIPPTFANLN----L 199

Query: 304 EHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL--AGHLPNLEILSLSG 360
             +DLS +M+ GD SV   +    N + ++L+    +      L   G   NL  L L  
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDK--NTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRN 253

Query: 361 TQIDDYAI-SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM 406
            +I    +   ++ +  L  +++S  ++ G  P G     F    + 
Sbjct: 254 NRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK---ELIHLSLRNASLTDVSLHQL 494
             + SL  L    +L  L +E  Q        L   +   EL +L++  + L  V+    
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 495 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531
               +L+ L++    L +    + +   SL+ L L G
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 90  RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE 149
           RY  S    D + + S        +  +    L+R   +         +I  L  L LS 
Sbjct: 124 RYDGSQQALDLKGLRSDPDLVAQNIDVV----LNRRSCMAATLRIIEENIPELLSLNLSN 179

Query: 150 TGLTA-DGIA-LLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG-- 204
             L   D ++ ++    NL +L+L G  +     L  ++ L KLE L L G+ + +    
Sbjct: 180 NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238

Query: 205 -----AAVLKMFPRLSFLN 218
                +A+ + FP+L  L+
Sbjct: 239 QSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	632
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.98
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.85
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.51

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.2e-56  Score=503.05  Aligned_cols=439  Identities=20%  Similarity=0.210  Sum_probs=320.4

Q ss_pred             cCcccEEeccCCCCCCHHHHH--HhccCCCccEEEcCCCCCCCchhHHhh-hCCCCcCEEeccCCCCCChhhHhh---hc
Q 006752           64 KHNAEAIELRGENSVDAEWMA--YLGAFRYLRSLNVADCRRVTSSALWAL-TGMTCLKELDLSRCVKVTDAGMKH---LL  137 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~i~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~~~---l~  137 (632)
                      +++|++|+|++|. +.+.++.  .++++++|++|++++|. +....+..+ .++++|++|++++| .+++..+..   +.
T Consensus        99 l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~  175 (768)
T 3rgz_A           99 SASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSD  175 (768)
T ss_dssp             CTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTT
T ss_pred             CCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhc
Confidence            4688999999884 5555555  78889999999999887 554444444 68889999999998 676665555   67


Q ss_pred             CCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEE
Q 006752          138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL  217 (632)
Q Consensus       138 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  217 (632)
                      ++++|++|++++|.+++..+  +..+++|++|++++|.+.+..|. ++.+++|++|++++|.+++..|..+..+++|++|
T Consensus       176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  252 (768)
T 3rgz_A          176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL  252 (768)
T ss_dssp             CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred             cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence            88999999999998876443  37889999999999999887665 8999999999999999999999999999999999


Q ss_pred             EccCCCCCC-CC--CCCCCCEEECCCCccc-chhccccC-CCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752          218 NLAWTGVTK-LP--NISSLECLNLSNCTID-SILEGNEN-KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (632)
Q Consensus       218 ~l~~n~l~~-l~--~l~~L~~L~L~~~~l~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  292 (632)
                      ++++|.+.+ ++  .+++|++|++++|.+. .+|..++. +++|++|++++|.+.+..+. .+..+++|++|++++|.+.
T Consensus       253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~  331 (768)
T 3rgz_A          253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS  331 (768)
T ss_dssp             ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred             ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCccc
Confidence            999998874 22  6789999999999998 78888776 49999999999998864433 3568999999999999987


Q ss_pred             ch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHh-cCCCCcEEEccCCCCChHHH
Q 006752          293 RF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG-HLPNLEILSLSGTQIDDYAI  368 (632)
Q Consensus       293 ~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~  368 (632)
                      +.   ..+..+++|++|++++|.+++..|..+....++|++|++++|++++..+..+.. .+++|++|++++|++++..|
T Consensus       332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  411 (768)
T 3rgz_A          332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP  411 (768)
T ss_dssp             EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred             CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence            43   348899999999999999988888888877349999999999998876655422 16789999999999998888


Q ss_pred             HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccc-cccccc-ccchhhhccccccccc--chH
Q 006752          369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYV-IFPSSV-LAGFIQQVGAETDLVL--SLT  444 (632)
Q Consensus       369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~l~~~~~~l~--~~~  444 (632)
                      ..++.+++|++|++++|++++.+|..+..+. .+      ..+........ .+|... ....++.|++++|.+.  ...
T Consensus       412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L------~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  484 (768)
T 3rgz_A          412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KL------RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS  484 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TC------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             HHHhcCCCCCEEECcCCcccCcccHHHhcCC-CC------CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence            8999999999999999999988887654321 11      11111111111 122221 1233445555555442  123


Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  516 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  516 (632)
                      .+.++++|++|++++|++++.+|.+++.+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            455555555555555555555555555555555555555555555555555555555555555555555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4e-55  Score=494.05  Aligned_cols=529  Identities=19%  Similarity=0.172  Sum_probs=412.1

Q ss_pred             hcCcccEEeccCCCCCCHHHHHH-hccCCCccEEEcCCCCCCCchhHHh---hhCCCCcCEEeccCCCCCChhhHhhhcC
Q 006752           63 FKHNAEAIELRGENSVDAEWMAY-LGAFRYLRSLNVADCRRVTSSALWA---LTGMTCLKELDLSRCVKVTDAGMKHLLS  138 (632)
Q Consensus        63 ~~~~l~~L~Ls~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~i~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~~~~l~~  138 (632)
                      .+++|++|+|++|. +.+..+.. +.++++|++|++++|. +++..+..   +.++++|++|++++| .+.+.  ..+..
T Consensus       124 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~--~~~~~  198 (768)
T 3rgz_A          124 SCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN-KISGD--VDVSR  198 (768)
T ss_dssp             GCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS-EEESC--CBCTT
T ss_pred             CCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC-ccccc--CCccc
Confidence            36899999999995 33333333 3789999999999998 87777666   789999999999999 45443  23478


Q ss_pred             CCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEE
Q 006752          139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN  218 (632)
Q Consensus       139 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  218 (632)
                      +++|++|++++|.+++..+. +..+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..  .+++|++|+
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS  275 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence            99999999999999886665 899999999999999999999999999999999999999998776654  889999999


Q ss_pred             ccCCCCC-CCC----C-CCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCC
Q 006752          219 LAWTGVT-KLP----N-ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (632)
Q Consensus       219 l~~n~l~-~l~----~-l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l  291 (632)
                      +++|.++ .++    . +++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            9999876 333    3 489999999999998 67778889999999999999998544433466899999999999998


Q ss_pred             Cch--hhhhcCC-CCCeeeccCCCCCchHHHHHHhc-CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752          292 SRF--CFLTQMK-ALEHLDLSSSMIGDDSVEMVACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  367 (632)
Q Consensus       292 ~~~--~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  367 (632)
                      ++.  ..+..++ +|++|++++|.+++..+..+... .++|++|++++|++++..+..+ +.+++|++|++++|++++..
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcc
Confidence            744  5566666 89999999998887666655541 2689999999998888777666 67889999999999888888


Q ss_pred             HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccc-cccccc-ccchhhhccccccccc--ch
Q 006752          368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYV-IFPSSV-LAGFIQQVGAETDLVL--SL  443 (632)
Q Consensus       368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~l~~~~~~l~--~~  443 (632)
                      |..++.+++|++|++++|.+++.+|..+..+ ..      .+.+........ .+|... -...++.|++++|.+.  ..
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~------L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KT------LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TT------CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CC------ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence            8888888999999999999888878765432 11      222222222222 233332 2356889999999884  23


Q ss_pred             HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC-----------------------
Q 006752          444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL-----------------------  500 (632)
Q Consensus       444 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------------  500 (632)
                      ..++++++|++|+|++|.+++.+|..++.+++|+.|++++|++++.+|..+..+..+                       
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC  587 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence            578999999999999999999999999999999999999999998888776554333                       


Q ss_pred             -----------------------cEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccc
Q 006752          501 -----------------------TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELS  557 (632)
Q Consensus       501 -----------------------~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~  557 (632)
                                             ..++++.|.+++..|..+..+++|++||+++|++ .+..+..+. ..+.       .
T Consensus       588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~-~l~~-------L  658 (768)
T 3rgz_A          588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKEIG-SMPY-------L  658 (768)
T ss_dssp             CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCGGGG-GCTT-------C
T ss_pred             cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc-cccCCHHHh-cccc-------C
Confidence                                   3344555778888888888888888888888887 333332222 2222       3


Q ss_pred             cccCCCCCCCCCCCCCcchhhhhh------hcccCCCCCCCccchhcccccCHHHHHHhhcccccccCCCC
Q 006752          558 VICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDD  622 (632)
Q Consensus       558 ~~~~~~~n~~~g~ip~~~~~~~~~------~n~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~l~g~ip~~  622 (632)
                      +..++++|+++|.||..++.+..+      .|+++|.+|.....+.      .++.|||++|+|+|.||+.
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~------~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT------MLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC------CCSEEECCSSEEEEECCSS
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC------CCCEEECcCCcccccCCCc
Confidence            566788888888888888887766      7888885554433333      6778899999999999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3e-51  Score=452.21  Aligned_cols=488  Identities=17%  Similarity=0.180  Sum_probs=337.2

Q ss_pred             HHHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCC
Q 006752           24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV  103 (632)
Q Consensus        24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i  103 (632)
                      ...++|....++.+|..++.                      .+++|+|++| .++...+..|+++++|++|++++|. +
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~----------------------~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i   69 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPN----------------------STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-I   69 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCT----------------------TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-C
T ss_pred             CceEECCCCCcccCcCCCCC----------------------cCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-c
Confidence            34667888999999977655                      5777777777 3555445667777777777777776 6


Q ss_pred             CchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHh
Q 006752          104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS  183 (632)
Q Consensus       104 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  183 (632)
                      ....+.+|+++++|++|++++| .++...+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..
T Consensus        70 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (606)
T 3t6q_A           70 YWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK  148 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred             ceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc
Confidence            6666677777777777777777 566666667777777777777777777665666777777777777777776643334


Q ss_pred             ccCCCCccEEEecCCCCCchhhHhhcCCCCCc--EEEccCCCCCCCCC----CC--------------------------
Q 006752          184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS--FLNLAWTGVTKLPN----IS--------------------------  231 (632)
Q Consensus       184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~l~~----l~--------------------------  231 (632)
                      +..+++|++|++++|.+++..+..++.+++|+  .|++++|.+.+++.    ..                          
T Consensus       149 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~  228 (606)
T 3t6q_A          149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ  228 (606)
T ss_dssp             TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEE
T ss_pred             ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchh
Confidence            44477777777777777776677777777777  67777766553220    00                          


Q ss_pred             --------------------------CCCEEECCCCcccchhcc-ccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEE
Q 006752          232 --------------------------SLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFL  284 (632)
Q Consensus       232 --------------------------~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  284 (632)
                                                +|++|++++|.+..++.. +..+++|++|++++|.+..+|..  +..+++|++|
T Consensus       229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L  306 (606)
T 3t6q_A          229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKL  306 (606)
T ss_dssp             EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS--CCSCTTCCEE
T ss_pred             heechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh--hcccccCCEE
Confidence                                      455566666666655544 44666777777777766665543  3456667777


Q ss_pred             eccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHH-HHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCCcEEEcc
Q 006752          285 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLS  359 (632)
Q Consensus       285 ~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~  359 (632)
                      ++++|.+...  ..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.+++..  +..+ +.+++|++|+++
T Consensus       307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~  384 (606)
T 3t6q_A          307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLS  384 (606)
T ss_dssp             ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECC
T ss_pred             ECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc-CcCCEEECCCCccccccCcchhc-ccCCCCCEEECC
Confidence            7777766665  35666667777777766665433322 3333 66777777776666543  3333 456667777777


Q ss_pred             CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccc--cchhhhccccc
Q 006752          360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVL--AGFIQQVGAET  437 (632)
Q Consensus       360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~  437 (632)
                      +|++++..+..+..+++|++|++++|++.+..+.........+..+..      ........+...+  ...++.|++++
T Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL------SHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC------TTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC------CCCccCCcCHHHHhCCCCCCEEECCC
Confidence            776666666666666677777777776666544432111111221111      1112222222222  34688888888


Q ss_pred             ccccc-----hHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          438 DLVLS-----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       438 ~~l~~-----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      |.+..     ...+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..+++| +|++++|++++
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            87743     2468999999999999999999889999999999999999999999999999999999 99999999999


Q ss_pred             CCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          513 SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      ..|..+..+++|+.|++++|++.|+|...++.++.
T Consensus       538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          538 ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             CCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred             cCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence            98888888999999999999999998876666555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-49  Score=437.36  Aligned_cols=482  Identities=16%  Similarity=0.116  Sum_probs=332.5

Q ss_pred             HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (632)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~  104 (632)
                      ..++|.+..++.+|..++.                      ++++|+|++| .+.+..+..|+++++|++|++++|. ++
T Consensus        14 ~~~~c~~~~l~~ip~~~~~----------------------~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~   69 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIPS----------------------STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IE   69 (606)
T ss_dssp             TEEECTTSCCSSCCTTSCT----------------------TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred             CceEccCCCcccCCCCCCC----------------------CcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-cc
Confidence            4678888999999976543                      6888999988 4555555678888899999999887 88


Q ss_pred             chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCCh-HHHHh
Q 006752          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRS  183 (632)
Q Consensus       105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~  183 (632)
                      ...+.+|.++++|++|++++| .++...+..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+ .+|..
T Consensus        70 ~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~  148 (606)
T 3vq2_A           70 TIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY  148 (606)
T ss_dssp             EECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             ccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh
Confidence            777778888899999999888 6777777888888999999999988887666678888899999999888875 45778


Q ss_pred             ccCCCCccEEEecCCCCCchhhHhhcCCCCC----cEEEccCCCCCCCC----CCCCCCEEECCCCccc-----------
Q 006752          184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP----NISSLECLNLSNCTID-----------  244 (632)
Q Consensus       184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~-----------  244 (632)
                      ++++++|++|++++|.+++..+..++.+++|    .++++++|.++.++    ...+|++|++++|.+.           
T Consensus       149 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l  228 (606)
T 3vq2_A          149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL  228 (606)
T ss_dssp             GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred             HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccc
Confidence            8888899999999888887766666555444    36777777766533    2235666666655432           


Q ss_pred             -----------------------------------------------chhccccCCCCCcEEEeeCCCCCchhhhhhhhc
Q 006752          245 -----------------------------------------------SILEGNENKAPLAKISLAGTTFINEREAFLYIE  277 (632)
Q Consensus       245 -----------------------------------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  277 (632)
                                                                     +....+..+++|+.|++++|.+..++   .+..
T Consensus       229 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~  305 (606)
T 3vq2_A          229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPK  305 (606)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCT
T ss_pred             cccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccc
Confidence                                                           11111334556666666666665554   3345


Q ss_pred             CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCCcE
Q 006752          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEI  355 (632)
Q Consensus       278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~  355 (632)
                      +++|++|++++|.+..++.+ .+++|++|++++|...+..  .+..+ ++|++|++++|++++..  +..+ ..+++|++
T Consensus       306 ~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~  380 (606)
T 3vq2_A          306 HFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSD-LGTNSLRH  380 (606)
T ss_dssp             TCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHH-HCCSCCCE
T ss_pred             cccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccC-CCCCEEECcCCccCCCcchhhhh-ccCCcccE
Confidence            56666666666666555544 5666666666666433222  12222 55666666666655442  3333 44566666


Q ss_pred             EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCC-Cccchhhhhhhhhhhhhceecccccccccccc--ccchhhh
Q 006752          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS-GQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV--LAGFIQQ  432 (632)
Q Consensus       356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~  432 (632)
                      |++++|.+++. +..+..+++|++|++++|++.+..|. .+.. ...+..+      ..........+...  ....++.
T Consensus       381 L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          381 LDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYL------DISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             EECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEE------ECTTSCCEECCTTTTTTCTTCCE
T ss_pred             eECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEE------ECcCCCCCccchhhhcCCCCCCE
Confidence            66666655442 24455556666666666666555442 2211 1111111      11111111111111  1246788


Q ss_pred             cccccccccc---hHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752          433 VGAETDLVLS---LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  509 (632)
Q Consensus       433 l~~~~~~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~  509 (632)
                      |++++|.+..   ...+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            8888887753   3468889999999999999999888999999999999999999999989999999999999999999


Q ss_pred             eccCCCCCCCCCC-CcceEecCCCcccChHHHHHHHHHcC
Q 006752          510 LTNSGLGSFKPPR-SLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       510 l~~~~~~~l~~~~-~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      ++.. |..+..++ +|++|++++|++.|+|...++.++..
T Consensus       533 l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~  571 (606)
T 3vq2_A          533 IETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK  571 (606)
T ss_dssp             CCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred             Cccc-CHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence            9964 66687776 69999999999999998888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-47  Score=422.07  Aligned_cols=468  Identities=18%  Similarity=0.144  Sum_probs=334.8

Q ss_pred             ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEE
Q 006752           67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW  146 (632)
Q Consensus        67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~  146 (632)
                      -++++.++.. ++ .+|..+  -+++++|++++|. ++...+.+|.++++|++|++++| .+....+..|.++++|++|+
T Consensus        14 ~~~~~c~~~~-l~-~iP~~l--~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~   87 (606)
T 3t6q_A           14 NKTYNCENLG-LN-EIPGTL--PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLV   87 (606)
T ss_dssp             TTEEECTTSC-CS-SCCTTS--CTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CceEECCCCC-cc-cCcCCC--CCcCcEEEccCCc-cCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeee
Confidence            3466666653 22 122222  2479999999999 88888889999999999999999 78888888999999999999


Q ss_pred             ccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC
Q 006752          147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK  226 (632)
Q Consensus       147 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  226 (632)
                      +++|.+++..+..|..+++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.++.
T Consensus        88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            99999998888899999999999999999999878889999999999999999988654556669999999999999987


Q ss_pred             C-----CCCCCCC--EEECCCCcccchhccccCCCCCcEEEeeCC-----------------------------------
Q 006752          227 L-----PNISSLE--CLNLSNCTIDSILEGNENKAPLAKISLAGT-----------------------------------  264 (632)
Q Consensus       227 l-----~~l~~L~--~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n-----------------------------------  264 (632)
                      +     ..+++|+  +|++++|.+..+++..+....|++|++++|                                   
T Consensus       168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence            4     3788888  899999999987776666665555555554                                   


Q ss_pred             -----------------CCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752          265 -----------------TFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGA  326 (632)
Q Consensus       265 -----------------~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  326 (632)
                                       .+.++++. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+ +
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~  325 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-P  325 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-T
T ss_pred             hchhhcCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-C
Confidence                             44333322 233445555555555555544 334445555555555555554444444444 5


Q ss_pred             CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH--HHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752          327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC  404 (632)
Q Consensus       327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  404 (632)
                      +|++|++++|.+.+..+...++.+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..       
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------  398 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-------  398 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-------
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-------
Confidence            55555555555443332222244555555555555554433  344455555555555555555444433211       


Q ss_pred             hhhhhhceeccccccccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccccccCccccccccc
Q 006752          405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL  481 (632)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  481 (632)
                                            ...++.+++++|.+...   ..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus       399 ----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          399 ----------------------CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             ----------------------CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             ----------------------CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence                                  24677888888877432   24788999999999999999988888999999999999


Q ss_pred             ccccCCCc---chhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeecccc
Q 006752          482 RNASLTDV---SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSV  558 (632)
Q Consensus       482 s~n~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~  558 (632)
                      ++|++++.   .+..+..+++|++|++++|++++..|..|..+++|++|++++|++ .+..+..+. ..+       .. 
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~-~l~-------~L-  526 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALS-HLK-------GI-  526 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CGGGGGGGT-TCC-------SC-
T ss_pred             CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc-CcCChhHhC-ccc-------cc-
Confidence            99999873   235688999999999999999999899999999999999999997 333332221 121       12 


Q ss_pred             ccCCCCCCCCCCCCCcchhhhhh
Q 006752          559 ICPSDQIGSNGPSPSRTSLRASL  581 (632)
Q Consensus       559 ~~~~~~n~~~g~ip~~~~~~~~~  581 (632)
                      ..++++|++++..|..++.+..+
T Consensus       527 ~L~L~~N~l~~~~~~~~~~l~~L  549 (606)
T 3t6q_A          527 YLNLASNHISIILPSLLPILSQQ  549 (606)
T ss_dssp             EEECCSSCCCCCCGGGHHHHHTS
T ss_pred             EEECcCCcccccCHhhcccCCCC
Confidence            56788999998888887776544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.4e-48  Score=433.66  Aligned_cols=524  Identities=17%  Similarity=0.158  Sum_probs=294.6

Q ss_pred             HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (632)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~  104 (632)
                      +.++|++..++.+|..++.                      ++++|+|++|. +....+..|+++++|++|++++|. ++
T Consensus         7 ~~~~cs~~~L~~ip~~~~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~   62 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLPT----------------------NITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT-IS   62 (680)
T ss_dssp             SEEECCSSCCSSCCSCSCT----------------------TCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSC-CC
T ss_pred             CeeECCCCCccccccccCC----------------------CCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCc-cC
Confidence            4567888889999976543                      45555555552 333333345555555555555554 44


Q ss_pred             chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhc
Q 006752          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL  184 (632)
Q Consensus       105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l  184 (632)
                      ...+.+|+++++|++|++++| .++......|+++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+
T Consensus        63 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  141 (680)
T 1ziw_A           63 KLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ  141 (680)
T ss_dssp             CCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred             ccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence            444445555555555555555 3444333345555555555555555554444445555555555555555554444444


Q ss_pred             cCCCCccEEEecCCCCCchhhHhhc--CCCCCcEEEccCCCCCCCC--------------------------------CC
Q 006752          185 QVLTKLEYLDLWGSQVSNRGAAVLK--MFPRLSFLNLAWTGVTKLP--------------------------------NI  230 (632)
Q Consensus       185 ~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~l~--------------------------------~l  230 (632)
                      +++++|++|++++|.+++..+..+.  .+++|++|++++|.+++++                                ..
T Consensus       142 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~  221 (680)
T 1ziw_A          142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN  221 (680)
T ss_dssp             SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred             cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence            5555555555555555544444332  2345555555555444321                                01


Q ss_pred             CCCCEEECCCCcccchh-ccccCC--CCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCe
Q 006752          231 SSLECLNLSNCTIDSIL-EGNENK--APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEH  305 (632)
Q Consensus       231 ~~L~~L~L~~~~l~~~~-~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~  305 (632)
                      ++|++|++++|.+.+++ ..+..+  ++|++|++++|.+.++++. .+..+++|++|++++|.+.+.  ..+..+++|++
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  300 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY  300 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence            34555555555554322 222222  2355555555555544322 234455555555555555544  34444555555


Q ss_pred             eeccCCCCCchHH---------HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC----------------
Q 006752          306 LDLSSSMIGDDSV---------EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG----------------  360 (632)
Q Consensus       306 L~l~~n~l~~~~~---------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~----------------  360 (632)
                      |++++|...+...         ..+..+ ++|++|++++|.+++..+..+ ..+++|++|++++                
T Consensus       301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~  378 (680)
T 1ziw_A          301 LNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSL  378 (680)
T ss_dssp             EECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred             EeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhccc
Confidence            5554433221110         012222 445555555555544433333 3344555555544                


Q ss_pred             ------------CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccc--
Q 006752          361 ------------TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVL--  426 (632)
Q Consensus       361 ------------n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  426 (632)
                                  |++++..+.++..+++|+.|++++|.+++.+|.                              ..+  
T Consensus       379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------~~~~~  428 (680)
T 1ziw_A          379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------------------------------QEWRG  428 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS------------------------------GGGTT
T ss_pred             ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc------------------------------ccccC
Confidence                        444444444444444555555555544443332                              111  


Q ss_pred             cchhhhcccccccccc--hHHhhcCCcccccccCccCCC--CCccccccCcccccccccccccCCCcchhhhccCCCCcE
Q 006752          427 AGFIQQVGAETDLVLS--LTALQNLNHLERLNLEQTQVS--DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  502 (632)
Q Consensus       427 ~~~l~~l~~~~~~l~~--~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  502 (632)
                      ...++.+++++|.+..  ...+..+++|++|++++|.++  +..|..|..+++|++|++++|++++..+..|..+++|++
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence            2356777787777643  246788899999999999886  557888889999999999999999988888999999999


Q ss_pred             EeecCceeccCCC--------CCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCc
Q 006752          503 LSIRDAVLTNSGL--------GSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSR  574 (632)
Q Consensus       503 L~ls~N~l~~~~~--------~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~  574 (632)
                      |++++|++++..+        ..|..+++|++|++++|++..  .+.......+       ..+..++++|++++..|..
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~-------~L~~L~Ls~N~l~~l~~~~  579 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE--IPVEVFKDLF-------ELKIIDLGLNNLNTLPASV  579 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT-------TCCEEECCSSCCCCCCTTT
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC--CCHHHccccc-------CcceeECCCCCCCcCCHhH
Confidence            9999999987532        236788999999999998742  1111111222       2456678899999776666


Q ss_pred             chhhhhh------hcccCCCCCCCccchhcccccCHHHHHHhhcccccccCC
Q 006752          575 TSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP  620 (632)
Q Consensus       575 ~~~~~~~------~n~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~l~g~ip  620 (632)
                      +..+..+      .|++++  ..+..+-.   .++.++.++|++|.+.+.-+
T Consensus       580 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~---~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLITS--VEKKVFGP---AFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTTCTTCCEEECTTSCCCB--CCHHHHHH---HHTTCSEEECTTCCCCBCCC
T ss_pred             hCCCCCCCEEECCCCcCCc--cChhHhcc---cccccCEEEccCCCcccCCc
Confidence            6665544      666666  22221110   12356678999999999655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=420.61  Aligned_cols=457  Identities=18%  Similarity=0.180  Sum_probs=351.9

Q ss_pred             HHHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCC
Q 006752           24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV  103 (632)
Q Consensus        24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i  103 (632)
                      ...++|....+..+|..++.                      ++++|++++|. ++...+..|.++++|++|++++|. +
T Consensus         9 ~~~~~c~~~~l~~ip~~l~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i   64 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-I   64 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSCS----------------------SCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCC-C
T ss_pred             CcEEEeCCCCccccCCCccc----------------------cccEEEccCCc-cCccChhHhhCCCCceEEECCCCc-C
Confidence            34567788888888875443                      69999999994 555555678899999999999998 8


Q ss_pred             CchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCCh-HHHH
Q 006752          104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLR  182 (632)
Q Consensus       104 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~  182 (632)
                      +...+.+|+++++|++|++++| .++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|.
T Consensus        65 ~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~  143 (570)
T 2z63_A           65 QTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  143 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh
Confidence            8877888999999999999999 6887777888999999999999999887655568899999999999999887 3578


Q ss_pred             hccCCCCccEEEecCCCCCchhhHhhcCCCCC----cEEEccCCCCCCCC----CCCCCCEEECCCCc------------
Q 006752          183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP----NISSLECLNLSNCT------------  242 (632)
Q Consensus       183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~l~----~l~~L~~L~L~~~~------------  242 (632)
                      .++++++|++|++++|.+++..+..+..+++|    +.+++++|.+..++    ...+|++|++++|.            
T Consensus       144 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  223 (570)
T 2z63_A          144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG  223 (570)
T ss_dssp             GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT
T ss_pred             hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcC
Confidence            89999999999999999988877778777777    88999988877543    12256666665541            


Q ss_pred             ----------------------------------------------cc-chhccccCCCCCcEEEeeCCCCCchhhhhhh
Q 006752          243 ----------------------------------------------ID-SILEGNENKAPLAKISLAGTTFINEREAFLY  275 (632)
Q Consensus       243 ----------------------------------------------l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  275 (632)
                                                                    +. ..+..+..+++|++|++++|.+..++..+  
T Consensus       224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~--  301 (570)
T 2z63_A          224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--  301 (570)
T ss_dssp             TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCC--
T ss_pred             ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhh--
Confidence                                                          11 12333446678888888888777665542  


Q ss_pred             hcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCC
Q 006752          276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNL  353 (632)
Q Consensus       276 ~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L  353 (632)
                      ..+ +|++|++++|.+..++. ..+++|++|++++|.+.+..+.  .. +++|++|++++|++++..  +..+ ..+++|
T Consensus       302 ~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~-~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L  375 (570)
T 2z63_A          302 YNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE--VD-LPSLEFLDLSRNGLSFKGCCSQSD-FGTTSL  375 (570)
T ss_dssp             SCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC--CB-CTTCCEEECCSSCCBEEEEEEHHH-HTCSCC
T ss_pred             ccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc--cc-CCCCCEEeCcCCccCccccccccc-cccCcc
Confidence            344 78888888888776544 4677888888888776654433  22 377888888888777653  3333 567888


Q ss_pred             cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCC-ccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG-QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ  432 (632)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (632)
                      ++|++++|.+++..+. +..+++|++|++++|.+.+..|.. +..                             ...++.
T Consensus       376 ~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------l~~L~~  425 (570)
T 2z63_A          376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS-----------------------------LRNLIY  425 (570)
T ss_dssp             CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT-----------------------------CTTCCE
T ss_pred             CEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc-----------------------------CCCCCE
Confidence            8888888877765444 677788888888888877665431 111                             134556


Q ss_pred             cccccccccc--hHHhhcCCcccccccCccCCC-CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752          433 VGAETDLVLS--LTALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  509 (632)
Q Consensus       433 l~~~~~~l~~--~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~  509 (632)
                      +++++|.+..  ...+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|.+|..+++|++|++++|+
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            6666665532  246788999999999999998 5688899999999999999999999889999999999999999999


Q ss_pred             eccCCCCCCCCCCCcceEecCCCcccChHHHHHH
Q 006752          510 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF  543 (632)
Q Consensus       510 l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~  543 (632)
                      +++..+..|..+++|+.|++++|++.|.+...++
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             CCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            9999888899999999999999999887754333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-45  Score=409.27  Aligned_cols=493  Identities=17%  Similarity=0.159  Sum_probs=312.7

Q ss_pred             cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      +++|++|+|++|. +.+..+..|+++++|++|++++|. ++..+..+|+++++|++|++++| .++...+..|+++++|+
T Consensus        48 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           48 YSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCC
T ss_pred             CCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCC
Confidence            4567777777663 444445556666777777777666 65555555666777777777766 45555455566666677


Q ss_pred             EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhcc--CCCCccEEEecCCCCCchhhHhhcCC----------
Q 006752          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMF----------  211 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l----------  211 (632)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+..+          
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            777776666665555566666666666666666655554443  34566666666666555444433322          


Q ss_pred             -----------------CC--------------------------CcEEEccCCCCCC-----CCCCCCCCEEECCCCcc
Q 006752          212 -----------------PR--------------------------LSFLNLAWTGVTK-----LPNISSLECLNLSNCTI  243 (632)
Q Consensus       212 -----------------~~--------------------------L~~L~l~~n~l~~-----l~~l~~L~~L~L~~~~l  243 (632)
                                       ++                          |++|++++|.++.     +..+++|++|++++|.+
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence                             23                          4555555444432     22345555555555555


Q ss_pred             cch-hccccCCCCCcEEEeeCCCCCc------hh--hhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCC
Q 006752          244 DSI-LEGNENKAPLAKISLAGTTFIN------ER--EAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM  312 (632)
Q Consensus       244 ~~~-~~~~~~~~~L~~L~l~~n~~~~------~~--~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~  312 (632)
                      .++ +..+..+++|++|++++|...+      ++  ....+..+++|++|++++|.+.+.  ..+..+++|++|++++|.
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            432 2233445555555554443221      11  112455788999999999999887  558889999999999887


Q ss_pred             CCc--hHHHHHHhc-CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH-HHHhcCCCccEEEccCCccc
Q 006752          313 IGD--DSVEMVACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIK  388 (632)
Q Consensus       313 l~~--~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~i~  388 (632)
                      +..  .....+... .++|++|++++|++++..+..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|++.
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  443 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL  443 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence            432  111222221 1579999999999888777665 678899999999998876544 56888899999999999988


Q ss_pred             cccCCCccchhhhhhhhhhhhhceecccccccccccc-ccchhhhcccccccccch--HHhhcCCcccccccCccCCCCC
Q 006752          389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV-LAGFIQQVGAETDLVLSL--TALQNLNHLERLNLEQTQVSDA  465 (632)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~l~~~--~~l~~l~~L~~L~Ls~n~l~~~  465 (632)
                      +..+..+..+ ..+..+....+...   ....+|..+ -...++.+++++|.+..+  ..+.++++|++|++++|.+++.
T Consensus       444 ~~~~~~~~~~-~~L~~L~l~~n~l~---~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          444 QLTRNSFALV-PSLQRLMLRRVALK---NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             ECCTTTTTTC-TTCCEEECTTSCCB---CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred             eeChhhhhcC-cccccchhcccccc---ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence            7766554322 11111111111110   001223222 134678888888887544  3478888999999999988864


Q ss_pred             cc--------ccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752          466 TL--------FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE  537 (632)
Q Consensus       466 ~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~  537 (632)
                      .+        ..|..+++|++|+|++|+++.+.+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++ ++
T Consensus       520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~  598 (680)
T 1ziw_A          520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI-TS  598 (680)
T ss_dssp             GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC-CB
T ss_pred             chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC-Cc
Confidence            22        2367788999999999999887667788899999999999999988777788888999999999987 33


Q ss_pred             HHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCC
Q 006752          538 DAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP  572 (632)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip  572 (632)
                      ..+..+....+.       ....++++|.+....+
T Consensus       599 ~~~~~~~~~~~~-------L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          599 VEKKVFGPAFRN-------LTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCHHHHHHHHTT-------CSEEECTTCCCCBCCC
T ss_pred             cChhHhcccccc-------cCEEEccCCCcccCCc
Confidence            333333323332       2345566777666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-44  Score=395.12  Aligned_cols=452  Identities=18%  Similarity=0.194  Sum_probs=330.1

Q ss_pred             HHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCch
Q 006752           27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS  106 (632)
Q Consensus        27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~  106 (632)
                      ++|+...++.+|..++                      +++++|++++|. +++..+..|+++++|++|++++|. ++..
T Consensus        10 c~~~~~~l~~ip~~~~----------------------~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~   65 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT----------------------AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTI   65 (549)
T ss_dssp             EECTTSCCSSCCSCCC----------------------TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEE
T ss_pred             EECCCCccccccccCC----------------------CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCcc
Confidence            4556677888886533                      368888888884 555555677888888888888887 7777


Q ss_pred             hHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHh-HHHHhcCCCCCCEEEcCCCC-CChHHHHhc
Q 006752          107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLP-VTDLVLRSL  184 (632)
Q Consensus       107 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l  184 (632)
                      .+.+|.++++|++|++++| .++...+..++++++|++|++++|.+++. .+..+..+++|++|++++|. +....+..+
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             ChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence            7778888888888888888 67777777788888888888888888753 34567788888888888887 444334577


Q ss_pred             cCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECCCCcccchh---cc-ccCCCC
Q 006752          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL---EG-NENKAP  255 (632)
Q Consensus       185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~~~~l~~~~---~~-~~~~~~  255 (632)
                      .++++|++|++++|.+++..|..+..+++|++|++++|.+..++     .+++|++|++++|.+.+++   .. ...+++
T Consensus       145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence            88888888888888888877778887778888887777766533     4677777777777776542   11 124566


Q ss_pred             CcEEEeeCCCCCchhhhh---hhhcCCCccEEeccCCCCCc------------------------------hh-------
Q 006752          256 LAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSR------------------------------FC-------  295 (632)
Q Consensus       256 L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~ls~n~l~~------------------------------~~-------  295 (632)
                      |+.|++++|.+.+.....   ....+++|+.+++++|.+.+                              ..       
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~  304 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST  304 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred             ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence            777777776665422111   12234455555555554332                              21       


Q ss_pred             hhhcCCCCCeeeccCCCCCchHHHHH-HhcCCCCcEEEccCCcCcchhHHHH--HhcCCCCcEEEccCCCCChHHH--HH
Q 006752          296 FLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRNLNLSNTRFSSAGVGIL--AGHLPNLEILSLSGTQIDDYAI--SY  370 (632)
Q Consensus       296 ~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~--~~  370 (632)
                      .+...++|+.|++++|.+.. .|..+ ..+ ++|++|++++|++++..+...  .+.+++|++|++++|++++..+  ..
T Consensus       305 ~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  382 (549)
T 2z81_A          305 VYSLLEKVKRITVENSKVFL-VPCSFSQHL-KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI  382 (549)
T ss_dssp             HHHHSTTCCEEEEESSCCCC-CCHHHHHHC-TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred             hhhhcccceEEEeccCcccc-CCHHHHhcC-ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence            12334678888888888874 44444 445 889999999998888665431  3567889999999998887643  56


Q ss_pred             HhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCC
Q 006752          371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN  450 (632)
Q Consensus       371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~  450 (632)
                      +..+++|++|++++|++++ +|..+..                             ...++.|++++|.+..++.. -.+
T Consensus       383 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~-----------------------------~~~L~~L~Ls~N~l~~l~~~-~~~  431 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFHP-MPDSCQW-----------------------------PEKMRFLNLSSTGIRVVKTC-IPQ  431 (549)
T ss_dssp             GGGCTTCCEEECTTCCCCC-CCSCCCC-----------------------------CTTCCEEECTTSCCSCCCTT-SCT
T ss_pred             hhcCCCCCEEECCCCCCcc-CChhhcc-----------------------------cccccEEECCCCCcccccch-hcC
Confidence            7888899999999998885 4553321                             24577788888887533221 126


Q ss_pred             cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752          451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  530 (632)
Q Consensus       451 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~  530 (632)
                      +|++|++++|++++..    ..+++|++|+|++|+++. +|. ...+++|++|++++|++++..|..|..+++|+.|+++
T Consensus       432 ~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             CceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence            8999999999999843    478999999999999996 454 4679999999999999999988889999999999999


Q ss_pred             CCcccChHHHHH
Q 006752          531 GGWLLTEDAILQ  542 (632)
Q Consensus       531 ~N~l~~~~~~~~  542 (632)
                      +|++.|+|....
T Consensus       506 ~N~~~~~~~~~~  517 (549)
T 2z81_A          506 TNPWDCSCPRID  517 (549)
T ss_dssp             SSCBCCCHHHHH
T ss_pred             CCCccCCCccHH
Confidence            999999887433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=419.31  Aligned_cols=482  Identities=18%  Similarity=0.197  Sum_probs=289.3

Q ss_pred             HHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCc
Q 006752           26 KWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS  105 (632)
Q Consensus        26 ~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~  105 (632)
                      .++|+...++.+|. ++.                      ++++|||++| .++...+..|+++++|++|+|++|..+..
T Consensus         8 ~~dcs~~~L~~vP~-lp~----------------------~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~   63 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-VLN----------------------TTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLT   63 (844)
T ss_dssp             EEEESCCCSSCCCS-SCT----------------------TCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCE
T ss_pred             EEEccCCCCCCCCC-CCC----------------------CcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccc
Confidence            45677888999986 443                      6888888888 46555566778888888888888864555


Q ss_pred             hhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHH--hcCCCCCCEEEcCCCCCChHHH-H
Q 006752          106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVL-R  182 (632)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~  182 (632)
                      ..+.+|.++++|++|+|++| .+....+..|.++++|++|+|++|.+++..+..  |..+++|++|++++|.+.+..+ .
T Consensus        64 i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  142 (844)
T 3j0a_A           64 IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP  142 (844)
T ss_dssp             ECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred             cCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence            55677888888888888888 677777778888888888888888887644443  7788888888888888876543 4


Q ss_pred             hccCCCCccEEEecCCCCCchhhHhhcCC--CCCcEEEccCCCCCC-----CCCCC------CCCEEECCCCccc-chhc
Q 006752          183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTK-----LPNIS------SLECLNLSNCTID-SILE  248 (632)
Q Consensus       183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~-----l~~l~------~L~~L~L~~~~l~-~~~~  248 (632)
                      .|+++++|++|++++|.+++..+..+..+  ++|+.|++++|.+..     +..++      .|++|++++|.+. ..+.
T Consensus       143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG  222 (844)
T ss_dssp             GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred             hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence            67888888888888888877666655544  555555555554433     11111      1455555554332 1111


Q ss_pred             ccc--------------------------------------CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752          249 GNE--------------------------------------NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (632)
Q Consensus       249 ~~~--------------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~  290 (632)
                      .+.                                      ..++|+.|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus       223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~  301 (844)
T 3j0a_A          223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNK  301 (844)
T ss_dssp             GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCC
T ss_pred             HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCc
Confidence            100                                      013344444444444333221 22334444444444444


Q ss_pred             CCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752          291 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  368 (632)
Q Consensus       291 l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (632)
                      +...  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++.+..+..+ ..+++|++|++++|.+++   
T Consensus       302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~---  376 (844)
T 3j0a_A          302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTT---  376 (844)
T ss_dssp             CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCCSCC---
T ss_pred             CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC-CCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCCCCc---
Confidence            4433  233344444444444444443333333333 444444444444433322222 234444444444444332   


Q ss_pred             HHHhcCCCccEEEccCCccccccCCCccch---------------hhhhhhhhhhhhceeccccccccccc---cccchh
Q 006752          369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNV---------------FFSAYCFMIVYNLFLHAYGYVIFPSS---VLAGFI  430 (632)
Q Consensus       369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l  430 (632)
                        +..+++|+.|++++|+++.. |......               ......+.....+....+....++..   .....+
T Consensus       377 --i~~~~~L~~L~l~~N~l~~l-~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L  453 (844)
T 3j0a_A          377 --IHFIPSIPDIFLSGNKLVTL-PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL  453 (844)
T ss_dssp             --CSSCCSCSEEEEESCCCCCC-CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC
T ss_pred             --ccCCCCcchhccCCCCcccc-cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc
Confidence              11133333333333333221 1100000               00000111111222222222111111   113567


Q ss_pred             hhcccccccccch-------HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEE
Q 006752          431 QQVGAETDLVLSL-------TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL  503 (632)
Q Consensus       431 ~~l~~~~~~l~~~-------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  503 (632)
                      +.|++++|.+...       ..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+.  ++|+.|
T Consensus       454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L  531 (844)
T 3j0a_A          454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL  531 (844)
T ss_dssp             CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred             ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence            8888888877421       3578899999999999999999999999999999999999999998777776  899999


Q ss_pred             eecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHH
Q 006752          504 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM  546 (632)
Q Consensus       504 ~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~  546 (632)
                      ++++|++++..|..|   .+|+.+++++|++.|+|...++..+
T Consensus       532 ~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~  571 (844)
T 3j0a_A          532 DISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINW  571 (844)
T ss_dssp             EEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred             ECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHH
Confidence            999999999988876   4789999999999999876555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.6e-44  Score=395.65  Aligned_cols=425  Identities=16%  Similarity=0.144  Sum_probs=314.5

Q ss_pred             ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEE
Q 006752           67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW  146 (632)
Q Consensus        67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~  146 (632)
                      -++++.++++ ++. +|..+  .++|++|++++|. ++...+..|+++++|++|++++| .++...+..|.++++|++|+
T Consensus        13 ~~~~~c~~~~-l~~-ip~~~--~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQK-LSK-VPDDI--PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSC-CSS-CCTTS--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCceEccCCC-ccc-CCCCC--CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeE
Confidence            4578888774 322 12222  2789999999998 88888889999999999999999 78888788899999999999


Q ss_pred             ccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCcEEEccCCCCC
Q 006752          147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT  225 (632)
Q Consensus       147 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~  225 (632)
                      +++|.+++..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+++ ..|..++++++|++|++++|.++
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            99999998888899999999999999999988777789999999999999999986 56889999999999999999988


Q ss_pred             CCC-----CCCC----CCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhh----------------------
Q 006752          226 KLP-----NISS----LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFL----------------------  274 (632)
Q Consensus       226 ~l~-----~l~~----L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----------------------  274 (632)
                      +++     .+++    +.+|++++|.++.++...+...+|++|++++|.+.+......                      
T Consensus       167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            754     2222    558999999999999888877799999999997752111111                      


Q ss_pred             ----------------------------------hhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHH
Q 006752          275 ----------------------------------YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM  320 (632)
Q Consensus       275 ----------------------------------~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  320 (632)
                                                        +..+++|+.|++++|.+..++.+..+++|++|++++|.+. ..| .
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~  324 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-T  324 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-C
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-c
Confidence                                              3345677778888887777777777788888888888874 444 2


Q ss_pred             HHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH--HHHHhcCCCccEEEccCCccccccCCCccch
Q 006752          321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGMYPSGQMNV  398 (632)
Q Consensus       321 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~  398 (632)
                      + .+ ++|++|++++|+..+..  . .+.+++|++|++++|.+++..  +..+..+++|++|++++|.+.+. |..+.. 
T Consensus       325 ~-~l-~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~-  397 (606)
T 3vq2_A          325 L-DL-PFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMG-  397 (606)
T ss_dssp             C-CC-SSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTT-
T ss_pred             C-CC-CccceeeccCCcCccch--h-hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccC-
Confidence            3 44 78888888888554433  2 256788888888888877653  66778888888888888887764 443322 


Q ss_pred             hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccccccCccc
Q 006752          399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLFPLSTFKE  475 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  475 (632)
                                                  ...++.+++++|.+...   ..+.++++|++|++++|.+++..|..+..+++
T Consensus       398 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  449 (606)
T 3vq2_A          398 ----------------------------LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS  449 (606)
T ss_dssp             ----------------------------CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             ----------------------------CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence                                        13445555555555322   24556666666666666666656666666666


Q ss_pred             ccccccccccCCC-cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          476 LIHLSLRNASLTD-VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       476 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      |++|++++|++++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            6666666666665 3455566666666666666666666666666666666666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-43  Score=393.49  Aligned_cols=461  Identities=16%  Similarity=0.177  Sum_probs=363.8

Q ss_pred             HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (632)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~  104 (632)
                      ..++|++..++.+|..+|.                      ++++|||++| .++...+..|+++++|++|+|++|+ ++
T Consensus        34 ~~~~c~~~~l~~vP~~lp~----------------------~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~   89 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLPF----------------------STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQ   89 (635)
T ss_dssp             TEEECTTSCCSSCCSSSCT----------------------TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred             CEEECCCCCcCccCCCCCc----------------------CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CC
Confidence            3567889999999987654                      7999999999 4666666789999999999999998 98


Q ss_pred             chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-HHHh
Q 006752          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRS  183 (632)
Q Consensus       105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~  183 (632)
                      ...+.+|.++++|++|+|++| .++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.+... .|..
T Consensus        90 ~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  168 (635)
T 4g8a_A           90 TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  168 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence            888889999999999999999 78888888899999999999999999987777899999999999999998763 5677


Q ss_pred             ccCCCCccEEEecCCCCCchhhHhhcCCCCC----cEEEccCCCCCCCC-----------------------------C-
Q 006752          184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP-----------------------------N-  229 (632)
Q Consensus       184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~l~-----------------------------~-  229 (632)
                      ++.+++|++|++++|++++..+..+..+.++    ..++++.|.+..++                             . 
T Consensus       169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l  248 (635)
T 4g8a_A          169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL  248 (635)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred             hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence            8899999999999999988777666544332    34555555443211                             0 


Q ss_pred             --------------------------------------------------------CCCCCEEECCCCcccchhccccCC
Q 006752          230 --------------------------------------------------------ISSLECLNLSNCTIDSILEGNENK  253 (632)
Q Consensus       230 --------------------------------------------------------l~~L~~L~L~~~~l~~~~~~~~~~  253 (632)
                                                                              ..+++.+.+.++.+..++ .+...
T Consensus       249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~  327 (635)
T 4g8a_A          249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYN  327 (635)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSC
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccc
Confidence                                                                    112233333333333222 23355


Q ss_pred             CCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCc--hHHHHHHhcCCCCcEE
Q 006752          254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNL  331 (632)
Q Consensus       254 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L  331 (632)
                      ..++.|++.+|.+..++..    .+..|+.+++..+..........+++|+.++++.|.+..  ..+...... .+|+.+
T Consensus       328 ~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L  402 (635)
T 4g8a_A          328 FGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYL  402 (635)
T ss_dssp             CCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEE
T ss_pred             hhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh-hhhhhh
Confidence            6788999999887765432    568899999999988777666788999999999998764  334455555 789999


Q ss_pred             EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH-HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhh
Q 006752          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYN  410 (632)
Q Consensus       332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  410 (632)
                      ++..+........ + ..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+..             
T Consensus       403 ~~~~~~~~~~~~~-~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------  467 (635)
T 4g8a_A          403 DLSFNGVITMSSN-F-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------  467 (635)
T ss_dssp             ECCSCSEEEECSC-C-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------
T ss_pred             hcccccccccccc-c-cccccccchhhhhcccccccccccccccccccccccccccccccccccccc-------------
Confidence            9999876654332 2 46889999999887654433 345678889999999999988876654322             


Q ss_pred             ceeccccccccccccccchhhhccccccccc---chHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          411 LFLHAYGYVIFPSSVLAGFIQQVGAETDLVL---SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                                      ...++.+++++|.+.   ....|..+++|++|+|++|++++..|..|.++++|++|+|++|+|+
T Consensus       468 ----------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~  531 (635)
T 4g8a_A          468 ----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  531 (635)
T ss_dssp             ----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ----------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence                            134556666666432   1146888999999999999999999999999999999999999999


Q ss_pred             CcchhhhccCCCCcEEeecCceeccCCCCCCCCC-CCcceEecCCCcccChHHHHHHHHHc
Q 006752          488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      +..|..|..+++|++|++++|++++..|..|..+ ++|++|++++|++.|+|...+|.+|.
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            9999999999999999999999999999999987 68999999999999999888887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.5e-43  Score=380.37  Aligned_cols=419  Identities=18%  Similarity=0.182  Sum_probs=290.1

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccE
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK  144 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~  144 (632)
                      +++++|++++|. +.+..+..|+++++|++|++++|. ++...+.+|+++++|++|++++| .++.... .  .+++|++
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISC-H--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEEC-C--CCCCCSE
T ss_pred             ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCc-c--ccCCccE
Confidence            479999999994 666666789999999999999998 88888889999999999999999 6764322 2  7899999


Q ss_pred             EEccCCCCCH-hHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCc--cEEEecCCCC--CchhhHhhcCCC-CCcEEE
Q 006752          145 LWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLN  218 (632)
Q Consensus       145 L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~  218 (632)
                      |++++|.+++ ..|..|..+++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..+. +...++
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            9999999987 356789999999999999999987   356677777  9999999998  677777666654 233455


Q ss_pred             ccCCCCCC------CCCCCCCCEEECCCCc-------ccchhccccCCCCCcEEEeeCCCCCchhhh--hhhhcCCCccE
Q 006752          219 LAWTGVTK------LPNISSLECLNLSNCT-------IDSILEGNENKAPLAKISLAGTTFINEREA--FLYIETSLLSF  283 (632)
Q Consensus       219 l~~n~l~~------l~~l~~L~~L~L~~~~-------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~  283 (632)
                      +++|.+.+      +..+++|+.|++++|.       +.+..+.+..+++|+.|++++|.+.+....  ......++|++
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence            56665442      3356677777777765       443333556666777777766665542111  11112346666


Q ss_pred             EeccCCCCCch--hhh-----hcCCCCCeeeccCCCCCchHHHHHHh------------------------cCCCCcEEE
Q 006752          284 LDVSNSSLSRF--CFL-----TQMKALEHLDLSSSMIGDDSVEMVAC------------------------VGANLRNLN  332 (632)
Q Consensus       284 L~ls~n~l~~~--~~l-----~~~~~L~~L~l~~n~l~~~~~~~~~~------------------------~~~~L~~L~  332 (632)
                      |++++|.+++.  ..+     ..+++|+.+++++|.+ ......+..                        .+++|++|+
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  330 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence            66666665532  222     4555555555555555 111011111                        114555555


Q ss_pred             ccCCcCcchhHHHHHhcCCCCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhh
Q 006752          333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYN  410 (632)
Q Consensus       333 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  410 (632)
                      +++|++++..+..+ +.+++|++|++++|++++  ..|..++.+++|++|++++|.+++.+|..                
T Consensus       331 Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----------------  393 (520)
T 2z7x_B          331 FSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG----------------  393 (520)
T ss_dssp             CCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----------------
T ss_pred             eECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc----------------
Confidence            55555554444333 345555555555555554  33344555555555555555555433331                


Q ss_pred             ceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcc
Q 006752          411 LFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS  490 (632)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  490 (632)
                                                        .+..+++|++|++++|.+++..|..+.  ++|++|++++|+++. +
T Consensus       394 ----------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-i  436 (520)
T 2z7x_B          394 ----------------------------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-I  436 (520)
T ss_dssp             ----------------------------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-C
T ss_pred             ----------------------------------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-c
Confidence                                              367789999999999999988877664  799999999999996 6


Q ss_pred             hhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHH-HHHc
Q 006752          491 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF-CKMH  547 (632)
Q Consensus       491 ~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~-~~~~  547 (632)
                      |..+..+++|++|++++|++++..+..|..+++|++|++++|++.|+|...++ ..+.
T Consensus       437 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~  494 (520)
T 2z7x_B          437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  494 (520)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred             chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence            67777999999999999999976445588999999999999999999988777 4443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.2e-43  Score=386.99  Aligned_cols=411  Identities=13%  Similarity=0.170  Sum_probs=316.8

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCC------CC--------------------------chhHHhhh
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR------VT--------------------------SSALWALT  112 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------i~--------------------------~~~~~~l~  112 (632)
                      .+++.|+|+++ .+.+.++..++++++|++|+|++|..      +.                          ...+..+.
T Consensus        81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            47999999999 46777888999999999999999852      01                          00000000


Q ss_pred             -------------------CCCCcCEEeccC-CCCCChhhHhhhcCCCCccEEEccCCCCCHh-----------------
Q 006752          113 -------------------GMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTAD-----------------  155 (632)
Q Consensus       113 -------------------~l~~L~~L~L~~-~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-----------------  155 (632)
                                         ....++.+.+.. +..+++ .+..++++++|++|+|++|.+++.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                               011122222222 114555 566788888888999988888875                 


Q ss_pred             HHHHhc--CCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCC-CCc-hhhHhhcCC------CCCcEEEccCCCCC
Q 006752          156 GIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMF------PRLSFLNLAWTGVT  225 (632)
Q Consensus       156 ~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~  225 (632)
                      +|..+.  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            677777  88889999998888888888888888889999998887 887 788777765      88899999888887


Q ss_pred             CCC------CCCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCC-ccEEeccCCCCCch-hh
Q 006752          226 KLP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRF-CF  296 (632)
Q Consensus       226 ~l~------~l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~-~~  296 (632)
                      .++      .+++|++|++++|.+. .+| .+..+++|++|++++|.+..+|..  +..+++ |++|++++|.++.+ ..
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N~l~~lp~~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHNKLKYIPNI  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSSCCSSCCSC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCCcCcccchh
Confidence            655      4678889999998888 777 777888899999999888866654  457788 99999999988866 33


Q ss_pred             hhcC--CCCCeeeccCCCCCchHHHHHH-------hcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752          297 LTQM--KALEHLDLSSSMIGDDSVEMVA-------CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  367 (632)
Q Consensus       297 l~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  367 (632)
                      +...  ++|++|++++|.+++..|..+.       .. ++|++|++++|+++..... ++..+++|++|++++|+++...
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~~i~  473 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIP  473 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCSBCC
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCCCcC
Confidence            3433  4799999999999887776665       33 6899999999999855444 3466899999999999998443


Q ss_pred             HHHHhcCC-------CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccc
Q 006752          368 ISYMSMMP-------SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV  440 (632)
Q Consensus       368 ~~~l~~~~-------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  440 (632)
                      +..+....       +|++|++++|+++. +|..+                                             
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~---------------------------------------------  507 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF---------------------------------------------  507 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGG---------------------------------------------
T ss_pred             HHHhccccccccccCCccEEECcCCcCCc-cChhh---------------------------------------------
Confidence            33333332       89999999999984 56521                                             


Q ss_pred             cchHHhhcCCcccccccCccCCCCCccccccCccccccccc------ccccCCCcchhhhccCCCCcEEeecCceeccCC
Q 006752          441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL------RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  514 (632)
Q Consensus       441 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  514 (632)
                          ....+++|++|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ +.+
T Consensus       508 ----~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i  581 (636)
T 4eco_A          508 ----RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV  581 (636)
T ss_dssp             ----STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             ----hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence                01378899999999999999 8888999999999999      56888999999999999999999999999 456


Q ss_pred             CCCCCCCCCcceEecCCCcccC
Q 006752          515 LGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       515 ~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      |..+.  ++|+.|++++|++.+
T Consensus       582 p~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          582 NEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSCCC--TTCCEEECCSCTTCE
T ss_pred             CHhHh--CcCCEEECcCCCCcc
Confidence            77665  799999999998744

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-43  Score=398.88  Aligned_cols=487  Identities=17%  Similarity=0.129  Sum_probs=374.2

Q ss_pred             cEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEc
Q 006752           68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL  147 (632)
Q Consensus        68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L  147 (632)
                      +..|.++++ ++. +|.   -.++|++|+|++|. ++...+..|.++++|++|++++|.......+..|.++++|++|+|
T Consensus         7 ~~~dcs~~~-L~~-vP~---lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            7 RIAFYRFCN-LTQ-VPQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEEESCCC-SSC-CCS---SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             eEEEccCCC-CCC-CCC---CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            356666664 222 122   45799999999998 888888899999999999999995555555788999999999999


Q ss_pred             cCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHh--ccCCCCccEEEecCCCCCchhh-HhhcCCCCCcEEEccCCCC
Q 006752          148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS--LQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGV  224 (632)
Q Consensus       148 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l  224 (632)
                      ++|.+.+..|..|.++++|++|++++|.+.+..+..  ++++++|++|++++|.+++..+ ..++++++|++|++++|.+
T Consensus        81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            999999988999999999999999999998865554  8999999999999999987655 5799999999999999998


Q ss_pred             CCCC-----CC--CCCCEEECCCCcccc-hhccccCCCC------CcEEEeeCCCCCchhhhh-----------------
Q 006752          225 TKLP-----NI--SSLECLNLSNCTIDS-ILEGNENKAP------LAKISLAGTTFINEREAF-----------------  273 (632)
Q Consensus       225 ~~l~-----~l--~~L~~L~L~~~~l~~-~~~~~~~~~~------L~~L~l~~n~~~~~~~~~-----------------  273 (632)
                      +.+.     .+  ++|+.|++++|.+.. .+..+..+++      |++|++++|.+.+.....                 
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            7643     33  899999999999884 5555555544      999999999765422110                 


Q ss_pred             ------------------hhh--cCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752          274 ------------------LYI--ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  331 (632)
Q Consensus       274 ------------------~~~--~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  331 (632)
                                        .+.  ..++|+.|++++|.+...  ..+..+++|+.|++++|.+++..+..+..+ ++|++|
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L  319 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVL  319 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEE
Confidence                              011  136789999999988876  567888999999999999988777777776 899999


Q ss_pred             EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhc
Q 006752          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL  411 (632)
Q Consensus       332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~  411 (632)
                      ++++|++++..+..+ +.+++|++|++++|++++..+..|..+++|++|++++|.+++....            .....+
T Consensus       320 ~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~------------~~L~~L  386 (844)
T 3j0a_A          320 NLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI------------PSIPDI  386 (844)
T ss_dssp             EEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSC------------CSCSEE
T ss_pred             ECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCC------------CCcchh
Confidence            999999887766555 6788999999999998887777788899999999999998864221            112223


Q ss_pred             eeccccccccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccc-cccCcccccccccccccCC
Q 006752          412 FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~  487 (632)
                      .........+|..  ...+..+++++|.+..+   ..+.++++|++|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus       387 ~l~~N~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          387 FLSGNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             EEESCCCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred             ccCCCCccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence            3333333344433  34566778888877543   3466889999999999999875443 3556788999999999887


Q ss_pred             -----CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCC
Q 006752          488 -----DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPS  562 (632)
Q Consensus       488 -----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (632)
                           +..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..          .+...+. ......++
T Consensus       465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------l~~~~~~-~~L~~L~L  533 (844)
T 3j0a_A          465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV----------LSHNDLP-ANLEILDI  533 (844)
T ss_dssp             SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS----------CCCCCCC-SCCCEEEE
T ss_pred             cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc----------cChhhhh-ccccEEEC
Confidence                 3445668888999999999999999888888889999999999998733          1111111 33466778


Q ss_pred             CCCCCCCCCCCcchhhhhh---hcccCC
Q 006752          563 DQIGSNGPSPSRTSLRASL---VKQKQD  587 (632)
Q Consensus       563 ~~n~~~g~ip~~~~~~~~~---~n~~~~  587 (632)
                      ++|+++|.+|..+..+..+   .|.+..
T Consensus       534 s~N~l~~~~~~~~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          534 SRNQLLAPNPDVFVSLSVLDITHNKFIC  561 (844)
T ss_dssp             EEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred             CCCcCCCCChhHhCCcCEEEecCCCccc
Confidence            8888998888887665544   455554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.7e-43  Score=390.88  Aligned_cols=408  Identities=15%  Similarity=0.164  Sum_probs=306.0

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEc-CCCCCCCchhH-----------------------------------
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV-ADCRRVTSSAL-----------------------------------  108 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~i~~~~~-----------------------------------  108 (632)
                      .+++.|+|+++ .+.+.++..++++++|++|+| ++|. +.+..+                                   
T Consensus       323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            46999999999 477778889999999999999 6654 322200                                   


Q ss_pred             -----Hhhh-----------CCCCcCEEeccC--CCCCChhhHhhhcCCCCccEEEccCCCCCH----------------
Q 006752          109 -----WALT-----------GMTCLKELDLSR--CVKVTDAGMKHLLSISTLEKLWLSETGLTA----------------  154 (632)
Q Consensus       109 -----~~l~-----------~l~~L~~L~L~~--~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~----------------  154 (632)
                           ..+.           ....++.+.+..  | .+++ .+..++++++|++|+|++|.+++                
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~  478 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK  478 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence                 0000           111222222222  2 3444 45678888888888888888887                


Q ss_pred             -hHHHHhc--CCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCC-CCc-hhhHhhcCCC-------CCcEEEccCC
Q 006752          155 -DGIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMFP-------RLSFLNLAWT  222 (632)
Q Consensus       155 -~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n  222 (632)
                       .+|..+.  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..++       +|++|++++|
T Consensus       479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence             3666666  88888888888888888888888888888888888887 887 7777666554       8888888888


Q ss_pred             CCCCCC------CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCC-ccEEeccCCCCCch-
Q 006752          223 GVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRF-  294 (632)
Q Consensus       223 ~l~~l~------~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~-  294 (632)
                      .++.+|      ++++|++|++++|.+..+| .+..+++|+.|++++|.+..+|..  +..+++ |+.|++++|.++.+ 
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCC
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCc
Confidence            877655      4688888999888888777 777888899999999888866654  456777 89999999888866 


Q ss_pred             hhhhcC--CCCCeeeccCCCCCchHHHHH---Hh-cCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752          295 CFLTQM--KALEHLDLSSSMIGDDSVEMV---AC-VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  368 (632)
Q Consensus       295 ~~l~~~--~~L~~L~l~~n~l~~~~~~~~---~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (632)
                      ..+...  ++|+.|++++|.+.+.+|...   .. .+++|++|++++|+++.. +..++..+++|+.|++++|+++....
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCCccCh
Confidence            333333  348899999998876544221   11 114799999999999854 44444678999999999999884333


Q ss_pred             HHHhc-------CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccccc
Q 006752          369 SYMSM-------MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVL  441 (632)
Q Consensus       369 ~~l~~-------~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  441 (632)
                      ..+..       +++|+.|+|++|+++. +|..+.                                             
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~---------------------------------------------  748 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR---------------------------------------------  748 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGS---------------------------------------------
T ss_pred             HHhccccccccccCCccEEECCCCCCcc-chHHhh---------------------------------------------
Confidence            33322       2389999999999984 455210                                             


Q ss_pred             chHHhhcCCcccccccCccCCCCCccccccCccccccccccc------ccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752          442 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN------ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  515 (632)
Q Consensus       442 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  515 (632)
                          ...+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|
T Consensus       749 ----~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          749 ----ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             ----TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             ----hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence                1367899999999999998 688888999999999976      788888999999999999999999999 5567


Q ss_pred             CCCCCCCCcceEecCCCcc
Q 006752          516 GSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       516 ~~l~~~~~L~~L~l~~N~l  534 (632)
                      ..+.  ++|+.||+++|++
T Consensus       823 ~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          823 EKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             SCCC--SSSCEEECCSCTT
T ss_pred             Hhhc--CCCCEEECCCCCC
Confidence            7665  6999999999987

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-43  Score=382.83  Aligned_cols=405  Identities=18%  Similarity=0.202  Sum_probs=316.7

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL  169 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  169 (632)
                      +++++|++++|. ++...+.+|.++++|++|++++| .++...+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus        28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCc-cCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            579999999998 88888889999999999999999 7888778889999999999999999998878899999999999


Q ss_pred             EcCCCCCChHHHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCC----CEEECC
Q 006752          170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSL----ECLNLS  239 (632)
Q Consensus       170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L----~~L~L~  239 (632)
                      ++++|.+.+..+..++++++|++|++++|.+++ ..|..++++++|++|++++|.++.++     .+++|    ++|+++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            999999988665578999999999999999987 46889999999999999999988643     44566    899999


Q ss_pred             CCcccchhccccCCCCCcEEEeeCCCCCch--h-----------------------------------------------
Q 006752          240 NCTIDSILEGNENKAPLAKISLAGTTFINE--R-----------------------------------------------  270 (632)
Q Consensus       240 ~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~--~-----------------------------------------------  270 (632)
                      +|.+..+++..+...+|++|++++|.....  +                                               
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            999998887777666899999988732210  0                                               


Q ss_pred             --------hhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752          271 --------EAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA  341 (632)
Q Consensus       271 --------~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  341 (632)
                              ....+..+++|++|++++|.+..+ ..+..+ +|++|++++|.+.... .  .. +++|++|++++|.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~-~--~~-l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP-T--LK-LKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC-B--CB-CSSCCEEEEESCBSCCB
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccC-c--cc-ccccCEEeCcCCccccc
Confidence                    001234567888888888888776 445556 8888888888887432 2  22 37889999998887765


Q ss_pred             hHHHHHhcCCCCcEEEccCCCCChHH--HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccc
Q 006752          342 GVGILAGHLPNLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYV  419 (632)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (632)
                      .+.   ..+++|++|++++|++++..  +..+..+++|++|++++|.+.+..+. +..                      
T Consensus       341 ~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~----------------------  394 (570)
T 2z63_A          341 FSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG----------------------  394 (570)
T ss_dssp             CCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET----------------------
T ss_pred             ccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc----------------------
Confidence            443   56889999999999887654  56788889999999999988775332 211                      


Q ss_pred             ccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC-Ccchhhhc
Q 006752          420 IFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLS  495 (632)
Q Consensus       420 ~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~  495 (632)
                             ...++.+++++|.+...   ..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ +.+|..+.
T Consensus       395 -------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  467 (570)
T 2z63_A          395 -------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  467 (570)
T ss_dssp             -------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             -------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence                   13455666666665332   24667777777777777777777777777777777777777776 45667777


Q ss_pred             cCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          496 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       496 ~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      .+++|++|++++|++++..|..|..+++|++|++++|++
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            777777777777777777777777777777777777776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.9e-42  Score=372.43  Aligned_cols=463  Identities=15%  Similarity=0.132  Sum_probs=328.1

Q ss_pred             cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      |+...+.|.+++. ++. ++..  -.++|++|++++|. ++...+.+|.++++|++|++++| .++...+..|.++++|+
T Consensus         4 C~~~~~c~~~~~~-l~~-ip~~--~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            4 CDASGVCDGRSRS-FTS-IPSG--LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             ECTTSEEECTTSC-CSS-CCSC--CCTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred             CCCCceEECCCCc-ccc-cccc--CCCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCC
Confidence            3445556777764 321 1221  23789999999998 88888888999999999999999 78888788899999999


Q ss_pred             EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-HHHhccCCCCccEEEecCCC-CCchhhHhhcCCCCCcEEEccC
Q 006752          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQ-VSNRGAAVLKMFPRLSFLNLAW  221 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~  221 (632)
                      +|++++|.+++..+..|..+++|++|++++|.+.+. .+..++++++|++|++++|. +....+..+..+++|++|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            999999999998888899999999999999999863 45678999999999999998 4544456899999999999999


Q ss_pred             CCCCC-----CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchh--hhhhhhcCCCccEEeccCCCCCc
Q 006752          222 TGVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDVSNSSLSR  293 (632)
Q Consensus       222 n~l~~-----l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~  293 (632)
                      |.+++     +..+++|++|++++|.+..++..+. .+++|++|++++|.+.+.+  +......+++|+.|++++|.+++
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred             CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence            98875     5578899999999999988777654 6899999999999998753  11123457899999999998876


Q ss_pred             h------hhhhcCCCCCeeeccCCCCCchH------HHHHHhcCCCCcEEEccCCcCcchhH----HHHHhcCCCCcEEE
Q 006752          294 F------CFLTQMKALEHLDLSSSMIGDDS------VEMVACVGANLRNLNLSNTRFSSAGV----GILAGHLPNLEILS  357 (632)
Q Consensus       294 ~------~~l~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~  357 (632)
                      .      ..+..+++|+.+++++|.+.+..      ...+... ++++.|++.++.+.....    ..+....++|++|+
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh-cccccccccccccchhhhcccchhhhhhcccceEEE
Confidence            4      33456788888888887654321      0001111 445555555444332110    00112234455555


Q ss_pred             ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCC---ccchhhhhhhhhhhhhceeccccccccccccccchhhhcc
Q 006752          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG---QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVG  434 (632)
Q Consensus       358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  434 (632)
                      +++|.++......+..+++|++|++++|++++.+|..   +.                             ....++.|+
T Consensus       317 l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-----------------------------~l~~L~~L~  367 (549)
T 2z81_A          317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG-----------------------------AWPSLQTLV  367 (549)
T ss_dssp             EESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT-----------------------------SSTTCCEEE
T ss_pred             eccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh-----------------------------ccccCcEEE
Confidence            5555544322222234555555555555554433210   00                             012344444


Q ss_pred             cccccccch----HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCcee
Q 006752          435 AETDLVLSL----TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  510 (632)
Q Consensus       435 ~~~~~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l  510 (632)
                      +++|.+..+    ..+..+++|++|++++|++++ +|..+..+++|++|++++|++++.. ..+  .++|++|++++|++
T Consensus       368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l  443 (549)
T 2z81_A          368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNL  443 (549)
T ss_dssp             CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCC
T ss_pred             ccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCCh
Confidence            444444332    247889999999999999996 7888888999999999999998743 332  26899999999999


Q ss_pred             ccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhh
Q 006752          511 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL  581 (632)
Q Consensus       511 ~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~  581 (632)
                      ++..    ..+++|++|++++|++..-+.   . ...       ......++++|++++.+|..++.+..+
T Consensus       444 ~~~~----~~l~~L~~L~Ls~N~l~~ip~---~-~~l-------~~L~~L~Ls~N~l~~~~~~~~~~l~~L  499 (549)
T 2z81_A          444 DSFS----LFLPRLQELYISRNKLKTLPD---A-SLF-------PVLLVMKISRNQLKSVPDGIFDRLTSL  499 (549)
T ss_dssp             SCCC----CCCTTCCEEECCSSCCSSCCC---G-GGC-------TTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred             hhhc----ccCChhcEEECCCCccCcCCC---c-ccC-------ccCCEEecCCCccCCcCHHHHhcCccc
Confidence            9853    467899999999999843111   1 112       234667889999999888877766543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-40  Score=373.59  Aligned_cols=424  Identities=13%  Similarity=0.119  Sum_probs=337.4

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEec-cCCCCCChhhH-----------------------------------
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDL-SRCVKVTDAGM-----------------------------------  133 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L-~~~~~l~~~~~-----------------------------------  133 (632)
                      .+++.|+|+++. +.+..+.+|+++++|++|+| ++| .+.+..+                                   
T Consensus       323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccCC-CCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            579999999998 88888899999999999999 665 3322200                                   


Q ss_pred             -----hhh-----------cCCCCccEEEccC--CCCCHhHHHHhcCCCCCCEEEcCCCCCCh-----------------
Q 006752          134 -----KHL-----------LSISTLEKLWLSE--TGLTADGIALLSSLQNLSVLDLGGLPVTD-----------------  178 (632)
Q Consensus       134 -----~~l-----------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------  178 (632)
                           ..+           .....++.+.+..  |.+++ +|..|.++++|++|+|++|.+++                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                 000           0112233333433  66776 67889999999999999999999                 


Q ss_pred             HHHHhcc--CCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC-CCC--C-----------CCCCCCCEEECCCCc
Q 006752          179 LVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--L-----------PNISSLECLNLSNCT  242 (632)
Q Consensus       179 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l-----------~~l~~L~~L~L~~~~  242 (632)
                      .+|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++  +           ..+++|++|++++|.
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            4788877  99999999999999999999999999999999999998 764  2           245699999999999


Q ss_pred             ccchhc--cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCC-CCeeeccCCCCCchHH
Q 006752          243 IDSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSV  318 (632)
Q Consensus       243 l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~-L~~L~l~~n~l~~~~~  318 (632)
                      +..+|.  .+..+++|++|++++|.+..+|   .+..+++|+.|++++|.+..+ ..+..+++ |++|++++|.++ .+|
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence            999998  8999999999999999999766   567899999999999999977 56888998 999999999998 455


Q ss_pred             HHHHhcC-CCCcEEEccCCcCcchhHHHH--Hh--cCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCC
Q 006752          319 EMVACVG-ANLRNLNLSNTRFSSAGVGIL--AG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS  393 (632)
Q Consensus       319 ~~~~~~~-~~L~~L~l~~n~l~~~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~  393 (632)
                      ..+.... ++|+.|++++|++.+..+...  .+  .+++|+.|++++|+++......+..+++|+.|+|++|+++. +|.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cCh
Confidence            4443331 349999999999987544211  01  34589999999999996666666789999999999999994 565


Q ss_pred             CccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc--
Q 006752          394 GQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS--  471 (632)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--  471 (632)
                      .+....                                           .+.+.++++|++|+|++|+++. +|..+.  
T Consensus       715 ~~~~~~-------------------------------------------~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~  750 (876)
T 4ecn_A          715 NSLKPK-------------------------------------------DGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT  750 (876)
T ss_dssp             TSSSCT-------------------------------------------TSCCTTGGGCCEEECCSSCCCC-CCGGGSTT
T ss_pred             HHhccc-------------------------------------------cccccccCCccEEECCCCCCcc-chHHhhhc
Confidence            432100                                           0013456699999999999995 788886  


Q ss_pred             CcccccccccccccCCCcchhhhccCCCCcEEeecC------ceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHH
Q 006752          472 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD------AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK  545 (632)
Q Consensus       472 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~------N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~  545 (632)
                      .+++|+.|+|++|++++ +|..+..+++|+.|++++      |++.+.+|..+..+++|+.|++++|++..  .      
T Consensus       751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~--I------  821 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK--V------  821 (876)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB--C------
T ss_pred             cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc--c------
Confidence            89999999999999999 688899999999999976      88999999999999999999999999822  2      


Q ss_pred             HcCCeeeeeccccccCCCCCCCCCCCCCcchhh
Q 006752          546 MHPRIEVWHELSVICPSDQIGSNGPSPSRTSLR  578 (632)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~  578 (632)
                        |.- +. .....+++++|.+...-+..+...
T Consensus       822 --p~~-l~-~~L~~LdLs~N~l~~i~~~~~~~~  850 (876)
T 4ecn_A          822 --DEK-LT-PQLYILDIADNPNISIDVTSVCPY  850 (876)
T ss_dssp             --CSC-CC-SSSCEEECCSCTTCEEECGGGHHH
T ss_pred             --CHh-hc-CCCCEEECCCCCCCccChHHcccc
Confidence              211 11 245677888998876555554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.8e-41  Score=365.43  Aligned_cols=414  Identities=16%  Similarity=0.160  Sum_probs=258.3

Q ss_pred             cccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEE
Q 006752           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL  145 (632)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L  145 (632)
                      ++++|++++|. +....+..|+++++|++|++++|. ++...+.+|.++++|++|++++| .++.... .  .+++|++|
T Consensus        53 ~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~--~l~~L~~L  126 (562)
T 3a79_B           53 RTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN-RLQNISC-C--PMASLRHL  126 (562)
T ss_dssp             TCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-CCCEECS-C--CCTTCSEE
T ss_pred             CcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-cCCccCc-c--ccccCCEE
Confidence            57777777773 444444566777777777777776 66666666777777777777777 4553222 2  67777777


Q ss_pred             EccCCCCCHhH-HHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCc--cEEEecCCCC--CchhhHhhcCCC-CCcEEEc
Q 006752          146 WLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNL  219 (632)
Q Consensus       146 ~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l  219 (632)
                      ++++|.+++.. |..|.++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+..+. ..-.+++
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            77777776532 35677777777777777777653   33344444  7777777776  555555555443 1113344


Q ss_pred             cCCCCCC------CCCCCCCCEEECCCCc-----ccchhccccCCCCCcEEEeeCCCCCchh--hhhhhhcCCCccEEec
Q 006752          220 AWTGVTK------LPNISSLECLNLSNCT-----IDSILEGNENKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDV  286 (632)
Q Consensus       220 ~~n~l~~------l~~l~~L~~L~L~~~~-----l~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l  286 (632)
                      ++|.+..      +..+++|+.+++++|.     +......+...++|+.+++.++.+.+..  ........++|++|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence            4444432      2245666777776664     1222333445556666666555544321  1111112346666666


Q ss_pred             cCCCCCch--hhh-----hcC--------------------------CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEc
Q 006752          287 SNSSLSRF--CFL-----TQM--------------------------KALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  333 (632)
Q Consensus       287 s~n~l~~~--~~l-----~~~--------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  333 (632)
                      ++|.+++.  ..+     ..+                          .+|++|++++|.+.....  .... ++|++|++
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~l  360 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP-SSFTFLNF  360 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC-CCCCEEEC
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCC-CCceEEEC
Confidence            66665532  111     222                          334455555544432210  0112 55666666


Q ss_pred             cCCcCcchhHHHHHhcCCCCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhc
Q 006752          334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL  411 (632)
Q Consensus       334 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~  411 (632)
                      ++|++++..+..+ +.+++|++|++++|++++  ..|..+..+++|++|++++|.+++.+|..                 
T Consensus       361 ~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----------------  422 (562)
T 3a79_B          361 TQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----------------  422 (562)
T ss_dssp             CSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----------------
T ss_pred             CCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----------------
Confidence            6666555444433 445566666666666554  33444555666666666666665543432                 


Q ss_pred             eeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch
Q 006752          412 FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL  491 (632)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  491 (632)
                                                       .+..+++|++|++++|.+++..|..+.  ++|++|+|++|+++. +|
T Consensus       423 ---------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip  466 (562)
T 3a79_B          423 ---------------------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IP  466 (562)
T ss_dssp             ---------------------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CC
T ss_pred             ---------------------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cC
Confidence                                             366789999999999999987777654  799999999999997 56


Q ss_pred             hhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHH
Q 006752          492 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK  545 (632)
Q Consensus       492 ~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~  545 (632)
                      ..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|...++.+
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  520 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  520 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred             hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence            666699999999999999997655558999999999999999999998877755

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-40  Score=367.87  Aligned_cols=392  Identities=14%  Similarity=0.141  Sum_probs=322.9

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCC------CC--------------------------hhhHhhhc
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK------VT--------------------------DAGMKHLL  137 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~------l~--------------------------~~~~~~l~  137 (632)
                      .+++.|+|+++. +.+..+.+++++++|++|+|++|..      +.                          ...+..+.
T Consensus        81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            589999999998 8888888999999999999999831      01                          00000000


Q ss_pred             -------------------CCCCccEEEcc--CCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-----------------
Q 006752          138 -------------------SISTLEKLWLS--ETGLTADGIALLSSLQNLSVLDLGGLPVTDL-----------------  179 (632)
Q Consensus       138 -------------------~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------  179 (632)
                                         ....++.+.+.  .|++++ +|..++++++|++|++++|.+++.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                               01122222222  467777 788899999999999999999995                 


Q ss_pred             HHHhcc--CCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC-CCC--CC----C------CCCCCEEECCCCccc
Q 006752          180 VLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LP----N------ISSLECLNLSNCTID  244 (632)
Q Consensus       180 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l~----~------l~~L~~L~L~~~~l~  244 (632)
                      +|..++  ++++|++|++++|.+.+..|..+.++++|++|++++|. +++  +|    .      +++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            888888  99999999999999999999999999999999999998 875  33    3      389999999999999


Q ss_pred             chhc--cccCCCCCcEEEeeCCCCC-chhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCC-CCeeeccCCCCCchHHH
Q 006752          245 SILE--GNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVE  319 (632)
Q Consensus       245 ~~~~--~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~-L~~L~l~~n~l~~~~~~  319 (632)
                      .+|.  .+..+++|++|++++|.+. .+|   .+..+++|++|++++|.++.+ ..+..+++ |++|++++|.++ ..|.
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence            9998  8999999999999999998 555   566889999999999999877 56888999 999999999998 4555


Q ss_pred             HHHhc-CCCCcEEEccCCcCcchhHHHHHh-------cCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccccc
Q 006752          320 MVACV-GANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMY  391 (632)
Q Consensus       320 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~  391 (632)
                      .+... .++|++|++++|++++..+..+ .       .+++|++|++++|++++..+..+..+++|++|++++|+++. +
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i  472 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-I  472 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-C
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhh-cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-c
Confidence            44433 1389999999999998777654 3       56799999999999997666667789999999999999994 5


Q ss_pred             CCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc
Q 006752          392 PSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  471 (632)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  471 (632)
                      |.......                                           ...+.++++|++|+|++|+++. +|..+.
T Consensus       473 ~~~~~~~~-------------------------------------------~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~  508 (636)
T 4eco_A          473 PKNSLKDE-------------------------------------------NENFKNTYLLTSIDLRFNKLTK-LSDDFR  508 (636)
T ss_dssp             CSSSSEET-------------------------------------------TEECTTGGGCCEEECCSSCCCB-CCGGGS
T ss_pred             CHHHhccc-------------------------------------------cccccccCCccEEECcCCcCCc-cChhhh
Confidence            65321100                                           0013345699999999999995 777776


Q ss_pred             --CcccccccccccccCCCcchhhhccCCCCcEEee------cCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          472 --TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI------RDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       472 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l------s~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                        .+++|+.|+|++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|++++|++
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence              89999999999999999 7889999999999999      56889999999999999999999999998

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-40  Score=358.15  Aligned_cols=396  Identities=16%  Similarity=0.130  Sum_probs=258.2

Q ss_pred             cEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEc
Q 006752           68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL  147 (632)
Q Consensus        68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L  147 (632)
                      ++||+++|+ ++ .++..+.  ++|++|++++|. ++...+.+|.++++|++|++++| .+++..+..|+++++|++|++
T Consensus         3 ~~l~ls~n~-l~-~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNG-LI-HVPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSC-CS-SCCCSCC--TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCC-cc-ccccccc--ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEec
Confidence            578999985 43 2333333  799999999998 88888888999999999999999 788877888999999999999


Q ss_pred             cCCCCCHhHHHHhcCCCCCCEEEcCCCCCCh-HHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC--cEEEccCCCC
Q 006752          148 SETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLAWTGV  224 (632)
Q Consensus       148 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l  224 (632)
                      ++|+++. +|..  .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+
T Consensus        77 s~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           77 SHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             CCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            9999985 3333  78999999999999887 356788999999999999999876   346667777  9999988887


Q ss_pred             --CC--CCCCCCCC----EEECCCCcccc-hhc-cccCCCCCcEEEeeCCC-------CCchhhhhhhhcCCCccEEecc
Q 006752          225 --TK--LPNISSLE----CLNLSNCTIDS-ILE-GNENKAPLAKISLAGTT-------FINEREAFLYIETSLLSFLDVS  287 (632)
Q Consensus       225 --~~--l~~l~~L~----~L~L~~~~l~~-~~~-~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~L~ls  287 (632)
                        ..  ...+..++    .+++++|.+.+ ++. .+..+++|+.+++++|.       +.+..+  .+..+++|+.|+++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~  228 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLN  228 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhcccc
Confidence              32  11233332    45666666552 222 33367777777777775       332222  34456666666666


Q ss_pred             CCCCCch-----hhhhcCCCCCeeeccCCCCCchHHHHH-----HhcCCCCcEEEccCCcCcchhHHHHHh--cCCCCcE
Q 006752          288 NSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSVEMV-----ACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEI  355 (632)
Q Consensus       288 ~n~l~~~-----~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~  355 (632)
                      +|.+.+.     ......++|++|++++|.+++..|..+     ..+ +.|+.+++++|.+ ......+..  ..++|+.
T Consensus       229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~  306 (520)
T 2z7x_B          229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL-KALSIHQVVSDVF-GFPQSYIYEIFSNMNIKN  306 (520)
T ss_dssp             EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEEECCC-CSCTHHHHHHHHTCCCSE
T ss_pred             ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC-ceeEeccccccce-ecchhhhhcccccCceeE
Confidence            6665543     111123466666666666655555444     333 5666666666665 111111111  1145666


Q ss_pred             EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA  435 (632)
Q Consensus       356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  435 (632)
                      |++++|.+.+..  .+..+++|++|++++|++++..|.                                          
T Consensus       307 L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------  342 (520)
T 2z7x_B          307 FTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE------------------------------------------  342 (520)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT------------------------------------------
T ss_pred             EEcCCCcccccc--chhhCCcccEEEeECCccChhhhh------------------------------------------
Confidence            666666654322  014566666666666666665454                                          


Q ss_pred             ccccccchHHhhcCCcccccccCccCCCC--CccccccCcccccccccccccCCCcch-hhhccCCCCcEEeecCceecc
Q 006752          436 ETDLVLSLTALQNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       436 ~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~  512 (632)
                               .+.++++|++|++++|++++  ..|..++.+++|++|++++|++++.+| ..+..+++|++|++++|++++
T Consensus       343 ---------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          343 ---------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             ---------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             ---------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence                     24455667777777777665  344556666777777777777766333 346666677777777777766


Q ss_pred             CCCCCCCCCCCcceEecCCCcc
Q 006752          513 SGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       513 ~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      ..|..+.  ++|++|++++|++
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l  433 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKI  433 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCC
T ss_pred             chhhhhc--ccCCEEECCCCcc
Confidence            5555543  5667777777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-38  Score=338.09  Aligned_cols=372  Identities=17%  Similarity=0.131  Sum_probs=266.8

Q ss_pred             cEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhH-HHHhcCCCCCCEEEc
Q 006752           93 RSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG-IALLSSLQNLSVLDL  171 (632)
Q Consensus        93 ~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L  171 (632)
                      +.++.+++. ++..+.    -.++|++|++++| .++...+..|.++++|++|++++|.+.+.+ +..|..+++|++|++
T Consensus        13 ~~~~c~~~~-l~~lp~----l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           13 YNAICINRG-LHQVPE----LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TEEECCSSC-CSSCCC----CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             cccCcCCCC-cccCCC----CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            345555554 443221    1256777777777 566666666777777777777777665333 445667777777777


Q ss_pred             CCCCCChHHHHhccCCCCccEEEecCCCCCchhhHh--hcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcc
Q 006752          172 GGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV--LKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG  249 (632)
Q Consensus       172 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~  249 (632)
                      ++|.+.+..|..|+++++|++|++++|.+++..+..  +..+++|++|++++|.++++.                  |..
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------~~~  148 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ------------------PAS  148 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC------------------CCG
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC------------------ccc
Confidence            777776666666777777777777777776644443  555555555555555444321                  222


Q ss_pred             -ccCCCCCcEEEeeCCCCCchhhh-hhhhcCCCccEEeccCCCCCchh----------hhhcCCCCCeeeccCCCCCchH
Q 006752          250 -NENKAPLAKISLAGTTFINEREA-FLYIETSLLSFLDVSNSSLSRFC----------FLTQMKALEHLDLSSSMIGDDS  317 (632)
Q Consensus       250 -~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~----------~l~~~~~L~~L~l~~n~l~~~~  317 (632)
                       +..+++|++|++++|.+.+.++. +......+|+.|++++|.+....          .+..+++|++|++++|.+++..
T Consensus       149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence             33455555555555555443221 11112245666666666665541          1335578889999999888888


Q ss_pred             HHHHHhcC--CCCcEEEccCCcCcchhH----------HHHH-hcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccC
Q 006752          318 VEMVACVG--ANLRNLNLSNTRFSSAGV----------GILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN  384 (632)
Q Consensus       318 ~~~~~~~~--~~L~~L~l~~n~l~~~~~----------~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~  384 (632)
                      +..+....  ++|+.|++++|...+...          ..+. -.+++|++|++++|.+++..+..++.+++|++|++++
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  308 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ  308 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence            77776542  688889988875443211          1110 1246899999999999998888999999999999999


Q ss_pred             CccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCC
Q 006752          385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD  464 (632)
Q Consensus       385 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~  464 (632)
                      |++++..|.                                                   .+.++++|++|++++|.+++
T Consensus       309 n~l~~~~~~---------------------------------------------------~~~~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          309 NEINKIDDN---------------------------------------------------AFWGLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             SCCCEECTT---------------------------------------------------TTTTCTTCCEEECCSSCCCE
T ss_pred             CcccccChh---------------------------------------------------HhcCcccCCEEECCCCccCC
Confidence            999987666                                                   46778999999999999999


Q ss_pred             CccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHH
Q 006752          465 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA  539 (632)
Q Consensus       465 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~  539 (632)
                      ..+..|..+++|++|+|++|++++..|.+|..+++|++|++++|++++..+..|..+++|++|++++|++.|.+.
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            889999999999999999999999989999999999999999999999888888999999999999999988774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.1e-38  Score=332.50  Aligned_cols=366  Identities=17%  Similarity=0.181  Sum_probs=233.0

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC-chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      +++++|+|++| .+.+..+..|+++++|++|++++|. +. ...+.+|.++++|++|++++| .++...+..|.++++|+
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  106 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLE  106 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCC
T ss_pred             CccCEEEecCC-ccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCC
Confidence            34555555555 2333333445555555555555554 22 223334455555555555555 34444444445555555


Q ss_pred             EEEccCCCCCHhHHHH--hcCCCCCCEEEcCCCCCChHHHHh-ccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEcc
Q 006752          144 KLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  220 (632)
                      +|++++|.+++..+..  |..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+         
T Consensus       107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------  177 (455)
T 3v47_A          107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF---------  177 (455)
T ss_dssp             EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG---------
T ss_pred             EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc---------
Confidence            5555555554433332  444555555555555544443332 4445555555555555444444433332         


Q ss_pred             CCCCCCCCCCCCCCEEECCCCcccchhc---------cccCCCCCcEEEeeCCCCCchhhhhhh--hcCCCccEEeccCC
Q 006752          221 WTGVTKLPNISSLECLNLSNCTIDSILE---------GNENKAPLAKISLAGTTFINEREAFLY--IETSLLSFLDVSNS  289 (632)
Q Consensus       221 ~n~l~~l~~l~~L~~L~L~~~~l~~~~~---------~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~ls~n  289 (632)
                              ...+++.|++++|.+..++.         .++.+++|++|++++|.+.+..+....  ....+|+.|++++|
T Consensus       178 --------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          178 --------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             --------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             --------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence                    11345555555555554332         234567788888888877764433221  22477888888877


Q ss_pred             CCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhc-CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752          290 SLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  367 (632)
Q Consensus       290 ~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  367 (632)
                      ...+. .....++.+.             ...+... .++|++|++++|++++..+..+ +.+++|++|++++|++++..
T Consensus       250 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          250 YNMGSSFGHTNFKDPD-------------NFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTSCCTTCCSSCCCC-------------TTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEEC
T ss_pred             cccccccchhhhccCc-------------ccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCcccccC
Confidence            65443 1111111111             1111111 1689999999999988777665 67899999999999999888


Q ss_pred             HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhh
Q 006752          368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQ  447 (632)
Q Consensus       368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~  447 (632)
                      +..+..+++|++|++++|.+++..|.                                                   .+.
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~  344 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSR---------------------------------------------------MFE  344 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGG---------------------------------------------------GGT
T ss_pred             hhHhcCcccCCEEECCCCccCCcChh---------------------------------------------------Hhc
Confidence            88899999999999999999877555                                                   567


Q ss_pred             cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752          448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  515 (632)
Q Consensus       448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  515 (632)
                      ++++|++|+|++|++++..|.+|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            88999999999999999889999999999999999999999888888999999999999999997644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.8e-36  Score=321.04  Aligned_cols=342  Identities=23%  Similarity=0.315  Sum_probs=224.9

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL  169 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  169 (632)
                      ++|++|+++++. +...  ..+..+++|++|++++| .+++..+  +.++++|++|++++|.+++..+  +..+++|++|
T Consensus        46 ~~l~~L~l~~~~-i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             ccccEEecCCCC-CccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            455555555554 4332  13455566666666665 3444322  5556666666666666555433  5566666666


Q ss_pred             EcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCC---CCCCCCCCCEEECCCCcccch
Q 006752          170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSI  246 (632)
Q Consensus       170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~l~~l~~L~~L~L~~~~l~~~  246 (632)
                      ++++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++|++|++++ .+.   .+..+++|++|++++|.+..+
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCC
Confidence            666666655422  556666666666666655432  355666666666642 222   244566666666766666655


Q ss_pred             hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752          247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA  326 (632)
Q Consensus       247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  326 (632)
                      + .+..+++|++|++++|.+.+.++   +..+++|++|++++|.++..+.+..+++|++|++++|.+.+..+  +..+ +
T Consensus       193 ~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~  265 (466)
T 1o6v_A          193 S-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL-T  265 (466)
T ss_dssp             G-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-T
T ss_pred             h-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC-C
Confidence            3 35567777777777777776554   34577788888888877777777777888888888887776554  4444 7


Q ss_pred             CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhh
Q 006752          327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM  406 (632)
Q Consensus       327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  406 (632)
                      +|++|++++|++++..+   ...+++|++|++++|++++..+  +..+++|+.|++++|++++..|              
T Consensus       266 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------------  326 (466)
T 1o6v_A          266 KLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--------------  326 (466)
T ss_dssp             TCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--------------
T ss_pred             CCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--------------
Confidence            78888888887776554   2567788888888887776544  6777888888888887776522              


Q ss_pred             hhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC
Q 006752          407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  486 (632)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  486 (632)
                                                             +..+++|++|++++|.+++.  ..+..+++|+.|++++|++
T Consensus       327 ---------------------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          327 ---------------------------------------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             ---------------------------------------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ---------------------------------------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence                                                   34567788888888888774  4577788888888888888


Q ss_pred             CCcchhhhccCCCCcEEeecCceeccC
Q 006752          487 TDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       487 ~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      ++..|  +..+++|+.|++++|++++.
T Consensus       366 ~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          366 SDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             Cccch--hhcCCCCCEEeccCCcccCC
Confidence            87665  77788888888888888774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.1e-36  Score=317.87  Aligned_cols=343  Identities=20%  Similarity=0.296  Sum_probs=292.9

Q ss_pred             CCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccE
Q 006752          113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY  192 (632)
Q Consensus       113 ~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  192 (632)
                      .++++++|+++++ .+...  +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  ++.+++|++
T Consensus        44 ~l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCC-CCccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            4568999999998 55543  357789999999999999988654  8999999999999999988654  899999999


Q ss_pred             EEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC---CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch
Q 006752          193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE  269 (632)
Q Consensus       193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~  269 (632)
                      |++++|.+++..+  +..+++|++|++++|.+..   +..+++|++|+++ +.+..++. +..+++|++|++++|.+.++
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCC
Confidence            9999999987654  8899999999999997765   4578999999996 45555544 77899999999999998876


Q ss_pred             hhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhc
Q 006752          270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH  349 (632)
Q Consensus       270 ~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  349 (632)
                      +.   +..+++|++|++++|.+.+...+..+++|++|++++|.+++..  .+..+ ++|++|++++|.+++..+   ...
T Consensus       193 ~~---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---~~~  263 (466)
T 1o6v_A          193 SV---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP---LSG  263 (466)
T ss_dssp             GG---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG---GTT
T ss_pred             hh---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh---hhc
Confidence            53   5578999999999999988877888999999999999988642  34555 899999999999988765   367


Q ss_pred             CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752          350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF  429 (632)
Q Consensus       350 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (632)
                      +++|++|++++|.+++..+  +..+++|+.|++++|++.+..                                      
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--------------------------------------  303 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------------------------------------  303 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------------------------------
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--------------------------------------
Confidence            8999999999999987655  788999999999999988752                                      


Q ss_pred             hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752          430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  509 (632)
Q Consensus       430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~  509 (632)
                                     .+..+++|++|++++|++++..|  +..+++|+.|++++|++++.  ..+..+++|++|++++|+
T Consensus       304 ---------------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          304 ---------------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             ---------------GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ---------------hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence                           25678899999999999999765  78899999999999999996  478999999999999999


Q ss_pred             eccCCCCCCCCCCCcceEecCCCcccC
Q 006752          510 LTNSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       510 l~~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      +++..|  +..+++|+.|++++|++..
T Consensus       365 l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          365 ISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCccch--hhcCCCCCEEeccCCcccC
Confidence            999876  8889999999999999844

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.7e-37  Score=322.83  Aligned_cols=403  Identities=16%  Similarity=0.099  Sum_probs=262.4

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCc-------------CEEeccCCCCCChh
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCL-------------KELDLSRCVKVTDA  131 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L-------------~~L~L~~~~~l~~~  131 (632)
                      +++++|++++|. + +.++..++++++|++|++++|. +.+..+..++++++|             ++|++++| .+++.
T Consensus        11 ~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l   86 (454)
T 1jl5_A           11 TFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL   86 (454)
T ss_dssp             -------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred             ccchhhhcccCc-h-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence            579999999995 4 6788899999999999999988 776677777777764             99999998 56552


Q ss_pred             hHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCC-CCccEEEecCCCCCchhhHhhcC
Q 006752          132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKM  210 (632)
Q Consensus       132 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~  210 (632)
                      ..    -.++|++|++++|.+++ .|.   ..++|++|++++|.+.+.     ... ++|++|++++|++++ .| .++.
T Consensus        87 p~----~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           87 PE----LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             CS----CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             CC----CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCCCCC-Cc-ccCC
Confidence            21    24789999999999987 332   357899999999998763     222 689999999999987 55 5899


Q ss_pred             CCCCcEEEccCCCCCCCCC-CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCC
Q 006752          211 FPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS  289 (632)
Q Consensus       211 l~~L~~L~l~~n~l~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n  289 (632)
                      +++|++|++++|.+++++. .++|++|++++|.++++| .+..+++|++|++++|.+.+++..     .++|++|++++|
T Consensus       152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n  225 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNN  225 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSS
T ss_pred             CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCC
Confidence            9999999999999998774 468999999999999887 578999999999999999876542     368999999999


Q ss_pred             CCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHH
Q 006752          290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  369 (632)
Q Consensus       290 ~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  369 (632)
                      .++.++.+..+++|++|++++|++++.. .    ..++|++|++++|++++..     ..+++|++|++++|++++..  
T Consensus       226 ~l~~lp~~~~l~~L~~L~l~~N~l~~l~-~----~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~l~~l~--  293 (454)
T 1jl5_A          226 ILEELPELQNLPFLTTIYADNNLLKTLP-D----LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLS--  293 (454)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSSCC-S----CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEES--
T ss_pred             cCCcccccCCCCCCCEEECCCCcCCccc-c----cccccCEEECCCCcccccC-----cccCcCCEEECcCCccCccc--
Confidence            9987777888999999999999988632 1    2278999999999888632     23578999999999887621  


Q ss_pred             HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752          370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL  449 (632)
Q Consensus       370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l  449 (632)
                        ...++|++|++++|++++. +..                                                      .
T Consensus       294 --~~~~~L~~L~l~~N~l~~i-~~~------------------------------------------------------~  316 (454)
T 1jl5_A          294 --ELPPNLYYLNASSNEIRSL-CDL------------------------------------------------------P  316 (454)
T ss_dssp             --CCCTTCCEEECCSSCCSEE-CCC------------------------------------------------------C
T ss_pred             --CcCCcCCEEECcCCcCCcc-cCC------------------------------------------------------c
Confidence              1236889999999988763 220                                                      1


Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc--CCCCCCCCCCCcceE
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLL  527 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~~l~~~~~L~~L  527 (632)
                      ++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..+      
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------  382 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------  382 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh------
Confidence            478899999998887 4543   5888999999998887 444   47889999999999888  556555432      


Q ss_pred             ecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCC--CCCCcchhhhhhhcccCCCC
Q 006752          528 DLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG--PSPSRTSLRASLVKQKQDPM  589 (632)
Q Consensus       528 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g--~ip~~~~~~~~~~n~~~~~~  589 (632)
                        +.|.+ .+..+. .   .       ...+..++++|+++|  .+|.+++.+....+.+.+.+
T Consensus       383 --~~n~~-~~~i~~-~---~-------~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~~~~~~  432 (454)
T 1jl5_A          383 --RMNSH-LAEVPE-L---P-------QNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPY  432 (454)
T ss_dssp             --ECCC----------------------------------------------------------
T ss_pred             --hhccc-cccccc-c---c-------CcCCEEECCCCcCCccccchhhHhheeCcCcccCCcc
Confidence              22332 111111 0   0       123445555666665  66666655554444445433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-36  Score=334.01  Aligned_cols=406  Identities=17%  Similarity=0.163  Sum_probs=252.8

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL  169 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  169 (632)
                      +++++|+|++|. |+...+.+|.++++|++|+|++| .++...+.+|.++++|++|+|++|++++..+..|.++++|++|
T Consensus        52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            379999999998 99888889999999999999999 7888888889999999999999999998878889999999999


Q ss_pred             EcCCCCCChHHHHhccCCCCccEEEecCCCCCch-hhHhhcCCCCCcEEEccCCCCCCCC--------CC-CCCCEEECC
Q 006752          170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLP--------NI-SSLECLNLS  239 (632)
Q Consensus       170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~l~--------~l-~~L~~L~L~  239 (632)
                      ++++|.+++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.++++.        ++ .....++++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            9999999987777899999999999999999764 5778899999999999999998643        22 234578999


Q ss_pred             CCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEe----------------------------------
Q 006752          240 NCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD----------------------------------  285 (632)
Q Consensus       240 ~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~----------------------------------  285 (632)
                      .|.+..++...+....++.+++.+|..........+..+..++...                                  
T Consensus       210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            9999888877777777788888877554322222233333333322                                  


Q ss_pred             -----------------------ccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchh
Q 006752          286 -----------------------VSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG  342 (632)
Q Consensus       286 -----------------------ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  342 (632)
                                             +.++.+.....+.....++.|++.+|.+.+....   . ...|+.+++..|......
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---K-LKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---B-CTTCCEEEEESCCSCCBC
T ss_pred             hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---c-chhhhhcccccccCCCCc
Confidence                                   2222222222233333444444444433321110   0 134444444444333221


Q ss_pred             HHHHHhcCCCCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752          343 VGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI  420 (632)
Q Consensus       343 ~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (632)
                      ..   ..+++|+.|++++|.+..  ..+..+..+.+|+.++++.|.+....+. +..                       
T Consensus       366 ~~---~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~-----------------------  418 (635)
T 4g8a_A          366 SE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLG-----------------------  418 (635)
T ss_dssp             CC---CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTT-----------------------
T ss_pred             cc---ccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc-ccc-----------------------
Confidence            11   235556666666555432  2233344555566666655555443221 111                       


Q ss_pred             cccccccchhhhccccccccc---chHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC-CCcchhhhcc
Q 006752          421 FPSSVLAGFIQQVGAETDLVL---SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL-TDVSLHQLSS  496 (632)
Q Consensus       421 ~~~~~~~~~l~~l~~~~~~l~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~  496 (632)
                            ...++.+++..+...   ....+.++++++.+++++|.+.+..+..+..+++|+.|++++|.+ .+..|..|..
T Consensus       419 ------l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~  492 (635)
T 4g8a_A          419 ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  492 (635)
T ss_dssp             ------CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             ------cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh
Confidence                  112223333322221   112344555555555555555555555555555555555555542 2334445555


Q ss_pred             CCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          497 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       497 l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      +++|++|++++|++++..|..|.++++|++|++++|++
T Consensus       493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l  530 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  530 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence            55555555555555555555555555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.1e-35  Score=316.74  Aligned_cols=401  Identities=21%  Similarity=0.240  Sum_probs=262.8

Q ss_pred             CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchh----HHhhhCCCCcCEEeccCCCCCChhhHhhhc-CC
Q 006752           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSA----LWALTGMTCLKELDLSRCVKVTDAGMKHLL-SI  139 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~----~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~l  139 (632)
                      +++++|||+++...+..+...+..+++|++|++++|. +++..    +..+..+++|++|++++| .+++..+..+. .+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence            4688888888854344455557888888888888888 76543    345667788888888888 56665555444 34


Q ss_pred             C----CccEEEccCCCCCH----hHHHHhcCCCCCCEEEcCCCCCChHHHHhcc-----CCCCccEEEecCCCCCchhhH
Q 006752          140 S----TLEKLWLSETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ-----VLTKLEYLDLWGSQVSNRGAA  206 (632)
Q Consensus       140 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~  206 (632)
                      +    +|++|++++|.++.    ..+..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++....
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            4    58888888887774    3466677777777777777777665444432     244566666666666553322


Q ss_pred             hhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhh----hhcCCCcc
Q 006752          207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFL----YIETSLLS  282 (632)
Q Consensus       207 ~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~  282 (632)
                      .+                                      +..+..+++|++|++++|.+.+......    ....++|+
T Consensus       161 ~l--------------------------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          161 PL--------------------------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             HH--------------------------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             HH--------------------------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence            11                                      1112222333333333333322111100    01234666


Q ss_pred             EEeccCCCCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHh----cCCCCcEEEccCCcCcchh----HHHHHh
Q 006752          283 FLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAG----VGILAG  348 (632)
Q Consensus       283 ~L~ls~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~  348 (632)
                      +|++++|.++..      ..+..+++|++|++++|.+++.....+..    .+++|++|++++|.+++..    +..+ .
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~  281 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-R  281 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-H
T ss_pred             EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH-h
Confidence            666666666542      45567788888888888887765544432    2378888999888888754    3333 4


Q ss_pred             cCCCCcEEEccCCCCChHHHHHHhc-----CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccc
Q 006752          349 HLPNLEILSLSGTQIDDYAISYMSM-----MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPS  423 (632)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (632)
                      .+++|++|++++|.+++..+..+..     .++|++|++++|.+++.....+.                           
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------------  334 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS---------------------------  334 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---------------------------
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH---------------------------
Confidence            5888999999999888776666653     26899999999988765222110                           


Q ss_pred             ccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccC-----cccccccccccccCCC----cchhhh
Q 006752          424 SVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-----FKELIHLSLRNASLTD----VSLHQL  494 (632)
Q Consensus       424 ~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~~  494 (632)
                                          ..+..+++|++|++++|.+++..+..+..     .++|++|++++|++++    .+|..+
T Consensus       335 --------------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l  394 (461)
T 1z7x_W          335 --------------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL  394 (461)
T ss_dssp             --------------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             --------------------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence                                25677889999999999888766655543     5789999999999986    678888


Q ss_pred             ccCCCCcEEeecCceeccCCCCCCC-----CCCCcceEecCCCccc--ChHHHHHHHHHcCCeeee
Q 006752          495 SSLSKLTNLSIRDAVLTNSGLGSFK-----PPRSLKLLDLHGGWLL--TEDAILQFCKMHPRIEVW  553 (632)
Q Consensus       495 ~~l~~L~~L~ls~N~l~~~~~~~l~-----~~~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~~  553 (632)
                      ..+++|++|++++|++++.....+.     ...+|+.|++.++.+.  ....+..+.+..|.+++.
T Consensus       395 ~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~  460 (461)
T 1z7x_W          395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  460 (461)
T ss_dssp             HHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence            8899999999999998875322222     1246777777777652  334566677778887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-36  Score=319.46  Aligned_cols=406  Identities=14%  Similarity=0.118  Sum_probs=234.5

Q ss_pred             CCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCE
Q 006752           89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV  168 (632)
Q Consensus        89 ~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  168 (632)
                      .++|++|++++|. + +..|..++++++|++|++++| .+.+..+..++++++|+.+++.+|.           ..++++
T Consensus        10 ~~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHE   75 (454)
T ss_dssp             --------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSE
T ss_pred             cccchhhhcccCc-h-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhh-----------ccCCCE
Confidence            4678888888877 6 456667788888888888877 4555566666677666655555442           145788


Q ss_pred             EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCC-CCCCEEECCCCcccchh
Q 006752          169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI-SSLECLNLSNCTIDSIL  247 (632)
Q Consensus       169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l-~~L~~L~L~~~~l~~~~  247 (632)
                      |++++|.+++. |.   -.++|++|++++|.+++ .|.   ..++|++|++++|.+++++.. ++|++|++++|.++++|
T Consensus        76 L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           76 LELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             EECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC
T ss_pred             EEecCCccccC-CC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc
Confidence            88888888763 22   24688899999888886 343   347889999999988888766 58999999999998887


Q ss_pred             ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCC
Q 006752          248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  327 (632)
Q Consensus       248 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  327 (632)
                       .+..+++|++|++++|.+.+++..     ..+|++|++++|.+++++.+..+++|++|++++|.+++..     ...++
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~-----~~~~~  216 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP-----DLPLS  216 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-----CCCTT
T ss_pred             -ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCC-----CCcCc
Confidence             578899999999999998876543     3589999999999988877888999999999999887522     12268


Q ss_pred             CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI  407 (632)
Q Consensus       328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  407 (632)
                      |++|++++|+++.. +. + +.+++|++|++++|++++.. .   ..++|++|++++|++++. |..             
T Consensus       217 L~~L~l~~n~l~~l-p~-~-~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l-~~~-------------  275 (454)
T 1jl5_A          217 LESIVAGNNILEEL-PE-L-QNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDL-PEL-------------  275 (454)
T ss_dssp             CCEEECCSSCCSSC-CC-C-TTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCC-CCC-------------
T ss_pred             ccEEECcCCcCCcc-cc-c-CCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCccccc-Ccc-------------
Confidence            99999999988843 32 3 67889999999999887632 1   357899999999998873 441             


Q ss_pred             hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                                                               .++|++|++++|.+++. +..   .++|++|++++|+++
T Consensus       276 -----------------------------------------~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          276 -----------------------------------------PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIR  310 (454)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCS
T ss_pred             -----------------------------------------cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCC
Confidence                                                     13555666666655551 111   145556666666555


Q ss_pred             CcchhhhccC-CCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCC
Q 006752          488 DVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG  566 (632)
Q Consensus       488 ~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  566 (632)
                      +..     .+ ++|++|++++|++++ +|..   +++|++|++++|.+..          .|.   .....+..++++|+
T Consensus       311 ~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~----------lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          311 SLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE----------VPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             EEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSC
T ss_pred             ccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc----------ccc---hhhhccEEECCCCC
Confidence            421     12 355666666665555 2332   3455666666665422          111   01223444555566


Q ss_pred             CCC--CCCCcchhhhhhhcccCCCCCCCccchhcccccCHHHHHHhhcccccc--cCCCCCccc
Q 006752          567 SNG--PSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL--ARPDDSSTQ  626 (632)
Q Consensus       567 ~~g--~ip~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~l~g--~ip~~~~~~  626 (632)
                      ++|  .+|..++.+.  .|++.|.+|.   ..      ..++.||+++|+++|  .||.++...
T Consensus       369 l~~l~~ip~~l~~L~--~n~~~~~i~~---~~------~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          369 LREFPDIPESVEDLR--MNSHLAEVPE---LP------QNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             CSSCCCCCTTCCEEE--CCC--------------------------------------------
T ss_pred             CCcCCCChHHHHhhh--hccccccccc---cc------CcCCEEECCCCcCCccccchhhHhhe
Confidence            655  5666655543  2344442221   11      256677777777777  777766443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.3e-37  Score=335.36  Aligned_cols=452  Identities=14%  Similarity=0.082  Sum_probs=306.6

Q ss_pred             cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      |...+++|+++++ ++. ++..+  .++|++|++++|. ++...+.+|.++++|++|++++| .++...+..|.++++|+
T Consensus        30 ~~~~~~l~ls~~~-L~~-ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           30 NELESMVDYSNRN-LTH-VPKDL--PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             ---CCEEECTTSC-CCS-CCTTS--CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred             cCCCcEEEcCCCC-Ccc-CCCCC--CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence            3456899999995 443 33323  3799999999998 88888889999999999999999 78888788899999999


Q ss_pred             EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-HHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC--cEEEcc
Q 006752          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLA  220 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~  220 (632)
                      +|++++|.++. +|..  .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..   +..+++|  ++|+++
T Consensus       104 ~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          104 YLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD  177 (562)
T ss_dssp             EEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred             EEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence            99999999985 3433  799999999999999874 4578999999999999999998643   4445555  999999


Q ss_pred             CCCC--CCCC--CCCCCC----EEECCCCcccc-hhc-cccCCCCCcEEEeeCCCCC--chhh-hhhhhcCCCccEEecc
Q 006752          221 WTGV--TKLP--NISSLE----CLNLSNCTIDS-ILE-GNENKAPLAKISLAGTTFI--NERE-AFLYIETSLLSFLDVS  287 (632)
Q Consensus       221 ~n~l--~~l~--~l~~L~----~L~L~~~~l~~-~~~-~~~~~~~L~~L~l~~n~~~--~~~~-~~~~~~~~~L~~L~ls  287 (632)
                      +|.+  +...  .+..+.    .+++++|.+.. ++. .+..+++|+.+++++|...  ..+. ...+..++.|+.++++
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9988  4321  222222    45677777663 322 3347889999999998531  1111 1235578899999998


Q ss_pred             CCCCCch-----hhhhcCCCCCeeeccCCCCCchHHHHH-----HhcCCCCcEEEccCCcCcchhHHHHHh--cCCCCcE
Q 006752          288 NSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSVEMV-----ACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEI  355 (632)
Q Consensus       288 ~n~l~~~-----~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~  355 (632)
                      ++.+.+.     ......++|++|++++|.+++..|..+     ..+ +.|+.+++..+.+ ......+..  ..++|++
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L-~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL-KSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC-CEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc-hheehhhccccee-ecChhhhhhhhccCcceE
Confidence            8877654     223344699999999998886555443     222 3333444444443 111111111  1245666


Q ss_pred             EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA  435 (632)
Q Consensus       356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  435 (632)
                      |++++|.+....  ....+++|++|++++|.+++..|..+..                             ...++.|++
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------l~~L~~L~L  384 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST-----------------------------LKRLQTLIL  384 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS-----------------------------CSSCCEEEC
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcc-----------------------------cCCCCEEEC
Confidence            666666554321  0145566666666666666654543321                             123445555


Q ss_pred             ccccccch----HHhhcCCcccccccCccCCCCCcc-ccccCcccccccccccccCCCcchhhhccCCCCcEEeecCcee
Q 006752          436 ETDLVLSL----TALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  510 (632)
Q Consensus       436 ~~~~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l  510 (632)
                      ++|.+..+    ..+.++++|++|++++|.+++.+| ..+..+++|++|++++|++++..|..+.  ++|++|++++|++
T Consensus       385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l  462 (562)
T 3a79_B          385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI  462 (562)
T ss_dssp             CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred             CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence            55555432    247788999999999999998444 4577889999999999999887666554  7899999999999


Q ss_pred             ccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCC
Q 006752          511 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP  572 (632)
Q Consensus       511 ~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip  572 (632)
                      +. +|..+..+++|++|++++|++..  .+.......+       ..+..++++|.+.+..|
T Consensus       463 ~~-ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~-------~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          463 MS-IPKDVTHLQALQELNVASNQLKS--VPDGVFDRLT-------SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CC-CCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCT-------TCCCEECCSCCBCCCHH
T ss_pred             cc-cChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCC-------CCCEEEecCCCcCCCcc
Confidence            86 46666688999999999999743  1111111122       23456677887777655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=2.8e-35  Score=323.75  Aligned_cols=416  Identities=15%  Similarity=0.103  Sum_probs=275.3

Q ss_pred             cCcccEEeccCCCCCC--------------HHHHHHhccCCCccEEEcCCCCCCCchhHHhhhC-CCC-cCEEeccCCCC
Q 006752           64 KHNAEAIELRGENSVD--------------AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTC-LKELDLSRCVK  127 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~--------------~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-l~~-L~~L~L~~~~~  127 (632)
                      .+++++|+|+++....              ..+...+..+++|++|+|++|. +++..+..+.. ++. |++|++++|..
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCC
Confidence            5679999998764221              1234445589999999999997 88888888875 455 99999999965


Q ss_pred             CChhhHhhhc-CCCCccEEEccCCCCCHh----HHHHhcCCCCCCEEEcCCCCCC----hHHHHhccCCCCccEEEecCC
Q 006752          128 VTDAGMKHLL-SISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLEYLDLWGS  198 (632)
Q Consensus       128 l~~~~~~~l~-~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~n  198 (632)
                      ++......+. ++++|++|+|++|.+++.    .+..+..+++|++|++++|.+.    +..+..+.++++|++|++++|
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            5555554444 799999999999987654    4455668899999999999987    455666778999999999999


Q ss_pred             CCCchhhHhhcCCCCCcEEEccCCCC--------CCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchh
Q 006752          199 QVSNRGAAVLKMFPRLSFLNLAWTGV--------TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER  270 (632)
Q Consensus       199 ~l~~~~~~~l~~l~~L~~L~l~~n~l--------~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  270 (632)
                      .+.+ .+..+..+++|++|+++....        ..+..+++|+.|+++++....++..+..+++|++|++++|.+++..
T Consensus       231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            8876 567889999999999985321        2355677888888877666667766667777888888877765443


Q ss_pred             hhhhhhcCCCccEEeccCCCCCch---hhhhcCCCCCeeecc-----------CCCCCchHHHHHHhcCCCCcEEEccCC
Q 006752          271 EAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLS-----------SSMIGDDSVEMVACVGANLRNLNLSNT  336 (632)
Q Consensus       271 ~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~L~l~~n  336 (632)
                      ....+..+++|++|+++ +.+...   .....+++|++|+++           .+.+++.....+...+++|++|+++.+
T Consensus       310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  388 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS  388 (592)
T ss_dssp             HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred             HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence            33334566777777776 333222   233456677777776           345665555554444467777777666


Q ss_pred             cCcchhHHHHHhcCCCCcEEEcc----CCCCCh-----HHHHHHhcCCCccEEEccCCc--cccccCCCccchhhhhhhh
Q 006752          337 RFSSAGVGILAGHLPNLEILSLS----GTQIDD-----YAISYMSMMPSLKFIDISNTD--IKGMYPSGQMNVFFSAYCF  405 (632)
Q Consensus       337 ~l~~~~~~~~~~~~~~L~~L~L~----~n~l~~-----~~~~~l~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~~  405 (632)
                      .+++..+..+...+++|++|+++    .|.+++     ..+..+..+++|++|++++|.  +++..+.            
T Consensus       389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~------------  456 (592)
T 3ogk_B          389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS------------  456 (592)
T ss_dssp             CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH------------
T ss_pred             CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH------------
Confidence            66666666654556777777774    455554     244445566777777776543  3332111            


Q ss_pred             hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCc-cccccCcccccccccccc
Q 006752          406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNA  484 (632)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n  484 (632)
                                                            .....+++|++|++++|.+++.. +..+..+++|++|+|++|
T Consensus       457 --------------------------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          457 --------------------------------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             --------------------------------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             --------------------------------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence                                                  01223566777777777766532 233355677777777777


Q ss_pred             cCCCcc-hhhhccCCCCcEEeecCceeccCCCCCCC-CCCCcceEecCCC
Q 006752          485 SLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGG  532 (632)
Q Consensus       485 ~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~~~~l~-~~~~L~~L~l~~N  532 (632)
                      .+++.. +..+..+++|++|++++|+++......+. .++.+....+..+
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            766543 33345667777777777776665444433 3455555554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-35  Score=310.29  Aligned_cols=264  Identities=19%  Similarity=0.181  Sum_probs=161.4

Q ss_pred             hccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCC
Q 006752           86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN  165 (632)
Q Consensus        86 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  165 (632)
                      ++.+++|++|++++|. +++.+  .+..+++|++|++++| .+++.   .++.+++|++|++++|.+++.   .+..+++
T Consensus        38 ~~~l~~L~~L~Ls~n~-l~~~~--~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~  107 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSS-ITDMT--GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTK  107 (457)
T ss_dssp             HHHHTTCCEEECCSSC-CCCCT--TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTT
T ss_pred             hhHcCCCCEEEccCCC-cccCh--hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCc
Confidence            3445566666666655 54431  4556666666666666 44443   155566666666666666553   1556666


Q ss_pred             CCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC-CCCC--CCCCCCCCEEECCCCc
Q 006752          166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTK--LPNISSLECLNLSNCT  242 (632)
Q Consensus       166 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~--l~~l~~L~~L~L~~~~  242 (632)
                      |++|++++|.+++. +  ++.+++|++|++++|++++.   .++.+++|++|++++| .+..  +..+++|++|++++|.
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence            66666666666553 1  55666666666666666553   2555666666666666 2222  3456667777777777


Q ss_pred             ccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHH
Q 006752          243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA  322 (632)
Q Consensus       243 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  322 (632)
                      ++.++  +..+++|++|++++|.+++++    +..+++|++|++++|.+++++ +..+++|++|++++|.+++..+   .
T Consensus       182 l~~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~---~  251 (457)
T 3bz5_A          182 ITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDV---S  251 (457)
T ss_dssp             CCCCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCC---T
T ss_pred             cceec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCH---H
Confidence            66654  556677777777777776652    445677777777777777655 6667777777777777766432   2


Q ss_pred             hcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCC
Q 006752          323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS  393 (632)
Q Consensus       323 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~  393 (632)
                      .+ ++|+.|++++|               +|+.|++++|.+.+..|  ++.+++|+.|++++|...+.+|.
T Consensus       252 ~l-~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          252 TL-SKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             TC-TTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             HC-CCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence            22 66777776554               35566677776555544  45677777777777776666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.4e-34  Score=301.59  Aligned_cols=345  Identities=15%  Similarity=0.158  Sum_probs=271.4

Q ss_pred             cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      ++++++|++++|. +.+. + .++.+++|++|++++|. +++.   .++.+++|++|++++| .+++.   .++++++|+
T Consensus        41 l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCC
T ss_pred             cCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCC
Confidence            5789999999995 4432 2 68899999999999998 8775   2889999999999999 67764   278999999


Q ss_pred             EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC
Q 006752          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG  223 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  223 (632)
                      +|++++|++++. +  +..+++|++|++++|.+++.   .++.+++|++|++++|...+..  .+..+++|++|++++|.
T Consensus       110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            999999999874 2  88999999999999999984   4889999999999999554444  47889999999999999


Q ss_pred             CCCCC--CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCC
Q 006752          224 VTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK  301 (632)
Q Consensus       224 l~~l~--~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~  301 (632)
                      +++++  .+++|++|++++|.++.+  .+..+++|++|++++|++++++    +..+++|++|++++|.+++.+ +..++
T Consensus       182 l~~l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~-~~~l~  254 (457)
T 3bz5_A          182 ITELDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD-VSTLS  254 (457)
T ss_dssp             CCCCCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred             cceeccccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC-HHHCC
Confidence            98755  789999999999999987  3778999999999999999975    558899999999999999874 55677


Q ss_pred             CCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHH--------HHhc
Q 006752          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS--------YMSM  373 (632)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~  373 (632)
                      +|+.|+++.|               +|+.|++++|.+.+..+   .+.|++|+.|++++|...+.+|.        .++.
T Consensus       255 ~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~  316 (457)
T 3bz5_A          255 KLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ  316 (457)
T ss_dssp             TCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred             CCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence            7777776654               34455666665554443   14466666666666654333221        1234


Q ss_pred             CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc
Q 006752          374 MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE  453 (632)
Q Consensus       374 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~  453 (632)
                      +++|++|++++|++++. +                                                     ++++++|+
T Consensus       317 ~~~L~~L~L~~N~l~~l-~-----------------------------------------------------l~~l~~L~  342 (457)
T 3bz5_A          317 NPKLVYLYLNNTELTEL-D-----------------------------------------------------VSHNTKLK  342 (457)
T ss_dssp             CTTCCEEECTTCCCSCC-C-----------------------------------------------------CTTCTTCS
T ss_pred             cccCCEEECCCCccccc-c-----------------------------------------------------cccCCcCc
Confidence            46777777777777764 1                                                     35677888


Q ss_pred             ccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC
Q 006752          454 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK  519 (632)
Q Consensus       454 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~  519 (632)
                      +|++++|++++        ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+.
T Consensus       343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            88888888886        25677788888888875     3566788889999999988876654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2e-33  Score=287.48  Aligned_cols=304  Identities=20%  Similarity=0.299  Sum_probs=208.2

Q ss_pred             CCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEE
Q 006752          138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL  217 (632)
Q Consensus       138 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  217 (632)
                      .+++|++|+++++.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            456777777777766543  236666777777777776665432  66667777777777666543  235555555555


Q ss_pred             EccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhh
Q 006752          218 NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL  297 (632)
Q Consensus       218 ~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l  297 (632)
                      ++++|                   .+..++. +..+++|++|++++|........  +..+++|++|++++|.+.....+
T Consensus       116 ~l~~n-------------------~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~  173 (347)
T 4fmz_A          116 YLNED-------------------NISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPI  173 (347)
T ss_dssp             ECTTS-------------------CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGG
T ss_pred             ECcCC-------------------cccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhh
Confidence            55555                   4444433 44555555566555533332222  34566666666666666666556


Q ss_pred             hcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCc
Q 006752          298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL  377 (632)
Q Consensus       298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L  377 (632)
                      ..+++|++|++++|.+.+..+  +... ++|+.+++++|.+++..+   ...+++|++|++++|++++..+  +..+++|
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L  245 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQL  245 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence            677777777777777765443  3444 777777777777776554   2567888888888888776554  7788888


Q ss_pred             cEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccccccc
Q 006752          378 KFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNL  457 (632)
Q Consensus       378 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~L  457 (632)
                      ++|++++|.+++. +                                                    .+..+++|++|++
T Consensus       246 ~~L~l~~n~l~~~-~----------------------------------------------------~~~~l~~L~~L~l  272 (347)
T 4fmz_A          246 TWLEIGTNQISDI-N----------------------------------------------------AVKDLTKLKMLNV  272 (347)
T ss_dssp             CEEECCSSCCCCC-G----------------------------------------------------GGTTCTTCCEEEC
T ss_pred             CEEECCCCccCCC-h----------------------------------------------------hHhcCCCcCEEEc
Confidence            8888888887764 1                                                    3567788888899


Q ss_pred             CccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          458 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       458 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      ++|.+++.  ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|  +..+++|++|++++|++
T Consensus       273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            88888874  457788889999999999888888888888999999999999888755  77788899999999886

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=308.54  Aligned_cols=308  Identities=20%  Similarity=0.190  Sum_probs=216.1

Q ss_pred             CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECC
Q 006752          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLS  239 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~  239 (632)
                      ++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.++     ++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            4555555555555544445555555555555555555555555555555555555544444322     33445555555


Q ss_pred             CCcccchh-ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHH
Q 006752          240 NCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV  318 (632)
Q Consensus       240 ~~~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~  318 (632)
                      +|.+..++ ..+..+++|++|++++|.+..+.+                       ..+..+++|++|++++|.+++..+
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----------------------RAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----------------------TSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeCh-----------------------hhccCCCCCCEEECCCCcCcccCh
Confidence            55554332 233344455555555544433222                       345666777777777777777666


Q ss_pred             HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccch
Q 006752          319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNV  398 (632)
Q Consensus       319 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~  398 (632)
                      ..+..+ ++|+.|++++|.+.+..+..+ ..+++|++|++++|...+..+.......+|++|++++|++++. |.     
T Consensus       170 ~~l~~l-~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-----  241 (477)
T 2id5_A          170 EALSHL-HGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PY-----  241 (477)
T ss_dssp             HHHTTC-TTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CH-----
T ss_pred             hHhccc-CCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc-CH-----
Confidence            666666 788888888887776655444 5678888888888876665555555566899999999988864 32     


Q ss_pred             hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccc
Q 006752          399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH  478 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  478 (632)
                                                                   ..+.++++|++|+|++|.+++..+..|..+++|+.
T Consensus       242 ---------------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          242 ---------------------------------------------LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             ---------------------------------------------HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred             ---------------------------------------------HHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence                                                         25788899999999999999988888999999999


Q ss_pred             cccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          479 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       479 L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      |+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|++.|+|...++.++..
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~  346 (477)
T 2id5_A          277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW  346 (477)
T ss_dssp             EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred             EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence            9999999999889999999999999999999999888888999999999999999999998887766543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-33  Score=285.78  Aligned_cols=308  Identities=23%  Similarity=0.290  Sum_probs=238.3

Q ss_pred             hhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCC
Q 006752          110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTK  189 (632)
Q Consensus       110 ~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  189 (632)
                      .+..+++|++|++++| .+...  +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++
T Consensus        39 ~~~~l~~L~~L~l~~~-~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAGE-KVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             cchhcccccEEEEeCC-ccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence            3457789999999998 55543  457889999999999999987554  89999999999999999874  46899999


Q ss_pred             ccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch
Q 006752          190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE  269 (632)
Q Consensus       190 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~  269 (632)
                      |++|++++|.+++..+  +..+++|++|++++|.                   ....+..+..+++|++|++++|.+.+.
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~-------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~  170 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANH-------------------NLSDLSPLSNMTGLNYLTVTESKVKDV  170 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCT-------------------TCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCC-------------------CcccccchhhCCCCcEEEecCCCcCCc
Confidence            9999999999987544  6677776666666653                   222222344556666666666665554


Q ss_pred             hhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhc
Q 006752          270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH  349 (632)
Q Consensus       270 ~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  349 (632)
                      +.   +..+++|++|++++|.+.....+..+++|+.+++++|.+++..+  +..+ ++|++|++++|++++..+   ...
T Consensus       171 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~---~~~  241 (347)
T 4fmz_A          171 TP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP---LAN  241 (347)
T ss_dssp             GG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GTT
T ss_pred             hh---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc---hhc
Confidence            43   34667777777777777776667777888888888887776554  4444 788888888888877655   367


Q ss_pred             CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752          350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF  429 (632)
Q Consensus       350 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (632)
                      +++|++|++++|.+++.  ..+..+++|++|++++|++++. +                                     
T Consensus       242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-------------------------------------  281 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-------------------------------------  281 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-------------------------------------
T ss_pred             CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-------------------------------------
Confidence            88999999999988764  3578889999999999988774 2                                     


Q ss_pred             hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752          430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  509 (632)
Q Consensus       430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~  509 (632)
                                     .+..+++|++|++++|.+++..+..++.+++|++|++++|++++..|  +..+++|++|++++|+
T Consensus       282 ---------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          282 ---------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             ---------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             ---------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence                           35678899999999999998888888999999999999999998766  8889999999999998


Q ss_pred             ec
Q 006752          510 LT  511 (632)
Q Consensus       510 l~  511 (632)
                      |+
T Consensus       345 i~  346 (347)
T 4fmz_A          345 IK  346 (347)
T ss_dssp             --
T ss_pred             cc
Confidence            86

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=3.4e-34  Score=315.37  Aligned_cols=426  Identities=19%  Similarity=0.214  Sum_probs=293.4

Q ss_pred             cCcccEEeccCCCCCCH--------------HHHHHhccCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCC
Q 006752           64 KHNAEAIELRGENSVDA--------------EWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKV  128 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~--------------~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l  128 (632)
                      .+++++|+++++....+              .+...+..+++|++|++++|. +++..+..+. .+++|++|++++|..+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            35677777777642211              122334567777777777776 6666666665 5777777777777555


Q ss_pred             ChhhHhhhc-CCCCccEEEccCCCCCHhHHHHhc----CCCCCCEEEcCCCC--CChHHHHh-ccCCCCccEEEecCCCC
Q 006752          129 TDAGMKHLL-SISTLEKLWLSETGLTADGIALLS----SLQNLSVLDLGGLP--VTDLVLRS-LQVLTKLEYLDLWGSQV  200 (632)
Q Consensus       129 ~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--i~~~~~~~-l~~l~~L~~L~L~~n~l  200 (632)
                      ++.....+. ++++|++|++++|.+++..+..+.    .+++|++|++++|.  +....... +..+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            554444444 677777777777765543332222    55677777777765  43332222 24567777777777632


Q ss_pred             CchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEE-EeeCCCCCchhhhhhhhcCC
Q 006752          201 SNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI-SLAGTTFINEREAFLYIETS  279 (632)
Q Consensus       201 ~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~  279 (632)
                      .+..+..+..+++|++|+++.+..            ++..+.+.+++..+.++++|+.+ .+.+.....++..  ...++
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~~~------------~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~--~~~~~  289 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGYTA------------EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCS  289 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBCCC------------CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG--HHHHT
T ss_pred             HHHHHHHHhcCCcceEcccccccC------------ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH--HHhhC
Confidence            223555666666666666654321            13344556677777788888888 4444333233322  23678


Q ss_pred             CccEEeccCCCCCch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEc---------cCCcCcchhHHHHH
Q 006752          280 LLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL---------SNTRFSSAGVGILA  347 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~~  347 (632)
                      +|++|++++|.++..   ..+..+++|++|++++| +++.....+...+++|++|++         +.+.+++.....+.
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            999999999997654   34568899999999998 666666666665599999999         34578887777776


Q ss_pred             hcCCCCcEEEccCCCCChHHHHHHh-cCCCccEEEcc--C----CccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752          348 GHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDIS--N----TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI  420 (632)
Q Consensus       348 ~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~Ls--~----n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (632)
                      ..+++|++|.++++.+++..+..+. .+++|+.|+++  +    +.+++. |..                          
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~--------------------------  421 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PLD--------------------------  421 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CTH--------------------------
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-chh--------------------------
Confidence            7799999999999999998887776 69999999999  3    334322 110                          


Q ss_pred             cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccC-cccccccccccccCCCcchhhh-ccCC
Q 006752          421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIHLSLRNASLTDVSLHQL-SSLS  498 (632)
Q Consensus       421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~  498 (632)
                                       ..++  ..+.++++|++|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..++
T Consensus       422 -----------------~~~~--~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          422 -----------------IGFG--AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             -----------------HHHH--HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             -----------------hHHH--HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence                             0000  2367889999999988 788776676766 8999999999999988777666 6799


Q ss_pred             CCcEEeecCceeccCCCC-CCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeee
Q 006752          499 KLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  553 (632)
Q Consensus       499 ~L~~L~ls~N~l~~~~~~-~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  553 (632)
                      +|++|++++|++++..+. ....+++|++|++++|++ +......+.+..|.+++.
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEE
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEE
Confidence            999999999999765544 344579999999999997 778888888888888653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=3.3e-33  Score=297.50  Aligned_cols=372  Identities=22%  Similarity=0.231  Sum_probs=247.4

Q ss_pred             CCccEEEcCCCCCCCchhHHh-hhCCCCcCEEeccCCCCCChhh----HhhhcCCCCccEEEccCCCCCHhHHHHhc-CC
Q 006752           90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAG----MKHLLSISTLEKLWLSETGLTADGIALLS-SL  163 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~l  163 (632)
                      ++|++|++++++ +++..... +..+++|++|++++| .+++..    +..+..+++|++|++++|.+++..+..+. .+
T Consensus         3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            345666666655 55444433 445666666666666 455432    22333455555555555555544333222 23


Q ss_pred             C----CCCEEEcCCCCCCh----HHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCE
Q 006752          164 Q----NLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLEC  235 (632)
Q Consensus       164 ~----~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~  235 (632)
                      +    +|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+..                         
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------------  135 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------------  135 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------------
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------------
Confidence            3    45555555555552    23444455555555555555544333332221                         


Q ss_pred             EECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhh---hhhhhcCCCccEEeccCCCCCch--hhhh-----cCCCCC
Q 006752          236 LNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINERE---AFLYIETSLLSFLDVSNSSLSRF--CFLT-----QMKALE  304 (632)
Q Consensus       236 L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~ls~n~l~~~--~~l~-----~~~~L~  304 (632)
                                   .+. ..++|++|++++|.+++...   ...+..+++|++|++++|.+...  ..+.     ..++|+
T Consensus       136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence                         111 23345555555555544221   12345689999999999998765  2222     366999


Q ss_pred             eeeccCCCCCchH----HHHHHhcCCCCcEEEccCCcCcchhHHHHH----hcCCCCcEEEccCCCCChH----HHHHHh
Q 006752          305 HLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSSAGVGILA----GHLPNLEILSLSGTQIDDY----AISYMS  372 (632)
Q Consensus       305 ~L~l~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~----~~~~l~  372 (632)
                      +|++++|.+++..    +..+... ++|++|++++|++++.....+.    ..+++|++|++++|.+++.    .+..+.
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  281 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  281 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             EEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence            9999999999854    5555555 9999999999999886654432    3589999999999999986    466677


Q ss_pred             cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcc
Q 006752          373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL  452 (632)
Q Consensus       373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L  452 (632)
                      .+++|++|++++|.+.+..+..+..                                              ......++|
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~----------------------------------------------~l~~~~~~L  315 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCE----------------------------------------------TLLEPGCQL  315 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHH----------------------------------------------HHTSTTCCC
T ss_pred             hCCCcceEECCCCCCchHHHHHHHH----------------------------------------------HhccCCccc
Confidence            8999999999999987653332111                                              011233699


Q ss_pred             cccccCccCCCCC----ccccccCcccccccccccccCCCcchhhhcc-----CCCCcEEeecCceecc----CCCCCCC
Q 006752          453 ERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTN----SGLGSFK  519 (632)
Q Consensus       453 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~ls~N~l~~----~~~~~l~  519 (632)
                      ++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|++++    .++..+.
T Consensus       316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  395 (461)
T 1z7x_W          316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  395 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence            9999999999986    3455667799999999999999877766653     7899999999999996    5677788


Q ss_pred             CCCCcceEecCCCcccChHHHHHHHHHcCC
Q 006752          520 PPRSLKLLDLHGGWLLTEDAILQFCKMHPR  549 (632)
Q Consensus       520 ~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~  549 (632)
                      .+++|++|++++|++ ++.....+.+..+.
T Consensus       396 ~~~~L~~L~l~~N~i-~~~~~~~l~~~l~~  424 (461)
T 1z7x_W          396 ANHSLRELDLSNNCL-GDAGILQLVESVRQ  424 (461)
T ss_dssp             HCCCCCEEECCSSSC-CHHHHHHHHHHHTS
T ss_pred             hCCCccEEECCCCCC-CHHHHHHHHHHhcc
Confidence            889999999999997 77777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.4e-33  Score=288.87  Aligned_cols=315  Identities=17%  Similarity=0.238  Sum_probs=218.4

Q ss_pred             CCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEE
Q 006752          139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN  218 (632)
Q Consensus       139 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  218 (632)
                      ++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666677776666655555566677777777777776665555666777777777777777666666666666666666


Q ss_pred             ccCCCCCCCC-----CCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752          219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (632)
Q Consensus       219 l~~n~l~~l~-----~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  292 (632)
                      +++|.++.++     .+++|++|++++|.+..+++ .+..+++|++|++++|.+++++                      
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------  181 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  181 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------------------
Confidence            6665555432     34555555555555554433 2345555555555555554432                      


Q ss_pred             chhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHh
Q 006752          293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS  372 (632)
Q Consensus       293 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  372 (632)
                          +..+++|++|++++|.+++..      ..++|++|++++|.+.....    ...++|++|++++|.+++.  ..+.
T Consensus       182 ----~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          182 ----LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             ----GGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred             ----cccccccceeecccccccccC------CCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HHHc
Confidence                334455666666666555421      11567777777777665422    2357888999999888764  4678


Q ss_pred             cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcc
Q 006752          373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL  452 (632)
Q Consensus       373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L  452 (632)
                      .+++|++|++++|.+++..|.                                                   .+.++++|
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------------~~~~l~~L  274 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYH---------------------------------------------------PFVKMQRL  274 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESG---------------------------------------------------GGTTCSSC
T ss_pred             CCCCccEEECCCCcCCCcChh---------------------------------------------------HccccccC
Confidence            899999999999999887665                                                   56778999


Q ss_pred             cccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752          453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  532 (632)
Q Consensus       453 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N  532 (632)
                      ++|++++|++++ ++..+..+++|++|++++|++++ +|..+..+++|++|++++|+++...   +..+++|+.|++++|
T Consensus       275 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          275 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred             CEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCC
Confidence            999999999988 56667789999999999999997 5667888999999999999998863   567789999999999


Q ss_pred             cccChHHHHHHHHHcC
Q 006752          533 WLLTEDAILQFCKMHP  548 (632)
Q Consensus       533 ~l~~~~~~~~~~~~~~  548 (632)
                      ++.|.+. ..+.+..+
T Consensus       350 ~~~~~~~-~~~~~~~~  364 (390)
T 3o6n_A          350 DWDCNSL-RALFRNVA  364 (390)
T ss_dssp             CEEHHHH-HHHTTTCC
T ss_pred             CccchhH-HHHHHHHH
Confidence            9966543 34444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=1.1e-33  Score=311.21  Aligned_cols=433  Identities=17%  Similarity=0.174  Sum_probs=326.0

Q ss_pred             cEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCc-------------hhHHhhh-CCCCcCEEeccCCCCCChhhH
Q 006752           68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS-------------SALWALT-GMTCLKELDLSRCVKVTDAGM  133 (632)
Q Consensus        68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~-------------~~~~~l~-~l~~L~~L~L~~~~~l~~~~~  133 (632)
                      ..+.+..+  ........+.++++|++|++++|..+.+             .....+. .+++|++|+|++| .+++..+
T Consensus        53 ~~l~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~  129 (592)
T 3ogk_B           53 EHVTMALC--YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL  129 (592)
T ss_dssp             CEEEESCG--GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred             cEEEEeec--cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence            34555543  2223456778999999999988753221             1222333 8999999999999 7888888


Q ss_pred             hhhcC-CCC-ccEEEccCCC-CCHhH-HHHhcCCCCCCEEEcCCCCCChH----HHHhccCCCCccEEEecCCCCC----
Q 006752          134 KHLLS-IST-LEKLWLSETG-LTADG-IALLSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVS----  201 (632)
Q Consensus       134 ~~l~~-l~~-L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~----  201 (632)
                      ..+.. ++. |++|++++|. ++... +.....+++|++|++++|.+.+.    ++..+..+++|++|++++|.++    
T Consensus       130 ~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~  209 (592)
T 3ogk_B          130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP  209 (592)
T ss_dssp             HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred             HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence            87775 445 9999999986 43322 33445899999999999987654    4455678999999999999987    


Q ss_pred             chhhHhhcCCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCccc----chhccccCCCCCcEEEeeCCCCCchhhhh
Q 006752          202 NRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTID----SILEGNENKAPLAKISLAGTTFINEREAF  273 (632)
Q Consensus       202 ~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  273 (632)
                      +..+..+..+++|++|++++|.+.+++    .+++|++|+++.....    ..+..+..+++|+.++++++....++.. 
T Consensus       210 ~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-  288 (592)
T 3ogk_B          210 KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-  288 (592)
T ss_dssp             HHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-
T ss_pred             HHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-
Confidence            345566778999999999999887644    6799999999854322    3445666889999999998765555543 


Q ss_pred             hhhcCCCccEEeccCCCCCch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEcc-----------CCcCc
Q 006752          274 LYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS-----------NTRFS  339 (632)
Q Consensus       274 ~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~-----------~n~l~  339 (632)
                       +..+++|++|++++|.++..   ..+..+++|++|+++ +.+.+.....+...+++|++|+++           .+.++
T Consensus       289 -~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          289 -FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             -GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             -HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence             44788999999999997665   336889999999999 566666666666556999999999           36788


Q ss_pred             chhHHHHHhcCCCCcEEEccCCCCChHHHHHHhc-CCCccEEEcc----CCccccccCCCccchhhhhhhhhhhhhceec
Q 006752          340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLH  414 (632)
Q Consensus       340 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~Ls----~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (632)
                      +.....+...|++|++|+++.+.+++..+..++. +++|+.|+++    .|.+++. |..                    
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~--------------------  425 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD--------------------  425 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH--------------------
T ss_pred             HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH--------------------
Confidence            7777776678999999999999999988888875 9999999997    5556553 210                    


Q ss_pred             cccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc--CCCCCccccccC-cccccccccccccCCCc-c
Q 006752          415 AYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT--QVSDATLFPLST-FKELIHLSLRNASLTDV-S  490 (632)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~-~  490 (632)
                                             +.++  ..+.++++|++|++++|  .+++..+..+.. +++|++|++++|++++. .
T Consensus       426 -----------------------~~~~--~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          426 -----------------------NGVR--SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             -----------------------HHHH--HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             -----------------------HHHH--HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence                                   0000  24677899999999864  477766666654 89999999999999874 4


Q ss_pred             hhhhccCCCCcEEeecCceeccCCCC-CCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeee
Q 006752          491 LHQLSSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  553 (632)
Q Consensus       491 ~~~~~~l~~L~~L~ls~N~l~~~~~~-~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  553 (632)
                      +..+..+++|++|++++|++++.... .+..+++|++|++++|++ ++.....+.+..|.+.+.
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA-SMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC-CTTCTTGGGGCCTTEEEE
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC-CHHHHHHHHHhCCCcEEE
Confidence            55668899999999999998765333 334689999999999995 666666666666765443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5e-33  Score=297.25  Aligned_cols=299  Identities=19%  Similarity=0.170  Sum_probs=156.8

Q ss_pred             CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752          116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL  195 (632)
Q Consensus       116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  195 (632)
                      ++++|++++| .++...+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4444444444 344443444444445555555544444444444444555555555555444433333444555555555


Q ss_pred             cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccch-hccccCCCCCcEEEeeCCCCCchhhhhh
Q 006752          196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFL  274 (632)
Q Consensus       196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~  274 (632)
                      ++|.+++..+..+..+++|++|++++                   |.+..+ +..+..+++|++|++++|.+.+++.. .
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~-------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~  171 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGD-------------------NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-A  171 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECC-------------------TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-H
T ss_pred             CCCccccCChhHccccccCCEEECCC-------------------CccceeChhhccCCCCCCEEECCCCcCcccChh-H
Confidence            55555444444444444444444433                   333322 22334555566666666655554432 2


Q ss_pred             hhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCC
Q 006752          275 YIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN  352 (632)
Q Consensus       275 ~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  352 (632)
                      +..+++|+.|++++|.+...  ..+..+++|++|++++|...+..+...... .+|++|++++|++++.....+ ..+++
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~  249 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAV-RHLVY  249 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHH-TTCTT
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHh-cCccc
Confidence            34556666666666665554  345566677777777665554444333333 456666666666655444333 45566


Q ss_pred             CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ  432 (632)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (632)
                      |++|++++|++++..+..+..+++|+.|++++|++++..|.                                       
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------------------  290 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY---------------------------------------  290 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT---------------------------------------
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH---------------------------------------
Confidence            66666666666555555555666666666666666555443                                       


Q ss_pred             cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752          433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  488 (632)
Q Consensus       433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  488 (632)
                                  .|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       291 ------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          291 ------------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             ------------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ------------HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence                        34455566666666666666555555556666666666665553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.9e-33  Score=288.03  Aligned_cols=288  Identities=15%  Similarity=0.171  Sum_probs=171.5

Q ss_pred             CCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCE
Q 006752           89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV  168 (632)
Q Consensus        89 ~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  168 (632)
                      ++++++|+++++. ++..+...+.++++|++|++++| .++...+..|.++++|++|++++|.+++..+..|..+++|++
T Consensus        44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3555566665555 55544444555566666666655 455544445555666666666666555554555555666666


Q ss_pred             EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC--CCCCCCEEECCCCcccch
Q 006752          169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI  246 (632)
Q Consensus       169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~l~~L~~L~L~~~~l~~~  246 (632)
                      |++++|.+....+..|+.+++|++|++++|.+++..+..+..+++|++|++++|.++.++  .+++|++|++++|.+..+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence            666666655433333455566666666666665555555555666666666666555432  455666666666655533


Q ss_pred             hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752          247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA  326 (632)
Q Consensus       247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  326 (632)
                      +    ..++|++|++++|.+..++..    ..++|+.|++++|.+++.+.+..+++|++|++++|.+++..+..+..+ +
T Consensus       202 ~----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~  272 (390)
T 3o6n_A          202 A----IPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-Q  272 (390)
T ss_dssp             E----CCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC-S
T ss_pred             C----CCCcceEEECCCCeeeecccc----ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc-c
Confidence            2    223566666666666554332    235667777777776666666777777777777777776666666555 6


Q ss_pred             CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccc
Q 006752          327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~  390 (632)
                      +|++|++++|++++.....  ..+++|++|++++|++++ .|..+..+++|++|++++|++++.
T Consensus       273 ~L~~L~L~~n~l~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          273 RLERLYISNNRLVALNLYG--QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             SCCEEECCSSCCCEEECSS--SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             cCCEEECCCCcCcccCccc--CCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee
Confidence            7777777777766542211  456777777777777764 334456677777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.3e-32  Score=298.38  Aligned_cols=308  Identities=17%  Similarity=0.240  Sum_probs=215.0

Q ss_pred             CCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEE
Q 006752          139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN  218 (632)
Q Consensus       139 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  218 (632)
                      +.+++.+++++|.+....+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45666666766666665555566677777777777777666556666777777777777777666666666666666666


Q ss_pred             ccCCCCCCCC-----CCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752          219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (632)
Q Consensus       219 l~~n~l~~l~-----~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  292 (632)
                      +++|.++.++     .+++|++|++++|.+..+++ .+..+++|++|++++|.+.                         
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------  184 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------------------  184 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-------------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-------------------------
Confidence            6555554432     34445555555555544333 2334455555555555444                         


Q ss_pred             chhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHh
Q 006752          293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS  372 (632)
Q Consensus       293 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  372 (632)
                      +. .+..+++|+.|++++|.+++..      ..++|++|++++|.+.....    ...++|+.|++++|.+++.  ..+.
T Consensus       185 ~~-~~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~  251 (597)
T 3oja_B          185 HV-DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL  251 (597)
T ss_dssp             BC-CGGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC--GGGG
T ss_pred             Cc-ChhhhhhhhhhhcccCcccccc------CCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC--hhhc
Confidence            43 2344556666666666665421      11567777777777665432    2246888999999888863  5688


Q ss_pred             cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcc
Q 006752          373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL  452 (632)
Q Consensus       373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L  452 (632)
                      .+++|+.|++++|.+.+..|.                                                   .+.++++|
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~~l~~L  280 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYH---------------------------------------------------PFVKMQRL  280 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESG---------------------------------------------------GGTTCSSC
T ss_pred             cCCCCCEEECCCCccCCCCHH---------------------------------------------------HhcCccCC
Confidence            899999999999999987666                                                   56778999


Q ss_pred             cccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752          453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  532 (632)
Q Consensus       453 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N  532 (632)
                      ++|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++++..   +..+++|+.|++++|
T Consensus       281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred             CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCC
Confidence            999999999998 57777789999999999999997 6677889999999999999998863   566789999999999


Q ss_pred             cccChHHH
Q 006752          533 WLLTEDAI  540 (632)
Q Consensus       533 ~l~~~~~~  540 (632)
                      ++.|.+..
T Consensus       356 ~~~~~~~~  363 (597)
T 3oja_B          356 DWDCNSLR  363 (597)
T ss_dssp             CEEHHHHH
T ss_pred             CCCChhHH
Confidence            99666533

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.9e-32  Score=297.83  Aligned_cols=240  Identities=15%  Similarity=0.170  Sum_probs=142.3

Q ss_pred             CCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCE
Q 006752           89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV  168 (632)
Q Consensus        89 ~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  168 (632)
                      +++++.|++++|. ++..+...+.++++|++|++++| .++...+..|..+++|++|+|++|.+++..+..|..+++|++
T Consensus        50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4566777777766 66666666667777777777776 566655556667777777777777777666666677777777


Q ss_pred             EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC--CCCCCCEEECCCCcccch
Q 006752          169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI  246 (632)
Q Consensus       169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~l~~L~~L~L~~~~l~~~  246 (632)
                      |++++|.+.+..+..|+.+++|++|++++|.+++..|..+..+++|++|++++|.++.++  .+++|+.|++++|.+..+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence            777777776655445567777777777777777666666677777777777776666533  455666666666655533


Q ss_pred             hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752          247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA  326 (632)
Q Consensus       247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  326 (632)
                      +    ..++|+.|++++|.+..++...    .++|+.|++++|.+++...+..+++|++|++++|.+++..|..+..+ +
T Consensus       208 ~----~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~  278 (597)
T 3oja_B          208 A----IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-Q  278 (597)
T ss_dssp             E----CCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC-S
T ss_pred             c----CCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc-c
Confidence            2    2335555555555554443321    23455555555555444444444555555555554444433333333 3


Q ss_pred             CCcEEEccCCcCc
Q 006752          327 NLRNLNLSNTRFS  339 (632)
Q Consensus       327 ~L~~L~l~~n~l~  339 (632)
                      +|++|++++|.++
T Consensus       279 ~L~~L~Ls~N~l~  291 (597)
T 3oja_B          279 RLERLYISNNRLV  291 (597)
T ss_dssp             SCCEEECTTSCCC
T ss_pred             CCCEEECCCCCCC
Confidence            4444444444333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=1.1e-29  Score=279.35  Aligned_cols=391  Identities=20%  Similarity=0.229  Sum_probs=254.6

Q ss_pred             hcCcccEEeccCCCCCCHHHHHHhc-cCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCCChhhHhhhc---
Q 006752           63 FKHNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL---  137 (632)
Q Consensus        63 ~~~~l~~L~Ls~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~---  137 (632)
                      .+++|++|+|++|. +++.....+. .+++|++|++++|..++......+. ++++|++|++++| .+++.....+.   
T Consensus       103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHh
Confidence            46899999999995 7776666665 7999999999999657766565555 8999999999999 46554444333   


Q ss_pred             -CCCCccEEEccCCC--CCHhHH-HHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCC-------CCchhhH
Q 006752          138 -SISTLEKLWLSETG--LTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-------VSNRGAA  206 (632)
Q Consensus       138 -~l~~L~~L~L~~n~--i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~  206 (632)
                       .+++|++|++++|.  +..... ..+..+++|++|++++|...+.++..+..+++|++|+++.+.       +.+ .+.
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence             67899999999996  554333 334578999999999995444477888899999999977654       222 344


Q ss_pred             hhcCCCCCcEE-EccCCCCCCCC----CCCCCCEEECCCCcccc--hhccccCCCCCcEEEeeCCCCCchhhhhhhhcCC
Q 006752          207 VLKMFPRLSFL-NLAWTGVTKLP----NISSLECLNLSNCTIDS--ILEGNENKAPLAKISLAGTTFINEREAFLYIETS  279 (632)
Q Consensus       207 ~l~~l~~L~~L-~l~~n~l~~l~----~l~~L~~L~L~~~~l~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  279 (632)
                      .+.++++|+.+ .+.......++    .+++|++|++++|.++.  +...+..+++|++|++++| +...........++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            77889999998 44443333333    46788888888888662  3334557788888888877 43322222233577


Q ss_pred             CccEEeccC---------CCCCch--hhh-hcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEcc--C----CcCc--
Q 006752          280 LLSFLDVSN---------SSLSRF--CFL-TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS--N----TRFS--  339 (632)
Q Consensus       280 ~L~~L~ls~---------n~l~~~--~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~--~----n~l~--  339 (632)
                      +|++|++++         +.++..  ..+ ..+++|++|.+..+.+++..+..+...+++|++|+++  +    +.++  
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            788887733         334332  222 3467777776666777766666665444677777776  3    4455  


Q ss_pred             --chhHHHHHhcCCCCcEEEccCCCCChHHHHHHhc-CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccc
Q 006752          340 --SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAY  416 (632)
Q Consensus       340 --~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (632)
                        +.....++..+++|++|++++ .+++..+..++. +++|++|++++|.+++..+.                       
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------------------  474 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------------------  474 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------------------
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------------------
Confidence              223333345667777777766 566666655554 66777777777766543221                       


Q ss_pred             cccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc-ccCcccccccccccccCCCcchhhh-
Q 006752          417 GYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP-LSTFKELIHLSLRNASLTDVSLHQL-  494 (632)
Q Consensus       417 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~-  494 (632)
                                                 ....++++|++|+|++|.+++..+.. ...+++|+.|++++|+++......+ 
T Consensus       475 ---------------------------~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  527 (594)
T 2p1m_B          475 ---------------------------HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG  527 (594)
T ss_dssp             ---------------------------HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH
T ss_pred             ---------------------------HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH
Confidence                                       01245667777777777665543332 2346677777777776654444444 


Q ss_pred             ccCCCCcEEeecCc
Q 006752          495 SSLSKLTNLSIRDA  508 (632)
Q Consensus       495 ~~l~~L~~L~ls~N  508 (632)
                      ..++.|+...+..+
T Consensus       528 ~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          528 QKMPKLNVEVIDER  541 (594)
T ss_dssp             HHCTTEEEEEECSS
T ss_pred             HhCCCCEEEEecCC
Confidence            34566655555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=6.6e-29  Score=251.84  Aligned_cols=288  Identities=17%  Similarity=0.216  Sum_probs=178.1

Q ss_pred             CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (632)
Q Consensus       140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  219 (632)
                      .+++.++++++.++. .|..+  .+++++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++
T Consensus        31 c~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            367778887777664 23222  256777777777777766556777777777777777777666666666666666666


Q ss_pred             cCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----h
Q 006752          220 AWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----C  295 (632)
Q Consensus       220 ~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~  295 (632)
                      ++|.++.++                   ..++  ++|++|++++|.+.+++.. .+..+++|++|++++|.+...    .
T Consensus       108 s~n~l~~l~-------------------~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~  165 (330)
T 1xku_A          108 SKNQLKELP-------------------EKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENG  165 (330)
T ss_dssp             CSSCCSBCC-------------------SSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred             CCCcCCccC-------------------hhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChh
Confidence            555554433                   3222  4555555555555544332 233455555555555555321    3


Q ss_pred             hhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCC
Q 006752          296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP  375 (632)
Q Consensus       296 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  375 (632)
                      .+..+++|++|++++|.++                         ....    ...++|++|++++|++++..+..+..++
T Consensus       166 ~~~~l~~L~~L~l~~n~l~-------------------------~l~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          166 AFQGMKKLSYIRIADTNIT-------------------------TIPQ----GLPPSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             GGGGCTTCCEEECCSSCCC-------------------------SCCS----SCCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             hccCCCCcCEEECCCCccc-------------------------cCCc----cccccCCEEECCCCcCCccCHHHhcCCC
Confidence            3445555555555555544                         2111    1125677777777777666666677777


Q ss_pred             CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccccc
Q 006752          376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERL  455 (632)
Q Consensus       376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L  455 (632)
                      +|++|++++|.+++..+.                                                   .+..+++|++|
T Consensus       217 ~L~~L~Ls~n~l~~~~~~---------------------------------------------------~~~~l~~L~~L  245 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNG---------------------------------------------------SLANTPHLREL  245 (330)
T ss_dssp             TCCEEECCSSCCCEECTT---------------------------------------------------TGGGSTTCCEE
T ss_pred             CCCEEECCCCcCceeChh---------------------------------------------------hccCCCCCCEE
Confidence            777777777777765443                                                   35566777777


Q ss_pred             ccCccCCCCCccccccCcccccccccccccCCCcchhhhcc------CCCCcEEeecCceecc--CCCCCCCCCCCcceE
Q 006752          456 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLL  527 (632)
Q Consensus       456 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~ls~N~l~~--~~~~~l~~~~~L~~L  527 (632)
                      ++++|.++. +|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|.+..  ..|..|..+..++.+
T Consensus       246 ~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l  324 (330)
T 1xku_A          246 HLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  324 (330)
T ss_dssp             ECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             ECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence            777777774 5666777777777777777777766666643      3677778888887754  456677777788888


Q ss_pred             ecCCCc
Q 006752          528 DLHGGW  533 (632)
Q Consensus       528 ~l~~N~  533 (632)
                      ++++|+
T Consensus       325 ~L~~N~  330 (330)
T 1xku_A          325 QLGNYK  330 (330)
T ss_dssp             EC----
T ss_pred             EecccC
Confidence            887774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=6.3e-29  Score=251.97  Aligned_cols=289  Identities=16%  Similarity=0.148  Sum_probs=187.5

Q ss_pred             CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752          116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL  195 (632)
Q Consensus       116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  195 (632)
                      ++++++++++ .++.. +..+  .+.|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|+.+++|++|++
T Consensus        32 ~l~~l~~~~~-~l~~l-p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTS-CCCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCC-Ccccc-CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            7999999988 55543 2222  378999999999999877778999999999999999999988889999999999999


Q ss_pred             cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchh-hhh
Q 006752          196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINER-EAF  273 (632)
Q Consensus       196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~-~~~  273 (632)
                      ++|.++.. |..+.  ++|++|++                   ++|.+..++. .+..+++|++|++++|.+.... ...
T Consensus       108 s~n~l~~l-~~~~~--~~L~~L~l-------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  165 (330)
T 1xku_A          108 SKNQLKEL-PEKMP--KTLQELRV-------------------HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG  165 (330)
T ss_dssp             CSSCCSBC-CSSCC--TTCCEEEC-------------------CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred             CCCcCCcc-Chhhc--ccccEEEC-------------------CCCcccccCHhHhcCCccccEEECCCCcCCccCcChh
Confidence            99998743 32221  44555554                   4454444333 2345666666666666664311 112


Q ss_pred             hhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCC
Q 006752          274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL  353 (632)
Q Consensus       274 ~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  353 (632)
                      .+..+++|++|++++|.++.++... .++|++|++++|.+++..+..+                          ..+++|
T Consensus       166 ~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~--------------------------~~l~~L  218 (330)
T 1xku_A          166 AFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASL--------------------------KGLNNL  218 (330)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGG--------------------------TTCTTC
T ss_pred             hccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHh--------------------------cCCCCC
Confidence            3456778888888888776542111 1455555555555544333333                          345566


Q ss_pred             cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV  433 (632)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  433 (632)
                      ++|++++|.+++..+..+..+++|++|++++|+++. +|.                                        
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~----------------------------------------  257 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG----------------------------------------  257 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT----------------------------------------
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh----------------------------------------
Confidence            666666666655555556666666677776666663 343                                        


Q ss_pred             ccccccccchHHhhcCCcccccccCccCCCCCccccccC------cccccccccccccCCC--cchhhhccCCCCcEEee
Q 006752          434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSI  505 (632)
Q Consensus       434 ~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l  505 (632)
                                 .+..+++|++|++++|.+++..+..|..      .+.|+.|++++|.+..  ..|..|..+.+++.+++
T Consensus       258 -----------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L  326 (330)
T 1xku_A          258 -----------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL  326 (330)
T ss_dssp             -----------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred             -----------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence                       2345566777777777777655555543      3567777777777653  45667777788888888


Q ss_pred             cCce
Q 006752          506 RDAV  509 (632)
Q Consensus       506 s~N~  509 (632)
                      ++|+
T Consensus       327 ~~N~  330 (330)
T 1xku_A          327 GNYK  330 (330)
T ss_dssp             ----
T ss_pred             cccC
Confidence            7774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.8e-30  Score=256.99  Aligned_cols=250  Identities=17%  Similarity=0.208  Sum_probs=211.4

Q ss_pred             CCCCEEECCCCccc---chhccccCCCCCcEEEeeC-CCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCC
Q 006752          231 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE  304 (632)
Q Consensus       231 ~~L~~L~L~~~~l~---~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~  304 (632)
                      .++++|++++|.+.   .+|..+..+++|++|++++ |.+.+..+. .+..+++|++|++++|.+++.  ..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            46777777777776   4777788888888888885 777653332 355788888888888888754  5688899999


Q ss_pred             eeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCC-CCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752          305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (632)
Q Consensus       305 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  383 (632)
                      +|++++|.+++..|..+..+ ++|++|++++|++++..+..+ +.++ +|++|++++|++++..|..+..++ |++|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999888788777777 899999999999987777766 5566 899999999999888888888887 9999999


Q ss_pred             CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752          384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  463 (632)
Q Consensus       384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~  463 (632)
                      +|.+++..|.                                                   .+..+++|++|++++|.++
T Consensus       206 ~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          206 RNMLEGDASV---------------------------------------------------LFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             SSEEEECCGG---------------------------------------------------GCCTTSCCSEEECCSSEEC
T ss_pred             CCcccCcCCH---------------------------------------------------HHhcCCCCCEEECCCCcee
Confidence            9999887665                                                   4677899999999999999


Q ss_pred             CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752          464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE  537 (632)
Q Consensus       464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~  537 (632)
                      +..+. +..+++|++|+|++|++++.+|.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+..|+
T Consensus       235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            86655 788999999999999999989999999999999999999999988876 7889999999999996564

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.6e-29  Score=252.52  Aligned_cols=288  Identities=17%  Similarity=0.186  Sum_probs=159.3

Q ss_pred             CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (632)
Q Consensus       140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  219 (632)
                      .+++.++++++.++. .|..+  .++|++|++++|.+.+..+..|.++++|++|++++|++++..|..+..+++|++|++
T Consensus        33 c~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            368888888888764 33333  367888888888888776777888888888888888888877778888877777777


Q ss_pred             cCCCCCCCCC--CCCCCEEECCCCcccchhcc-ccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhh
Q 006752          220 AWTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF  296 (632)
Q Consensus       220 ~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  296 (632)
                      ++|.++.++.  .++|++|++++|.+..++.. +..+++|++|++++|.+......                     ...
T Consensus       110 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~  168 (332)
T 2ft3_A          110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE---------------------PGA  168 (332)
T ss_dssp             CSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC---------------------TTS
T ss_pred             CCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC---------------------ccc
Confidence            7777666542  24555555555555544432 23444444444444443321000                     022


Q ss_pred             hhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCC
Q 006752          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (632)
Q Consensus       297 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  376 (632)
                      +..+ +|++|++++|.+++.. ..                            ..++|++|++++|.+++..+..+..+++
T Consensus       169 ~~~l-~L~~L~l~~n~l~~l~-~~----------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~  218 (332)
T 2ft3_A          169 FDGL-KLNYLRISEAKLTGIP-KD----------------------------LPETLNELHLDHNKIQAIELEDLLRYSK  218 (332)
T ss_dssp             SCSC-CCSCCBCCSSBCSSCC-SS----------------------------SCSSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred             ccCC-ccCEEECcCCCCCccC-cc----------------------------ccCCCCEEECCCCcCCccCHHHhcCCCC
Confidence            3333 5566666666555311 10                            0134444444444444444444445555


Q ss_pred             ccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccc
Q 006752          377 LKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLN  456 (632)
Q Consensus       377 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~  456 (632)
                      |++|++++|++++..+.                                                   .+..+++|++|+
T Consensus       219 L~~L~L~~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~  247 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENG---------------------------------------------------SLSFLPTLRELH  247 (332)
T ss_dssp             CSCCBCCSSCCCCCCTT---------------------------------------------------GGGGCTTCCEEE
T ss_pred             CCEEECCCCcCCcCChh---------------------------------------------------HhhCCCCCCEEE
Confidence            55555555555544332                                                   234445555555


Q ss_pred             cCccCCCCCccccccCcccccccccccccCCCcchhhhcc------CCCCcEEeecCceec--cCCCCCCCCCCCcceEe
Q 006752          457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLD  528 (632)
Q Consensus       457 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~ls~N~l~--~~~~~~l~~~~~L~~L~  528 (632)
                      +++|+++. +|..+..+++|++|++++|++++..+..|..      .++|+.|++++|++.  +..+..|..+++|+.++
T Consensus       248 L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          248 LDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             CCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             CCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            55555553 4444555555555555555555544444433      244556666666555  44455555556666666


Q ss_pred             cCCCc
Q 006752          529 LHGGW  533 (632)
Q Consensus       529 l~~N~  533 (632)
                      +++|+
T Consensus       327 l~~n~  331 (332)
T 2ft3_A          327 FGNYK  331 (332)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            65553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.6e-29  Score=249.03  Aligned_cols=256  Identities=16%  Similarity=0.160  Sum_probs=183.8

Q ss_pred             EECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----hhhhcCCCCCeeeccCC
Q 006752          236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSS  311 (632)
Q Consensus       236 L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~l~~n  311 (632)
                      ++++++.++.+|..+.  ++|++|++++|.+..++.. .+..+++|++|++++|.++..    ..+..+++|++|++++|
T Consensus        12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            3444444444443322  3444444444444443322 223445555555555554432    33344566666666666


Q ss_pred             CCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc-c
Q 006752          312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG-M  390 (632)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~-~  390 (632)
                      .+.+. +..+..+ ++|++|++++|++++......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .
T Consensus        89 ~i~~l-~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           89 GVITM-SSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SEEEE-EEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccccC-hhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            65532 2223333 6777777777776665442223678899999999999888778888899999999999999987 4


Q ss_pred             cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccc
Q 006752          391 YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  470 (632)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  470 (632)
                      .|.                                                   .+..+++|++|++++|.+++..|..|
T Consensus       167 ~~~---------------------------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          167 LPD---------------------------------------------------IFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             ECS---------------------------------------------------CCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             chh---------------------------------------------------HHhhCcCCCEEECCCCCcCCcCHHHh
Confidence            454                                                   35678899999999999999889999


Q ss_pred             cCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC-CCcceEecCCCcccChHHHHHHHHHc
Q 006752          471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       471 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+ ++|++|++++|++.++|...++.++.
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence            999999999999999999888889999999999999999999999999988 59999999999999988776666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.7e-28  Score=248.94  Aligned_cols=148  Identities=14%  Similarity=0.190  Sum_probs=120.0

Q ss_pred             CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752          116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL  195 (632)
Q Consensus       116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  195 (632)
                      ++++++++++ .++.. +..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus        34 ~l~~l~~~~~-~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSS-CCSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCC-Ccccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            7999999998 55543 2333  378999999999999877788999999999999999999988899999999999999


Q ss_pred             cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECCCCcccc--h-hccccCCCCCcEEEeeCCCCC
Q 006752          196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS--I-LEGNENKAPLAKISLAGTTFI  267 (632)
Q Consensus       196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~~~~l~~--~-~~~~~~~~~L~~L~l~~n~~~  267 (632)
                      ++|.++.. |..+.  ++|++|++++|.++.++     .+++|++|++++|.++.  + +..+..+ +|++|++++|.+.
T Consensus       110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            99999854 33333  89999999999988654     68999999999999973  3 3333344 7777888777776


Q ss_pred             chhh
Q 006752          268 NERE  271 (632)
Q Consensus       268 ~~~~  271 (632)
                      +++.
T Consensus       186 ~l~~  189 (332)
T 2ft3_A          186 GIPK  189 (332)
T ss_dssp             SCCS
T ss_pred             ccCc
Confidence            6543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.6e-28  Score=255.63  Aligned_cols=257  Identities=15%  Similarity=0.201  Sum_probs=200.6

Q ss_pred             CCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccC
Q 006752          233 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSS  310 (632)
Q Consensus       233 L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~  310 (632)
                      ...++.++..++.+|..+.  ++++.|++++|.+..++.. .+..+++|++|++++|.++.+  ..+..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            3455555555555555443  4566666666666655432 345666677777777766665  4566777777788877


Q ss_pred             CCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCC-CCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       311 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      |++++..+..+..+ ++|++|++++|+++...+..+ ..+++|++|++++| .+....+..|..+++|++|++++|+++.
T Consensus       122 n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            77776555555555 778888888888776555444 66888999999884 4555555578889999999999999885


Q ss_pred             ccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc
Q 006752          390 MYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  469 (632)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  469 (632)
                      . |.                                                    +..+++|++|+|++|.+++..+..
T Consensus       200 ~-~~----------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~  226 (440)
T 3zyj_A          200 I-PN----------------------------------------------------LTPLIKLDELDLSGNHLSAIRPGS  226 (440)
T ss_dssp             C-CC----------------------------------------------------CTTCSSCCEEECTTSCCCEECTTT
T ss_pred             c-cc----------------------------------------------------cCCCcccCEEECCCCccCccChhh
Confidence            4 32                                                    456789999999999999988999


Q ss_pred             ccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          470 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       470 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      |..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|+|...++..+.
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~  304 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI  304 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHH
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHH
Confidence            999999999999999999999999999999999999999999998889999999999999999999999887776655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=7.2e-28  Score=255.07  Aligned_cols=256  Identities=18%  Similarity=0.218  Sum_probs=199.0

Q ss_pred             CEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCC
Q 006752          234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS  311 (632)
Q Consensus       234 ~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n  311 (632)
                      ..++.++..++.+|..+.  +++++|++++|.+.++++. .+..+++|++|++++|.++.+  ..+..+++|++|++++|
T Consensus        57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            445555555555554433  4566666666666554332 344666677777777766665  45667777888888887


Q ss_pred             CCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC-CCCChHHHHHHhcCCCccEEEccCCccccc
Q 006752          312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~  390 (632)
                      .+++..+..+..+ ++|++|++++|+++......+ ..+++|++|++++ +.+....+..|..+++|++|++++|++++.
T Consensus       134 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          134 WLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             CCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             cCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            7776555555555 788888888888776555444 6788999999988 455555555688999999999999998875


Q ss_pred             cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccc
Q 006752          391 YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  470 (632)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  470 (632)
                       |.                                                    +..+++|++|+|++|.+++..|..|
T Consensus       212 -~~----------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~  238 (452)
T 3zyi_A          212 -PN----------------------------------------------------LTPLVGLEELEMSGNHFPEIRPGSF  238 (452)
T ss_dssp             -CC----------------------------------------------------CTTCTTCCEEECTTSCCSEECGGGG
T ss_pred             -cc----------------------------------------------------ccccccccEEECcCCcCcccCcccc
Confidence             33                                                    4567899999999999999989999


Q ss_pred             cCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       471 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      ..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|+|...++..+.
T Consensus       239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l  315 (452)
T 3zyi_A          239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWL  315 (452)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHH
T ss_pred             cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHH
Confidence            99999999999999999999999999999999999999999998888999999999999999999999877766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=9.4e-28  Score=245.69  Aligned_cols=261  Identities=19%  Similarity=0.218  Sum_probs=138.4

Q ss_pred             CCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeec
Q 006752          232 SLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL  308 (632)
Q Consensus       232 ~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l  308 (632)
                      +|++|++++|.++.++. .+..+++|++|++++|.+.++++. .+..+++|++|++++|.++..  ..+..+++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            44444444444444333 233444444444444444433221 123344444444444444443  12444444444444


Q ss_pred             cCCCCCchHH-HHHHhcCCCCcEEEccCCc-CcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCc
Q 006752          309 SSSMIGDDSV-EMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD  386 (632)
Q Consensus       309 ~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~  386 (632)
                      ++|.+++... ..+..+ ++|++|++++|. +.+..+..+ +.+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus       132 ~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             TTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            4444443222 122222 445555555442 333322222 344555555555555555444555555555555555555


Q ss_pred             cccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCc
Q 006752          387 IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  466 (632)
Q Consensus       387 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~  466 (632)
                      +... |.                                                  ..+..+++|++|++++|.+++..
T Consensus       210 l~~~-~~--------------------------------------------------~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          210 HILL-LE--------------------------------------------------IFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             STTH-HH--------------------------------------------------HHHHHTTTEEEEEEESCBCTTCC
T ss_pred             cccc-hh--------------------------------------------------hhhhhcccccEEECCCCcccccc
Confidence            4322 21                                                  12344556666666666666544


Q ss_pred             ccccc---CcccccccccccccCCC----cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHH
Q 006752          467 LFPLS---TFKELIHLSLRNASLTD----VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA  539 (632)
Q Consensus       467 ~~~l~---~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~  539 (632)
                      +..+.   ..+.++.++++++.+++    .+|.++..+++|++|++++|+++...+..|..+++|++|++++|++.+++.
T Consensus       239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            33332   24455666666666655    367788999999999999999997655557899999999999999988885


Q ss_pred             -HHHHHHH
Q 006752          540 -ILQFCKM  546 (632)
Q Consensus       540 -~~~~~~~  546 (632)
                       ..++..+
T Consensus       319 ~l~~l~~~  326 (353)
T 2z80_A          319 RIDYLSRW  326 (353)
T ss_dssp             HHHHHHHH
T ss_pred             CcHHHHHH
Confidence             4333333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=2.5e-28  Score=245.08  Aligned_cols=251  Identities=14%  Similarity=0.181  Sum_probs=167.9

Q ss_pred             CCCEEEcCCCCCCh--HHHHhccCCCCccEEEecC-CCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCC
Q 006752          165 NLSVLDLGGLPVTD--LVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNC  241 (632)
Q Consensus       165 ~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~  241 (632)
                      ++++|++++|.+.+  .+|..++++++|++|++++ |.+.+..|..+..+++|++|                   ++++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L-------------------~Ls~n  111 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL-------------------YITHT  111 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE-------------------EEEEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEE-------------------ECcCC
Confidence            45555555555555  4455555555555555553 55544444444444333333                   33333


Q ss_pred             ccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHH
Q 006752          242 TID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM  320 (632)
Q Consensus       242 ~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  320 (632)
                      .+. .+|..+..+++|++|++++|.+.+..+                       ..+..+++|++|++++|.+++..|..
T Consensus       112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-----------------------~~~~~l~~L~~L~L~~N~l~~~~p~~  168 (313)
T 1ogq_A          112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-----------------------PSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSSEEESCCC-----------------------GGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             eeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-----------------------hHHhcCCCCCeEECcCCcccCcCCHH
Confidence            333 334444444555555555554442111                       34566777777777777777666666


Q ss_pred             HHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhh
Q 006752          321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFF  400 (632)
Q Consensus       321 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  400 (632)
                      +....+.|++|++++|++++..+..+ +.++ |++|++++|.+++..+..+..+++|++|++++|.+++.+|.       
T Consensus       169 l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------  239 (313)
T 1ogq_A          169 YGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------  239 (313)
T ss_dssp             GGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------
T ss_pred             HhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-------
Confidence            66662378888888888877666665 4455 88888888888877777888888888888888888765443       


Q ss_pred             hhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccc
Q 006752          401 SAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS  480 (632)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  480 (632)
                                                                   +..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus       240 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          240 ---------------------------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             ---------------------------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             ---------------------------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence                                                         34567888888888888888888888888888899


Q ss_pred             cccccCCCcchhhhccCCCCcEEeecCce-ecc
Q 006752          481 LRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTN  512 (632)
Q Consensus       481 Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~-l~~  512 (632)
                      |++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus       275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            9888888877765 778888888888887 554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.5e-27  Score=236.53  Aligned_cols=236  Identities=16%  Similarity=0.211  Sum_probs=189.0

Q ss_pred             CCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCc-CcchhHHHHHhcCCCCcE
Q 006752          279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEI  355 (632)
Q Consensus       279 ~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~  355 (632)
                      +++++|++++|.++..  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|+ +....+..+ ..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence            4556666666666555  346677777777777777776666666666 788888888886 665545554 66889999


Q ss_pred             EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA  435 (632)
Q Consensus       356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  435 (632)
                      |++++|.+++..+..+..+++|++|++++|++++..+.                                          
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------------------------  147 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------------------------------------------  147 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------------------------
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------------------------------------------
Confidence            99999999887788888999999999999999876444                                          


Q ss_pred             ccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752          436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  515 (632)
Q Consensus       436 ~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  515 (632)
                               .+.++++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..+
T Consensus       148 ---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          148 ---------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             ---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             ---------HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence                     46778999999999999999777789999999999999999999989999999999999999999999877


Q ss_pred             CCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchh
Q 006752          516 GSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL  577 (632)
Q Consensus       516 ~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~  577 (632)
                      ..+..+++|++|++++|++.|++...++.++.....          .+.+.+....|..+..
T Consensus       219 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~----------~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR----------GSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC----------SEECCCBEEESGGGTT
T ss_pred             HHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcc----------cccCccccCCchHhCC
Confidence            789999999999999999999988877766654332          2345556666666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.1e-28  Score=243.48  Aligned_cols=269  Identities=20%  Similarity=0.195  Sum_probs=163.4

Q ss_pred             ccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccC
Q 006752          142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW  221 (632)
Q Consensus       142 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  221 (632)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4445555555554444555566667777777766666666666666777777777766655443  55555555555555


Q ss_pred             CCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCC
Q 006752          222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK  301 (632)
Q Consensus       222 n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~  301 (632)
                      |.+++++..++|++|++++|.+..++..                           .+++|                    
T Consensus        90 n~l~~l~~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L--------------------  122 (317)
T 3o53_A           90 NYVQELLVGPSIETLHAANNNISRVSCS---------------------------RGQGK--------------------  122 (317)
T ss_dssp             SEEEEEEECTTCCEEECCSSCCSEEEEC---------------------------CCSSC--------------------
T ss_pred             CccccccCCCCcCEEECCCCccCCcCcc---------------------------ccCCC--------------------
Confidence            5444444334444444444444332211                           12333                    


Q ss_pred             CCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEE
Q 006752          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  381 (632)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  381 (632)
                        ++|++++|.+++..+..+..+ ++|++|++++|++++..+..+.+.+++|++|++++|.+++..  ....+++|++|+
T Consensus       123 --~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~  197 (317)
T 3o53_A          123 --KNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLD  197 (317)
T ss_dssp             --EEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEE
T ss_pred             --CEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEE
Confidence              333333333333333233333 455555555555555444444345666777777777666542  123477888888


Q ss_pred             ccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccC
Q 006752          382 ISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ  461 (632)
Q Consensus       382 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~  461 (632)
                      +++|++++. |.                                                   .+..+++|++|++++|.
T Consensus       198 Ls~N~l~~l-~~---------------------------------------------------~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          198 LSSNKLAFM-GP---------------------------------------------------EFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             CCSSCCCEE-CG---------------------------------------------------GGGGGTTCSEEECTTSC
T ss_pred             CCCCcCCcc-hh---------------------------------------------------hhcccCcccEEECcCCc
Confidence            888888765 33                                                   25567888899999998


Q ss_pred             CCCCccccccCcccccccccccccCC-CcchhhhccCCCCcEEeecC-ceeccCCCCC
Q 006752          462 VSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSIRD-AVLTNSGLGS  517 (632)
Q Consensus       462 l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ls~-N~l~~~~~~~  517 (632)
                      +++ +|..+..+++|+.|++++|.+. +..|.++..+++|+.+++++ +.+++..+..
T Consensus       226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             CCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             ccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            886 6777888889999999999888 67788888889999999885 4566655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=3.7e-26  Score=228.99  Aligned_cols=246  Identities=22%  Similarity=0.343  Sum_probs=194.7

Q ss_pred             cEEEccCCCCCCCCC--CCCCCEEECCCCcccchhccc-cCCCCCcEEEeeCCCCCchhh-hhhhhcCCCccEEeccCCC
Q 006752          215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINERE-AFLYIETSLLSFLDVSNSS  290 (632)
Q Consensus       215 ~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~ls~n~  290 (632)
                      +.++.+++.++.+|.  .+++++|++++|.++.+|... ..+++|++|++++|.+..... ...+..+++|++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            356666666666552  357888888888888777664 578888888888888875421 1123367888889998888


Q ss_pred             CCch-hhhhcCCCCCeeeccCCCCCchHH-HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCCh-HH
Q 006752          291 LSRF-CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YA  367 (632)
Q Consensus       291 l~~~-~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~  367 (632)
                      +..+ ..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+.+..+..+ +.+++|++|++++|.+++ ..
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEE
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccc
Confidence            8777 457788899999999988876554 345555 889999999998887766555 668899999999998876 46


Q ss_pred             HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhh
Q 006752          368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQ  447 (632)
Q Consensus       368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~  447 (632)
                      |..+..+++|++|++++|++++..|.                                                   .+.
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------------~~~  196 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPT---------------------------------------------------AFN  196 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTT---------------------------------------------------TTT
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHH---------------------------------------------------Hhc
Confidence            77788899999999999999887665                                                   456


Q ss_pred             cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCC-CCcEEeecCceeccC
Q 006752          448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-KLTNLSIRDAVLTNS  513 (632)
Q Consensus       448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~ls~N~l~~~  513 (632)
                      ++++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|+++..
T Consensus       197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            778999999999999987777888899999999999999998888888884 899999999998864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=227.16  Aligned_cols=252  Identities=19%  Similarity=0.162  Sum_probs=156.5

Q ss_pred             CCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccE
Q 006752          113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY  192 (632)
Q Consensus       113 ~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  192 (632)
                      .|+...+.+++++ .++... ..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|+++++|++
T Consensus        29 ~C~~~~~c~~~~~-~l~~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSG-SLNSIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCST-TCSSCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCC-Cccccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4566666777766 454432 222  247777788777777655556777777777777777777766666777777777


Q ss_pred             EEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhc--cccCCCCCcEEEeeCCC-CCch
Q 006752          193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTT-FINE  269 (632)
Q Consensus       193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~l~~n~-~~~~  269 (632)
                      |++++|++++..+..+..+++|++|++++|.++.                   ++.  .+..+++|++|++++|. +..+
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-------------------LGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-------------------SCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-------------------cCchhhhccCCCCcEEECCCCcccccc
Confidence            7777777776666566666666666666655543                   333  33456666666666663 3333


Q ss_pred             hhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHH-
Q 006752          270 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL-  346 (632)
Q Consensus       270 ~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-  346 (632)
                      ++. .+..+++|++|++++|.+++.  ..+..+++|++|++++|.++......+... ++|++|++++|++++..+..+ 
T Consensus       166 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          166 QRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             CTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC---
T ss_pred             CHH-HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCccccccccccc
Confidence            221 344556666666666666555  456667777777777777764333333333 777778887777765432211 


Q ss_pred             -HhcCCCCcEEEccCCCCChH----HHHHHhcCCCccEEEccCCcccc
Q 006752          347 -AGHLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       347 -~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                       ...++.++.++++++.+++.    +|..+..+++|++|++++|+++.
T Consensus       244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence             12355677777777776652    45556667777777777777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.8e-24  Score=234.75  Aligned_cols=264  Identities=20%  Similarity=0.179  Sum_probs=153.6

Q ss_pred             CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-CCCCCCEEECCCCcc
Q 006752          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCTI  243 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~l~~L~~L~L~~~~l  243 (632)
                      +++.|++++|.++. +|..+.  ++|++|++++|.++...+    .+++|++|++++|.++.++ .+++|++|++++|.+
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL  113 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCC
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcC
Confidence            46677777776663 343333  566666666666653222    3455555555555555444 334444555554444


Q ss_pred             cchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHh
Q 006752          244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC  323 (632)
Q Consensus       244 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  323 (632)
                      +.+|.   .                         +++|+.|++++|.++.++.  .+++|++|++++|.+++...     
T Consensus       114 ~~l~~---~-------------------------l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~-----  158 (622)
T 3g06_A          114 THLPA---L-------------------------PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA-----  158 (622)
T ss_dssp             CCCCC---C-------------------------CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----
T ss_pred             CCCCC---C-------------------------CCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC-----
Confidence            44433   2                         3445555555555444422  13556666666665554211     


Q ss_pred             cCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhh
Q 006752          324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY  403 (632)
Q Consensus       324 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  403 (632)
                      ..++|+.|++++|.+++..     ..+++|+.|++++|.+++...    ..++|+.|++++|.++.. |.          
T Consensus       159 ~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l-~~----------  218 (622)
T 3g06_A          159 LPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PA----------  218 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC-CC----------
T ss_pred             ccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc-CC----------
Confidence            1256666666666666533     335667777777776664221    346677777777776643 32          


Q ss_pred             hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccccc
Q 006752          404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN  483 (632)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  483 (632)
                                                                  .+++|++|++++|.+++ +|   ..+++|+.|+|++
T Consensus       219 --------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          219 --------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG  250 (622)
T ss_dssp             --------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred             --------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence                                                        12567777777777776 34   3457777777777


Q ss_pred             ccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHH
Q 006752          484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  544 (632)
Q Consensus       484 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~  544 (632)
                      |+|+.+. .   .+++|+.|++++|+++. +|..+..+++|+.|++++|++ .+..+..+.
T Consensus       251 N~L~~lp-~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l-~~~~~~~l~  305 (622)
T 3g06_A          251 NRLTSLP-M---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL-SERTLQALR  305 (622)
T ss_dssp             SCCSCCC-C---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCC-CHHHHHHHH
T ss_pred             CCCCcCC-c---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCC-CCcCHHHHH
Confidence            7777633 3   56777777777777774 466677777777777777776 555554444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=6.6e-26  Score=228.78  Aligned_cols=233  Identities=16%  Similarity=0.147  Sum_probs=183.9

Q ss_pred             CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeec
Q 006752          230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDL  308 (632)
Q Consensus       230 l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l  308 (632)
                      .+.++.|++++|.+..+|..++.+++|++|++++|.+..+|..  +..+++|++|++++|.++.+ ..+..+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            4678888888888888888888888888888888888766543  34677777777777777755 45667777777777


Q ss_pred             cCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccc
Q 006752          309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  388 (632)
Q Consensus       309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~  388 (632)
                      ++|.+.+..|.       .+....+.+.          ++.+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus       158 ~~n~~~~~~p~-------~~~~~~~~~~----------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          158 RACPELTELPE-------PLASTDASGE----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEETTCCCCCS-------CSEEEC-CCC----------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCccccCh-------hHhhccchhh----------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            77665544432       2222222111          145889999999999888 56677889999999999999988


Q ss_pred             cccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccc
Q 006752          389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF  468 (632)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  468 (632)
                      +. |.                                                   .+..+++|++|++++|.+.+.+|.
T Consensus       220 ~l-~~---------------------------------------------------~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          220 AL-GP---------------------------------------------------AIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             CC-CG---------------------------------------------------GGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             cC-ch---------------------------------------------------hhccCCCCCEEECcCCcchhhhHH
Confidence            64 43                                                   366788999999999999998999


Q ss_pred             cccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          469 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       469 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      .++.+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.+++..+.+
T Consensus       248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            999999999999999999998999999999999999999999999999999999999999998876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=2.1e-25  Score=221.07  Aligned_cols=222  Identities=20%  Similarity=0.272  Sum_probs=136.9

Q ss_pred             EEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCC
Q 006752          235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM  312 (632)
Q Consensus       235 ~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~  312 (632)
                      +++.+++.++.+|..+  .++|++|++++|.+.+++.. .+..+++|++|++++|.++..  ..+..+++|++|++++|.
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            3344444444443322  23444444444444443322 233445555555555555444  345556666666666665


Q ss_pred             -CCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccccc
Q 006752          313 -IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMY  391 (632)
Q Consensus       313 -l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~  391 (632)
                       +.+..+..+..+ ++|++|++++|++++..+..+ +.+++|++|++++|++++..+..++.+++|++|++++|++++..
T Consensus        92 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           92 QLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CccccCHHHhcCC-cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence             554445555554 667777777776666544444 45677777777777777666666677777777777777777653


Q ss_pred             CCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc
Q 006752          392 PSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  471 (632)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  471 (632)
                      +.                                                   .+.++++|++|++++|.+++..|..|.
T Consensus       170 ~~---------------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          170 ER---------------------------------------------------AFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             TT---------------------------------------------------TTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             HH---------------------------------------------------HhcCccccCEEECCCCcccccCHhHcc
Confidence            33                                                   345667777777777777776677777


Q ss_pred             CcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          472 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       472 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      .+++|+.|++++|++++..+..+..+++|++|++++|++..
T Consensus       199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            77777777777777777666677777777777777777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.4e-26  Score=230.20  Aligned_cols=265  Identities=18%  Similarity=0.159  Sum_probs=188.3

Q ss_pred             cCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEec
Q 006752          117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW  196 (632)
Q Consensus       117 L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  196 (632)
                      ++..+++.+ .+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344444444 3333333333345566666666666665555566666666666666666655432  5666666666666


Q ss_pred             CCCCCchhhHhhcCCCCCcEEEccCCCCCCCC--CCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhh
Q 006752          197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAF  273 (632)
Q Consensus       197 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~  273 (632)
                      +|.+++..     ..++|++|++++|.++.++  .+++|++|++++|.++.++. .+..+++|++|++++|.+.+.+...
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            66655422     3366777777777666532  46778888888888887655 5557889999999999998876554


Q ss_pred             hhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCC
Q 006752          274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL  353 (632)
Q Consensus       274 ~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  353 (632)
                      ....+++|++|++++|.++..+....+++|++|++++|.+++..+. +... ++|++|++++|++++. +..+ ..+++|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l-~~L~~L~L~~N~l~~l-~~~~-~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVLI-EKAL-RFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCEE-CTTC-CCCTTC
T ss_pred             HhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hccc-CcccEEECcCCcccch-hhHh-hcCCCC
Confidence            4457899999999999999886666789999999999999876554 6666 8999999999999864 3333 678999


Q ss_pred             cEEEccCCCCC-hHHHHHHhcCCCccEEEccC-CccccccCC
Q 006752          354 EILSLSGTQID-DYAISYMSMMPSLKFIDISN-TDIKGMYPS  393 (632)
Q Consensus       354 ~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~-n~i~~~~~~  393 (632)
                      +.|++++|++. +..+..+..+++|+.+++++ +.+.+..|.
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            99999999998 78888899999999999984 445555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=8.8e-26  Score=227.88  Aligned_cols=232  Identities=16%  Similarity=0.165  Sum_probs=184.9

Q ss_pred             CCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEe
Q 006752          210 MFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD  285 (632)
Q Consensus       210 ~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  285 (632)
                      ..+.++.|++++|.++.++    .+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..  +..+++|++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~--l~~l~~L~~L~  156 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS--IASLNRLRELS  156 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG--GGGCTTCCEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH--HhcCcCCCEEE
Confidence            4588999999999999876    47999999999999999999999999999999999999977664  56899999999


Q ss_pred             ccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCC
Q 006752          286 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI  363 (632)
Q Consensus       286 ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  363 (632)
                      +++|.+.+.  ..+..      ..+.+         .+..+ ++|++|++++|+++ ..+..+ +.+++|++|++++|++
T Consensus       157 L~~n~~~~~~p~~~~~------~~~~~---------~~~~l-~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------TDASG---------EHQGL-VNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEETTCCCCCSCSEE------EC-CC---------CEEES-TTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCC
T ss_pred             CCCCCCccccChhHhh------ccchh---------hhccC-CCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCC
Confidence            999876544  22211      11111         01222 66777777777666 333333 6688888888888888


Q ss_pred             ChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccch
Q 006752          364 DDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL  443 (632)
Q Consensus       364 ~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  443 (632)
                      ++. |..+..+++|++|++++|++.+.+|.                                                  
T Consensus       219 ~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~--------------------------------------------------  247 (328)
T 4fcg_A          219 SAL-GPAIHHLPKLEELDLRGCTALRNYPP--------------------------------------------------  247 (328)
T ss_dssp             CCC-CGGGGGCTTCCEEECTTCTTCCBCCC--------------------------------------------------
T ss_pred             CcC-chhhccCCCCCEEECcCCcchhhhHH--------------------------------------------------
Confidence            753 44588899999999999998888777                                                  


Q ss_pred             HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       444 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                       .+.++++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|+.+++..+.+...
T Consensus       248 -~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          248 -IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             -CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             -HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence             356778999999999999988999999999999999999999999999999999999999988766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=9.5e-25  Score=236.95  Aligned_cols=268  Identities=18%  Similarity=0.188  Sum_probs=153.9

Q ss_pred             CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752          116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL  195 (632)
Q Consensus       116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  195 (632)
                      ++++|++++| .++.. +..+.  ++|++|++++|.++.. |.   .+++|++|++++|.++.. |.   .+++|++|++
T Consensus        41 ~l~~L~ls~n-~L~~l-p~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGES-GLTTL-PDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSS-CCSCC-CSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred             CCcEEEecCC-CcCcc-ChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence            4667777766 44422 22222  5666666666666532 21   345566666666655532 21   4455555555


Q ss_pred             cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhh
Q 006752          196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY  275 (632)
Q Consensus       196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  275 (632)
                      ++|.+++...    .++                   +|+.|++++|.++.+|..   +++|++|++++|.+.+++.    
T Consensus       109 s~N~l~~l~~----~l~-------------------~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----  158 (622)
T 3g06_A          109 FSNPLTHLPA----LPS-------------------GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----  158 (622)
T ss_dssp             CSCCCCCCCC----CCT-------------------TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----
T ss_pred             cCCcCCCCCC----CCC-------------------CcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----
Confidence            5555544221    334                   445555555554444432   2455555555555554432    


Q ss_pred             hcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcE
Q 006752          276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI  355 (632)
Q Consensus       276 ~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  355 (632)
                       ..++|+.|++++|.++.++  ..+++|+.|++++|.+++...     ..++|+.|++++|.++...     ..+++|++
T Consensus       159 -~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~-----~~~~~L~~  225 (622)
T 3g06_A          159 -LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-----ALPSGLKE  225 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC-----CCCTTCCE
T ss_pred             -ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC-----CCCCCCCE
Confidence             2345555555555555544  334566666666666654211     1256777777777666432     23467777


Q ss_pred             EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA  435 (632)
Q Consensus       356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  435 (632)
                      |++++|++++..    ..+++|+.|++++|.+++. |.                                          
T Consensus       226 L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~l-p~------------------------------------------  258 (622)
T 3g06_A          226 LIVSGNRLTSLP----VLPSELKELMVSGNRLTSL-PM------------------------------------------  258 (622)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC------------------------------------------
T ss_pred             EEccCCccCcCC----CCCCcCcEEECCCCCCCcC-Cc------------------------------------------
Confidence            777777776532    4567777777777777653 32                                          


Q ss_pred             ccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCC
Q 006752          436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS  498 (632)
Q Consensus       436 ~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  498 (632)
                                  .+++|++|+|++|+++. +|..+..+++|+.|+|++|.+++..|..+..++
T Consensus       259 ------------~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          259 ------------LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ------------CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             ------------ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence                        23567788888887774 567777778888888888888877777666544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=228.85  Aligned_cols=243  Identities=18%  Similarity=0.223  Sum_probs=186.0

Q ss_pred             CcEEEccCCCCCCCCC--CCCCCEEECCCCcccchh-ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752          214 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (632)
Q Consensus       214 L~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~  290 (632)
                      .+.++..+..++.+|.  .++++.|++++|.+..++ ..+..+++|++|++++|.+..++.. .+..+++|++|++++|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNR  123 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCCc
Confidence            3455666666666552  356777888887777655 4555778888888888887776543 45677888888888888


Q ss_pred             CCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752          291 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  368 (632)
Q Consensus       291 l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (632)
                      ++.+  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|...+..+...+..+++|++|++++|+++... 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence            8777  357788888888888888887666566666 888888888854333333322367888999999999887542 


Q ss_pred             HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhc
Q 006752          369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQN  448 (632)
Q Consensus       369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~  448 (632)
                       .+..+++|+.|++++|++++..|.                                                   .|.+
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~~  229 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPG---------------------------------------------------SFQG  229 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTT---------------------------------------------------TTTT
T ss_pred             -ccCCCcccCEEECCCCccCccChh---------------------------------------------------hhcc
Confidence             377888999999999998887665                                                   4677


Q ss_pred             CCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          449 LNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       449 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      +++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            889999999999999888888888999999999999999888888888999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=3e-26  Score=229.97  Aligned_cols=246  Identities=19%  Similarity=0.127  Sum_probs=164.0

Q ss_pred             CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch--hhh-----hhhhcCCCccEEeccCCCCCch--hhh--hc
Q 006752          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE--REA-----FLYIETSLLSFLDVSNSSLSRF--CFL--TQ  299 (632)
Q Consensus       231 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~-----~~~~~~~~L~~L~ls~n~l~~~--~~l--~~  299 (632)
                      ++|++|++++|.+ .+|..+...  |+.|++++|.+...  +..     ..+..+++|++|++++|.+++.  ..+  ..
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            3455555555555 444443322  55555555555331  111     1122466777777777776643  222  67


Q ss_pred             CCCCCeeeccCCCCCchHHHHHHhc----CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH--HHHHH--
Q 006752          300 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISYM--  371 (632)
Q Consensus       300 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l--  371 (632)
                      +++|++|++++|.+++. |..+..+    .++|++|++++|++++..+..+ +.+++|++|++++|++.+.  .+..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            77888888888887765 4444443    2678888888888877666555 5688888888888887765  23344  


Q ss_pred             hcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCc
Q 006752          372 SMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNH  451 (632)
Q Consensus       372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~  451 (632)
                      ..+++|++|++++|++++......                                                ..+.++++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~------------------------------------------------~~~~~l~~  229 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCS------------------------------------------------ALAAARVQ  229 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHH------------------------------------------------HHHHTTCC
T ss_pred             ccCCCCCEEECCCCcCcchHHHHH------------------------------------------------HHHhcCCC
Confidence            678888888888888774311000                                                23456788


Q ss_pred             ccccccCccCCCCCcc-ccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752          452 LERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  530 (632)
Q Consensus       452 L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~  530 (632)
                      |++|++++|.+++..| ..+..+++|++|+|++|+++. +|..+.  ++|++|++++|++++. |. +..+++|++|+++
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK  304 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence            8888888888888664 445567888888888888885 555554  7888888888888886 55 7788888888888


Q ss_pred             CCcc
Q 006752          531 GGWL  534 (632)
Q Consensus       531 ~N~l  534 (632)
                      +|++
T Consensus       305 ~N~l  308 (312)
T 1wwl_A          305 GNPF  308 (312)
T ss_dssp             TCTT
T ss_pred             CCCC
Confidence            8887

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.6e-24  Score=229.44  Aligned_cols=243  Identities=19%  Similarity=0.201  Sum_probs=171.2

Q ss_pred             cEEEccCCCCCCCCC--CCCCCEEECCCCcccchh-ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCC
Q 006752          215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (632)
Q Consensus       215 ~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l  291 (632)
                      ..++.++..++.+|.  .+++++|++++|.+..++ ..+..+++|++|++++|.+.++++. .+..+++|++|++++|.+
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCC
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcC
Confidence            445555555555542  256777777777776553 4455677777777777777665433 345677777777777777


Q ss_pred             Cch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHH
Q 006752          292 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  369 (632)
Q Consensus       292 ~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  369 (632)
                      +.+  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|...+..+...+..+++|++|++++|++++..  
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--  212 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--  212 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence            766  346677777888888777776555555555 778888887754333333222356788888888888877542  


Q ss_pred             HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752          370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL  449 (632)
Q Consensus       370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l  449 (632)
                      .+..+++|+.|++++|.+++..|.                                                   .|.++
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~~l  241 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPG---------------------------------------------------SFHGL  241 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGG---------------------------------------------------GGTTC
T ss_pred             cccccccccEEECcCCcCcccCcc---------------------------------------------------cccCc
Confidence            366788888888888888876555                                                   46677


Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      ++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.-
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            888888888888888778888888888888888888888777778888888888888887653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5.8e-25  Score=233.96  Aligned_cols=227  Identities=18%  Similarity=0.200  Sum_probs=184.9

Q ss_pred             CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  331 (632)
Q Consensus       252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  331 (632)
                      .+++|++|++++|.+.++++. .+..+++|++|++++|.+++...+..+++|++|++++|.+++..+     . ++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~-~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----G-PSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----C-TTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----C-CCcCEE
Confidence            344788888888887776543 456778888888888888777558888899999999988876442     2 789999


Q ss_pred             EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhc
Q 006752          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL  411 (632)
Q Consensus       332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~  411 (632)
                      ++++|.+++..+    ..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..+                
T Consensus       105 ~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----------------  164 (487)
T 3oja_A          105 HAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------  164 (487)
T ss_dssp             ECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----------------
T ss_pred             ECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----------------
Confidence            999999887655    347899999999999999888888999999999999999998766632                


Q ss_pred             eeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch
Q 006752          412 FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL  491 (632)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  491 (632)
                                                        ...+++|++|+|++|.+++..  .+..+++|+.|+|++|.+++.+|
T Consensus       165 ----------------------------------~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          165 ----------------------------------AASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             ----------------------------------GGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG
T ss_pred             ----------------------------------hhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH
Confidence                                              236789999999999999863  23468999999999999999655


Q ss_pred             hhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHH
Q 006752          492 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF  543 (632)
Q Consensus       492 ~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~  543 (632)
                       .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.|++.+..+
T Consensus       209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence             48899999999999999998 477788899999999999998766655433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=4.3e-26  Score=228.87  Aligned_cols=253  Identities=19%  Similarity=0.192  Sum_probs=161.2

Q ss_pred             ccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc-------CCCCC
Q 006752          184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-------NKAPL  256 (632)
Q Consensus       184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~-------~~~~L  256 (632)
                      ++..++|++|++++|.+  .+|..+...  |+.|++++|.+...                 .++..+.       .+++|
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~-----------------~~~~~~~~~~~~~~~l~~L   97 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA-----------------RIPSRILFGALRVLGISGL   97 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE-----------------ECBHHHHHHHHHHHTTSCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC-----------------CcCHHHHHHHHHhcCcCCc
Confidence            34456677777777777  344444332  55555555544321                 1222221       34444


Q ss_pred             cEEEeeCCCCCch-hhhhhhhcCCCccEEeccCCCCCch-hhhhcC-----CCCCeeeccCCCCCchHHHHHHhcCCCCc
Q 006752          257 AKISLAGTTFINE-REAFLYIETSLLSFLDVSNSSLSRF-CFLTQM-----KALEHLDLSSSMIGDDSVEMVACVGANLR  329 (632)
Q Consensus       257 ~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~-----~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  329 (632)
                      ++|++++|.+.+. +..+.+..+++|++|++++|.+++. ..+..+     ++|++|++++|++++..+..+..+ ++|+
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~  176 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALS  176 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSCC
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC-CCCC
Confidence            4444444444432 2111113444555555555544443 222222     667777777777766555555555 6777


Q ss_pred             EEEccCCcCcchh--HHHH-HhcCCCCcEEEccCCCCCh---HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhh
Q 006752          330 NLNLSNTRFSSAG--VGIL-AGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY  403 (632)
Q Consensus       330 ~L~l~~n~l~~~~--~~~~-~~~~~~L~~L~L~~n~l~~---~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  403 (632)
                      +|++++|++.+..  +..+ ++.+++|++|++++|++++   .....+..+++|++|++++|++++..|..         
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------  247 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP---------  247 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS---------
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh---------
Confidence            7777777766542  2221 2567889999999998883   33344568899999999999998876542         


Q ss_pred             hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccccc
Q 006752          404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN  483 (632)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  483 (632)
                                                               .+..+++|++|++++|.++. +|..+.  ++|++|+|++
T Consensus       248 -----------------------------------------~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~  283 (312)
T 1wwl_A          248 -----------------------------------------SCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSY  283 (312)
T ss_dssp             -----------------------------------------CCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCS
T ss_pred             -----------------------------------------hhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCC
Confidence                                                     24456899999999999984 677665  8999999999


Q ss_pred             ccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       484 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      |++++. |. +..+++|++|++++|++++.
T Consensus       284 N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          284 NRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            999986 55 88999999999999998863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.1e-25  Score=239.67  Aligned_cols=235  Identities=20%  Similarity=0.252  Sum_probs=131.5

Q ss_pred             CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCccc
Q 006752          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID  244 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~  244 (632)
                      +|++|++++|.+.+..|..|+.+++|++|++++|.+++..+  +..+++                   |++|++++|.++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-------------------L~~L~Ls~N~l~   93 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST-------------------LRTLDLNNNYVQ   93 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTT-------------------CCEEECCSSEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCC-------------------CCEEEecCCcCC
Confidence            56666666666555555555556666666666665554433  444444                   444444444444


Q ss_pred             chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhc
Q 006752          245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV  324 (632)
Q Consensus       245 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  324 (632)
                      +++..    ++|++|++++|.+.+++..    .+                      ++|++|++++|.+++..+..+..+
T Consensus        94 ~l~~~----~~L~~L~L~~N~l~~~~~~----~l----------------------~~L~~L~L~~N~l~~~~~~~~~~l  143 (487)
T 3oja_A           94 ELLVG----PSIETLHAANNNISRVSCS----RG----------------------QGKKNIYLANNKITMLRDLDEGCR  143 (487)
T ss_dssp             EEEEC----TTCCEEECCSSCCCCEEEC----CC----------------------SSCEEEECCSSCCCSGGGBCGGGG
T ss_pred             CCCCC----CCcCEEECcCCcCCCCCcc----cc----------------------CCCCEEECCCCCCCCCCchhhcCC
Confidence            33321    3444444444444433221    12                      334444444444444333333333


Q ss_pred             CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752          325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC  404 (632)
Q Consensus       325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  404 (632)
                       ++|++|++++|.+++..+..+.+.+++|++|++++|.+++..+  ...+++|++|++++|.+++..|.           
T Consensus       144 -~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-----------  209 (487)
T 3oja_A          144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-----------  209 (487)
T ss_dssp             -SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-----------
T ss_pred             -CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-----------
Confidence             5555555555555554444443345666666666666655422  23466777777777777764222           


Q ss_pred             hhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccc
Q 006752          405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA  484 (632)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  484 (632)
                                                               +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|
T Consensus       210 -----------------------------------------~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          210 -----------------------------------------FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             -----------------------------------------GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             -----------------------------------------HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence                                                     4456677777777777776 5666777777777777777


Q ss_pred             cCC-CcchhhhccCCCCcEEeec
Q 006752          485 SLT-DVSLHQLSSLSKLTNLSIR  506 (632)
Q Consensus       485 ~l~-~~~~~~~~~l~~L~~L~ls  506 (632)
                      .+. +..|.++..++.|+.++++
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCcchHHHHHhCCCCcEEecc
Confidence            777 5566677777777777775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.1e-24  Score=214.70  Aligned_cols=206  Identities=20%  Similarity=0.232  Sum_probs=157.0

Q ss_pred             CccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  357 (632)
                      ++++|++++|.++..  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ ..+++|++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF-SGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence            455555555555544  245566667777777766665555555555 677777777777776655544 5678888888


Q ss_pred             ccCCCCChHHHHHHhcCCCccEEEccCCccccc-cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM-YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      +++|.+++..+..++.+++|++|++++|.+++. +|.                                           
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-------------------------------------------  143 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------------------------------------------  143 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------------------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCch-------------------------------------------
Confidence            888888776665678888999999999988764 244                                           


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCccccc----ccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                              .+.++++|++|++++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|+.|++++|++++
T Consensus       144 --------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          144 --------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS  214 (276)
T ss_dssp             --------GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred             --------hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence                    567788999999999999987777888888777    8899999999876655554 589999999999999


Q ss_pred             CCCCCCCCCCCcceEecCCCcccChHH
Q 006752          513 SGLGSFKPPRSLKLLDLHGGWLLTEDA  539 (632)
Q Consensus       513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~  539 (632)
                      ..+..|..+++|+.|++++|++.|+|.
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            877788899999999999999988874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=6.2e-24  Score=208.47  Aligned_cols=205  Identities=20%  Similarity=0.279  Sum_probs=163.4

Q ss_pred             ccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC
Q 006752          281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG  360 (632)
Q Consensus       281 L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~  360 (632)
                      .+.++++++.++.++. .-.+++++|++++|.+++..+..+..+ ++|++|++++|+++......+ ..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTT-SSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhh-cCCCCCCEEECCC
Confidence            4555555555555421 112456677777766665554455555 677777777777765544433 5688899999999


Q ss_pred             CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccc
Q 006752          361 TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV  440 (632)
Q Consensus       361 n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  440 (632)
                      |++++..+..+..+++|++|++++|.+++..+.                                               
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------------------------------  127 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-----------------------------------------------  127 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT-----------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHH-----------------------------------------------
Confidence            988877777788899999999999999887554                                               


Q ss_pred             cchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCC
Q 006752          441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP  520 (632)
Q Consensus       441 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~  520 (632)
                          .|.++++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus       128 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          128 ----VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ----HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence                4677899999999999999977777899999999999999999988888999999999999999999988888999


Q ss_pred             CCCcceEecCCCcccChHH
Q 006752          521 PRSLKLLDLHGGWLLTEDA  539 (632)
Q Consensus       521 ~~~L~~L~l~~N~l~~~~~  539 (632)
                      +++|+.|++++|++.|+|.
T Consensus       204 l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTCCEEECCSSCBCCSSS
T ss_pred             ccCCCEEEecCCCeeCCCc
Confidence            9999999999999988774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.1e-23  Score=208.45  Aligned_cols=213  Identities=24%  Similarity=0.260  Sum_probs=167.0

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .++++++++++++.++.++.- -.++++.|++++|.+++..+..+..+ ++|++|++++|.+++....   +.+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCEE
Confidence            344555555555555544211 12566777777777766655556555 7777777777777664432   468889999


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      ++++|+++. +|..+..+++|++|++++|++++..+.                                           
T Consensus        83 ~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~-------------------------------------------  118 (290)
T 1p9a_G           83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG-------------------------------------------  118 (290)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSS-------------------------------------------
T ss_pred             ECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHH-------------------------------------------
Confidence            999998873 455678899999999999999987555                                           


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  516 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  516 (632)
                              .|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++.. |.
T Consensus       119 --------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~  189 (290)
T 1p9a_G          119 --------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK  189 (290)
T ss_dssp             --------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred             --------HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Ch
Confidence                    467889999999999999998888889999999999999999998888889999999999999999964 77


Q ss_pred             CCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          517 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       517 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      .+....+|+.+++++|++.|+|.+.++.++.
T Consensus       190 ~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl  220 (290)
T 1p9a_G          190 GFFGSHLLPFAFLHGNPWLCNCEILYFRRWL  220 (290)
T ss_dssp             TTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred             hhcccccCCeEEeCCCCccCcCccHHHHHHH
Confidence            7777889999999999999999776666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.1e-24  Score=213.93  Aligned_cols=230  Identities=17%  Similarity=0.190  Sum_probs=187.6

Q ss_pred             CCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEc
Q 006752          279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL  358 (632)
Q Consensus       279 ~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L  358 (632)
                      ..+..+++.++.+........+++|+.|++++|.+.+..  .+..+ ++|++|++++|.+++..  .+ +.+++|++|++
T Consensus        19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~L   92 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVRYLALGGNKLHDIS--AL-KELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCCEEECTTSCCCCCG--GG-TTCTTCCEEEC
T ss_pred             HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCcEEECCCCCCCCch--hh-cCCCCCCEEEC
Confidence            445556667777766666677788888888888776432  34444 88888888888887742  23 67899999999


Q ss_pred             cCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccc
Q 006752          359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETD  438 (632)
Q Consensus       359 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  438 (632)
                      ++|.+++..+..+..+++|++|++++|++++..+.                                             
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------------------------  127 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG---------------------------------------------  127 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT---------------------------------------------
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHH---------------------------------------------
Confidence            99999988777788999999999999999876554                                             


Q ss_pred             cccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCC
Q 006752          439 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF  518 (632)
Q Consensus       439 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  518 (632)
                            .+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus       128 ------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          128 ------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                  46778999999999999999877788999999999999999999888889999999999999999999888889


Q ss_pred             CCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhh
Q 006752          519 KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL  581 (632)
Q Consensus       519 ~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~  581 (632)
                      ..+++|++|++++|++.+.+.         .       ....+.+.|.++|.+|..++.+...
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~~---------~-------l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTCP---------G-------IRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCTT---------T-------THHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             hCCcCCCEEEccCCCccccCc---------H-------HHHHHHHHHhCCCcccCcccccCCC
Confidence            999999999999999866432         1       2333455678899999999888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.1e-23  Score=218.35  Aligned_cols=256  Identities=17%  Similarity=0.205  Sum_probs=162.5

Q ss_pred             chhccccCCCCCcEEEeeCCCCCchhhhh---hhhcCCCccEEeccCCCCCch------------hhhhcCCCCCeeecc
Q 006752          245 SILEGNENKAPLAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSRF------------CFLTQMKALEHLDLS  309 (632)
Q Consensus       245 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~ls~n~l~~~------------~~l~~~~~L~~L~l~  309 (632)
                      .++..+..+++|++|++++|.+.......   .+..+++|++|++++|.+..+            ..+..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34444445555555555555554432211   133455666666666543311            234567788888888


Q ss_pred             CCCCCc----hHHHHHHhcCCCCcEEEccCCcCcchhHHHHHh---cC---------CCCcEEEccCCCCCh-HHH---H
Q 006752          310 SSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDD-YAI---S  369 (632)
Q Consensus       310 ~n~l~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~---------~~L~~L~L~~n~l~~-~~~---~  369 (632)
                      +|.+++    ..+..+..+ ++|++|++++|.+++..+..+..   .+         ++|++|++++|++++ ..+   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            888776    355556555 78888888888876655444322   22         788888888888873 333   3


Q ss_pred             HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchH-Hhhc
Q 006752          370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT-ALQN  448 (632)
Q Consensus       370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~l~~  448 (632)
                      .+..+++|++|++++|+++......+                                               .+ .+..
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l-----------------------------------------------~~~~l~~  214 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHL-----------------------------------------------LLEGLAY  214 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHH-----------------------------------------------HHTTGGG
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHH-----------------------------------------------HHHHhhc
Confidence            56678888888888887763200000                                               01 4567


Q ss_pred             CCcccccccCccCCC----CCccccccCcccccccccccccCCCc----chhhhcc--CCCCcEEeecCceecc----CC
Q 006752          449 LNHLERLNLEQTQVS----DATLFPLSTFKELIHLSLRNASLTDV----SLHQLSS--LSKLTNLSIRDAVLTN----SG  514 (632)
Q Consensus       449 l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~ls~N~l~~----~~  514 (632)
                      +++|++|+|++|.++    ..+|..+..+++|++|+|++|.+++.    ++..+..  +++|+.|++++|++++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            788888888888886    44666777788888888888888876    3455533  7888888888888887    35


Q ss_pred             CCCC-CCCCCcceEecCCCcccChHH-HHHHHHHcC
Q 006752          515 LGSF-KPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP  548 (632)
Q Consensus       515 ~~~l-~~~~~L~~L~l~~N~l~~~~~-~~~~~~~~~  548 (632)
                      |..+ .++++|++|++++|++..... ...+...++
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  330 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS  330 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred             HHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence            6555 457888888888888743332 344444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1e-22  Score=211.01  Aligned_cols=252  Identities=17%  Similarity=0.111  Sum_probs=152.1

Q ss_pred             HHhccCCCccEEEcCCCCCCCchhHHh----hhCCCCcCEEeccCC--CCCChhhHhh-------hcCCCCccEEEccCC
Q 006752           84 AYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRC--VKVTDAGMKH-------LLSISTLEKLWLSET  150 (632)
Q Consensus        84 ~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~--~~l~~~~~~~-------l~~l~~L~~L~L~~n  150 (632)
                      ..+..+++|++|+|++|. ++...+..    +.++++|++|+|++|  ..+++..+..       +..+++|++|+|++|
T Consensus        26 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             HHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            445667778888888776 66665544    446778888888776  1222222222       356777788888877


Q ss_pred             CCCH----hHHHHhcCCCCCCEEEcCCCCCChHHHHhcc----CC---------CCccEEEecCCCCCc-hhh---Hhhc
Q 006752          151 GLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ----VL---------TKLEYLDLWGSQVSN-RGA---AVLK  209 (632)
Q Consensus       151 ~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~~-~~~---~~l~  209 (632)
                      .++.    ..+..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|.+++ ..+   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            7776    4556677777888888888777655444433    23         777777777777763 233   3455


Q ss_pred             CCCCCcEEEccCCCCC----------CCCCCCCCCEEECCCCccc-----chhccccCCCCCcEEEeeCCCCCchhhhhh
Q 006752          210 MFPRLSFLNLAWTGVT----------KLPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFL  274 (632)
Q Consensus       210 ~l~~L~~L~l~~n~l~----------~l~~l~~L~~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  274 (632)
                      .+++|++|++++|.++          .+..+++|++|++++|.++     .++..+.                       
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-----------------------  241 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-----------------------  241 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-----------------------
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-----------------------
Confidence            5666666666666554          2333444444444444442     2333333                       


Q ss_pred             hhcCCCccEEeccCCCCCch------hhhh--cCCCCCeeeccCCCCCc----hHHHHHHhcCCCCcEEEccCCcCcchh
Q 006752          275 YIETSLLSFLDVSNSSLSRF------CFLT--QMKALEHLDLSSSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAG  342 (632)
Q Consensus       275 ~~~~~~L~~L~ls~n~l~~~------~~l~--~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~  342 (632)
                        .+++|++|++++|.++..      ..+.  .+++|++|++++|.+++    ..+..+...+++|++|++++|++++..
T Consensus       242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              455555555555555443      2332  26778888888888876    355555333378888888888887766


Q ss_pred             H--HHHHhcCCCCcEEEccCC
Q 006752          343 V--GILAGHLPNLEILSLSGT  361 (632)
Q Consensus       343 ~--~~~~~~~~~L~~L~L~~n  361 (632)
                      +  ..+...+++++.+++...
T Consensus       320 ~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          320 DVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHHHHHHHHTCCEECCC
T ss_pred             hHHHHHHHHhhhcCcchhhhc
Confidence            3  455455555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.7e-22  Score=205.15  Aligned_cols=256  Identities=20%  Similarity=0.230  Sum_probs=161.5

Q ss_pred             CCccEEEecCCCCCchhhHhhcCC--CCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCC
Q 006752          188 TKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT  265 (632)
Q Consensus       188 ~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~  265 (632)
                      ..++.++++++.+.   +..+..+  ++++.+++++                   |.+.+.+..++.+++|++|++++|.
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~-------------------n~l~~~~~~~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPR-------------------SFMDQPLAEHFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTT-------------------CEECSCCCSCCCCBCCCEEECTTCE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCC-------------------ccccccchhhccCCCCCEEEccCCC
Confidence            34778888887766   3334443  4555555554                   4444444444555666666666666


Q ss_pred             CCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCC-CCCch-HHHHHHhcCCCCcEEEccCC-cCcc
Q 006752          266 FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDD-SVEMVACVGANLRNLNLSNT-RFSS  340 (632)
Q Consensus       266 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~~L~~L~l~~n-~l~~  340 (632)
                      +.+......+..+++|++|++++|.+++.  ..+..+++|++|++++| .+++. .+..+..+ ++|++|++++| .+++
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTE  183 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCH
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcCh
Confidence            54432222344566677777766666543  45666778888888887 57664 33334444 78888888888 7776


Q ss_pred             hhHHHHHhcCC-CCcEEEccCC--CCC-hHHHHHHhcCCCccEEEccCCc-cccccCCCccchhhhhhhhhhhhhceecc
Q 006752          341 AGVGILAGHLP-NLEILSLSGT--QID-DYAISYMSMMPSLKFIDISNTD-IKGMYPSGQMNVFFSAYCFMIVYNLFLHA  415 (632)
Q Consensus       341 ~~~~~~~~~~~-~L~~L~L~~n--~l~-~~~~~~l~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (632)
                      ......+..++ +|++|++++|  .++ +..+..+..+++|++|++++|. +++..+.                      
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----------------------  241 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----------------------  241 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----------------------
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH----------------------
Confidence            54444446778 8888888887  565 4456666778888888888887 5544333                      


Q ss_pred             ccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc-CCCCCccccccCcccccccccccccCCCcchhhh
Q 006752          416 YGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL  494 (632)
Q Consensus       416 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  494 (632)
                                                   .+..+++|++|++++| .++......++.+++|+.|++++| ++......+
T Consensus       242 -----------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l  291 (336)
T 2ast_B          242 -----------------------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL  291 (336)
T ss_dssp             -----------------------------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred             -----------------------------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence                                         3566678888888887 444433345677888888888888 444322222


Q ss_pred             ccCCCCcEEeecCceeccCCCCCCCC
Q 006752          495 SSLSKLTNLSIRDAVLTNSGLGSFKP  520 (632)
Q Consensus       495 ~~l~~L~~L~ls~N~l~~~~~~~l~~  520 (632)
                      .  .+|+.|++++|++++..|..+..
T Consensus       292 ~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          292 K--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             H--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             H--hhCcceEEecccCccccCCcccc
Confidence            2  23666668888888877776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=5.7e-23  Score=210.70  Aligned_cols=255  Identities=16%  Similarity=0.176  Sum_probs=181.1

Q ss_pred             EEECCCCcccch-hccccCCCCCcEEEeeCCCCCchhhh---hhhhcCC-CccEEeccCCCCCch--hhhhcC-----CC
Q 006752          235 CLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREA---FLYIETS-LLSFLDVSNSSLSRF--CFLTQM-----KA  302 (632)
Q Consensus       235 ~L~L~~~~l~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~-~L~~L~ls~n~l~~~--~~l~~~-----~~  302 (632)
                      .++++.|.+++. |..+...++|++|++++|.+.+.+..   ..+..++ +|++|++++|.++..  ..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            356677777743 33334455588888888887765431   2344566 788888888888764  334433     88


Q ss_pred             CCeeeccCCCCCchHHHHHHhc----CCCCcEEEccCCcCcchhHHHHHhc----CCCCcEEEccCCCCChH----HHHH
Q 006752          303 LEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGH----LPNLEILSLSGTQIDDY----AISY  370 (632)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~----~~~~  370 (632)
                      |++|++++|.+++..+..+...    .++|++|++++|++++..+..+...    +++|++|++++|.+++.    .+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999998887776655443    1689999999999888776655332    46899999999988853    3444


Q ss_pred             HhcCC-CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752          371 MSMMP-SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL  449 (632)
Q Consensus       371 l~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l  449 (632)
                      +...+ +|++|++++|++++..+..+.                                               ..+..+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------------------------------~~l~~~  194 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELA-----------------------------------------------KFLASI  194 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHH-----------------------------------------------HHHHTS
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHH-----------------------------------------------HHHHhC
Confidence            55565 899999999988876554221                                               145556


Q ss_pred             -CcccccccCccCCCCCccc----cccC-cccccccccccccCCCcchh----hhccCCCCcEEeecCceeccCC-----
Q 006752          450 -NHLERLNLEQTQVSDATLF----PLST-FKELIHLSLRNASLTDVSLH----QLSSLSKLTNLSIRDAVLTNSG-----  514 (632)
Q Consensus       450 -~~L~~L~Ls~n~l~~~~~~----~l~~-l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~ls~N~l~~~~-----  514 (632)
                       ++|++|+|++|.+++....    .+.. .++|++|+|++|.+++..+.    .+..+++|++|++++|.+.+..     
T Consensus       195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~  274 (362)
T 3goz_A          195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK  274 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred             CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence             4899999999998875333    3444 35899999999999886653    3466789999999999855443     


Q ss_pred             --CCCCCCCCCcceEecCCCcccC
Q 006752          515 --LGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       515 --~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                        +..+..+++|+.||+++|++..
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHhccCCceEEEecCCCcCCC
Confidence              3467778899999999999733

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.2e-22  Score=206.22  Aligned_cols=235  Identities=19%  Similarity=0.222  Sum_probs=143.6

Q ss_pred             CCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCch-HHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          279 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       279 ~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      +.++.+++++|.+.+. ..+..+++|++|++++|.+++. .+..+..+ ++|++|++++|.+++..+..+ +.+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence            4555555555555444 3344566666666766666654 34444444 667777777776666656555 446677777


Q ss_pred             EccCC-CCChH-HHHHHhcCCCccEEEccCC-ccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752          357 SLSGT-QIDDY-AISYMSMMPSLKFIDISNT-DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV  433 (632)
Q Consensus       357 ~L~~n-~l~~~-~~~~l~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  433 (632)
                      ++++| .+++. .+..+..+++|++|++++| .+++....                                        
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----------------------------------------  187 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ----------------------------------------  187 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH----------------------------------------
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH----------------------------------------
Confidence            77776 56653 4445666677777777766 55542100                                        


Q ss_pred             ccccccccchHHhhcCC-cccccccCcc--CCC-CCccccccCccccccccccccc-CCCcchhhhccCCCCcEEeecCc
Q 006752          434 GAETDLVLSLTALQNLN-HLERLNLEQT--QVS-DATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA  508 (632)
Q Consensus       434 ~~~~~~l~~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ls~N  508 (632)
                                ..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       188 ----------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          188 ----------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             ----------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ----------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence                      1355566 6777777776  444 3344455566777777777776 56556666777777777777777


Q ss_pred             e-eccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchh
Q 006752          509 V-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL  577 (632)
Q Consensus       509 ~-l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~  577 (632)
                      . ++......+..+++|+.|++++|  ++...+..+.+..+.++          ++.|+++|..|..++.
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~----------l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ----------INCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE----------ESCCCSCCTTCSSCSS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE----------EecccCccccCCcccc
Confidence            3 33322234666777788888777  35555556666666554          4577788888887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=6.8e-23  Score=201.89  Aligned_cols=223  Identities=17%  Similarity=0.207  Sum_probs=164.3

Q ss_pred             EECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCC
Q 006752          236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMI  313 (632)
Q Consensus       236 L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l  313 (632)
                      .+..+..+..+|..+.  ++|++|++++|.+.+++.. .+..+++|++|++++|.++..  ..+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            3444444445554432  3566666666666555432 344566777777777777665  3567778888888888888


Q ss_pred             CchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH-HHHHHhcCCCccEEEccCCccccccC
Q 006752          314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGMYP  392 (632)
Q Consensus       314 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~i~~~~~  392 (632)
                      ++..+..+..+ ++|++|++++|.+.+..+..+ +.+++|++|++++|.+++. .|..+..+++|++|++++|++++..+
T Consensus        89 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           89 QSLALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CEECTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CccChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            77666666666 888888888888876554343 6789999999999998874 47789999999999999999998755


Q ss_pred             CCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc-ccccCccCCCCCcccccc
Q 006752          393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLS  471 (632)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~  471 (632)
                      ..+                                                ..+..++.|. +|++++|.+++..+..+.
T Consensus       167 ~~~------------------------------------------------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~  198 (276)
T 2z62_A          167 TDL------------------------------------------------RVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (276)
T ss_dssp             GGG------------------------------------------------HHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred             HHh------------------------------------------------hhhhhccccceeeecCCCcccccCccccC
Confidence            422                                                2334444444 899999999986665554


Q ss_pred             CcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          472 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       472 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                       ..+|+.|++++|++++..+..|..+++|+.|++++|+++.
T Consensus       199 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          199 -EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             -SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             -CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence             4589999999999999888888999999999999999885

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=5.9e-23  Score=201.63  Aligned_cols=195  Identities=16%  Similarity=0.226  Sum_probs=103.6

Q ss_pred             CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (632)
Q Consensus       278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  357 (632)
                      +++|+.|++++|.+...+.+..+++|++|++++|.+++.  ..+..+ ++|++|++++|.+++..+..+ +.+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEEE
Confidence            444555555555555444455555555555555555442  123333 555555555555554433332 3455566666


Q ss_pred             ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET  437 (632)
Q Consensus       358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  437 (632)
                      +++|++++..+..+..+++|++|++++|.+++..+.                                            
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------------  151 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG--------------------------------------------  151 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------------------------
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH--------------------------------------------
Confidence            655555555444455555666666666655544332                                            


Q ss_pred             ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCC
Q 006752          438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS  517 (632)
Q Consensus       438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  517 (632)
                             .+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++.+.    
T Consensus       152 -------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----  220 (272)
T 3rfs_A          152 -------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----  220 (272)
T ss_dssp             -------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----
T ss_pred             -------HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----
Confidence                   234455566666666666555444455556666666666666655555555566666666666655432    


Q ss_pred             CCCCCCcceEecCCCcc
Q 006752          518 FKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       518 l~~~~~L~~L~l~~N~l  534 (632)
                         ++.|+.++++.|.+
T Consensus       221 ---~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          221 ---CPGIRYLSEWINKH  234 (272)
T ss_dssp             ---TTTTHHHHHHHHHT
T ss_pred             ---CcHHHHHHHHHHhC
Confidence               33455555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.5e-22  Score=204.83  Aligned_cols=251  Identities=15%  Similarity=0.156  Sum_probs=151.4

Q ss_pred             EeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhH----HhhhCCC-CcCEEeccCCCCCChhhHhhhcCC-----
Q 006752           70 IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMT-CLKELDLSRCVKVTDAGMKHLLSI-----  139 (632)
Q Consensus        70 L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~----~~l~~l~-~L~~L~L~~~~~l~~~~~~~l~~l-----  139 (632)
                      +++++| .+++.++..+...++|++|++++|. +++..+    .++.+++ +|++|++++| .+++..+..+..+     
T Consensus         3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCC-TTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred             cccccc-cchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence            567777 4667777777777778888888888 777666    6677787 8888888888 6777666666553     


Q ss_pred             CCccEEEccCCCCCHhHHHH----hcCC-CCCCEEEcCCCCCChHHHHhc----cC-CCCccEEEecCCCCCchhh----
Q 006752          140 STLEKLWLSETGLTADGIAL----LSSL-QNLSVLDLGGLPVTDLVLRSL----QV-LTKLEYLDLWGSQVSNRGA----  205 (632)
Q Consensus       140 ~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~----  205 (632)
                      ++|++|+|++|.+++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..+    
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            88888888888887655543    4444 788888888888877655444    33 3588888888888775443    


Q ss_pred             HhhcCCC-CCcEEEccCCCCCCCC---------CC-CCCCEEECCCCcccc-----hhccccC-CCCCcEEEeeCCCCCc
Q 006752          206 AVLKMFP-RLSFLNLAWTGVTKLP---------NI-SSLECLNLSNCTIDS-----ILEGNEN-KAPLAKISLAGTTFIN  268 (632)
Q Consensus       206 ~~l~~l~-~L~~L~l~~n~l~~l~---------~l-~~L~~L~L~~~~l~~-----~~~~~~~-~~~L~~L~l~~n~~~~  268 (632)
                      ..+..++ +|++|++++|.+++.+         .+ ++|++|++++|.+..     ++..+.. .++|++|++++|.+.+
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            3344444 6666666666655422         22 355555555555543     3333332 2344444444444443


Q ss_pred             hhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCC---CCchHHHHHHhcC---CCCcEEEccCCcCcchh
Q 006752          269 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSM---IGDDSVEMVACVG---ANLRNLNLSNTRFSSAG  342 (632)
Q Consensus       269 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~---l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~  342 (632)
                      .+....                   ...+..+++|++|++++|.   ++......+....   ++|++|++++|++.+..
T Consensus       240 ~~~~~l-------------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          240 PSLENL-------------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             CCHHHH-------------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             HHHHHH-------------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            222100                   0123445566666666665   3222222222211   45666666666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.5e-22  Score=197.05  Aligned_cols=180  Identities=19%  Similarity=0.297  Sum_probs=136.9

Q ss_pred             CccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  357 (632)
                      .+++|++++|.++.+  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ ..+++|++|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~  115 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVF-DQLVNLAELR  115 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC-TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEE
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC-CCCCEEECCCCcCCcCCHhHc-ccccCCCEEE
Confidence            344444444444444  235556666666666666664444333444 677777777777766554443 5688899999


Q ss_pred             ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET  437 (632)
Q Consensus       358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  437 (632)
                      +++|++++..+..|..+++|++|++++|.+++..+.                                            
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------------------------------------------  151 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--------------------------------------------  151 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------------------------
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--------------------------------------------
Confidence            999988887777788999999999999999876443                                            


Q ss_pred             ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                             .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus       152 -------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          152 -------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             -------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence                   46778899999999999999877789999999999999999999888889999999999999998765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.9e-22  Score=192.68  Aligned_cols=191  Identities=17%  Similarity=0.253  Sum_probs=160.2

Q ss_pred             CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  380 (632)
                      ...++++++++.++.. |..+   .+.+++|++++|++++..+..+ +.+++|++|++++|.+++..+..+..+++|++|
T Consensus        14 ~~~~~l~~~~~~l~~~-p~~~---~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSV-PSGI---PADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCSSC-CSCC---CTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCcccc-CCCC---CCCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            3456677777766642 2221   2578888888888887766555 678999999999999998888888999999999


Q ss_pred             EccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc
Q 006752          381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT  460 (632)
Q Consensus       381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n  460 (632)
                      ++++|++++..+.                                                   .|..+++|++|+|++|
T Consensus        89 ~L~~n~l~~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           89 GLANNQLASLPLG---------------------------------------------------VFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ECTTSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSS
T ss_pred             ECCCCcccccChh---------------------------------------------------HhcccCCCCEEEcCCC
Confidence            9999999976544                                                   4677899999999999


Q ss_pred             CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh-HH
Q 006752          461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE-DA  539 (632)
Q Consensus       461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~-~~  539 (632)
                      .+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.|. +.
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99998777789999999999999999998888899999999999999999999888999999999999999999887 66


Q ss_pred             HHHHHHHc
Q 006752          540 ILQFCKMH  547 (632)
Q Consensus       540 ~~~~~~~~  547 (632)
                      +.++..+.
T Consensus       198 ~~~l~~~~  205 (251)
T 3m19_A          198 ILYLSQWI  205 (251)
T ss_dssp             HHHHHHHH
T ss_pred             cHHHHHHH
Confidence            66555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=5.7e-22  Score=198.67  Aligned_cols=228  Identities=15%  Similarity=0.101  Sum_probs=168.9

Q ss_pred             CCCCcEEEeeCCCCCch--hhhhhhhcCCCccEEeccCCCCCch--hhh--hcCCCCCeeeccCCCCCchHH----HHHH
Q 006752          253 KAPLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMVA  322 (632)
Q Consensus       253 ~~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~--~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~  322 (632)
                      ...++.+.+.++.+...  .....+..+++|++|++++|.+.+.  ..+  ..+++|++|++++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34567777777766542  2222233456788888888888765  333  778899999999998886433    2233


Q ss_pred             hcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH--H--HHhcCCCccEEEccCCccccccCCCccch
Q 006752          323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI--S--YMSMMPSLKFIDISNTDIKGMYPSGQMNV  398 (632)
Q Consensus       323 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~--~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~  398 (632)
                      .. ++|++|++++|++++..+..+ +.+++|++|++++|++.+...  .  .+..+++|++|++++|+++...+...   
T Consensus       143 ~~-~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---  217 (310)
T 4glp_A          143 LK-PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA---  217 (310)
T ss_dssp             BC-SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH---
T ss_pred             hc-cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH---
Confidence            33 889999999999887766655 678899999999998876422  1  23578899999999998864311100   


Q ss_pred             hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCc---cc
Q 006752          399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KE  475 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~  475 (632)
                                                                   ..+.++++|++|+|++|++++..|..+..+   ++
T Consensus       218 ---------------------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  252 (310)
T 4glp_A          218 ---------------------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA  252 (310)
T ss_dssp             ---------------------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred             ---------------------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence                                                         125778999999999999999878777776   69


Q ss_pred             ccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCccc
Q 006752          476 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL  535 (632)
Q Consensus       476 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~  535 (632)
                      |++|+|++|+++. +|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++.
T Consensus       253 L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          253 LNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            9999999999996 566553  7999999999999985 33 677899999999999973

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.5e-21  Score=193.43  Aligned_cols=81  Identities=23%  Similarity=0.396  Sum_probs=38.6

Q ss_pred             cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceE
Q 006752          448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL  527 (632)
Q Consensus       448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L  527 (632)
                      .+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|
T Consensus       149 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  222 (308)
T 1h6u_A          149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence            34445555555555544222  4444555555555555544332  4445555555555555544321  4444555555


Q ss_pred             ecCCCcc
Q 006752          528 DLHGGWL  534 (632)
Q Consensus       528 ~l~~N~l  534 (632)
                      ++++|++
T Consensus       223 ~l~~N~i  229 (308)
T 1h6u_A          223 TLTNQTI  229 (308)
T ss_dssp             EEEEEEE
T ss_pred             EccCCee
Confidence            5555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=195.25  Aligned_cols=219  Identities=19%  Similarity=0.161  Sum_probs=114.1

Q ss_pred             CccEEEcCCCCCCCchhHHhh---hCCCCcCEEeccCCCCCChhhHhhh--cCCCCccEEEccCCCCCHhHH----HHhc
Q 006752           91 YLRSLNVADCRRVTSSALWAL---TGMTCLKELDLSRCVKVTDAGMKHL--LSISTLEKLWLSETGLTADGI----ALLS  161 (632)
Q Consensus        91 ~L~~L~L~~~~~i~~~~~~~l---~~l~~L~~L~L~~~~~l~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~----~~~~  161 (632)
                      .++.+.+.++. +++.....+   ..+++|++|++++| .+.+..+..+  ..+++|++|++++|.+++..+    ..+.
T Consensus        65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35555555554 443322221   13344666666655 4444444444  455566666666665554211    2334


Q ss_pred             CCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCch--hh--HhhcCCCCCcEEEccCCCCCCCC--------C
Q 006752          162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR--GA--AVLKMFPRLSFLNLAWTGVTKLP--------N  229 (632)
Q Consensus       162 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~--~~l~~l~~L~~L~l~~n~l~~l~--------~  229 (632)
                      .+++|++|++++|.+.+..+..++.+++|++|++++|++.+.  .+  ..+..+++|++|++++|.++.++        .
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            555666666666665555555555556666666666655432  11  11234555555555555554322        3


Q ss_pred             CCCCCEEECCCCcccch-hccccCC---CCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCe
Q 006752          230 ISSLECLNLSNCTIDSI-LEGNENK---APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH  305 (632)
Q Consensus       230 l~~L~~L~L~~~~l~~~-~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~  305 (632)
                      +++|++|++++|.+.+. |..++.+   ++|++|++++|.++.+|...    .++|++|++++|.+++++.+..+++|+.
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~~~~l~~L~~  298 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQPDELPEVDN  298 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCCchhhhCCCccE
Confidence            35555666666665543 4444433   46666666666666554432    2566666666666665544555666666


Q ss_pred             eeccCCCCCc
Q 006752          306 LDLSSSMIGD  315 (632)
Q Consensus       306 L~l~~n~l~~  315 (632)
                      |++++|.+++
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            6666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.1e-20  Score=188.85  Aligned_cols=192  Identities=21%  Similarity=0.378  Sum_probs=110.9

Q ss_pred             CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccC
Q 006752          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  310 (632)
Q Consensus       231 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~  310 (632)
                      ++|++|++++|.+..++ .+..+++|++|++++|.+.+++.   +..+++|++|++++|.++..+.+..+          
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l----------  106 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGL----------  106 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTC----------
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCC----------
Confidence            34445555555444443 23444555555555555444433   23444444444444444444334444          


Q ss_pred             CCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccc
Q 006752          311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       311 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~  390 (632)
                                     ++|++|++++|++++...   +..+++|++|++++|++++..+  +..+++|++|++++|.+++.
T Consensus       107 ---------------~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          107 ---------------QSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             ---------------TTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             ---------------CCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence                           444444444444444322   2456666666666666665443  66677777777777766653


Q ss_pred             cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccc
Q 006752          391 YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  470 (632)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  470 (632)
                      .                                                     .+..+++|++|++++|.+++..+  +
T Consensus       167 ~-----------------------------------------------------~l~~l~~L~~L~l~~n~l~~~~~--l  191 (308)
T 1h6u_A          167 T-----------------------------------------------------PLANLSKLTTLKADDNKISDISP--L  191 (308)
T ss_dssp             G-----------------------------------------------------GGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             h-----------------------------------------------------hhcCCCCCCEEECCCCccCcChh--h
Confidence            1                                                     13456677777777777776433  6


Q ss_pred             cCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       471 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      ..+++|++|++++|++++..  .+..+++|+.|++++|++++.
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            67777777777777777755  367777888888888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=3.1e-21  Score=190.86  Aligned_cols=202  Identities=16%  Similarity=0.172  Sum_probs=132.5

Q ss_pred             CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeec
Q 006752          229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL  308 (632)
Q Consensus       229 ~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l  308 (632)
                      +++++++++++++.++.+|..+.  ++++.|++++|.+.++++. .+..+++|++|++++|.++.++....+++|++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            44556666666666666665543  4566666666666554432 33455556666666665555433344455555555


Q ss_pred             cCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccc
Q 006752          309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  388 (632)
Q Consensus       309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~  388 (632)
                      ++|.++                         .. +..+ ..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        85 s~N~l~-------------------------~l-~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           85 SHNQLQ-------------------------SL-PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             CSSCCS-------------------------SC-CCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             CCCcCC-------------------------cC-chhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence            555443                         21 1111 45677778888888777766667778888888888888887


Q ss_pred             cccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccc
Q 006752          389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF  468 (632)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  468 (632)
                      +..+.                                                   .|..+++|+.|+|++|++++..+.
T Consensus       138 ~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G          138 TLPPG---------------------------------------------------LLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             CCCTT---------------------------------------------------TTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ccChh---------------------------------------------------hcccccCCCEEECCCCcCCccCHH
Confidence            65443                                                   356677888888888888876666


Q ss_pred             cccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          469 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       469 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      .|..+++|++|+|++|+++. +|..+..+++|+.|++++|++..
T Consensus       167 ~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          167 LLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             HhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence            67778888888888888886 55666677788888888887753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.6e-21  Score=187.70  Aligned_cols=195  Identities=14%  Similarity=0.192  Sum_probs=133.1

Q ss_pred             CccEEeccCCCCCch--hhhhcCCCCCeeeccCCC-CCchHHHHHHhcCCCCcEEEccC-CcCcchhHHHHHhcCCCCcE
Q 006752          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEI  355 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~  355 (632)
                      ++++|++++|.++.+  ..+..+++|++|++++|. +++..+..+..+ ++|++|++++ |++++..+..+ ..+++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDAL-KELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSE-ECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHh-CCCCCCCE
Confidence            444445555544444  234555666666666664 554444344444 5666666666 66665444433 45777888


Q ss_pred             EEccCCCCChHHHHHHhcCCCcc---EEEccCC-ccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752          356 LSLSGTQIDDYAISYMSMMPSLK---FIDISNT-DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ  431 (632)
Q Consensus       356 L~L~~n~l~~~~~~~l~~~~~L~---~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (632)
                      |++++|++++ .|. +..+++|+   +|++++| .+++..+.                                      
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~--------------------------------------  149 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN--------------------------------------  149 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT--------------------------------------
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc--------------------------------------
Confidence            8888877776 333 66777777   8888888 77765443                                      


Q ss_pred             hcccccccccchHHhhcCCccc-ccccCccCCCCCccccccCccccccccccccc-CCCcchhhhccC-CCCcEEeecCc
Q 006752          432 QVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDA  508 (632)
Q Consensus       432 ~l~~~~~~l~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~ls~N  508 (632)
                                   .|.++++|+ +|++++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|
T Consensus       150 -------------~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          150 -------------AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             -------------TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             -------------cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                         466788899 9999999988654445555 889999999995 888777888888 99999999999


Q ss_pred             eeccCCCCCCCCCCCcceEecCCCc
Q 006752          509 VLTNSGLGSFKPPRSLKLLDLHGGW  533 (632)
Q Consensus       509 ~l~~~~~~~l~~~~~L~~L~l~~N~  533 (632)
                      ++++..+.   .+++|+.|++++++
T Consensus       216 ~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          216 SVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCCCT---TCTTCSEEECTTC-
T ss_pred             ccccCChh---HhccCceeeccCcc
Confidence            99876444   45788888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1.9e-20  Score=181.39  Aligned_cols=180  Identities=20%  Similarity=0.257  Sum_probs=143.1

Q ss_pred             CccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752          280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS  359 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  359 (632)
                      ..++++++++.++.++.- -.++++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECC
Confidence            455666666666655321 12577778888877777666666665 788888888888877666554 568899999999


Q ss_pred             CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccc
Q 006752          360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL  439 (632)
Q Consensus       360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  439 (632)
                      +|++++..+..|..+++|++|++++|++++..+.                                              
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------------------------  125 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG----------------------------------------------  125 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------------------------------
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChh----------------------------------------------
Confidence            9998887777788899999999999999876444                                              


Q ss_pred             ccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       440 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                           .|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++..
T Consensus       126 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          126 -----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                 356778999999999999987777888999999999999999998888899999999999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=7.2e-20  Score=173.19  Aligned_cols=164  Identities=18%  Similarity=0.237  Sum_probs=142.2

Q ss_pred             cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhh
Q 006752          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV  408 (632)
Q Consensus       329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~  408 (632)
                      +.++.+++.++....    .-.+++++|++++|++++..+..|..+++|++|+|++|.+++..|.               
T Consensus        14 ~~v~c~~~~l~~iP~----~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~---------------   74 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT----NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD---------------   74 (220)
T ss_dssp             TEEECTTSCCSSCCS----SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT---------------
T ss_pred             CEEEcCCCCcCcCCC----ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH---------------
Confidence            456777776665422    1235789999999998887777888999999999999999987666               


Q ss_pred             hhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752          409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  488 (632)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  488 (632)
                                                          .|.++++|++|+|++|.++...+..|..+++|++|+|++|++++
T Consensus        75 ------------------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           75 ------------------------------------AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             ------------------------------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ------------------------------------HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                                                56788999999999999998777778899999999999999999


Q ss_pred             cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          489 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       489 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      ..|..|..+++|++|++++|++++..+..|..+++|++|++++|++.|+|.+.++.++.
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l  177 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL  177 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999888877654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=8.3e-20  Score=172.80  Aligned_cols=165  Identities=18%  Similarity=0.212  Sum_probs=139.6

Q ss_pred             cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH-HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI  407 (632)
Q Consensus       329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  407 (632)
                      +++++++|.++... .   .-.+.+++|++++|++++..+ ..|..+++|++|++++|++++..+.              
T Consensus        14 ~~l~~s~n~l~~iP-~---~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------------   75 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-E---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--------------   75 (220)
T ss_dssp             TEEECCSSCCSSCC-S---CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT--------------
T ss_pred             CEeEeCCCCcccCc-c---CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH--------------
Confidence            46777777766532 1   123467888888888877643 4578899999999999999887554              


Q ss_pred             hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                                                           .|.++++|++|+|++|.+++..+..|..+++|++|+|++|+++
T Consensus        76 -------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           76 -------------------------------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             -------------------------------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             -------------------------------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence                                                 4678899999999999999988888999999999999999999


Q ss_pred             CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      +..|..|..+++|++|++++|++++..|..|..+++|++|++++|++.|+|.+.++.++..
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            9989999999999999999999999999999999999999999999999998877776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=2.8e-20  Score=178.92  Aligned_cols=194  Identities=12%  Similarity=0.147  Sum_probs=142.2

Q ss_pred             CCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC-CCch--hhhhcCCCCCeeeccC-CCCCchHHHHHHhcCCCCcE
Q 006752          255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN  330 (632)
Q Consensus       255 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~--~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~  330 (632)
                      ++++|++++|.+++++.. .+..+++|++|++++|. ++.+  ..+..+++|++|++++ |.+++..+..+..+ ++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred             cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence            566666666666555442 34456666666666665 5555  2566677777777776 77765555555554 77777


Q ss_pred             EEccCCcCcchhHHHHHhcCCCCc---EEEccCC-CCChHHHHHHhcCCCcc-EEEccCCccccccCCCccchhhhhhhh
Q 006752          331 LNLSNTRFSSAGVGILAGHLPNLE---ILSLSGT-QIDDYAISYMSMMPSLK-FIDISNTDIKGMYPSGQMNVFFSAYCF  405 (632)
Q Consensus       331 L~l~~n~l~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~l~~~~~L~-~L~Ls~n~i~~~~~~~~~~~~~~~~~~  405 (632)
                      |++++|++++...   ++.+++|+   +|++++| .+++..+..|..+++|+ +|++++|+++. +|..           
T Consensus       110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~-----------  174 (239)
T 2xwt_C          110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY-----------  174 (239)
T ss_dssp             EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTT-----------
T ss_pred             EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHh-----------
Confidence            7777777766322   25677777   9999999 88887777888999999 99999999985 4542           


Q ss_pred             hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccC-CCCCccccccCc-cccccccccc
Q 006752          406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTF-KELIHLSLRN  483 (632)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~  483 (632)
                                                             .+.. ++|++|++++|. +++..+..|..+ ++|+.|++++
T Consensus       175 ---------------------------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          175 ---------------------------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             ---------------------------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ---------------------------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                                                   2444 789999999994 998777889999 9999999999


Q ss_pred             ccCCCcchhhhccCCCCcEEeecCc
Q 006752          484 ASLTDVSLHQLSSLSKLTNLSIRDA  508 (632)
Q Consensus       484 n~l~~~~~~~~~~l~~L~~L~ls~N  508 (632)
                      |++++..+.   .+++|+.|+++++
T Consensus       215 N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CccccCChh---HhccCceeeccCc
Confidence            999986544   5778999999876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=8e-20  Score=171.66  Aligned_cols=182  Identities=15%  Similarity=0.127  Sum_probs=144.2

Q ss_pred             cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhh
Q 006752          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV  408 (632)
Q Consensus       329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~  408 (632)
                      +.++.+++.++....    +..++|++|++++|++++..+..+..+++|++|++++|++++..+.               
T Consensus        10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------   70 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG---------------   70 (208)
T ss_dssp             TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------
T ss_pred             CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh---------------
Confidence            456666666554332    2346788889988888877777788899999999999998865433               


Q ss_pred             hhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752          409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  488 (632)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  488 (632)
                                                          .|.++++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus        71 ------------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  114 (208)
T 2o6s_A           71 ------------------------------------VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS  114 (208)
T ss_dssp             ------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ------------------------------------hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence                                                45678899999999999998777778889999999999999999


Q ss_pred             cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCC
Q 006752          489 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSN  568 (632)
Q Consensus       489 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  568 (632)
                      ..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.+.                .....+.+.|+++
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----------------~l~~L~~~~n~~~  178 (208)
T 2o6s_A          115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----------------GIRYLSEWINKHS  178 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT----------------TTHHHHHHHHHCT
T ss_pred             cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC----------------CHHHHHHHHHhCC
Confidence            888788999999999999999998877778889999999999999865331                1233445677888


Q ss_pred             CCCCCcchhhhhh
Q 006752          569 GPSPSRTSLRASL  581 (632)
Q Consensus       569 g~ip~~~~~~~~~  581 (632)
                      |.+|..++.+...
T Consensus       179 g~ip~~~~~l~~~  191 (208)
T 2o6s_A          179 GVVRNSAGSVAPD  191 (208)
T ss_dssp             TTBBCTTSSBCTT
T ss_pred             ceeeccCccccCC
Confidence            9999888877543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.4e-19  Score=179.12  Aligned_cols=172  Identities=24%  Similarity=0.307  Sum_probs=93.4

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .+++|+.|++++|.+...+.+..+++|++|++++|.+++..+  +..+ ++|++|++++|++++...   .+.+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLSS---LKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGGG---GTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCCcCCCChh---hccCCCCCEE
Confidence            345566666666666555555555666666666666555433  3333 555666666655554321   2445555555


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      ++++|++++.  ..+..+++|+.|++++|++++. +                                            
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~--------------------------------------------  150 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--------------------------------------------  150 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G--------------------------------------------
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h--------------------------------------------
Confidence            5555555542  2345555555555555555543 1                                            


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                              .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus       151 --------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          151 --------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             --------GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             --------hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence                    24455556666666666655433  55556666666666666553 2 255556666666666655553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3e-20  Score=190.11  Aligned_cols=186  Identities=19%  Similarity=0.221  Sum_probs=153.4

Q ss_pred             CeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (632)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  383 (632)
                      +.++++++.++. +|..   ..+.++.|++++|++++..+..+...+++|++|++++|++++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCcc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            567777777764 2322   225688888888888877665542278999999999999998888889999999999999


Q ss_pred             CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752          384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  463 (632)
Q Consensus       384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~  463 (632)
                      +|++++..+.                                                   .|.++++|++|+|++|+++
T Consensus        97 ~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           97 SNHLHTLDEF---------------------------------------------------LFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             SSCCCEECTT---------------------------------------------------TTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHH---------------------------------------------------HhCCCcCCCEEECCCCccc
Confidence            9999886444                                                   4678899999999999999


Q ss_pred             CCccccccCcccccccccccccCCCcchhhh---ccCCCCcEEeecCceeccCCCCCCCCCCC--cceEecCCCcccChH
Q 006752          464 DATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSKLTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTED  538 (632)
Q Consensus       464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~~~~l~~~~~--L~~L~l~~N~l~~~~  538 (632)
                      +..+..|..+++|+.|+|++|+|++..+..|   ..+++|+.|+|++|+|++..+..+..++.  ++.|++++|++.|+|
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            9888999999999999999999999777666   67999999999999999877677777766  489999999999999


Q ss_pred             HHHHHH
Q 006752          539 AILQFC  544 (632)
Q Consensus       539 ~~~~~~  544 (632)
                      .+.++.
T Consensus       206 ~l~~~~  211 (361)
T 2xot_A          206 KLYQLF  211 (361)
T ss_dssp             HHHHHH
T ss_pred             CcHHHH
Confidence            887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=8.9e-19  Score=173.33  Aligned_cols=191  Identities=20%  Similarity=0.298  Sum_probs=159.3

Q ss_pred             CCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEc
Q 006752          279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL  358 (632)
Q Consensus       279 ~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L  358 (632)
                      ..+..+.+..+.+.....+..+++|++|++++|.+.+..  .+..+ ++|++|++++|++++..+   ...+++|++|++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l   97 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc---cccCCCCCEEEC
Confidence            345555677777777766778899999999999988652  35555 899999999999988765   378999999999


Q ss_pred             cCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccc
Q 006752          359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETD  438 (632)
Q Consensus       359 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  438 (632)
                      ++|.+++..  .+..+++|++|++++|++++. +                                              
T Consensus        98 ~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~-~----------------------------------------------  128 (291)
T 1h6t_A           98 DENKVKDLS--SLKDLKKLKSLSLEHNGISDI-N----------------------------------------------  128 (291)
T ss_dssp             CSSCCCCGG--GGTTCTTCCEEECTTSCCCCC-G----------------------------------------------
T ss_pred             CCCcCCCCh--hhccCCCCCEEECCCCcCCCC-h----------------------------------------------
Confidence            999998743  388999999999999998874 2                                              


Q ss_pred             cccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCC
Q 006752          439 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF  518 (632)
Q Consensus       439 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  518 (632)
                            .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|+.|++++|++++. + .+
T Consensus       129 ------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l  196 (291)
T 1h6t_A          129 ------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-AL  196 (291)
T ss_dssp             ------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GG
T ss_pred             ------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hh
Confidence                  366788999999999999985  678889999999999999999765  88999999999999999985 3 48


Q ss_pred             CCCCCcceEecCCCcccC
Q 006752          519 KPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       519 ~~~~~L~~L~l~~N~l~~  536 (632)
                      ..+++|+.|++++|++..
T Consensus       197 ~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          197 AGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCSEEEEEEEEEEC
T ss_pred             ccCCCCCEEECcCCcccC
Confidence            889999999999998743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2.7e-18  Score=163.55  Aligned_cols=157  Identities=20%  Similarity=0.216  Sum_probs=134.4

Q ss_pred             CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhh
Q 006752          327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM  406 (632)
Q Consensus       327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  406 (632)
                      +-+.++.++++++....    +..++|++|++++|.+++..+..|..+++|++|+|++|++.+..+.             
T Consensus        20 s~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~-------------   82 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-------------   82 (229)
T ss_dssp             ETTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------
T ss_pred             eCCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh-------------
Confidence            34567777776664432    2347899999999999988888889999999999999999765433             


Q ss_pred             hhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC
Q 006752          407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  486 (632)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  486 (632)
                                                            .|.++++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus        83 --------------------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           83 --------------------------------------VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                  467789999999999999998778889999999999999999


Q ss_pred             CCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHH
Q 006752          487 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA  539 (632)
Q Consensus       487 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~  539 (632)
                      +. +|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.|.|.
T Consensus       125 ~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 TE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            96 67888999999999999999999888889999999999999999988774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.3e-18  Score=188.54  Aligned_cols=197  Identities=22%  Similarity=0.270  Sum_probs=142.4

Q ss_pred             cEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCC
Q 006752          257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT  336 (632)
Q Consensus       257 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  336 (632)
                      ..+.+..+.+.++..   ...++.|+.|++++|.+..++.+..+++|+.|+|++|.+.+..+  +..+ ++|+.|++++|
T Consensus        24 ~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N   97 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDEN   97 (605)
T ss_dssp             HHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCSS
T ss_pred             HHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcCC
Confidence            334444555544332   23567788888888888877778888888888888888877655  4454 78888888888


Q ss_pred             cCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccc
Q 006752          337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAY  416 (632)
Q Consensus       337 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (632)
                      .+.+..  .+ ..+++|++|++++|++.+.  ..+..+++|+.|+|++|.+++. +                        
T Consensus        98 ~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~------------------------  147 (605)
T 1m9s_A           98 KIKDLS--SL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T------------------------  147 (605)
T ss_dssp             CCCCCT--TS-TTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G------------------------
T ss_pred             CCCCCh--hh-ccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h------------------------
Confidence            877643  22 5678888888888887763  3477788888888888877764 1                        


Q ss_pred             cccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhcc
Q 006752          417 GYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  496 (632)
Q Consensus       417 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  496 (632)
                                                  .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.|++.  ..+..
T Consensus       148 ----------------------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~  195 (605)
T 1m9s_A          148 ----------------------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAG  195 (605)
T ss_dssp             ----------------------------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTT
T ss_pred             ----------------------------hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHcc
Confidence                                        36677888888888888888655  77888888888888888874  35778


Q ss_pred             CCCCcEEeecCceeccCCCCCCCCC
Q 006752          497 LSKLTNLSIRDAVLTNSGLGSFKPP  521 (632)
Q Consensus       497 l~~L~~L~ls~N~l~~~~~~~l~~~  521 (632)
                      +++|+.|+|++|++++.....+..+
T Consensus       196 l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          196 LKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             CTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             CCCCCEEEccCCcCcCCcccccccE
Confidence            8888888888888887644444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=7.5e-19  Score=164.98  Aligned_cols=161  Identities=17%  Similarity=0.185  Sum_probs=90.7

Q ss_pred             CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  380 (632)
                      +++++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ +.+++|++|++++|++++..+..+..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            345555555555544333333333 555555555555554333322 445666666666666665555555566666666


Q ss_pred             EccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc
Q 006752          381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT  460 (632)
Q Consensus       381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n  460 (632)
                      ++++|++++..+.                                                   .+.++++|++|++++|
T Consensus       106 ~L~~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A          106 ALNTNQLQSLPDG---------------------------------------------------VFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             ECCSSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSS
T ss_pred             EcCCCcCcccCHh---------------------------------------------------HhccCCcCCEEECCCC
Confidence            6666666654332                                                   2445566666666666


Q ss_pred             CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC
Q 006752          461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  521 (632)
Q Consensus       461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~  521 (632)
                      .+++..+..+..+++|++|++++|.+.+       .+++|++|+++.|++++.+|..++.+
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            6666555556666666666666665543       34556666666666666666665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=6e-19  Score=179.72  Aligned_cols=239  Identities=15%  Similarity=0.088  Sum_probs=136.9

Q ss_pred             EEEccCCCCCCCCC--CCCCCEEECCCCcccchhcc-ccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752          216 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (632)
Q Consensus       216 ~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  292 (632)
                      +++.++++++.+|.  .+++++|++++|+++.+|.. +.++++|++|++++|++.+..+.                    
T Consensus        13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--------------------   72 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA--------------------   72 (350)
T ss_dssp             EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT--------------------
T ss_pred             EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh--------------------
Confidence            44445555555442  13455555555555555443 23445555555555544332222                    


Q ss_pred             chhhhhcCCCCCe-eeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC-CCCChHHHHH
Q 006752          293 RFCFLTQMKALEH-LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISY  370 (632)
Q Consensus       293 ~~~~l~~~~~L~~-L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~  370 (632)
                        .+|.+++++++ +.+.+|+++...+..+..+ ++|++|++++|++.......+ ....++..+++.+ +++....+..
T Consensus        73 --~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~  148 (350)
T 4ay9_X           73 --DVFSNLPKLHEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNS  148 (350)
T ss_dssp             --TSBCSCTTCCEEEEEEETTCCEECTTSBCCC-TTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTS
T ss_pred             --hHhhcchhhhhhhcccCCcccccCchhhhhc-cccccccccccccccCCchhh-cccchhhhhhhccccccccccccc
Confidence              23444444443 3333455554444444444 556666666665554333222 2334566676654 4555544445


Q ss_pred             HhcC-CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752          371 MSMM-PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL  449 (632)
Q Consensus       371 l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l  449 (632)
                      |..+ ..++.|++++|+++...+..                                                   + ..
T Consensus       149 f~~~~~~l~~L~L~~N~i~~i~~~~---------------------------------------------------f-~~  176 (350)
T 4ay9_X          149 FVGLSFESVILWLNKNGIQEIHNSA---------------------------------------------------F-NG  176 (350)
T ss_dssp             STTSBSSCEEEECCSSCCCEECTTS---------------------------------------------------S-TT
T ss_pred             hhhcchhhhhhccccccccCCChhh---------------------------------------------------c-cc
Confidence            5554 35888899999888753332                                                   2 23


Q ss_pred             CcccccccCc-cCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEe
Q 006752          450 NHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD  528 (632)
Q Consensus       450 ~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~  528 (632)
                      .+|++|++++ |.++...+..|..+++|++|+|++|+|+.+.+..|.+   |+.|.+.++.--...| .+..+++|+.++
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~  252 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVALMEAS  252 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEE
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcChhhCc
Confidence            5788999975 6777765667889999999999999999876655555   4444444433223334 477889999999


Q ss_pred             cCCCcc
Q 006752          529 LHGGWL  534 (632)
Q Consensus       529 l~~N~l  534 (632)
                      ++++..
T Consensus       253 l~~~~~  258 (350)
T 4ay9_X          253 LTYPSH  258 (350)
T ss_dssp             CSCHHH
T ss_pred             CCCCcc
Confidence            987653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=8.6e-18  Score=182.17  Aligned_cols=188  Identities=21%  Similarity=0.294  Sum_probs=113.8

Q ss_pred             CccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752          280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS  359 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  359 (632)
                      .+..+.+..+.+.....+..+++|+.|++++|.+.+..  .+..+ ++|+.|+|++|++++..+   +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG---GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh---hccCCCCCEEECc
Confidence            34445555555555555556666666666666665432  23333 666666666666665544   2556666666666


Q ss_pred             CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccc
Q 006752          360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL  439 (632)
Q Consensus       360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  439 (632)
                      +|.+++..  .+..+++|+.|+|++|.+.+. +                                               
T Consensus        96 ~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~-----------------------------------------------  125 (605)
T 1m9s_A           96 ENKIKDLS--SLKDLKKLKSLSLEHNGISDI-N-----------------------------------------------  125 (605)
T ss_dssp             SSCCCCCT--TSTTCTTCCEEECTTSCCCCC-G-----------------------------------------------
T ss_pred             CCCCCCCh--hhccCCCCCEEEecCCCCCCC-c-----------------------------------------------
Confidence            66665422  456666666666666666542 1                                               


Q ss_pred             ccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC
Q 006752          440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK  519 (632)
Q Consensus       440 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~  519 (632)
                           .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++++.  ..+.
T Consensus       126 -----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~  194 (605)
T 1m9s_A          126 -----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA  194 (605)
T ss_dssp             -----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred             -----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence                 245556666666666666663  455666666666666666666554  66666666666666666663  3456


Q ss_pred             CCCCcceEecCCCcc
Q 006752          520 PPRSLKLLDLHGGWL  534 (632)
Q Consensus       520 ~~~~L~~L~l~~N~l  534 (632)
                      .+++|+.|++++|++
T Consensus       195 ~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          195 GLKNLDVLELFSQEC  209 (605)
T ss_dssp             TCTTCSEEECCSEEE
T ss_pred             cCCCCCEEEccCCcC
Confidence            666666666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=1.6e-18  Score=176.50  Aligned_cols=235  Identities=16%  Similarity=0.123  Sum_probs=145.0

Q ss_pred             cEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCC-----CCCCCCCEEECCCCccc-chhccc-cCCCCCcE-EEee
Q 006752          191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTID-SILEGN-ENKAPLAK-ISLA  262 (632)
Q Consensus       191 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l-----~~l~~L~~L~L~~~~l~-~~~~~~-~~~~~L~~-L~l~  262 (632)
                      ++++.++++++. +|..+  .+++++|++++|.++.+     .++++|++|++++|.+. .++... .+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            567888888875 45444  36899999999999864     46899999999999985 466554 47777765 5566


Q ss_pred             CCCCCchhhhhhhhcCCCccEEeccCCCCCchhh--hhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcc
Q 006752          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF--LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS  340 (632)
Q Consensus       263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  340 (632)
                      +|++..+++. .+..+++|++|++++|.+...+.  +....++..+++.++                        +++..
T Consensus        89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------------~~i~~  143 (350)
T 4ay9_X           89 ANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------------INIHT  143 (350)
T ss_dssp             ETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC------------------------TTCCE
T ss_pred             CCcccccCch-hhhhccccccccccccccccCCchhhcccchhhhhhhccc------------------------ccccc
Confidence            7888776553 34566667777777666655522  222233334444331                        23333


Q ss_pred             hhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752          341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI  420 (632)
Q Consensus       341 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (632)
                      .....+.+....++.|++++|+++...+..+ ...+|+.+++++++..+.+|..                          
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~--------------------------  196 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPND--------------------------  196 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTT--------------------------
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHH--------------------------
Confidence            2222222222356677777777765433333 3456777777654433344542                          


Q ss_pred             cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC
Q 006752          421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  500 (632)
Q Consensus       421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  500 (632)
                                              .|.++++|++||+++|+++...+..+.++++|+.+++.  .+.. .| .+..+++|
T Consensus       197 ------------------------~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l~~-lP-~l~~l~~L  248 (350)
T 4ay9_X          197 ------------------------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKK-LP-TLEKLVAL  248 (350)
T ss_dssp             ------------------------TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TCCC-CC-CTTTCCSC
T ss_pred             ------------------------HhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--CcCc-CC-CchhCcCh
Confidence                                    45667778888888888777555555555555555543  3333 33 36677788


Q ss_pred             cEEeecCc
Q 006752          501 TNLSIRDA  508 (632)
Q Consensus       501 ~~L~ls~N  508 (632)
                      +.++++++
T Consensus       249 ~~l~l~~~  256 (350)
T 4ay9_X          249 MEASLTYP  256 (350)
T ss_dssp             CEEECSCH
T ss_pred             hhCcCCCC
Confidence            88887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.4e-18  Score=161.69  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=129.9

Q ss_pred             CeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (632)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  383 (632)
                      +.+++++|.++.. |..+   ...+++|++++|++++..+...++.+++|++|++++|++++..+..|..+++|++|+++
T Consensus        14 ~~l~~s~n~l~~i-P~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccC-ccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            4777777777642 3222   25678888888888876543333678999999999999998888789999999999999


Q ss_pred             CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752          384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  463 (632)
Q Consensus       384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~  463 (632)
                      +|.+++..+.                                                   .|.++++|++|+|++|.++
T Consensus        90 ~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           90 SNRLENVQHK---------------------------------------------------MFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             SSCCCCCCGG---------------------------------------------------GGTTCSSCCEEECTTSCCC
T ss_pred             CCccCccCHh---------------------------------------------------HhcCCcCCCEEECCCCcCC
Confidence            9999887554                                                   5778899999999999999


Q ss_pred             CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      +..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++...
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            98899999999999999999999998899999999999999999998863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=7.7e-18  Score=180.46  Aligned_cols=194  Identities=19%  Similarity=0.235  Sum_probs=119.2

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752          213 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (632)
Q Consensus       213 ~L~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~  290 (632)
                      +++.|++++|.+++++.  .++|++|++++|.++.+|   ..                         +++|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~-------------------------l~~L~~L~Ls~N~  111 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---EL-------------------------PASLEYLDACDNR  111 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CC-------------------------CTTCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cc-------------------------cCCCCEEEccCCC
Confidence            56666666666555442  244555555555554444   22                         3445555555555


Q ss_pred             CCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 006752          291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (632)
Q Consensus       291 l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (632)
                      +++++.+..  +|++|++++|.+++. |.   . +++|+.|++++|++++...     .+++|++|++++|++++ +|. 
T Consensus       112 l~~ip~l~~--~L~~L~Ls~N~l~~l-p~---~-l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~-lp~-  177 (571)
T 3cvr_A          112 LSTLPELPA--SLKHLDVDNNQLTML-PE---L-PALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTF-LPE-  177 (571)
T ss_dssp             CSCCCCCCT--TCCEEECCSSCCSCC-CC---C-CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC-CCC-
T ss_pred             CCCcchhhc--CCCEEECCCCcCCCC-CC---c-CccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCC-cch-
Confidence            544433222  666666666666552 22   2 2677777777777765322     36778888888888776 333 


Q ss_pred             HhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCC
Q 006752          371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN  450 (632)
Q Consensus       371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~  450 (632)
                      +.  ++|+.|++++|+++. +|. +..                                              .-+...+
T Consensus       178 l~--~~L~~L~Ls~N~L~~-lp~-~~~----------------------------------------------~L~~~~~  207 (571)
T 3cvr_A          178 LP--ESLEALDVSTNLLES-LPA-VPV----------------------------------------------RNHHSEE  207 (571)
T ss_dssp             CC--TTCCEEECCSSCCSS-CCC-CC------------------------------------------------------
T ss_pred             hh--CCCCEEECcCCCCCc-hhh-HHH----------------------------------------------hhhcccc
Confidence            44  788888888888874 344 311                                              0012234


Q ss_pred             cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCC
Q 006752          451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK  499 (632)
Q Consensus       451 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  499 (632)
                      .|+.|+|++|.|+. +|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       208 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          208 TEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            45899999999887 6777777899999999999999888888776544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.1e-18  Score=167.87  Aligned_cols=170  Identities=18%  Similarity=0.264  Sum_probs=85.1

Q ss_pred             CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (632)
Q Consensus       278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  357 (632)
                      +.++..++++++.++.+..+..+++|++|++++|.+++..  .+..+ ++|++|++++|++++..+   ++.+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP---LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh---hccCCCCCEEE
Confidence            3445555555555555555555555666666655555322  23333 455555555555554433   24455555555


Q ss_pred             ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET  437 (632)
Q Consensus       358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  437 (632)
                      +++|++++..+  +.. ++|++|++++|++++.                                               
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-----------------------------------------------  121 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-----------------------------------------------  121 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-----------------------------------------------
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCC-----------------------------------------------
Confidence            55555543211  112 4555555555555442                                               


Q ss_pred             ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                            +.+..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|+++..
T Consensus       122 ------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 ------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                  1234455555555555555553 2 345555555555555555554  3455555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.7e-17  Score=156.89  Aligned_cols=153  Identities=16%  Similarity=0.199  Sum_probs=128.2

Q ss_pred             CeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (632)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  383 (632)
                      +.++++++.++.. |..   ..+.+++|++++|++++..+..+ ..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus        14 ~~v~c~~~~l~~i-P~~---l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTN---LPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSC-CSS---CCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcC-CCc---cCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            4566666666543 221   12678888888888887666555 668999999999999998888889999999999999


Q ss_pred             CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752          384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  463 (632)
Q Consensus       384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~  463 (632)
                      +|++++..+.                                                   .|.++++|++|+|++|.++
T Consensus        89 ~N~l~~l~~~---------------------------------------------------~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           89 GNKITELPKS---------------------------------------------------LFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             SSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCccCHh---------------------------------------------------HccCCCCCCEEECCCCCCC
Confidence            9999975333                                                   4677899999999999999


Q ss_pred             CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      +..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9889999999999999999999999888889999999999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.5e-17  Score=167.97  Aligned_cols=82  Identities=17%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             HhhcCCcccccccCccCCCCCccccccCccccc-ccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCC
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS  523 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~  523 (632)
                      +|.+|++|+.|+|.+| ++.+...+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++
T Consensus       245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~  322 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP  322 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred             hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence            4666777777777776 6666666677777777 777776 666666677777777777777777777777777777777


Q ss_pred             cceEe
Q 006752          524 LKLLD  528 (632)
Q Consensus       524 L~~L~  528 (632)
                      |+.++
T Consensus       323 L~~ly  327 (329)
T 3sb4_A          323 SKLIY  327 (329)
T ss_dssp             CCEEE
T ss_pred             hhhhc
Confidence            77765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=8.8e-17  Score=172.27  Aligned_cols=165  Identities=15%  Similarity=0.146  Sum_probs=102.5

Q ss_pred             CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (632)
Q Consensus       140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  219 (632)
                      ++|++|+|++|.++. +|   ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++
T Consensus        80 ~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            445555555555553 22   334566666666666555 333 333  66666666666655 222   4566666666


Q ss_pred             cCCCCCCCCC-CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCc-------cEEeccCCCC
Q 006752          220 AWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL-------SFLDVSNSSL  291 (632)
Q Consensus       220 ~~n~l~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L-------~~L~ls~n~l  291 (632)
                      ++|.++.++. +++|++|++++|.++.+|. +.  ++|+.|++++|.++.+|. +.  .  +|       +.|++++|.+
T Consensus       148 s~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          148 DNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCC
T ss_pred             CCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCcc
Confidence            6666666553 4567777777777777666 33  777777777777776655 21  1  45       7777777777


Q ss_pred             Cch-hhhhcCCCCCeeeccCCCCCchHHHHHHhc
Q 006752          292 SRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACV  324 (632)
Q Consensus       292 ~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  324 (632)
                      +.+ ..+..+++|+.|++++|.+++..|..+..+
T Consensus       220 ~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            776 345667788888888888877777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=8.7e-18  Score=171.84  Aligned_cols=127  Identities=25%  Similarity=0.284  Sum_probs=59.9

Q ss_pred             cEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhh-cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEc
Q 006752          257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  333 (632)
Q Consensus       257 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  333 (632)
                      +.++++++.+..+|..+    ...++.|++++|.++.+  ..+. .+++|++|++++|++++..+..+..+ ++|++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEEC
T ss_pred             CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEEC
Confidence            45666666666555432    23455555555555554  2233 45555555555555554443333333 44444444


Q ss_pred             cCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       334 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      ++|+++...+..+ ..+++|++|++++|++++..+..|..+++|+.|+|++|++++
T Consensus        96 s~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           96 SSNHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCCcCCcCCHHHh-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            4444444333222 334444444444444444434444444444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.3e-17  Score=162.20  Aligned_cols=170  Identities=24%  Similarity=0.345  Sum_probs=145.7

Q ss_pred             cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (632)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  378 (632)
                      .+.++..++++++.+++..  .+..+ ++|++|++++|.++...  .+ +.+++|++|++++|++++..+  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence            4556778889999988755  35555 89999999999998754  33 679999999999999998766  89999999


Q ss_pred             EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752          379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE  458 (632)
Q Consensus       379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls  458 (632)
                      +|++++|++++. |.                                                    +.. ++|++|+++
T Consensus        89 ~L~L~~N~l~~l-~~----------------------------------------------------~~~-~~L~~L~L~  114 (263)
T 1xeu_A           89 ELSVNRNRLKNL-NG----------------------------------------------------IPS-ACLSRLFLD  114 (263)
T ss_dssp             EEECCSSCCSCC-TT----------------------------------------------------CCC-SSCCEEECC
T ss_pred             EEECCCCccCCc-Cc----------------------------------------------------ccc-CcccEEEcc
Confidence            999999999885 33                                                    122 789999999


Q ss_pred             ccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752          459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      +|++++.  ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.+
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            9999984  4588999999999999999996 3 789999999999999999997  778899999999999999844

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=3.7e-17  Score=151.80  Aligned_cols=153  Identities=22%  Similarity=0.365  Sum_probs=88.7

Q ss_pred             cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (632)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  378 (632)
                      .+++|++|++++|.+++..  .+..+ ++|++|++++|.++...  .+ ..+++|++|++++|++++..+..++.+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            3445555555555554322  23333 55555555555444332  12 4466666666666666665556666666777


Q ss_pred             EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752          379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE  458 (632)
Q Consensus       379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls  458 (632)
                      +|++++|.+++..|.                                                   .+..+++|++|+++
T Consensus       116 ~L~Ls~n~i~~~~~~---------------------------------------------------~l~~l~~L~~L~L~  144 (197)
T 4ezg_A          116 LLDISHSAHDDSILT---------------------------------------------------KINTLPKVNSIDLS  144 (197)
T ss_dssp             EEECCSSBCBGGGHH---------------------------------------------------HHTTCSSCCEEECC
T ss_pred             EEEecCCccCcHhHH---------------------------------------------------HHhhCCCCCEEEcc
Confidence            777777766654333                                                   45566677777777


Q ss_pred             ccC-CCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          459 QTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       459 ~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      +|. +++ ++ .+..+++|++|++++|++++..  .+..+++|++|++++|++.+
T Consensus       145 ~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          145 YNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            776 544 33 4666777777777777777633  56677777777777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=2.6e-17  Score=166.14  Aligned_cols=280  Identities=16%  Similarity=0.172  Sum_probs=204.6

Q ss_pred             CCCCCEEEcCCCCCChHHHHhccC-CCCccEEEecCCCCC--chhhHhhcCCCCCcEEEccCCCCCC--CCC--------
Q 006752          163 LQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVS--NRGAAVLKMFPRLSFLNLAWTGVTK--LPN--------  229 (632)
Q Consensus       163 l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~--l~~--------  229 (632)
                      +.+++.|.++++ +.......+.. +++|+.|+|++|++.  .....   .++.++.+.+..+.+..  +.+        
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g   99 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVPAYAFSNVVNGVTKG   99 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccCHHHhcccccccccc
Confidence            456888888874 33333445554 889999999999887  22221   22224555555554443  456        


Q ss_pred             CCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCC----Cch--hhhhcCCC
Q 006752          230 ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL----SRF--CFLTQMKA  302 (632)
Q Consensus       230 l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l----~~~--~~l~~~~~  302 (632)
                      +++|+++++.+ .++.+++..+ +|++|+++++.+|.+..++.. .|..+.++..+.......    ..+  .++..+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            89999999998 8888887655 889999999999988877654 566777777777655321    111  34556667


Q ss_pred             CC-eeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752          303 LE-HLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (632)
Q Consensus       303 L~-~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  378 (632)
                      |+ .+.+....   ..+..+...   ..+++.+.+.++ +.......+...|++|+++++++|+++.....+|.+|++|+
T Consensus       178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cceeEEecCCC---cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            76 55555432   233333322   256788888765 44444445545699999999999999988888999999999


Q ss_pred             EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc-cccc
Q 006752          379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE-RLNL  457 (632)
Q Consensus       379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~-~L~L  457 (632)
                      .+++++| +... +.                                                  .+|.+|.+|+ .+++
T Consensus       254 ~l~l~~n-i~~I-~~--------------------------------------------------~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          254 KIKLPHN-LKTI-GQ--------------------------------------------------RVFSNCGRLAGTLEL  281 (329)
T ss_dssp             EEECCTT-CCEE-CT--------------------------------------------------TTTTTCTTCCEEEEE
T ss_pred             EEECCcc-ccee-hH--------------------------------------------------HHhhCChhccEEEEE
Confidence            9999998 6553 44                                                  2688999999 9999


Q ss_pred             CccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEee
Q 006752          458 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  505 (632)
Q Consensus       458 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  505 (632)
                      .+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus       282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99 888888899999999999999999999999999999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=3.3e-17  Score=151.31  Aligned_cols=142  Identities=16%  Similarity=0.225  Sum_probs=122.8

Q ss_pred             cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV  433 (632)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  433 (632)
                      +++++++|.++. +|..+  ..++++|++++|.+++..+..                                       
T Consensus        11 ~~l~~s~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~---------------------------------------   48 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDG---------------------------------------   48 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSC---------------------------------------
T ss_pred             CEEEcCCCCcCc-CccCC--CCCCCEEECCCCcCCccCCcc---------------------------------------
Confidence            678888888764 33323  238999999999998875542                                       


Q ss_pred             ccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       434 ~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                                 .+..+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++|++++.
T Consensus        49 -----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           49 -----------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             -----------SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             -----------ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence                       367889999999999999998899999999999999999999999888899999999999999999999


Q ss_pred             CCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          514 GLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       514 ~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      .|..|..+++|++|++++|++.+++...++..+..
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~  152 (192)
T 1w8a_A          118 MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR  152 (192)
T ss_dssp             CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred             CHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHH
Confidence            99999999999999999999999888777766543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=6.2e-16  Score=143.52  Aligned_cols=151  Identities=19%  Similarity=0.258  Sum_probs=90.7

Q ss_pred             cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (632)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (632)
                      ++++++|++++|. +.. ++ .+..+++|++|++++|. ++..  ..+..+++|++|++++| .+++..+..+.++++|+
T Consensus        43 l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~l~~n~-~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           43 MNSLTYITLANIN-VTD-LT-GIEYAHNIKDLTINNIH-ATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHTCCEEEEESSC-CSC-CT-TGGGCTTCSEEEEESCC-CSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCC
T ss_pred             cCCccEEeccCCC-ccC-hH-HHhcCCCCCEEEccCCC-CCcc--hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCC
Confidence            3456777777663 321 11 35666677777777664 4432  35666667777777766 55555556666666677


Q ss_pred             EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCC-CChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC
Q 006752          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT  222 (632)
Q Consensus       144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  222 (632)
                      +|++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+++..  .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            77777666666556666666666666666666 5443 2 4566666666666666665532  4555666666666666


Q ss_pred             CCC
Q 006752          223 GVT  225 (632)
Q Consensus       223 ~l~  225 (632)
                      .+.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=1e-16  Score=152.49  Aligned_cols=154  Identities=18%  Similarity=0.249  Sum_probs=122.6

Q ss_pred             CCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEc
Q 006752          303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI  382 (632)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L  382 (632)
                      .+.++.+++.++... ..   ..++|++|++++|.+++..+..+ +.+++|++|++++|+++...+..|..+++|++|+|
T Consensus        21 ~~~v~c~~~~l~~ip-~~---~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHASVP-AG---IPTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCSSCC-SC---CCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcCccC-CC---CCCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            456667666665322 21   22678888888888887666555 66888999999999888776677888999999999


Q ss_pred             cCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCC
Q 006752          383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV  462 (632)
Q Consensus       383 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l  462 (632)
                      ++|++++..+.                                                   .|..+++|++|+|++|++
T Consensus        96 s~N~l~~l~~~---------------------------------------------------~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           96 GTNQLTVLPSA---------------------------------------------------VFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             CSSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSSCC
T ss_pred             CCCcCCccChh---------------------------------------------------HhCcchhhCeEeccCCcc
Confidence            99999876444                                                   456788999999999999


Q ss_pred             CCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          463 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       463 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      +. +|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       125 ~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          125 TE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            85 678888899999999999999988778889999999999999988753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.6e-16  Score=146.75  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=120.6

Q ss_pred             cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV  433 (632)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  433 (632)
                      +.++++++.++.. |..+  .++|++|++++|.++. +|.                                        
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~-ip~----------------------------------------   48 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTL-VPK----------------------------------------   48 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCS-CCG----------------------------------------
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCch-hHH----------------------------------------
Confidence            5677888877643 3222  3578899999998874 343                                        


Q ss_pred             ccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752          434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       434 ~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                                 .|.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|++++.
T Consensus        49 -----------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  117 (193)
T 2wfh_A           49 -----------ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV  117 (193)
T ss_dssp             -----------GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             -----------HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence                       577889999999999999998888899999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          514 GLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       514 ~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      .+..|..+++|+.|++++|++.|+|.+.++..+..
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~  152 (193)
T 2wfh_A          118 PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK  152 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             ChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence            88889999999999999999999998888777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=6.3e-18  Score=182.19  Aligned_cols=84  Identities=21%  Similarity=0.288  Sum_probs=41.8

Q ss_pred             cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCC-CCCCCCCCCcce
Q 006752          448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKL  526 (632)
Q Consensus       448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~l~~~~~L~~  526 (632)
                      .+++|+.|+|++|.++. +|..|+.+++|+.|+|++|+|++ +| .++.+++|+.|++++|++++.. |..+..+++|+.
T Consensus       461 ~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            34445555555555542 34445555555555555555554 23 4445555555555555555544 444555555555


Q ss_pred             EecCCCcc
Q 006752          527 LDLHGGWL  534 (632)
Q Consensus       527 L~l~~N~l  534 (632)
                      |++++|++
T Consensus       538 L~L~~N~l  545 (567)
T 1dce_A          538 LNLQGNSL  545 (567)
T ss_dssp             EECTTSGG
T ss_pred             EEecCCcC
Confidence            55555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=4.5e-16  Score=173.09  Aligned_cols=196  Identities=16%  Similarity=0.139  Sum_probs=119.5

Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      +++.|.+. ..+..+..++.|+.|+|++|.+.. +|.                                           
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~-------------------------------------------  241 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISA-------------------------------------------  241 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCSC-CCG-------------------------------------------
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCCC-CCh-------------------------------------------
Confidence            33444444 457778899999999999999985 454                                           


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  516 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  516 (632)
                              .+.++++|++|+|++|.|+ .+|..|+.+++|++|+|++|+|+. +|..|..+++|++|+|++|.|+. +|.
T Consensus       242 --------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-lp~  310 (727)
T 4b8c_D          242 --------NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPW  310 (727)
T ss_dssp             --------GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCC-CCS
T ss_pred             --------hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCc-cCh
Confidence                    2347889999999999999 588899999999999999999995 68899999999999999999985 588


Q ss_pred             CCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhhhc----ccCCCCCCC
Q 006752          517 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVK----QKQDPMPMS  592 (632)
Q Consensus       517 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~~n----~~~~~~~~~  592 (632)
                      .|..+++|++|+|++|++ .+..+..+.....       ......++.|.++|.+|..+..+....|    ...|.++-.
T Consensus       311 ~~~~l~~L~~L~L~~N~l-~~~~p~~~~~~~~-------~~~~l~l~~N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~  382 (727)
T 4b8c_D          311 EFGNLCNLQFLGVEGNPL-EKQFLKILTEKSV-------TGLIFYLRDNRPEIPLPHERRFIEINTDGEPQREYDSLQQS  382 (727)
T ss_dssp             STTSCTTCCCEECTTSCC-CSHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCC----------------------
T ss_pred             hhhcCCCccEEeCCCCcc-CCCChHHHhhcch-------hhhHHhhccCcccCcCccccceeEeecccccccccCCcccc
Confidence            899999999999999998 5444444433221       1123457789999999999988875544    222322111


Q ss_pred             ccchhcccccCHHHHHHhhccccccc
Q 006752          593 HSFLDQRLKYSREELLELQYSSLSLA  618 (632)
Q Consensus       593 ~~~~~~~~~~~~~~~l~l~~n~l~g~  618 (632)
                      ..  ..........+..+++|.+.+.
T Consensus       383 ~~--~~~~~l~~~~~~~ls~Nil~~~  406 (727)
T 4b8c_D          383 TE--HLATDLAKRTFTVLSYNTLCQH  406 (727)
T ss_dssp             ---------------------CCCGG
T ss_pred             cc--chhhcccccceeeeeccccccc
Confidence            10  0011233556788899998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=4.2e-17  Score=175.73  Aligned_cols=195  Identities=15%  Similarity=0.171  Sum_probs=154.0

Q ss_pred             hcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCC-------------CCchHHHHHHhcCCCCcEEE-ccCCcCcc
Q 006752          276 IETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSM-------------IGDDSVEMVACVGANLRNLN-LSNTRFSS  340 (632)
Q Consensus       276 ~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~~~L~~L~-l~~n~l~~  340 (632)
                      ..++.|+.|++++|.++.+ ..++.+++|+.|++++|.             ..+..|..+..+ ++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhcccch
Confidence            4578899999999998877 678888899999987664             455666777776 7888888 66664433


Q ss_pred             hhH--------HHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhce
Q 006752          341 AGV--------GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLF  412 (632)
Q Consensus       341 ~~~--------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~  412 (632)
                      ...        ..+  ....|+.|++++|.+++. |. ++.+++|+.|++++|.++ .+|.                   
T Consensus       425 L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~-------------------  480 (567)
T 1dce_A          425 LRSKFLLENSVLKM--EYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPP-------------------  480 (567)
T ss_dssp             HHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCG-------------------
T ss_pred             hhhhhhhccccccc--CccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccch-------------------
Confidence            211        111  123688999999998874 44 888999999999999988 4465                   


Q ss_pred             eccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcc-h
Q 006752          413 LHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-L  491 (632)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~  491 (632)
                                                      .++++++|++|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |
T Consensus       481 --------------------------------~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p  526 (567)
T 1dce_A          481 --------------------------------ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI  526 (567)
T ss_dssp             --------------------------------GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             --------------------------------hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc
Confidence                                            57788999999999999998 56 8999999999999999999987 9


Q ss_pred             hhhccCCCCcEEeecCceeccCCCCC---CCCCCCcceEec
Q 006752          492 HQLSSLSKLTNLSIRDAVLTNSGLGS---FKPPRSLKLLDL  529 (632)
Q Consensus       492 ~~~~~l~~L~~L~ls~N~l~~~~~~~---l~~~~~L~~L~l  529 (632)
                      ..+..+++|+.|++++|++++..+..   +..+++|+.|++
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999999999999975532   223688888864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.4e-15  Score=136.99  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=115.6

Q ss_pred             CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ  432 (632)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (632)
                      .+.+++++++++... .  ...++|++|++++|++++..+.                                       
T Consensus         9 ~~~l~~~~~~l~~~p-~--~~~~~l~~L~l~~n~l~~~~~~---------------------------------------   46 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-T--GIPSSATRLELESNKLQSLPHG---------------------------------------   46 (177)
T ss_dssp             TTEEECCSSCCSSCC-T--TCCTTCSEEECCSSCCCCCCTT---------------------------------------
T ss_pred             CCEEEecCCCCccCC-C--CCCCCCcEEEeCCCcccEeCHH---------------------------------------
Confidence            467788888776533 2  2346899999999998875443                                       


Q ss_pred             cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                                  .+.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus        47 ------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           47 ------------VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             ------------TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ------------HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence                        45678899999999999998777778999999999999999999888889999999999999999998


Q ss_pred             CCCCCCCCCCCcceEecCCCcccChHH-HHHHHHH
Q 006752          513 SGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKM  546 (632)
Q Consensus       513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~-~~~~~~~  546 (632)
                      ..+..+..+++|++|++++|++.+.+. +.++..+
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~  149 (177)
T 2o6r_A          115 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  149 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             eCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence            877778889999999999999988775 4444333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.2e-16  Score=140.71  Aligned_cols=87  Identities=25%  Similarity=0.277  Sum_probs=40.7

Q ss_pred             cCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeecCceeccCCC---CCCCCCCC
Q 006752          448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRS  523 (632)
Q Consensus       448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~---~~l~~~~~  523 (632)
                      .+++|++|++++|.+++..|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..+   ..+..+++
T Consensus        69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred             cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence            34445555555555444434444444455555555555544321 344445555555555555544332   24444455


Q ss_pred             cceEecCCCcc
Q 006752          524 LKLLDLHGGWL  534 (632)
Q Consensus       524 L~~L~l~~N~l  534 (632)
                      |++|++++|.+
T Consensus       149 L~~L~l~~n~~  159 (168)
T 2ell_A          149 LTYLDGYDRED  159 (168)
T ss_dssp             CCEETTEETTS
T ss_pred             CcEecCCCCCh
Confidence            55555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.6e-16  Score=138.03  Aligned_cols=127  Identities=23%  Similarity=0.335  Sum_probs=79.2

Q ss_pred             CCCcEEEccCCCCC-hHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752          351 PNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF  429 (632)
Q Consensus       351 ~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (632)
                      ++|++|++++|.++ +..|..+..+++|++|++++|.+++.  .                                    
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------------------------------   58 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------------------------------   58 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------------------------------
Confidence            45666666666665 34444555666666666666666554  1                                    


Q ss_pred             hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCc-chhhhccCCCCcEEeecCc
Q 006752          430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDA  508 (632)
Q Consensus       430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ls~N  508 (632)
                                     .+..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|
T Consensus        59 ---------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           59 ---------------NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ---------------TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             ---------------hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence                           244556666777777766665555555566677777777766663 2356666677777777777


Q ss_pred             eeccCCC---CCCCCCCCcceEecC
Q 006752          509 VLTNSGL---GSFKPPRSLKLLDLH  530 (632)
Q Consensus       509 ~l~~~~~---~~l~~~~~L~~L~l~  530 (632)
                      ++++..+   ..+..+++|+.||++
T Consensus       124 ~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          124 EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cccchHHHHHHHHHHCCCcccccCC
Confidence            7666544   355666667776665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.1e-15  Score=138.06  Aligned_cols=134  Identities=28%  Similarity=0.330  Sum_probs=105.8

Q ss_pred             CCCcEEEccCCcCc-chhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752          326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC  404 (632)
Q Consensus       326 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  404 (632)
                      ++|++|++++|.++ +..+..+ ..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|.           
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-----------   89 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-----------   89 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred             ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-----------
Confidence            56788888888776 3334333 5678888888888888765  5677888999999999988876444           


Q ss_pred             hhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcc-ccccCccccccccccc
Q 006752          405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRN  483 (632)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~  483 (632)
                                                              .+..+++|++|++++|.+++... ..+..+++|++|++++
T Consensus        90 ----------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           90 ----------------------------------------LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             ----------------------------------------HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             ----------------------------------------HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence                                                    45668899999999999988532 6788889999999999


Q ss_pred             ccCCCcch---hhhccCCCCcEEeecCceeccC
Q 006752          484 ASLTDVSL---HQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       484 n~l~~~~~---~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      |.+++..+   ..+..+++|++|++++|.+...
T Consensus       130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99988665   5788899999999999988764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=3.3e-15  Score=137.89  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      |.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            3445555555555555555555555555555555555555555555555555555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.55  E-value=1.1e-15  Score=156.02  Aligned_cols=187  Identities=17%  Similarity=0.178  Sum_probs=93.9

Q ss_pred             CCCCeeeccCCCCCchHHHHHHhc----CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHh----
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS----  372 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----  372 (632)
                      +.|+.|++++|.+++.....+...    +++|++|++++|.+++.....++..+++|++|++++|.+++.....++    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            445555555555554444433332    135566666666655554444444455566666666666555444442    


Q ss_pred             -cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCc
Q 006752          373 -MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNH  451 (632)
Q Consensus       373 -~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~  451 (632)
                       ..++|++|+|++|.++......+.                                               ..+..+++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------------------------------~~L~~~~~  184 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLM-----------------------------------------------EGLAGNTS  184 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHH-----------------------------------------------HHHHTCSS
T ss_pred             hcCCccceeeCCCCCCChHHHHHHH-----------------------------------------------HHHhcCCC
Confidence             245566666666655432111000                                               13344556


Q ss_pred             ccccccCccCCCCCc----cccccCcccccccccccccCCCcch----hhhccCCCCcEEeecCceeccCCCCCCCCC--
Q 006752          452 LERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP--  521 (632)
Q Consensus       452 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~--  521 (632)
                      |++|+|++|.+++..    +..+...++|++|+|++|.|++...    ..+..+++|++|+|++|.|+......+...  
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~  264 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG  264 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhc
Confidence            666666666665432    2334445566666666666665332    233455667777777776665544333222  


Q ss_pred             -C--CcceEe--cCCCcc
Q 006752          522 -R--SLKLLD--LHGGWL  534 (632)
Q Consensus       522 -~--~L~~L~--l~~N~l  534 (632)
                       .  .|+.+.  +..|.+
T Consensus       265 ~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          265 AAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             -----CEEECCCC----C
T ss_pred             CCCccchhhHhhhcCCcc
Confidence             1  166666  666665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=1.1e-14  Score=150.79  Aligned_cols=334  Identities=15%  Similarity=0.184  Sum_probs=161.1

Q ss_pred             CCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHH
Q 006752          103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR  182 (632)
Q Consensus       103 i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  182 (632)
                      ++..+..+|.+|.+|+.+.+..  .++..+..+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            4445566777888888888865  356666677777788888877654 44444556777777776655433 2222334


Q ss_pred             hccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEe
Q 006752          183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISL  261 (632)
Q Consensus       183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l  261 (632)
                      +|.++..++......  +......+|..+++|+.+.+..+                    +..++...+ .+.+|+.+.+
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--------------------~~~I~~~~F~~c~~L~~i~l  192 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--------------------METLHNGLFSGCGKLKSIKL  192 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCTTCCBCCC
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--------------------cceeccccccCCCCceEEEc
Confidence            444443332222211  12222334555555555544332                    112222222 3444444444


Q ss_pred             eCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752          262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA  341 (632)
Q Consensus       262 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  341 (632)
                      ..+ +..+. ...+..+..|+.+.+..+...-......+..|+.+.+... ++......+..+ ..++.+.+..+... .
T Consensus       193 ~~~-~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~~-i  267 (394)
T 4fs7_A          193 PRN-LKIIR-DYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKLR-I  267 (394)
T ss_dssp             CTT-CCEEC-TTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTCE-E
T ss_pred             CCC-ceEeC-chhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcce-e
Confidence            332 11111 1133344444444443332211122222344444444332 111111122222 44555555443211 1


Q ss_pred             hHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccc
Q 006752          342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF  421 (632)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (632)
                      ....+ ..++.++.+....+.+..   .+|..+.+|+.+.+..+ +... +.                            
T Consensus       268 ~~~~F-~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I-~~----------------------------  313 (394)
T 4fs7_A          268 GGSLF-YNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFI-GE----------------------------  313 (394)
T ss_dssp             CSCTT-TTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEE-CT----------------------------
T ss_pred             ecccc-ccccccceeccCceeecc---ccccccccccccccccc-ccee-ch----------------------------
Confidence            11111 345555555554443321   23455566666655433 2221 11                            


Q ss_pred             ccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCc
Q 006752          422 PSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT  501 (632)
Q Consensus       422 ~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  501 (632)
                                            .+|.+|.+|+.++|.++ ++.+...+|.++++|+.+++..+ ++.+...+|.+|++|+
T Consensus       314 ----------------------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          314 ----------------------EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             ----------------------TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ----------------------hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence                                  25666677777777543 55555566767777777777655 5555566677777777


Q ss_pred             EEeecCceeccCCCCCCCCCCCcceE
Q 006752          502 NLSIRDAVLTNSGLGSFKPPRSLKLL  527 (632)
Q Consensus       502 ~L~ls~N~l~~~~~~~l~~~~~L~~L  527 (632)
                      .+++..+ ++.. ...|.++++|+.+
T Consensus       370 ~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             EEEECCC-CEEh-hheecCCCCCcEE
Confidence            7777654 2221 3456666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.1e-14  Score=128.51  Aligned_cols=128  Identities=25%  Similarity=0.335  Sum_probs=95.9

Q ss_pred             CCCccEEEcCCCCCCC-chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCC
Q 006752           89 FRYLRSLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS  167 (632)
Q Consensus        89 ~~~L~~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  167 (632)
                      .++|++|++++|. ++ ...+..+..+++|++|++++| .++..  ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            3567777777776 55 334445667778888888887 55554  6677788888888888888776677777788888


Q ss_pred             EEEcCCCCCChH-HHHhccCCCCccEEEecCCCCCchhh---HhhcCCCCCcEEEcc
Q 006752          168 VLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGA---AVLKMFPRLSFLNLA  220 (632)
Q Consensus       168 ~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~  220 (632)
                      +|++++|.+++. .+..++.+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888888888774 34678888888888888888877655   567888888888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=5.7e-14  Score=144.66  Aligned_cols=264  Identities=10%  Similarity=0.141  Sum_probs=166.3

Q ss_pred             CCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCC
Q 006752          187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF  266 (632)
Q Consensus       187 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~  266 (632)
                      +..++.+.+.. .++.....+|.++ +|+.+.+..+                    ++.+....+...+|+++.+.. .+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--------------------i~~I~~~aF~~~~L~~i~lp~-~l  168 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--------------------LKSIGDMAFFNSTVQEIVFPS-TL  168 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--------------------CCEECTTTTTTCCCCEEECCT-TC
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--------------------ccEECHHhcCCCCceEEEeCC-Cc
Confidence            35555555543 2344444455543 4555555443                    333333333223445544443 23


Q ss_pred             CchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHH
Q 006752          267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG  344 (632)
Q Consensus       267 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  344 (632)
                      ..+... .|..|.+|+.+++++|.++.+  .+|. +.+|+.+.+..+ +......+|..+ ++|+.+++..+ ++.....
T Consensus       169 ~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~  243 (401)
T 4fdw_A          169 EQLKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQE  243 (401)
T ss_dssp             CEECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTT
T ss_pred             cEehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccc
Confidence            332221 344555555555555555544  2333 355666666533 443444444444 56666666553 3434444


Q ss_pred             HHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccc----cCCCccchhhhhhhhhhhhhceeccccccc
Q 006752          345 ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM----YPSGQMNVFFSAYCFMIVYNLFLHAYGYVI  420 (632)
Q Consensus       345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (632)
                      .| .. .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+...    ++.                           
T Consensus       244 aF-~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~---------------------------  293 (401)
T 4fdw_A          244 AF-RE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP---------------------------  293 (401)
T ss_dssp             TT-TT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT---------------------------
T ss_pred             cc-cc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH---------------------------
Confidence            44 22 578888874 446656667788888888888887766511    222                           


Q ss_pred             cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC
Q 006752          421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  500 (632)
Q Consensus       421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  500 (632)
                                             .+|.+|++|+.++|. +.++.+...+|.++++|+.+.|..+ ++.+...+|.++ +|
T Consensus       294 -----------------------~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L  347 (401)
T 4fdw_A          294 -----------------------YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI  347 (401)
T ss_dssp             -----------------------TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred             -----------------------HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence                                   368899999999999 4588878889999999999999655 777788899999 99


Q ss_pred             cEEeecCceeccCCCCCCCCC-CCcceEecCCCcc
Q 006752          501 TNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWL  534 (632)
Q Consensus       501 ~~L~ls~N~l~~~~~~~l~~~-~~L~~L~l~~N~l  534 (632)
                      +.+++++|.+.......|.++ ..++.|++..+.+
T Consensus       348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            999999999988888888888 4789999988875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=132.19  Aligned_cols=128  Identities=23%  Similarity=0.238  Sum_probs=104.7

Q ss_pred             cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhh
Q 006752          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV  408 (632)
Q Consensus       329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~  408 (632)
                      +.++++++.++....    +-.++|++|++++|.++. +|..|..+++|++|++++|.+++..+.               
T Consensus        13 ~~l~~~~~~l~~ip~----~~~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~---------------   72 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK----GIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQ---------------   72 (193)
T ss_dssp             TEEECTTSCCSSCCS----CCCTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTT---------------
T ss_pred             CEEEcCCCCCCcCCC----CCCCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHh---------------
Confidence            467777777664332    124578888888888874 446788899999999999999886554               


Q ss_pred             hhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752          409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  488 (632)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  488 (632)
                                                          .|.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++
T Consensus        73 ------------------------------------~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           73 ------------------------------------SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             ------------------------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             ------------------------------------HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence                                                46778899999999999999888889999999999999999998


Q ss_pred             cchhhhccCCCCcEEeecCceecc
Q 006752          489 VSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       489 ~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      ..+..|..+++|+.|++++|++..
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          117 VPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             eChhhhhcCccccEEEeCCCCeec
Confidence            877789999999999999998874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=2.3e-14  Score=130.38  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=101.3

Q ss_pred             CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI  407 (632)
Q Consensus       328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  407 (632)
                      .+.+++++++++....    +..++|++|++++|++++..+..+..+++|++|++++|.+++..+.              
T Consensus         9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------   70 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG--------------   70 (177)
T ss_dssp             TTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred             CCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------------
Confidence            4567777777665432    2346788888888888776666677888888888888888865443              


Q ss_pred             hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                                                           .+.++++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus        71 -------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           71 -------------------------------------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             -------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             -------------------------------------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence                                                 3567788888999988888877777788888999999999888


Q ss_pred             CcchhhhccCCCCcEEeecCceeccC
Q 006752          488 DVSLHQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       488 ~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      +..+..+..+++|++|++++|++++.
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          114 SVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EeCHHHhcCCcccCEEEecCCCeecc
Confidence            87777778888899999998888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.49  E-value=2.9e-14  Score=147.55  Aligned_cols=324  Identities=12%  Similarity=0.139  Sum_probs=208.9

Q ss_pred             HHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCC
Q 006752           84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL  163 (632)
Q Consensus        84 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l  163 (632)
                      .+|.+|.+|+++.+.. . ++.....+|.+|++|+.+++..+  ++..+..+|.++..|+.+.+..+ +......+|.++
T Consensus        65 ~AF~~c~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-T-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEEEEECCT-T-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHhhCCCCceEEEeCC-C-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            5688999999999975 3 77788889999999999999864  56677788899999999888754 444455678777


Q ss_pred             CCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCC-----CCCCCCCCCEEEC
Q 006752          164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLNL  238 (632)
Q Consensus       164 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~l~~l~~L~~L~L  238 (632)
                      ..++........  .....+|.++++|+.+.+..+ +......+|..+++|+.+.+..+ +.     .+.++..|+.+.+
T Consensus       140 ~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          140 DFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             cccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            655544444333  223467899999999999765 34455667888888888888665 22     2445566666655


Q ss_pred             CCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHH
Q 006752          239 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV  318 (632)
Q Consensus       239 ~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~  318 (632)
                      ..+.. .+....+.+.+|+.+.+... ...+..                       ..+..+..++.+.+..+... ...
T Consensus       216 ~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~-----------------------~~f~~~~~l~~~~~~~~~~~-i~~  269 (394)
T 4fs7_A          216 PNSLY-YLGDFALSKTGVKNIIIPDS-FTELGK-----------------------SVFYGCTDLESISIQNNKLR-IGG  269 (394)
T ss_dssp             CTTCC-EECTTTTTTCCCCEEEECTT-CCEECS-----------------------STTTTCSSCCEEEECCTTCE-ECS
T ss_pred             CCCce-EeehhhcccCCCceEEECCC-ceeccc-----------------------ccccccccceeEEcCCCcce-eec
Confidence            44322 22333344555555555432 111111                       23444445555555443211 111


Q ss_pred             HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccch
Q 006752          319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNV  398 (632)
Q Consensus       319 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~  398 (632)
                      ..+... ..++.+......+...   . +..|.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ ++.. +.     
T Consensus       270 ~~F~~~-~~l~~~~~~~~~i~~~---~-F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~-----  336 (394)
T 4fs7_A          270 SLFYNC-SGLKKVIYGSVIVPEK---T-FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI-GK-----  336 (394)
T ss_dssp             CTTTTC-TTCCEEEECSSEECTT---T-TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-CT-----
T ss_pred             cccccc-cccceeccCceeeccc---c-ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE-hH-----
Confidence            222222 5555555554432221   1 245778888887654 55555667888888888888643 4332 22     


Q ss_pred             hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccc
Q 006752          399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH  478 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  478 (632)
                                                                   .+|.+|.+|+.+++..+ ++.+...+|.+|++|+.
T Consensus       337 ---------------------------------------------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          337 ---------------------------------------------RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             ---------------------------------------------TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             ---------------------------------------------HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence                                                         26788888999988776 77767788888999999


Q ss_pred             cccccccCCCcchhhhccCCCCcEE
Q 006752          479 LSLRNASLTDVSLHQLSSLSKLTNL  503 (632)
Q Consensus       479 L~Ls~n~l~~~~~~~~~~l~~L~~L  503 (632)
                      +++..+ ++. +..+|.++++|+++
T Consensus       371 i~lp~~-~~~-~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          371 VELPKR-LEQ-YRYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred             EEECCC-CEE-hhheecCCCCCcEE
Confidence            988765 222 34578888888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=8.3e-15  Score=133.17  Aligned_cols=130  Identities=22%  Similarity=0.243  Sum_probs=96.8

Q ss_pred             cCCCCcEEEccCCCCChHHHHHHhcC-CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccccccc
Q 006752          349 HLPNLEILSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLA  427 (632)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (632)
                      .+++|++|++++|+++.. +. +..+ ++|++|++++|.+++.  .                                  
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~----------------------------------   58 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--D----------------------------------   58 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--C----------------------------------
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--c----------------------------------
Confidence            456778888888877743 32 4433 4888888888888764  2                                  


Q ss_pred             chhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeec
Q 006752          428 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIR  506 (632)
Q Consensus       428 ~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls  506 (632)
                                       .+..+++|++|++++|.+++..+..+..+++|++|++++|+++...+ ..+..+++|+.|+++
T Consensus        59 -----------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           59 -----------------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             -----------------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             -----------------ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence                             25567888888888888887544555788888888888888876432 378888889999999


Q ss_pred             CceeccCCCC----CCCCCCCcceEecCCCcc
Q 006752          507 DAVLTNSGLG----SFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       507 ~N~l~~~~~~----~l~~~~~L~~L~l~~N~l  534 (632)
                      +|+++.. |.    .+..+++|+.||+++|..
T Consensus       122 ~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          122 RNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence            9988865 44    377788899999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=9.2e-14  Score=125.26  Aligned_cols=95  Identities=24%  Similarity=0.243  Sum_probs=87.2

Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEec
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL  529 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l  529 (632)
                      ++|++|+|++|++++..+..|..+++|++|+|++|+|+++.+..|..+++|++|++++|+|++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            68999999999999988999999999999999999999988888999999999999999999988888999999999999


Q ss_pred             CCCcccChHH-HHHHH
Q 006752          530 HGGWLLTEDA-ILQFC  544 (632)
Q Consensus       530 ~~N~l~~~~~-~~~~~  544 (632)
                      ++|++.|.+. +.++.
T Consensus       110 ~~N~~~c~c~~l~~l~  125 (170)
T 3g39_A          110 LNNPWDCACSDILYLS  125 (170)
T ss_dssp             CSSCBCTTBGGGHHHH
T ss_pred             CCCCCCCCchhHHHHH
Confidence            9999988874 44433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.4e-14  Score=160.96  Aligned_cols=176  Identities=9%  Similarity=0.051  Sum_probs=93.2

Q ss_pred             hHhhcCCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCC
Q 006752          205 AAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL  280 (632)
Q Consensus       205 ~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  280 (632)
                      +..+..++.|+.|+|++|.+..++    .+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..  +..+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--LGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--GGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--hcCCCC
Confidence            334444555555555555544433    35666667777777777777777777777777777777766543  346777


Q ss_pred             ccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752          281 LSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS  359 (632)
Q Consensus       281 L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  359 (632)
                      |++|+|++|.++.+ ..+..+++|++|+|++|.+++..|..+.........+++++|.+++..+       ..|+.|+++
T Consensus       295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~  367 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEIN  367 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC-------
T ss_pred             CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEee
Confidence            88888888877766 4578888899999999999888887776542223346788888876433       356677777


Q ss_pred             CC--------CCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          360 GT--------QIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       360 ~n--------~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      +|        .+.+..+..+..+..+....+++|-+.+
T Consensus       368 ~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          368 TDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ----------------------------------CCCG
T ss_pred             cccccccccCCccccccchhhcccccceeeeecccccc
Confidence            66        3334444445566667777788887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=1.4e-13  Score=141.75  Aligned_cols=238  Identities=14%  Similarity=0.193  Sum_probs=178.1

Q ss_pred             CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeec
Q 006752          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL  308 (632)
Q Consensus       231 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l  308 (632)
                      ..++.+.+.. .++.++...+...+|+.+.+..+ +..+... +|..+ +|+.+.+.. .+..+  .+|..|++|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTT-TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHH-hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            4566666654 45666666664457999988766 5555443 45554 688888876 56555  67888889999999


Q ss_pred             cCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccc
Q 006752          309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  388 (632)
Q Consensus       309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~  388 (632)
                      +.|.++......+. . .+|+.+.+..+ +.......| ..|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++
T Consensus       188 ~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          188 SKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             TTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTTTT-TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             CCCcceEechhhEe-e-cccCEEEeCCc-hheehhhHh-hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            88888766555554 3 78888888754 555555555 56888888888765 55555566666 678888884 3344


Q ss_pred             cccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC-----
Q 006752          389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----  463 (632)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~-----  463 (632)
                      .. +.                                                  .+|.+|++|+.+++.+|.+.     
T Consensus       261 ~I-~~--------------------------------------------------~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          261 NI-AS--------------------------------------------------RAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             EE-CT--------------------------------------------------TTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             EE-Ch--------------------------------------------------hHhhCCCCCCEEEeCCccccCCccc
Confidence            33 22                                                  36889999999999998775     


Q ss_pred             CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      .....+|.+|++|+.++|. +.++.+...+|.+|++|+.+++.+| ++.+...+|.++ +|+.+++++|..
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            4567889999999999999 5588888889999999999999665 888888999999 999999999975

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=2.5e-14  Score=130.02  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhh
Q 006752          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCF  405 (632)
Q Consensus       326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  405 (632)
                      ++|++|++++|+++.. + .+....++|++|++++|.+++.  ..+..+++|++|++++|.+++..+.            
T Consensus        19 ~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------   82 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG------------   82 (176)
T ss_dssp             TSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC------------
T ss_pred             CCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc------------
Confidence            4566666666665543 1 1223344777777777777654  4567778888888888888765333            


Q ss_pred             hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccc--cccCccccccccccc
Q 006752          406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF--PLSTFKELIHLSLRN  483 (632)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~  483 (632)
                                                             .+..+++|++|++++|.++. +|.  .+..+++|+.|++++
T Consensus        83 ---------------------------------------~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           83 ---------------------------------------LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             ---------------------------------------HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCS
T ss_pred             ---------------------------------------hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecC
Confidence                                                   35677788888888888866 343  677788888888888


Q ss_pred             ccCCCcchh---hhccCCCCcEEeecCceecc
Q 006752          484 ASLTDVSLH---QLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       484 n~l~~~~~~---~~~~l~~L~~L~ls~N~l~~  512 (632)
                      |.++...+.   .+..+++|+.||+++|.+..
T Consensus       123 N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          123 NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             SGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            888764322   47788888888888887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=8.8e-16  Score=142.62  Aligned_cols=129  Identities=24%  Similarity=0.251  Sum_probs=86.2

Q ss_pred             hcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccccccc
Q 006752          348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLA  427 (632)
Q Consensus       348 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (632)
                      +.+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|.                                  
T Consensus        45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~----------------------------------   87 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IEN----------------------------------   87 (198)
T ss_dssp             HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSS----------------------------------
T ss_pred             hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccc----------------------------------
Confidence            457777777777777665 33 56677777777777777764 343                                  


Q ss_pred             chhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeec
Q 006752          428 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIR  506 (632)
Q Consensus       428 ~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls  506 (632)
                                       .+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus        88 -----------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           88 -----------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             -----------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             -----------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence                             24445677777777777776 33 56677777777777777776443 467777777777777


Q ss_pred             CceeccCCCCC----------CCCCCCcceEecCCCcc
Q 006752          507 DAVLTNSGLGS----------FKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       507 ~N~l~~~~~~~----------l~~~~~L~~L~l~~N~l  534 (632)
                      +|++++..|..          +..+++|+.||  +|++
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            77776654442          55667777766  5554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=3.1e-13  Score=137.77  Aligned_cols=162  Identities=19%  Similarity=0.220  Sum_probs=112.2

Q ss_pred             HhhcCcccEEeccCCCCCCHHHHHHhc-----cCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCCChhhHh
Q 006752           61 EVFKHNAEAIELRGENSVDAEWMAYLG-----AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMK  134 (632)
Q Consensus        61 ~~~~~~l~~L~Ls~~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~  134 (632)
                      ....+.+++|+|++|. ++......+.     ..++|++|+|++|. +++.....+. .+++|++|+|++| .+++.+..
T Consensus        68 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~  144 (372)
T 3un9_A           68 AEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACK  144 (372)
T ss_dssp             HHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHH
T ss_pred             HHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHH
Confidence            3345678899999884 5544333332     23689999999888 7777666665 5678889999988 78877766


Q ss_pred             hhc-----CCCCccEEEccCCCCCHhHH----HHhcCCCCCCEEEcCCCCCChHH----HHhccCCCCccEEEecCCCCC
Q 006752          135 HLL-----SISTLEKLWLSETGLTADGI----ALLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVS  201 (632)
Q Consensus       135 ~l~-----~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~  201 (632)
                      .++     ..++|++|+|++|.++....    ..+..+++|++|+|++|.+++..    +..+...++|++|++++|.++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            663     46788888888888876443    34467888888888888887654    445566778888888888887


Q ss_pred             chhhHh----hcCCCCCcEEEccCCCCC
Q 006752          202 NRGAAV----LKMFPRLSFLNLAWTGVT  225 (632)
Q Consensus       202 ~~~~~~----l~~l~~L~~L~l~~n~l~  225 (632)
                      +.....    +...++|++|++++|.++
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            654433    334455555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=2.8e-13  Score=122.50  Aligned_cols=90  Identities=22%  Similarity=0.238  Sum_probs=84.5

Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEec
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL  529 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l  529 (632)
                      ++|++|+|++|++++..|..|..+++|++|+|++|+|+++.+..|..+++|++|++++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            68999999999999988999999999999999999999988878899999999999999999987777999999999999


Q ss_pred             CCCcccChHH
Q 006752          530 HGGWLLTEDA  539 (632)
Q Consensus       530 ~~N~l~~~~~  539 (632)
                      ++|++.+.+.
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999988774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.2e-15  Score=139.86  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=111.4

Q ss_pred             hhcCCCCCeeeccCCCCCchHHH------HHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 006752          297 LTQMKALEHLDLSSSMIGDDSVE------MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (632)
Q Consensus       297 l~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (632)
                      +.....++.++++.+.+.+..+.      .+..+ ++|++|++++|++++..  .+ ..+++|++|++++|.++. +|..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n~l~~-l~~~   88 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEKIS--SL-SGMENLRILSLGRNLIKK-IENL   88 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHT-TTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEEEECS-CSSH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcC-CCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCCCccc-ccch
Confidence            34445555555555555544333      66666 88888888888887743  33 567888888888888773 4555


Q ss_pred             HhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCC
Q 006752          371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN  450 (632)
Q Consensus       371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~  450 (632)
                      +..+++|++|++++|++++. |                                                    .+..++
T Consensus        89 ~~~~~~L~~L~L~~N~l~~l-~----------------------------------------------------~~~~l~  115 (198)
T 1ds9_A           89 DAVADTLEELWISYNQIASL-S----------------------------------------------------GIEKLV  115 (198)
T ss_dssp             HHHHHHCSEEEEEEEECCCH-H----------------------------------------------------HHHHHH
T ss_pred             hhcCCcCCEEECcCCcCCcC-C----------------------------------------------------ccccCC
Confidence            66678888888888888763 2                                                    356677


Q ss_pred             cccccccCccCCCCCcc-ccccCcccccccccccccCCCcchh----------hhccCCCCcEEeecCceecc
Q 006752          451 HLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLH----------QLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       451 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~ls~N~l~~  512 (632)
                      +|++|++++|.+++..+ ..+..+++|++|++++|.+++..|.          .+..+++|+.||  +|.++.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            88888888888887433 4677888899999999888776554          378899999887  666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.36  E-value=2.4e-12  Score=133.08  Aligned_cols=330  Identities=12%  Similarity=0.155  Sum_probs=164.1

Q ss_pred             hHHhhhCCC-CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCC---CCHhHHHHhcCCCCCCEEEcCCCCCChHHHH
Q 006752          107 ALWALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG---LTADGIALLSSLQNLSVLDLGGLPVTDLVLR  182 (632)
Q Consensus       107 ~~~~l~~l~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  182 (632)
                      +..+|.+++ .|+.+.+..  .++..+..+|.+|.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ +......
T Consensus        55 g~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             CHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence            344555553 366666654  2455555556666666666665442   33333445555555555544332 2222233


Q ss_pred             hccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEee
Q 006752          183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLA  262 (632)
Q Consensus       183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~  262 (632)
                      +|..+.+|+.+.+..+ +.......|..+..|+.+.+..+                    +..+....+....|+.+.+.
T Consensus       132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------~~~I~~~aF~~~~l~~i~ip  190 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------VTAIEERAFTGTALTQIHIP  190 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCCCSEEEEC
T ss_pred             hhhhhcccccccccce-eeeecccceecccccccccccce--------------------eeEeccccccccceeEEEEC
Confidence            4455555555555432 22233334444444444443321                    23333334444455555554


Q ss_pred             CCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcc
Q 006752          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS  340 (632)
Q Consensus       263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  340 (632)
                      .+.. .+ ....+..+..+.............  ..+.............           ... ..+..+.+.. .++.
T Consensus       191 ~~~~-~i-~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~ip~-~v~~  255 (394)
T 4gt6_A          191 AKVT-RI-GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQ-REDPAFKIPN-GVAR  255 (394)
T ss_dssp             TTCC-EE-CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTT-CCCSEEECCT-TEEE
T ss_pred             Cccc-cc-ccchhhhccccceecccccccccccceeeccccccccccccc-----------ccc-cccceEEcCC-cceE
Confidence            3311 11 111334455555554443333222  0011111000000000           000 2333333322 1222


Q ss_pred             hhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752          341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI  420 (632)
Q Consensus       341 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (632)
                      .....| ..|+.|+.+.+..+. ......+|.+|+.|+.+.+.. .++.. +.                           
T Consensus       256 i~~~aF-~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I-~~---------------------------  304 (394)
T 4gt6_A          256 IETHAF-DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITEL-PE---------------------------  304 (394)
T ss_dssp             ECTTTT-TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEE-CT---------------------------
T ss_pred             ccccee-eecccccEEeccccc-ceecCcccccccccccccCCC-ccccc-Cc---------------------------
Confidence            222333 557788888876553 234455677888888888753 33332 32                           


Q ss_pred             cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC
Q 006752          421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  500 (632)
Q Consensus       421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  500 (632)
                                             .+|.+|.+|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+|++|
T Consensus       305 -----------------------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          305 -----------------------SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             -----------------------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             -----------------------eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence                                   26788888888888764 66666778888888888888654 677677788888888


Q ss_pred             cEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752          501 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  534 (632)
Q Consensus       501 ~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l  534 (632)
                      +.+++.++....   ..+..+..|+.+.+..|.+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            888888876542   4566677888888777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.7e-12  Score=116.88  Aligned_cols=108  Identities=17%  Similarity=0.272  Sum_probs=84.9

Q ss_pred             CCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ  431 (632)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (632)
                      ..+.+++++|.++.. |..+  .++|++|++++|.+++..|.                                      
T Consensus        10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~--------------------------------------   48 (170)
T 3g39_A           10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPG--------------------------------------   48 (170)
T ss_dssp             ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTT--------------------------------------
T ss_pred             CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChh--------------------------------------
Confidence            356777888777653 3322  36788888888888887565                                      


Q ss_pred             hcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          432 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       432 ~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                                   .|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|+++
T Consensus        49 -------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           49 -------------VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             -------------TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -------------hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence                         4667788899999999988877777888889999999999998877777888899999999999887


Q ss_pred             cC
Q 006752          512 NS  513 (632)
Q Consensus       512 ~~  513 (632)
                      ..
T Consensus       116 c~  117 (170)
T 3g39_A          116 CA  117 (170)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=3.7e-12  Score=129.32  Aligned_cols=113  Identities=20%  Similarity=0.200  Sum_probs=98.0

Q ss_pred             ccccc-cccchHHhhcCCcccccccCc-cCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          434 GAETD-LVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       434 ~~~~~-~l~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      +++++ .+..++.+..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|+
T Consensus        14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            44444 454444478889999999996 9999988889999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          512 NSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       512 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      +..+..|..++ |+.|++.+|++.|+|.+.++..+.
T Consensus        94 ~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~  128 (347)
T 2ifg_A           94 SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE  128 (347)
T ss_dssp             CCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             eeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence            98777777665 999999999999999887777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=3.7e-12  Score=115.08  Aligned_cols=107  Identities=12%  Similarity=0.229  Sum_probs=82.9

Q ss_pred             CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ  432 (632)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (632)
                      -+.+++++|.++. +|..+  .++|++|++++|.+++..|.                                       
T Consensus        14 ~~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~~~---------------------------------------   51 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPG---------------------------------------   51 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTT---------------------------------------
T ss_pred             CcEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccCHH---------------------------------------
Confidence            3677777777754 33323  36788888888888877565                                       


Q ss_pred             cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                                  .|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|++..
T Consensus        52 ------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           52 ------------VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ------------HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                        45677888889999888888666667888889999999998888777778888899999999988775


Q ss_pred             C
Q 006752          513 S  513 (632)
Q Consensus       513 ~  513 (632)
                      .
T Consensus       120 ~  120 (174)
T 2r9u_A          120 E  120 (174)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.21  E-value=2.7e-11  Score=125.11  Aligned_cols=152  Identities=15%  Similarity=0.142  Sum_probs=87.4

Q ss_pred             HHhccCC-CccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCC--CCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHh
Q 006752           84 AYLGAFR-YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALL  160 (632)
Q Consensus        84 ~~~~~~~-~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~--~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~  160 (632)
                      .+|.+++ .|+++.+-..  ++.....+|.+|++|+.+.+..+  ..++..+..+|.+|.+|+.+.+..+ ++.....+|
T Consensus        57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            3455563 4777777542  56666667777777777777654  1355555666777777777666543 343444566


Q ss_pred             cCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCC----CCCCCCCCCCEE
Q 006752          161 SSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV----TKLPNISSLECL  236 (632)
Q Consensus       161 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~l~~l~~L~~L  236 (632)
                      ..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+..    ..+..+..++..
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTI  210 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhcccccee
Confidence            77777777777543 23333456667777777777553 33344444533 4566666654321    123445555555


Q ss_pred             ECCCC
Q 006752          237 NLSNC  241 (632)
Q Consensus       237 ~L~~~  241 (632)
                      .....
T Consensus       211 ~~~~~  215 (394)
T 4gt6_A          211 TSDSE  215 (394)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            54443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.05  E-value=7.3e-10  Score=113.79  Aligned_cols=82  Identities=13%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             HhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCC
Q 006752           85 YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ  164 (632)
Q Consensus        85 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~  164 (632)
                      ++....+|+.+.+.. . ++..+..+|.+|.+|+.+++..+  ++..+..+|.++ +|+.+.+..+ +......+|..+ 
T Consensus        41 ~~~~~~~i~~v~ip~-~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-  113 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-G-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-  113 (379)
T ss_dssp             TGGGGGGCSEEEECT-T-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred             ccccccCCEEEEeCC-C-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence            345556677777764 2 56666667777777777777643  455555666665 4666655432 333333344433 


Q ss_pred             CCCEEEcCC
Q 006752          165 NLSVLDLGG  173 (632)
Q Consensus       165 ~L~~L~L~~  173 (632)
                      +|+.+.+..
T Consensus       114 ~L~~i~lp~  122 (379)
T 4h09_A          114 DLDDFEFPG  122 (379)
T ss_dssp             CCSEEECCT
T ss_pred             CcccccCCC
Confidence            566665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=1.7e-10  Score=117.05  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=63.8

Q ss_pred             EEEccCC-cCcchhHHHHHhcCCCCcEEEccC-CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752          330 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI  407 (632)
Q Consensus       330 ~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  407 (632)
                      .++.+++ +++.. |. + ..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|.              
T Consensus        12 ~v~~~~~n~l~~i-p~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------------   74 (347)
T 2ifg_A           12 GLRCTRDGALDSL-HH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD--------------   74 (347)
T ss_dssp             CEECCSSCCCTTT-TT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT--------------
T ss_pred             EEEcCCCCCCCcc-CC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH--------------
Confidence            3566665 56543 22 2 5566667777764 666666666666666677777777766665444              


Q ss_pred             hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                                                           .|.++++|++|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus        75 -------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           75 -------------------------------------AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -------------------------------------GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -------------------------------------HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                                                 355666666777777766665444454444 666666666665


Q ss_pred             C
Q 006752          488 D  488 (632)
Q Consensus       488 ~  488 (632)
                      .
T Consensus       117 c  117 (347)
T 2ifg_A          117 C  117 (347)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.98  E-value=8.4e-09  Score=104.06  Aligned_cols=200  Identities=16%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             CCCCEEEcCCCCCCh-H-------HHHhccCCCCccEEEecCCCCC---------chhhHhhcCCCCCcEEEccCCCCCC
Q 006752          164 QNLSVLDLGGLPVTD-L-------VLRSLQVLTKLEYLDLWGSQVS---------NRGAAVLKMFPRLSFLNLAWTGVTK  226 (632)
Q Consensus       164 ~~L~~L~L~~n~i~~-~-------~~~~l~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~  226 (632)
                      ..++.|.+......+ .       +..+...+++|+.|.+......         +.....+..+|+|+.|.++++    
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~----  182 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT----  182 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC----
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC----
Confidence            456777777554431 1       1223345678888877654321         112334445555555555443    


Q ss_pred             CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhh-hhhhcCCCccEEeccCC--C------CCch-hh
Q 006752          227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA-FLYIETSLLSFLDVSNS--S------LSRF-CF  296 (632)
Q Consensus       227 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n--~------l~~~-~~  296 (632)
                                     .-..++. + .+++|++|++..+.+...... .....+++|++|+|+.+  .      +..+ ..
T Consensus       183 ---------------~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          183 ---------------NNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             ---------------BTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             ---------------CCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence                           1112222 1 256677777766665443221 12235677777776421  1      1111 12


Q ss_pred             h--hcCCCCCeeeccCCCCCchHHHHHHh--cCCCCcEEEccCCcCcchhHHHHH---hcCCCCcEEEccCCCCChHHHH
Q 006752          297 L--TQMKALEHLDLSSSMIGDDSVEMVAC--VGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAIS  369 (632)
Q Consensus       297 l--~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~  369 (632)
                      +  ..+++|++|++.+|.+.+..+..+..  .+++|++|+++.|.+.+.....+.   ..+++|+.|++++|.+++....
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            2  34789999999999998777666664  237899999999999987766654   3478999999999999988887


Q ss_pred             HHhc-CCCccEEEccCCc
Q 006752          370 YMSM-MPSLKFIDISNTD  386 (632)
Q Consensus       370 ~l~~-~~~L~~L~Ls~n~  386 (632)
                      .+.. +  ...++++.++
T Consensus       326 ~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC--CSEEECCSBC
T ss_pred             HHHHHc--CCEEEecCCc
Confidence            7775 4  4668888876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=2.6e-09  Score=109.68  Aligned_cols=303  Identities=13%  Similarity=0.157  Sum_probs=146.6

Q ss_pred             hhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCC
Q 006752          134 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR  213 (632)
Q Consensus       134 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  213 (632)
                      +++....+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ ++.....+|..+ +
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            3445566777777764 344445567777778887777543 444444566665 5666665432 333333444432 4


Q ss_pred             CcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCc
Q 006752          214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR  293 (632)
Q Consensus       214 L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  293 (632)
                      |+.+.+..+                    +..+....+...+++.+.+..+ +..+.. ..+..+..++.+.+.......
T Consensus       115 L~~i~lp~~--------------------~~~i~~~~F~~~~l~~~~~~~~-v~~i~~-~~f~~~~~l~~~~~~~~~~~~  172 (379)
T 4h09_A          115 LDDFEFPGA--------------------TTEIGNYIFYNSSVKRIVIPKS-VTTIKD-GIGYKAENLEKIEVSSNNKNY  172 (379)
T ss_dssp             CSEEECCTT--------------------CCEECTTTTTTCCCCEEEECTT-CCEECS-CTTTTCTTCCEEEECTTCSSE
T ss_pred             cccccCCCc--------------------cccccccccccceeeeeeccce-eecccc-chhccccccccccccccccee
Confidence            555555432                    1122222222223333333221 111111 122334444444433322211


Q ss_pred             h--------------hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752          294 F--------------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS  359 (632)
Q Consensus       294 ~--------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  359 (632)
                      .              ..+..+..+..+.+.... .......+... ..++.+.+..+ +.......+ ..|..|+.+.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp  248 (379)
T 4h09_A          173 VAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYG-KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIP  248 (379)
T ss_dssp             EEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTC-SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEEC
T ss_pred             ecccceecccccceeccccccccccccccccce-eEEeecccccc-cccceeeeccc-eeEEccccc-cCCccceEEEcC
Confidence            1              122223333333333221 11111112222 45555555433 222222222 345666666665


Q ss_pred             CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccc
Q 006752          360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL  439 (632)
Q Consensus       360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  439 (632)
                      .+ ++.....+|.++.+|+.+.+..+ +... +.                                              
T Consensus       249 ~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~----------------------------------------------  279 (379)
T 4h09_A          249 KN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-PY----------------------------------------------  279 (379)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEECCC-CSEE-CT----------------------------------------------
T ss_pred             CC-ccEeCccccceeehhcccccccc-ceec-cc----------------------------------------------
Confidence            44 44344445556666666665432 2221 11                                              


Q ss_pred             ccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC
Q 006752          440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK  519 (632)
Q Consensus       440 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~  519 (632)
                          .+|.+|.+|+.+.+.++.++.+...+|.++++|+.+.|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.
T Consensus       280 ----~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          280 ----LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             ----TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             ----cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence                24666677777777766666666666777777777777543 55555566777777777777544 5555556666


Q ss_pred             CCC
Q 006752          520 PPR  522 (632)
Q Consensus       520 ~~~  522 (632)
                      ++.
T Consensus       354 ~c~  356 (379)
T 4h09_A          354 GSS  356 (379)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=4.6e-09  Score=105.96  Aligned_cols=201  Identities=16%  Similarity=0.173  Sum_probs=113.6

Q ss_pred             CCCccEEEccCCCCCH-----hH---HHHhcCCCCCCEEEcCCCCCC---------hHHHHhccCCCCccEEEecCCCCC
Q 006752          139 ISTLEKLWLSETGLTA-----DG---IALLSSLQNLSVLDLGGLPVT---------DLVLRSLQVLTKLEYLDLWGSQVS  201 (632)
Q Consensus       139 l~~L~~L~L~~n~i~~-----~~---~~~~~~l~~L~~L~L~~n~i~---------~~~~~~l~~l~~L~~L~L~~n~l~  201 (632)
                      .+.++.|.+......+     ..   ..+...+++|+.|.+......         +.+...+..+|+|+.|+++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3456777777555431     11   223446789999999765321         124455678899999999987311


Q ss_pred             chhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc--CCCCCcEEEeeCC--C------CCchhh
Q 006752          202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE--NKAPLAKISLAGT--T------FINERE  271 (632)
Q Consensus       202 ~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~--~~~~L~~L~l~~n--~------~~~~~~  271 (632)
                      . .+. + .+++|++|++..+.++.                  .....+.  .+++|+.|+|+.+  .      +..+..
T Consensus       186 ~-l~~-~-~~~~L~~L~L~~~~l~~------------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          186 S-IGK-K-PRPNLKSLEIISGGLPD------------------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             B-CCS-C-BCTTCSEEEEECSBCCH------------------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             e-ecc-c-cCCCCcEEEEecCCCCh------------------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            1 111 2 24555555555544432                  1111111  3444555544311  0      001111


Q ss_pred             hhhhhcCCCccEEeccCCCCCch--hhh---hcCCCCCeeeccCCCCCchHHHHHHh---cCCCCcEEEccCCcCcchhH
Q 006752          272 AFLYIETSLLSFLDVSNSSLSRF--CFL---TQMKALEHLDLSSSMIGDDSVEMVAC---VGANLRNLNLSNTRFSSAGV  343 (632)
Q Consensus       272 ~~~~~~~~~L~~L~ls~n~l~~~--~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~  343 (632)
                      ......+++|++|++.+|.+...  ..+   ..+++|++|+++.|.+++.++..+..   .+++|+.|++++|.+++...
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            11112356666666666666532  111   24678888888888888776555542   13789999999888888777


Q ss_pred             HHHHhcCCCCcEEEccCCC
Q 006752          344 GILAGHLPNLEILSLSGTQ  362 (632)
Q Consensus       344 ~~~~~~~~~L~~L~L~~n~  362 (632)
                      ..+...+  ...+++++++
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            7765434  4668888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.96  E-value=5.6e-10  Score=98.80  Aligned_cols=84  Identities=20%  Similarity=0.407  Sum_probs=42.1

Q ss_pred             cccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCC----CCcCEEeccCCCCCChhhHhhhcCCCC
Q 006752           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSIST  141 (632)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l----~~L~~L~L~~~~~l~~~~~~~l~~l~~  141 (632)
                      .|++||+++|. +++.....+..|++|++|+|++|..+++.....++.+    ++|++|+|++|..+++.+...+..+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35555555553 4443334444555555555555544555555555442    345555555554455555555555555


Q ss_pred             ccEEEccCC
Q 006752          142 LEKLWLSET  150 (632)
Q Consensus       142 L~~L~L~~n  150 (632)
                      |++|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.85  E-value=1.6e-08  Score=92.00  Aligned_cols=119  Identities=20%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             HHHHHhccCCCccEEEcCCC-CCCCchhHHh----hhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCCC
Q 006752           81 EWMAYLGAFRYLRSLNVADC-RRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETG  151 (632)
Q Consensus        81 ~~~~~~~~~~~L~~L~L~~~-~~i~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n~  151 (632)
                      .+...+...+.|++|+|++| . +++.....    +...++|++|+|++| .+++.+...++    ..+.|++|+|++|.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            44556667777777777777 5 66654443    335677777777777 56666554443    34677777777777


Q ss_pred             CCHhHH----HHhcCCCCCCEEEc--CCCCCChHHHH----hccCCCCccEEEecCCCCC
Q 006752          152 LTADGI----ALLSSLQNLSVLDL--GGLPVTDLVLR----SLQVLTKLEYLDLWGSQVS  201 (632)
Q Consensus       152 i~~~~~----~~~~~l~~L~~L~L--~~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~  201 (632)
                      ++....    ..+...++|++|++  ++|.+.+....    .+...++|++|++++|.+.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            776543    34555667777777  66777665433    3344567777777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.80  E-value=6.5e-09  Score=91.96  Aligned_cols=88  Identities=20%  Similarity=0.413  Sum_probs=74.5

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCC----CCccEEEccCC-CCCHhHHHHhcCCC
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSET-GLTADGIALLSSLQ  164 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l----~~L~~L~L~~n-~i~~~~~~~~~~l~  164 (632)
                      .+|++|++++|. +++.....+.+|++|++|+|++|..+++.+...++.+    ++|++|+|++| ++++.....+..++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            469999999998 9998888899999999999999988999998888875    47889999888 58887777788888


Q ss_pred             CCCEEEcCCCC-CCh
Q 006752          165 NLSVLDLGGLP-VTD  178 (632)
Q Consensus       165 ~L~~L~L~~n~-i~~  178 (632)
                      +|++|++++|. +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            88888888876 554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=2.6e-08  Score=90.54  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=82.9

Q ss_pred             hcCCCccEEeccCC-CCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHH
Q 006752          276 IETSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGI  345 (632)
Q Consensus       276 ~~~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~  345 (632)
                      ...+.|++|++++| .+...      ..+...++|++|++++|.+.+.+...+...   .++|++|++++|.+.+.....
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            35566777777776 66543      455667888999999998887665544332   278999999999998876655


Q ss_pred             HH---hcCCCCcEEEc--cCCCCChHHHHH----HhcCCCccEEEccCCcccc
Q 006752          346 LA---GHLPNLEILSL--SGTQIDDYAISY----MSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       346 ~~---~~~~~L~~L~L--~~n~l~~~~~~~----l~~~~~L~~L~Ls~n~i~~  389 (632)
                      ++   ...++|++|++  ++|.+++.....    +...++|++|++++|.+..
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            54   34568999999  889998765444    4466899999999998754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=6.4e-07  Score=85.51  Aligned_cols=58  Identities=28%  Similarity=0.278  Sum_probs=37.5

Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcc--cccccccccccCCCcch-------hhhccCCCCcEEe
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLTDVSL-------HQLSSLSKLTNLS  504 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~  504 (632)
                      .+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+..|       ..+..+++|+.||
T Consensus       191 ~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          191 IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            455677777777777777764  2333333  77777777777765433       2456677777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=3.1e-07  Score=87.68  Aligned_cols=108  Identities=19%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             HhhcCCcccc--cccCccCCCC---CccccccCcccccccccccccCCCc--chhhhccCCCCcEEeecCceeccC-CCC
Q 006752          445 ALQNLNHLER--LNLEQTQVSD---ATLFPLSTFKELIHLSLRNASLTDV--SLHQLSSLSKLTNLSIRDAVLTNS-GLG  516 (632)
Q Consensus       445 ~l~~l~~L~~--L~Ls~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~ls~N~l~~~-~~~  516 (632)
                      .+...+.|+.  ++++.|....   .......++++|+.|+|++|+|+++  +|..+..+++|+.|+|++|+|++. ...
T Consensus       136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~  215 (267)
T 3rw6_A          136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD  215 (267)
T ss_dssp             TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred             HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence            3555556665  6667764322   1111123577888888888888873  346677888888888888888875 122


Q ss_pred             CCCCCCCcceEecCCCcccCh------HHHHHHHHHcCCeeeee
Q 006752          517 SFKPPRSLKLLDLHGGWLLTE------DAILQFCKMHPRIEVWH  554 (632)
Q Consensus       517 ~l~~~~~L~~L~l~~N~l~~~------~~~~~~~~~~~~~~~~~  554 (632)
                      .+..+ .|++|++++|++ ++      .........+|.+...+
T Consensus       216 ~l~~l-~L~~L~L~~Npl-~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGL-KLEELWLDGNSL-CDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTS-CCSEEECTTSTT-GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccC-CcceEEccCCcC-ccccCcchhHHHHHHHHCcccCeEC
Confidence            33333 888999999987 43      23345566777765443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.14  E-value=1.1e-05  Score=72.68  Aligned_cols=112  Identities=15%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             cCCCccEEeccCC-CCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHHH
Q 006752          277 ETSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGIL  346 (632)
Q Consensus       277 ~~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~  346 (632)
                      .-+.|+.|+++++ .+...      .++...+.|+.|+|++|.+.+.+...++..   .+.|++|+|+.|.|.+.+...+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4566777777764 55432      456667888999999998887765555432   2789999999999988877776


Q ss_pred             HhcC---CCCcEEEccCC---CCChHH----HHHHhcCCCccEEEccCCccc
Q 006752          347 AGHL---PNLEILSLSGT---QIDDYA----ISYMSMMPSLKFIDISNTDIK  388 (632)
Q Consensus       347 ~~~~---~~L~~L~L~~n---~l~~~~----~~~l~~~~~L~~L~Ls~n~i~  388 (632)
                      +..+   +.|++|+|++|   .+.+..    ...+..-+.|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            6554   47999999864   566543    444556788999999877653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.03  E-value=4.8e-05  Score=68.51  Aligned_cols=116  Identities=12%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             HHHhccCCCccEEEcCCCCCCCchhHHh----hhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCCCCCH
Q 006752           83 MAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGLTA  154 (632)
Q Consensus        83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n~i~~  154 (632)
                      ...+..-+.|++|+|+++..+.+....+    +..-+.|++|+|++| .+++.+...++    .-+.|++|+|++|.|..
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3334444555555555542254443332    223455566666655 45555544443    23556666666666555


Q ss_pred             hHHH----HhcCCCCCCEEEcCCC---CCChH----HHHhccCCCCccEEEecCCC
Q 006752          155 DGIA----LLSSLQNLSVLDLGGL---PVTDL----VLRSLQVLTKLEYLDLWGSQ  199 (632)
Q Consensus       155 ~~~~----~~~~l~~L~~L~L~~n---~i~~~----~~~~l~~l~~L~~L~L~~n~  199 (632)
                      .+..    .+..-+.|++|+|+++   .+...    +...+..-+.|+.|+++.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4432    3334445666666543   33332    22233444556666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.64  E-value=3.9e-05  Score=64.66  Aligned_cols=69  Identities=13%  Similarity=0.041  Sum_probs=53.7

Q ss_pred             ccccccccCC-CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          478 HLSLRNASLT-DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       478 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      .++.+++.++ ..+|..+  -++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.|+|.+.++..+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~   81 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA   81 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence            5666677666 1244332  2468889999999988888888888999999999999999999888887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.51  E-value=0.0021  Score=53.84  Aligned_cols=57  Identities=12%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             cccccCccCCC-CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          453 ERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       453 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      ..++-+++.++ ..+|..+  .++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888887 2356543  357999999999999988888999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	632
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 6e-11
 Identities = 57/381 (14%), Positives = 130/381 (34%), Gaps = 41/381 (10%)

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR 203
           K  L +T +T       + L  ++ L    L +    +  ++ L  L  ++   +Q++  
Sbjct: 26  KTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT-- 79

Query: 204 GAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-------- 255
               LK   +L  + +    +  +  +++L  L       + I + +  K          
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 256 ----LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
               ++ IS        ++ +F    T L    +++                    L++ 
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 312 MIGDDSVEMVA-----CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 366
                +   ++      +  NL  L+L+  +    G       L NL  L L+  QI + 
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISN- 255

Query: 367 AISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVL 426
            ++ +S +  L  + +    I  + P   +    +                        L
Sbjct: 256 -LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 427 AGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 486
                      + +  ++ + +L  L+RL     +VSD  +  L+    +  LS  +  +
Sbjct: 315 YF---------NNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 487 TDVSLHQLSSLSKLTNLSIRD 507
           +D  L  L++L+++T L + D
Sbjct: 364 SD--LTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 25/153 (16%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST---- 141
           +G    L +L   D      S L  L+G+T L EL L        + +  L +++     
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 142 ---------------LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV 186
                          L  L L    ++   I+ +SSL  L  L      V+D+   SL  
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDV--SSLAN 349

Query: 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
           LT + +L    +Q+S      L    R++ L L
Sbjct: 350 LTNINWLSAGHNQIS--DLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 82  WMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST 141
            ++ +     L +L   +        +  ++ +  L  L L        + +  + S++ 
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN---NISDISPVSSLTK 330

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
           L++L+ +   ++   ++ L++L N++ L  G   ++DL    L  LT++  L L
Sbjct: 331 LQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 60/369 (16%), Positives = 121/369 (32%), Gaps = 37/369 (10%)

Query: 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSIL 247
           E +     + +           +++ L     G+  +  +   ++L  +N SN  +  I 
Sbjct: 23  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI- 81

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307
              +N   L  I +      +          + L+  +   + +     LT +  LE   
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 308 LSSSMIGDDSVEMVACVG------------ANLRNLNLSNTRFSSAGVGILAGHLPNLEI 355
            + S I   S                    ANL  L   +   +      +   L NLE 
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC----------- 404
           L  +  QI D  I+ + ++ +L  + ++   +K +     +                   
Sbjct: 202 LIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 259

Query: 405 --FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 462
                +  L L A              +  +    + +  ++ + NL +L  L L    +
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 463 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 522
           SD  + P+S+  +L  L   N  ++DVS   L++L+ +  LS     +  S L       
Sbjct: 320 SD--ISPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQI--SDLTPLANLT 373

Query: 523 SLKLLDLHG 531
            +  L L+ 
Sbjct: 374 RITQLGLND 382

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 12/122 (9%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLS 359
           ++ LD+    + D     +  +    + + L +   + A    ++      P L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 360 GTQIDDYAISYM-----SMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLH 414
             ++ D  +  +     +    ++ + + N  + G       +   +      ++     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 415 AY 416
             
Sbjct: 124 LG 125

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 6e-07
 Identities = 9/67 (13%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM----PSLKFIDI 382
           ++++L++     S A    L   L   +++ L    + +     +S      P+L  +++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 383 SNTDIKG 389
            + ++  
Sbjct: 63  RSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 142 LEKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLW 196
           ++ L +    L+    A LL  LQ   V+ L    +T+   +     L+V   L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 197 GSQVSNRGAAVL-----KMFPRLSFLNLAW 221
            +++ + G   +         ++  L+L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 7e-06
 Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 10/140 (7%)

Query: 281 LSFLDVSNSSLSRFCF---LTQMKALEHLDLSSSMIGDDSVEMVACVGA---NLRNLNLS 334
           +  LD+    LS   +   L  ++  + + L    + +   + ++        L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 335 NTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM 390
           +      GV  +   L      ++ LSL    +       +S                 +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 391 YPSGQMNVFFSAYCFMIVYN 410
                + +            
Sbjct: 124 LGDAGLQLLCEGLLDPQCRL 143

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 300 MKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAGHLPN---- 352
              L  L L+   + D S   +A       +LR L+LSN     AG+  L   +      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 353 LEILSLSGTQIDDYAISYMSMM----PSLKFI 380
           LE L L      +     +  +    PSL+ I
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 80  AEWMAYLGAFRYLRSLNVADCRRVTSSALW---ALTGMTCLKELDLSRCVKVTDAGMKHL 136
                       LR L +ADC    SS       L     L+ELDLS    + DAG+  L
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQL 417

Query: 137 LSI-----STLEKLWLSETGLTADGIALLSSLQ----NLSVL 169
           +         LE+L L +   + +    L +L+    +L V+
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 135 HLLSISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVLRSL-----Q 185
                S L  LWL++  ++    +     L +  +L  LDL    + D  +  L     Q
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 186 VLTKLEYLDLWGSQVSNRGA----AVLKMFPRLSFL 217
               LE L L+    S        A+ K  P L  +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 448 NLNHLERLNLEQTQVSDATLFPL-STFKELIHLSLRNASLTDVSLHQLSS----LSKLTN 502
           +L+ ++ L+++  ++SDA    L    ++   + L +  LT+     +SS       L  
Sbjct: 1   SLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 503 LSIRDAVLTNSGLGSF-----KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWH 554
           L++R   L + G+         P   ++ L L    L      +    +     +  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 116

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 279 SLLSFLDVSNSSLSRFCF------LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANL 328
           S+L  L +++  +S          L    +L  LDLS++ +GD  +  +       G  L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 329 RNLNLSNTRFSSAGVGILAG---HLPNLEILS 357
             L L +  +S      L       P+L ++S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELD 121
           + ++++++ E   DA W   L   +  + + + DC  +T +       AL     L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61

Query: 122 LSRCVKVTDAGMKHLLSI-----STLEKLWLS 148
           L    ++ D G+  +L         ++KL L 
Sbjct: 62  LRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 7e-04
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 165 NLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRG----AAVLKMFPRLSFLNL 219
           ++  LD+    ++D     L  +L + + + L    ++       ++ L++ P L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 220 AWTGVTKLPNISSLECLNLSNCTIDSI 246
               +  +     L+ L   +C I  +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKL 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 11/254 (4%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           LD++  +L       ++ +   +         D           +++++LSN+    + +
Sbjct: 5   LDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
             +      L+ LSL G ++ D  ++ ++   +L  +++S       +    +    S  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463
             + +   F     +V    + ++  I Q+           +  +       NL    +S
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 464 ------DATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 516
                 +           L HLSL     +   +L +L  +  L  L +   V  +  L 
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV-PDGTLQ 242

Query: 517 SFKPPRSLKLLDLH 530
             K   +L  L ++
Sbjct: 243 LLK--EALPHLQIN 254

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 22/263 (8%)

Query: 145 LW----LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
           LW    L+   L  D    L S   +         +   +        +++++DL  S +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVI 58

Query: 201 SNRG-AAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNENKA 254
                  +L    +L  L+L    ++      L   S+L  LNLS C+  S        +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA----------LE 304
             +++     ++  +                ++  +LS +    Q             L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           HLDLS S++  +           L++L+LS          +  G +P L+ L + G   D
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 365 DYAISYMSMMPSLKFIDISNTDI 387
                    +P L+      T I
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 18/93 (19%), Positives = 35/93 (37%)

Query: 76  NSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135
           N   ++    +     L  L+++D   + +        +  L+ L LSRC  +    +  
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168
           L  I TL+ L +           L  +L +L +
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 38/274 (13%), Positives = 71/274 (25%), Gaps = 35/274 (12%)

Query: 90  RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE 149
           + + +             L        ++ +DLS    +  + +                
Sbjct: 23  QGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDLSNS-VIEVSTLH--------------- 64

Query: 150 TGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK 209
                    +LS    L  L L GL ++D ++ +L   + L  L+L G    +  A    
Sbjct: 65  --------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 210 MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 269
           +        L  +             +   +            +  L+            
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--------TITQLNLSGYRKNLQKSDLS 168

Query: 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 329
                      L   D        F    Q+  L+HL LS          +       L+
Sbjct: 169 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

Query: 330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
            L +         + +L   LP+L+I     T I
Sbjct: 229 TLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTI 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 20/262 (7%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
                L L    +T        +L+NL  L L    ++ +   +   L KLE L L  +Q
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNENKA 254
           +      + K    L       T V K     L  +  +E       +        +   
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM 312
            L+ I +A T      +         L+ L +  + +++     L  +  L  L LS + 
Sbjct: 151 KLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD------Y 366
           I       +     +LR L+L+N +      G+       ++++ L    I         
Sbjct: 207 ISAVDNGSL-ANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 367 AISYMSMMPSLKFIDISNTDIK 388
              Y +   S   + + +  ++
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCT 242
                LDL  ++++       K    L  L L    ++K+       +  LE L LS   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA 302
           +  + E                         +      L   +   + + +  F   +  
Sbjct: 91  LKELPEK------------------------MPKTLQELRVHENEITKVRKSVF-NGLNQ 125

Query: 303 LEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
           +  ++L ++ +    +E  A  G   L  + +++T  ++    I  G  P+L  L L G 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----IPQGLPPSLTELHLDGN 181

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421
           +I     + +  + +L  + +S   I  +      N        +    L     G    
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 422 PS--SVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 479
                V           ++                ++L    V    + P STF+ +   
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVR 300

Query: 480 S 480
           +
Sbjct: 301 A 301

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 13/223 (5%)

Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
           +L N   +  G   VTD V  +   L  +  L  +G+ V+      ++    L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 281
             +T L  + +L  +     + + +   +      +  +L  T+        L   ++L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 282 SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341
                 N   +                ++ +     +  ++     L  L   + + S  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS----KLTTLKADDNKISDI 188

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
                   LPNL  + L   QI D  +S ++   +L  + ++N
Sbjct: 189 ---SPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 44/217 (20%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
           AN   +    +  +     +    L  +  LS  GT +    I  +  + +L  +++ + 
Sbjct: 19  ANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 386 DIKGMYPSGQMNVFFSAYCFMIVYN----------------------------------- 410
            I  + P   +                                                 
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 411 LFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 470
           L+L                +Q +      V  LT L NL+ L  L  +  ++SD  + PL
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507
           ++   LI + L+N  ++DVS   L++ S L  +++ +
Sbjct: 192 ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 17/224 (7%)

Query: 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197
           +++   K+   ++ +T       + L  ++ L   G  VT   +  +Q L  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           +Q        +     L  L            + ++  +          L   +      
Sbjct: 73  NQ--------ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
              L+    +      +   + L    ++   S+                L++    D+ 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 318 VEMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
           +  ++ + +  NL  ++L N + S         +  NL I++L+
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 19/211 (9%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +    S+++       +  +  L    + +   ++E V  +  NL  L L + + +    
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEGVQYL-NNLIGLELKDNQITDLAP 80

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403
                +L  +  L LSG  + + +            +  +                    
Sbjct: 81  L---KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVL-----------SLTALQNLNHL 452
              I     L     + + S   A             L            ++ L +L +L
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNL 197

Query: 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483
             ++L+  Q+SD  + PL+    L  ++L N
Sbjct: 198 IEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 467 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLK 525
           +FP       I ++   +++TD      + L  +T LS     +T   G+       +L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLN---NLI 66

Query: 526 LLDLHGGWLLTEDAILQFCKMHPRIEVWH 554
            L+L    +     +    K+       +
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGN 95

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 23/118 (19%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN------------- 330
           L +++  L+  C L Q+  + HLDLS + +      + A     +               
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 331 -------LNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLK 378
                  L L N R   +         P L +L+L G    Q +        M+PS+ 
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-----------AISYMSMMP 375
           ++  +  +N+   S   GI   +LPN+  L L+G ++ D                 + + 
Sbjct: 47  SIDQIIANNSDIKSV-QGI--QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
            L  +               ++          + +L+L                +  +  
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163

Query: 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483
           E + +  +  L  L  L+ L L +  +SD  L  L+  K L  L L +
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 18/192 (9%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
                   N +  S    +    L +++ +  + + I    +  +  +P++  + ++   
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNK 79

Query: 387 IKGMYPSGQMNVFFSAYC-----------FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435
           +  + P   +      +              +     L      I   + L    Q    
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 495
                            +   L       + + PL+   +L +L L    ++D     L 
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-----LR 194

Query: 496 SLSKLTNLSIRD 507
           +L+ L NL + +
Sbjct: 195 ALAGLKNLDVLE 206

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 35/224 (15%)

Query: 161 SSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220
            +       +L    VTD V  +   L  ++ +    S + +     ++  P ++ L L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 280
              +T +  +++L+ L       + + + +  K      SL+           L     L
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
            S    +N            K        + +     +                      
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---------------------- 174

Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
                    L  L+ L LS   I D  +  ++ + +L  +++ +
Sbjct: 175 -------AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 5/134 (3%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
             R L+L   +     +  L   L   + +  S  +I    +    ++  LK + ++N  
Sbjct: 19  RDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNR 74

Query: 387 IKGMYPSGQMNVFFSAYCFMIVYNL-FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445
           I  +       +       +   +L  L     +    S+    I +          L  
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134

Query: 446 LQNLNHLERLNLEQ 459
           +  +  +  L+ ++
Sbjct: 135 IYKVPQVRVLDFQK 148

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 21/189 (11%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
           A      L  T  +     +    L  +  L      I    I  +  + +L  I+ SN 
Sbjct: 18  AEKMKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 72

Query: 386 DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445
            +  + P   +                             L             + +L  
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 446 LQNLNHLERLNLEQTQVSDA-----------TLFPLSTFKELIHLSLRNASLTDVSLHQL 494
           L+  ++        + ++              L PL+    L  L + +  ++D     +
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-----I 187

Query: 495 SSLSKLTNL 503
           S L+KLTNL
Sbjct: 188 SVLAKLTNL 196

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
              ++ SS           +LE L++S++ + +            L  L  S    +   
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE-- 318

Query: 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
              +     NL+ L +    +      +  +  S++ + +++
Sbjct: 319 ---VPELPQNLKQLHVEYNPLR----EFPDIPESVEDLRMNS 353

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 25/184 (13%), Positives = 47/184 (25%), Gaps = 8/184 (4%)

Query: 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383
           +  +   L+LS     +  +  L      L  L+L   ++          +P L  +D+S
Sbjct: 29  LPKDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLS 85

Query: 384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL 443
           +  ++ +   GQ     +           L                  +      L   L
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKGNELKTLPPGL 143

Query: 444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 503
                      L         A L   +  + L  L L+  SL  +          L   
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLL--NGLENLDTLLLQENSLYTIP-KGFFGSHLLPFA 200

Query: 504 SIRD 507
            +  
Sbjct: 201 FLHG 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	632
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.02

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=8.2e-28  Score=246.89  Aligned_cols=342  Identities=22%  Similarity=0.298  Sum_probs=203.8

Q ss_pred             cCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCC
Q 006752           88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS  167 (632)
Q Consensus        88 ~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  167 (632)
                      .+.+|++|++++++ |++.  ..+..+++|++|++++| .+++..  .++++++|++|++++|++.+..  .+..+++|+
T Consensus        42 ~l~~l~~L~l~~~~-I~~l--~gl~~L~nL~~L~Ls~N-~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNN-QLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             HhCCCCEEECCCCC-CCCc--cccccCCCCCEEeCcCC-cCCCCc--cccCCccccccccccccccccc--ccccccccc
Confidence            44567888888776 6542  35667788888888887 566543  3777788888888888776543  367777788


Q ss_pred             EEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchh
Q 006752          168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSIL  247 (632)
Q Consensus       168 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~  247 (632)
                      .|+++++.+++..  .......+.......+.+....+.....................+.............+.... .
T Consensus       114 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  190 (384)
T d2omza2         114 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I  190 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc-c
Confidence            8888777776543  233455666666666655444333322222223333333333333333333333333332221 1


Q ss_pred             ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCC
Q 006752          248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  327 (632)
Q Consensus       248 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  327 (632)
                      ....                         .+++++.+++++|.++.......+++|++|++++|.+++..  .+... ++
T Consensus       191 ~~~~-------------------------~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l-~~  242 (384)
T d2omza2         191 SVLA-------------------------KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TN  242 (384)
T ss_dssp             GGGG-------------------------GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TT
T ss_pred             cccc-------------------------cccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhhcc-cc
Confidence            2222                         34455555555555555444455555666666665555422  23333 56


Q ss_pred             CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI  407 (632)
Q Consensus       328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  407 (632)
                      |+.+++++|++++..+   .+.+++|++|+++++++++..+  +..++.++.++++.|.+.+.                 
T Consensus       243 L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~-----------------  300 (384)
T d2omza2         243 LTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-----------------  300 (384)
T ss_dssp             CSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-----------------
T ss_pred             cchhccccCccCCCCc---ccccccCCEeeccCcccCCCCc--cccccccccccccccccccc-----------------
Confidence            6666666666655433   2456677777777776665432  55677777777777776653                 


Q ss_pred             hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752          408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  487 (632)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  487 (632)
                                                          ..+..+++++.|++++|++++..  .+..+++|++|++++|+++
T Consensus       301 ------------------------------------~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         301 ------------------------------------SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ------------------------------------GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             ------------------------------------cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence                                                12455667777777777777643  3666777777777777777


Q ss_pred             CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752          488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  532 (632)
Q Consensus       488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N  532 (632)
                      +. + .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       343 ~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 DV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            63 2 57777777777777777777543  667777777777776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.4e-27  Score=245.04  Aligned_cols=323  Identities=24%  Similarity=0.322  Sum_probs=221.2

Q ss_pred             CCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccE
Q 006752          113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY  192 (632)
Q Consensus       113 ~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  192 (632)
                      .+.+|++|+++++ .++.  .+.+..+++|++|++++|++++..  .+.++++|++|++++|++.+..  .++.+++|+.
T Consensus        42 ~l~~l~~L~l~~~-~I~~--l~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCC-CCCC--ccccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccc
Confidence            4456777777776 4543  234556666777777777666543  2666666666666666665532  2555666666


Q ss_pred             EEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhh
Q 006752          193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINERE  271 (632)
Q Consensus       193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~  271 (632)
                      |+++++.+++..+  ....                   ..+.......+.+..+..... ................    
T Consensus       115 L~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----  169 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNL-------------------TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK----  169 (384)
T ss_dssp             EECCSSCCCCCGG--GTTC-------------------TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG----
T ss_pred             ccccccccccccc--cccc-------------------ccccccccccccccccccccccccccccccccccchhh----
Confidence            6666665554332  1222                   333444444443332221111 1111111111111111    


Q ss_pred             hhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCC
Q 006752          272 AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP  351 (632)
Q Consensus       272 ~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  351 (632)
                        .+.............+..........+++++.+++++|.+++..+.  ... ++|++|++++|++++..  .+ ..++
T Consensus       170 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~--~~~-~~L~~L~l~~n~l~~~~--~l-~~l~  241 (384)
T d2omza2         170 --PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GIL-TNLDELSLNGNQLKDIG--TL-ASLT  241 (384)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG--GGC-TTCCEEECCSSCCCCCG--GG-GGCT
T ss_pred             --hhccccccccccccccccccccccccccccceeeccCCccCCCCcc--ccc-CCCCEEECCCCCCCCcc--hh-hccc
Confidence              1223455555666666666667788899999999999999876542  333 89999999999998753  22 6789


Q ss_pred             CCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ  431 (632)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (632)
                      +|+.|++++|++++..+  +..+++|++|++++|++++..                                        
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~----------------------------------------  279 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----------------------------------------  279 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG----------------------------------------
T ss_pred             ccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC----------------------------------------
Confidence            99999999999987654  788999999999999988652                                        


Q ss_pred             hcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          432 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       432 ~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                                   .+.+++.++.+++++|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|++++|+++
T Consensus       280 -------------~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         280 -------------PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             -------------GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             -------------ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence                         345678899999999999873  45778999999999999999965  3889999999999999998


Q ss_pred             cCCCCCCCCCCCcceEecCCCcccC
Q 006752          512 NSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       512 ~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      +.  ..+..+++|++|++++|++..
T Consensus       343 ~l--~~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         343 DV--SSLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CC--GGGGGCTTCCEEECCSSCCCB
T ss_pred             CC--hhHcCCCCCCEEECCCCcCCC
Confidence            74  368899999999999999843

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-24  Score=224.73  Aligned_cols=389  Identities=22%  Similarity=0.282  Sum_probs=247.7

Q ss_pred             cccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHH----hhhCCCCcCEEeccCCCCCChhhHhhhc----
Q 006752           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVTDAGMKHLL----  137 (632)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~----~l~~l~~L~~L~L~~~~~l~~~~~~~l~----  137 (632)
                      +|++||+++++..+..+.+.+..++++++|+|++|+ +++....    ++..+++|++|||++| .+++.+...+.    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            689999999976566778888999999999999998 8876554    4568999999999999 78776665554    


Q ss_pred             -CCCCccEEEccCCCCCHhH----HHHhcCCCCCCEEEcCCCCCChHHHHhcc-----CCCCccEEEecCCCCCchh---
Q 006752          138 -SISTLEKLWLSETGLTADG----IALLSSLQNLSVLDLGGLPVTDLVLRSLQ-----VLTKLEYLDLWGSQVSNRG---  204 (632)
Q Consensus       138 -~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---  204 (632)
                       ..++|++|++++|.+++..    +..+..+++|++|++++|.+.+.....+.     ..............+....   
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             2358999999999998643    45677899999999999998875444331     2334445555554443222   


Q ss_pred             -hHhhcCCCCCcEEEccCCCCCC---------C-CCCCCCCEEECCCCcccc-----hhccccCCCCCcEEEeeCCCCCc
Q 006752          205 -AAVLKMFPRLSFLNLAWTGVTK---------L-PNISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFIN  268 (632)
Q Consensus       205 -~~~l~~l~~L~~L~l~~n~l~~---------l-~~l~~L~~L~L~~~~l~~-----~~~~~~~~~~L~~L~l~~n~~~~  268 (632)
                       ...+...+.++.++++++....         + ........+++..+.+..     ....+...+.++.+.+.+|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence             2234556778888887775542         1 123455667777766542     22233356777778877776643


Q ss_pred             hh----hhhhhhcCCCccEEeccCCCCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHh----cCCCCcEEEcc
Q 006752          269 ER----EAFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLS  334 (632)
Q Consensus       269 ~~----~~~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~l~  334 (632)
                      ..    ..........++.+++++|.+...      ..+...+.++.+++++|.+++.....+..    ....|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence            21    112233456777777777777544      33455677777777777776655544432    12467777777


Q ss_pred             CCcCcchhHHHH---HhcCCCCcEEEccCCCCChHHHHHHh-----cCCCccEEEccCCccccccCCCccchhhhhhhhh
Q 006752          335 NTRFSSAGVGIL---AGHLPNLEILSLSGTQIDDYAISYMS-----MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM  406 (632)
Q Consensus       335 ~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  406 (632)
                      +|.++......+   ...+++|++|+|++|++++.....++     ..+.|++|+|++|+++......+.          
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~----------  390 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA----------  390 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH----------
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH----------
Confidence            777766544333   23456777777777777665443332     345677777777776543111110          


Q ss_pred             hhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc-----Cccccccccc
Q 006752          407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS-----TFKELIHLSL  481 (632)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L  481 (632)
                                                           ..+..+++|++|+|++|++++.....|.     +...|+.|++
T Consensus       391 -------------------------------------~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         391 -------------------------------------ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             -------------------------------------HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             -------------------------------------HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence                                                 2455667777777777777664443332     2235777777


Q ss_pred             ccccCCCcchhhh----ccCCCCcEE
Q 006752          482 RNASLTDVSLHQL----SSLSKLTNL  503 (632)
Q Consensus       482 s~n~l~~~~~~~~----~~l~~L~~L  503 (632)
                      .+|.+.......+    ...|+|+.|
T Consensus       434 ~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         434 YDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             TTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            7776665444333    244555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=4e-26  Score=227.02  Aligned_cols=248  Identities=17%  Similarity=0.207  Sum_probs=194.2

Q ss_pred             CCCEEECCCCccc---chhccccCCCCCcEEEeeC-CCCCc-hhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCC
Q 006752          232 SLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFIN-EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE  304 (632)
Q Consensus       232 ~L~~L~L~~~~l~---~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~  304 (632)
                      ++++|+++++.+.   .+|+.++.+++|++|++++ |.+.+ +|..  +.++++|++|++++|++.+.  ..+..++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~--i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc--cccccccchhhhccccccccccccccchhhhc
Confidence            4666777776665   4677888888888888876 66664 4443  45778888888888887766  4567778888


Q ss_pred             eeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCC-CcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752          305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN-LEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (632)
Q Consensus       305 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  383 (632)
                      ++++++|.+.+..|..+..+ +.++.+++++|.+.+..+..+ ..++. ++.+++++|++++..+..+..+..+ .++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l-~~L~~l~l~~n~l~~~ip~~~-~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~  205 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECC
T ss_pred             ccccccccccccCchhhccC-cccceeecccccccccccccc-ccccccccccccccccccccccccccccccc-ccccc
Confidence            88888887777777777766 788888888888877766665 34444 4778888888877777767666444 68888


Q ss_pred             CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752          384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  463 (632)
Q Consensus       384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~  463 (632)
                      .+...+.+|.                                                   .+..+++++.+++++|.++
T Consensus       206 ~~~~~~~~~~---------------------------------------------------~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         206 RNMLEGDASV---------------------------------------------------LFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             SSEEEECCGG---------------------------------------------------GCCTTSCCSEEECCSSEEC
T ss_pred             cccccccccc---------------------------------------------------ccccccccccccccccccc
Confidence            8888777665                                                   3456789999999999998


Q ss_pred             CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752          464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE  537 (632)
Q Consensus       464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~  537 (632)
                      +.+ ..++.+++|+.|+|++|++++.+|.+|+++++|++|+|++|+++|.+|. +..+++|+.+++++|+..|+
T Consensus       235 ~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         235 FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             ccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            854 4688899999999999999999999999999999999999999998874 57889999999999987564

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=220.07  Aligned_cols=399  Identities=19%  Similarity=0.217  Sum_probs=256.6

Q ss_pred             CCccEEEcCCCCCCCchhHHh-hhCCCCcCEEeccCCCCCChhhHhh----hcCCCCccEEEccCCCCCHhHHHHhc---
Q 006752           90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLTADGIALLS---  161 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~----l~~l~~L~~L~L~~n~i~~~~~~~~~---  161 (632)
                      ++|++|++++++ +++..... +..++++++|+|++| .+++.+...    +..+++|++|+|++|.++......+.   
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            368889998877 77766444 457888889999988 677766543    45788888888888888754433332   


Q ss_pred             --CCCCCCEEEcCCCCCChH----HHHhccCCCCccEEEecCCCCCchhhHhhcC-CCCCcEEEccCCCCCCCCCCCCCC
Q 006752          162 --SLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKM-FPRLSFLNLAWTGVTKLPNISSLE  234 (632)
Q Consensus       162 --~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~l~~l~~L~  234 (632)
                        ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+.. +..               ......
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~---------------~~~~~~  144 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD---------------PQCRLE  144 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS---------------TTCCCC
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccc---------------cccccc
Confidence              235788888888888754    3455677888888888888876554433321 000               011122


Q ss_pred             EEECCCCccc-----chhccccCCCCCcEEEeeCCCCCchhhh----hhhhcCCCccEEeccCCCCCch------hhhhc
Q 006752          235 CLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREA----FLYIETSLLSFLDVSNSSLSRF------CFLTQ  299 (632)
Q Consensus       235 ~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~~L~~L~ls~n~l~~~------~~l~~  299 (632)
                      ..........     .+...+.....++.+.++++........    ...........+++..+.+...      ..+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  224 (460)
T d1z7xw1         145 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS  224 (460)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence            2222222222     1122233455666677666655432111    0112234556677777766543      34566


Q ss_pred             CCCCCeeeccCCCCCchHHH----HHHhcCCCCcEEEccCCcCcchhHHHH---HhcCCCCcEEEccCCCCChHHHHHHh
Q 006752          300 MKALEHLDLSSSMIGDDSVE----MVACVGANLRNLNLSNTRFSSAGVGIL---AGHLPNLEILSLSGTQIDDYAISYMS  372 (632)
Q Consensus       300 ~~~L~~L~l~~n~l~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~  372 (632)
                      .+.++.+++++|.+.+....    ........++.+++++|.+.......+   ....+.++.+++++|.+++.....++
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            78888999988887654322    222223679999999998876543322   24578899999999998876655543


Q ss_pred             -----cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhh
Q 006752          373 -----MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQ  447 (632)
Q Consensus       373 -----~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~  447 (632)
                           ....|+.+++++|.++......+.                                               ..+.
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~-----------------------------------------------~~~~  337 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFS-----------------------------------------------SVLA  337 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHH-----------------------------------------------HHHH
T ss_pred             ccccccccccccccccccchhhhhhhhcc-----------------------------------------------cccc
Confidence                 346799999999887654222110                                               2456


Q ss_pred             cCCcccccccCccCCCCCccccc----c-CcccccccccccccCCCc----chhhhccCCCCcEEeecCceeccCCCCCC
Q 006752          448 NLNHLERLNLEQTQVSDATLFPL----S-TFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSF  518 (632)
Q Consensus       448 ~l~~L~~L~Ls~n~l~~~~~~~l----~-~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  518 (632)
                      .+++|++|+|++|++++.....+    . ..+.|++|+|++|.|++.    ++..+..+++|++|++++|+|+..+...+
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL  417 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred             cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHH
Confidence            67789999999999876433333    2 356799999999999864    34456778999999999999987544333


Q ss_pred             ----C-CCCCcceEecCCCccc--ChHHHHHHHHHcCCeee
Q 006752          519 ----K-PPRSLKLLDLHGGWLL--TEDAILQFCKMHPRIEV  552 (632)
Q Consensus       519 ----~-~~~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~  552 (632)
                          . +...|+.|++.+|.+.  ....+.++.+..|.+++
T Consensus       418 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence                2 3357999999999983  22355566677777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-25  Score=214.60  Aligned_cols=216  Identities=17%  Similarity=0.227  Sum_probs=172.9

Q ss_pred             CccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEcc-CCcCcchhHHHHHhcCCCCcEE
Q 006752          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS-NTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .+++|+|++|.++.+  .++..+++|++|++++|.+.+..+..+... ..++.+.+. .+.++...+..+ +.+++|++|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~-~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc-ccccccccccccccccccchhh-cccccCCEE
Confidence            345555555555544  345666777777777777766555544444 666776654 345555545444 678899999


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      ++++|.+....+..+..+++|+.+++++|.+++..+.                                           
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~-------------------------------------------  147 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------------------------------------------  147 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------------------------------------
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChh-------------------------------------------
Confidence            9999988776677788889999999999999876444                                           


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  516 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  516 (632)
                              .|..+++|+.|++++|++++..+.+|.++++|+.+++++|++++..|..|..+++|++|++++|++++..+.
T Consensus       148 --------~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         148 --------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             --------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             --------HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence                    467788999999999999998889999999999999999999999999999999999999999999999889


Q ss_pred             CCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752          517 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  548 (632)
Q Consensus       517 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~  548 (632)
                      .|..+++|++|++++|++.|+|...++..+..
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~  251 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ  251 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             ccccccccCEEEecCCCCCCCccchHHHHHHH
Confidence            99999999999999999999998877766664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=5.5e-25  Score=218.71  Aligned_cols=212  Identities=15%  Similarity=0.133  Sum_probs=155.1

Q ss_pred             hhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHh
Q 006752          246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC  323 (632)
Q Consensus       246 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  323 (632)
                      +|..++++++|++|++++|++.+.++. .+..+..|+.+++++|.+...  ..+..++.++.+++++|.+.+..|..+..
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             cccccccccccchhhhccccccccccc-cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccc
Confidence            344444444444444444444443322 233556666666666655544  56777888888888888888777777766


Q ss_pred             cCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhh
Q 006752          324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY  403 (632)
Q Consensus       324 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  403 (632)
                      ....++.+++++|++++..+..+ +.+ ....++++++...+.++..+..+++++.+++++|.+.+.+|.          
T Consensus       172 l~~l~~~l~~~~n~l~~~~~~~~-~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~----------  239 (313)
T d1ogqa_         172 FSKLFTSMTISRNRLTGKIPPTF-ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----------  239 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGG-GGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG----------
T ss_pred             ccccccccccccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccccccc----------
Confidence            63445888888888888766654 334 455788888888888888888889999999999988876443          


Q ss_pred             hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccccc
Q 006752          404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN  483 (632)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  483 (632)
                                                                +..+++|++|+|++|++++.+|..|+++++|++|+|++
T Consensus       240 ------------------------------------------~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         240 ------------------------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             ------------------------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ------------------------------------------cccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence                                                      45567899999999999988999999999999999999


Q ss_pred             ccCCCcchhhhccCCCCcEEeecCce-eccC
Q 006752          484 ASLTDVSLHQLSSLSKLTNLSIRDAV-LTNS  513 (632)
Q Consensus       484 n~l~~~~~~~~~~l~~L~~L~ls~N~-l~~~  513 (632)
                      |+++|.+|. ++++++|+.+++++|+ +.|.
T Consensus       278 N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         278 NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             CcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            999987774 5788899999999987 4553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.2e-22  Score=200.93  Aligned_cols=264  Identities=18%  Similarity=0.211  Sum_probs=194.1

Q ss_pred             CcEEEccCCCCCCCCC--CCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752          214 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (632)
Q Consensus       214 L~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~  290 (632)
                      .+.++-++.+++.+|.  .+.+++|++++|+++.+++ .+..+++|++|++++|.+..+++. .+..++.|++|++++|+
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh-hhhCCCccCEecccCCc
Confidence            4455555556666553  2677788888888877776 355778888888888887776543 35577888888888888


Q ss_pred             CCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcc--hhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752          291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYAI  368 (632)
Q Consensus       291 l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (632)
                      ++.++. ...+.++.|++.+|.+.+.....+... ..+..++...|....  .....+ ..+++|+.+++++|.++.. +
T Consensus        91 l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~-~~~~~l~~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~l-~  166 (305)
T d1xkua_          91 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTI-P  166 (305)
T ss_dssp             CSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCSC-C
T ss_pred             cCcCcc-chhhhhhhhhccccchhhhhhhhhhcc-ccccccccccccccccCCCcccc-ccccccCccccccCCcccc-C
Confidence            776632 234577888888888877666655554 677778877765332  222233 5577888888888877643 2


Q ss_pred             HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhc
Q 006752          369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQN  448 (632)
Q Consensus       369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~  448 (632)
                      .  ..+++|+.|++++|.+.+..+.                                                   .+.+
T Consensus       167 ~--~~~~~L~~L~l~~n~~~~~~~~---------------------------------------------------~~~~  193 (305)
T d1xkua_         167 Q--GLPPSLTELHLDGNKITKVDAA---------------------------------------------------SLKG  193 (305)
T ss_dssp             S--SCCTTCSEEECTTSCCCEECTG---------------------------------------------------GGTT
T ss_pred             c--ccCCccCEEECCCCcCCCCChh---------------------------------------------------Hhhc
Confidence            1  2367888888888887776544                                                   5677


Q ss_pred             CCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC------CCC
Q 006752          449 LNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK------PPR  522 (632)
Q Consensus       449 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~------~~~  522 (632)
                      ++.+++|++++|.+++..+..+..+++|++|+|++|+|+. +|.+|..+++|++|++++|+|+.+....|.      ...
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             cccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccC
Confidence            8899999999999999888888899999999999999987 467889999999999999999987655554      357


Q ss_pred             CcceEecCCCcccC
Q 006752          523 SLKLLDLHGGWLLT  536 (632)
Q Consensus       523 ~L~~L~l~~N~l~~  536 (632)
                      +|+.|++++|++..
T Consensus       273 ~L~~L~L~~N~~~~  286 (305)
T d1xkua_         273 SYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCSEEECCSSSSCG
T ss_pred             CCCEEECCCCcCcc
Confidence            89999999999743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=6.2e-23  Score=202.93  Aligned_cols=279  Identities=18%  Similarity=0.230  Sum_probs=150.7

Q ss_pred             CccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEcc
Q 006752          141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (632)
Q Consensus       141 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  220 (632)
                      ..+.++-++..++.. |..+  .+++++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~l-P~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCcc-CCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344555555555532 2222  2456666666666665544456666677777777776666666666666666666666


Q ss_pred             CCCCCCCCC--CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----
Q 006752          221 WTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----  294 (632)
Q Consensus       221 ~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----  294 (632)
                      +|+++.++.  ...++.|++.+|.+..++..                        .+.....+..++...+.....    
T Consensus        88 ~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~------------------------~~~~~~~~~~l~~~~n~~~~~~~~~  143 (305)
T d1xkua_          88 KNQLKELPEKMPKTLQELRVHENEITKVRKS------------------------VFNGLNQMIVVELGTNPLKSSGIEN  143 (305)
T ss_dssp             SSCCSBCCSSCCTTCCEEECCSSCCCBBCHH------------------------HHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             CCccCcCccchhhhhhhhhccccchhhhhhh------------------------hhhccccccccccccccccccCCCc
Confidence            665555441  23444444444444433222                        122333444444444332221    


Q ss_pred             hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcC
Q 006752          295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  374 (632)
Q Consensus       295 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  374 (632)
                      ..+..+++|+.+++++|.+..                         ...    ..+++|++|++++|..++..+..+..+
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~-------------------------l~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~  194 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT-------------------------IPQ----GLPPSLTELHLDGNKITKVDAASLKGL  194 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-------------------------CCS----SCCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred             cccccccccCccccccCCccc-------------------------cCc----ccCCccCEEECCCCcCCCCChhHhhcc
Confidence            234444555555555554432                         110    124456666666665555555556666


Q ss_pred             CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccc
Q 006752          375 PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLER  454 (632)
Q Consensus       375 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~  454 (632)
                      +.+++|++++|.+.+..+.                                                   .+.++++|++
T Consensus       195 ~~l~~L~~s~n~l~~~~~~---------------------------------------------------~~~~l~~L~~  223 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNG---------------------------------------------------SLANTPHLRE  223 (305)
T ss_dssp             TTCCEEECCSSCCCEECTT---------------------------------------------------TGGGSTTCCE
T ss_pred             ccccccccccccccccccc---------------------------------------------------ccccccccee
Confidence            6666666666666655443                                                   3455666777


Q ss_pred             cccCccCCCCCccccccCcccccccccccccCCCcchhhh------ccCCCCcEEeecCceec--cCCCCCCCCCCCcce
Q 006752          455 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL------SSLSKLTNLSIRDAVLT--NSGLGSFKPPRSLKL  526 (632)
Q Consensus       455 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~ls~N~l~--~~~~~~l~~~~~L~~  526 (632)
                      |+|++|.++. +|.+|..+++|++|+|++|+|+.+....|      ...++|+.|++++|+++  ...|.+|.-+.....
T Consensus       224 L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         224 LHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             EECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             eecccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence            7777776665 45566666777777777777666543333      34566777777777664  334455544433333


Q ss_pred             E
Q 006752          527 L  527 (632)
Q Consensus       527 L  527 (632)
                      +
T Consensus       303 ~  303 (305)
T d1xkua_         303 V  303 (305)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.5e-23  Score=198.67  Aligned_cols=210  Identities=25%  Similarity=0.271  Sum_probs=167.1

Q ss_pred             CCccEEeccCCCCCchh-hhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752          279 SLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (632)
Q Consensus       279 ~~L~~L~ls~n~l~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  357 (632)
                      ..+.+++.+++.++.++ .+.  +++++|+|++|++++..+..+..+ ++|++|++++|+++....  + +.+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N~l~~l~~--~-~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQV--D-GTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEEC--C-SCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcc-cccccccccccccccccc--c-cccccccccc
Confidence            34445555555555542 221  467777777777776655566655 777777777777765432  1 4688999999


Q ss_pred             ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET  437 (632)
Q Consensus       358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  437 (632)
                      +++|++++. +..+..+++|+.|++++|.+.+..+.                                            
T Consensus        84 Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~--------------------------------------------  118 (266)
T d1p9ag_          84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG--------------------------------------------  118 (266)
T ss_dssp             CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS--------------------------------------------
T ss_pred             ccccccccc-ccccccccccccccccccccceeecc--------------------------------------------
Confidence            999988754 44577899999999999998876444                                            


Q ss_pred             ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCC
Q 006752          438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS  517 (632)
Q Consensus       438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  517 (632)
                             .+..+.++++|++++|.++...+..+..++.|+.+++++|++++..+..|..+++|++|+|++|+|+. +|..
T Consensus       119 -------~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~  190 (266)
T d1p9ag_         119 -------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG  190 (266)
T ss_dssp             -------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             -------ccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc-cChh
Confidence                   45677899999999999999888888899999999999999999988999999999999999999995 5777


Q ss_pred             CCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          518 FKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       518 l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      +..+++|+.|++++|++.|+|.+.++.++.
T Consensus       191 ~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl  220 (266)
T d1p9ag_         191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWL  220 (266)
T ss_dssp             TTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred             HCCCCCCCEEEecCCCCCCCcchHHHHHHH
Confidence            888999999999999999999887777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-22  Score=195.96  Aligned_cols=221  Identities=20%  Similarity=0.275  Sum_probs=169.5

Q ss_pred             EECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeecc-CCC
Q 006752          236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS-SSM  312 (632)
Q Consensus       236 L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~-~n~  312 (632)
                      ++.++++++.+|..+.  +++++|+|++|+++.+++. .+..++.|++|++++|.+..+  ..+..++.++.+... .+.
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHH-Hhhccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555555443  4556666666666655543 345666777777777776665  445566777777665 355


Q ss_pred             CCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccC
Q 006752          313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYP  392 (632)
Q Consensus       313 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~  392 (632)
                      +++..+..+..+ ++|++|++++|.+.......+ +.+++|+.+++++|++++..+..|+.+++|+.|++++|++++..+
T Consensus        93 ~~~l~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          93 LRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             CCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccchhhccc-ccCCEEecCCccccccccccc-chhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            665556666666 888889998888776555444 567889999999999988777888889999999999999987655


Q ss_pred             CCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccC
Q 006752          393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  472 (632)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  472 (632)
                      .                                                   +|.++++|+++++++|++++..|..|..
T Consensus       171 ~---------------------------------------------------~f~~l~~L~~l~l~~N~l~~i~~~~f~~  199 (284)
T d1ozna_         171 R---------------------------------------------------AFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (284)
T ss_dssp             T---------------------------------------------------TTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             h---------------------------------------------------hhccccccchhhhhhccccccChhHhhh
Confidence            4                                                   5678899999999999999988999999


Q ss_pred             cccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          473 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       473 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                      +++|++|++++|++.+..+.+|..+++|++|++++|++..
T Consensus       200 l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            9999999999999999999999999999999999998875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.5e-21  Score=182.74  Aligned_cols=200  Identities=16%  Similarity=0.191  Sum_probs=135.6

Q ss_pred             CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeecc
Q 006752          230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS  309 (632)
Q Consensus       230 l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~  309 (632)
                      ...+.+.+.+++.++.+|+.+.  +++++|+|++|.+++++.. .+..+++|++|++++|.++.++.+..+++|++|+++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHH-Hhhccccccccccccccccccccccccccccccccc
Confidence            3455566777777777766553  4667777777777665543 344566666666666666655545555566666666


Q ss_pred             CCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752          310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  389 (632)
Q Consensus       310 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~  389 (632)
                      +|++++                         ... . +..+++|+.|++++|.+.+..+..+..+.++++|++++|.+.+
T Consensus        86 ~N~l~~-------------------------~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          86 HNQLQS-------------------------LPL-L-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             SSCCSS-------------------------CCC-C-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             cccccc-------------------------ccc-c-cccccccccccccccccceeeccccccccccccccccccccce
Confidence            555542                         111 1 1346677777777777666555666677788888888888776


Q ss_pred             ccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc
Q 006752          390 MYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  469 (632)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  469 (632)
                      ..+.                                                   .+..+++|+.|++++|++++..+..
T Consensus       139 l~~~---------------------------------------------------~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_         139 LPPG---------------------------------------------------LLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             CCTT---------------------------------------------------TTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             eccc---------------------------------------------------cccccccchhcccccccccccCccc
Confidence            5443                                                   3556678888888888888877777


Q ss_pred             ccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          470 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       470 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      |..+++|++|+|++|+|+. +|..+..+++|+.|+|++|++.
T Consensus       168 ~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCC
Confidence            8888888888888888885 5666777888888888888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-17  Score=161.99  Aligned_cols=215  Identities=20%  Similarity=0.196  Sum_probs=135.9

Q ss_pred             CCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCC-CCCchHHHHHHhcCCCCc
Q 006752          253 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDDSVEMVACVGANLR  329 (632)
Q Consensus       253 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~  329 (632)
                      ..+|++|+++++.+........+..+++|++|++++|.++..  ..+..+++|++|++++| .+++.....+...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            345555555555544333222344566666666666665543  55667778888888775 577666666655558888


Q ss_pred             EEEccCC-cCcchhHH-HHHhcCCCCcEEEccCC--CCChHHHHHH-hcCCCccEEEccCCc-cccccCCCccchhhhhh
Q 006752          330 NLNLSNT-RFSSAGVG-ILAGHLPNLEILSLSGT--QIDDYAISYM-SMMPSLKFIDISNTD-IKGMYPSGQMNVFFSAY  403 (632)
Q Consensus       330 ~L~l~~n-~l~~~~~~-~~~~~~~~L~~L~L~~n--~l~~~~~~~l-~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~  403 (632)
                      +|++++| .+++.... .+...+++|+.|+++++  .+++.....+ ..+++|++|++++|. +++....          
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~----------  194 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----------  194 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----------
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh----------
Confidence            8888886 45554433 33344578888888875  4665544443 478888888888764 4433222          


Q ss_pred             hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc-CCCCCccccccCcccccccccc
Q 006752          404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLR  482 (632)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls  482 (632)
                                                               .+.++++|++|++++| .+++.....++++++|+.|+++
T Consensus       195 -----------------------------------------~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         195 -----------------------------------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             -----------------------------------------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             -----------------------------------------hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence                                                     4567788888888884 6777777777888888888888


Q ss_pred             cccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC
Q 006752          483 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  521 (632)
Q Consensus       483 ~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~  521 (632)
                      +|--.+..+.....+|+|+   +..+.++...+..++..
T Consensus       234 ~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         234 GIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK  269 (284)
T ss_dssp             TSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred             CCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence            8732222333334566654   56677777666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=3.6e-17  Score=164.44  Aligned_cols=312  Identities=20%  Similarity=0.204  Sum_probs=164.9

Q ss_pred             CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCC-CCCCE
Q 006752           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL-QNLSV  168 (632)
Q Consensus        90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~  168 (632)
                      .++++|+|+++. ++..+ +   ..++|++|++++| .++.. +.   ...+|++|++++|+++.     +..+ +.|++
T Consensus        38 ~~l~~LdLs~~~-L~~lp-~---~~~~L~~L~Ls~N-~l~~l-p~---~~~~L~~L~l~~n~l~~-----l~~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLP-E---LPPHLESLVASCN-SLTEL-PE---LPQSLKSLLVDNNNLKA-----LSDLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSC-CSCCC-S---CCTTCSEEECCSS-CCSSC-CC---CCTTCCEEECCSSCCSC-----CCSCCTTCCE
T ss_pred             cCCCEEEeCCCC-CCCCC-C---CCCCCCEEECCCC-CCccc-cc---chhhhhhhhhhhcccch-----hhhhcccccc
Confidence            367788888776 65422 1   2456777777776 45432 11   23466666666666553     1122 23555


Q ss_pred             EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-CCCCCCEEECCCCcccchh
Q 006752          169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCTIDSIL  247 (632)
Q Consensus       169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~l~~L~~L~L~~~~l~~~~  247 (632)
                      |++++|.+... | .++.+++|++|+++++.+                        ...+ ....+..+.+..+.... .
T Consensus       103 L~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~------------------------~~~~~~~~~l~~l~~~~~~~~~-~  155 (353)
T d1jl5a_         103 LGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSL------------------------KKLPDLPPSLEFIAAGNNQLEE-L  155 (353)
T ss_dssp             EECCSSCCSSC-C-CCTTCTTCCEEECCSSCC------------------------SCCCCCCTTCCEEECCSSCCSS-C
T ss_pred             ccccccccccc-c-chhhhccceeeccccccc------------------------cccccccccccchhhccccccc-c
Confidence            55555555432 1 234455555555555444                        3322 12344444444433322 1


Q ss_pred             ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCC
Q 006752          248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  327 (632)
Q Consensus       248 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  327 (632)
                      ..+..++.++.+.+.+|.....+..     ....+.+...++.+...+....++.|+.+++++|......     ....+
T Consensus       156 ~~l~~l~~l~~L~l~~n~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-----~~~~~  225 (353)
T d1jl5a_         156 PELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-----DLPPS  225 (353)
T ss_dssp             CCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-----SCCTT
T ss_pred             ccccccccceecccccccccccccc-----cccccccccccccccccccccccccccccccccccccccc-----ccccc
Confidence            2233445555555555544433221     1223344444444444444555666677777666554321     11145


Q ss_pred             CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcC-CCccEEEccCCccccccCCCccchhhhhhhhh
Q 006752          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM  406 (632)
Q Consensus       328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  406 (632)
                      +..+.+.++.+....     ...+.+...++..+.+.+     +..+ ......++..+.+.+.                
T Consensus       226 l~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~----------------  279 (353)
T d1jl5a_         226 LEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL----------------  279 (353)
T ss_dssp             CCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE----------------
T ss_pred             ccccccccccccccc-----cccccccccccccccccc-----cccccchhcccccccCccccc----------------
Confidence            666666666554321     123445555555544332     1111 2334444444444332                


Q ss_pred             hhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC
Q 006752          407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  486 (632)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  486 (632)
                                                             ...+++|++|+|++|+++. +|..   +++|+.|+|++|+|
T Consensus       280 ---------------------------------------~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~L  316 (353)
T d1jl5a_         280 ---------------------------------------CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHL  316 (353)
T ss_dssp             ---------------------------------------CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred             ---------------------------------------cccCCCCCEEECCCCccCc-cccc---cCCCCEEECCCCcC
Confidence                                                   1224688999999998886 4543   57888899999998


Q ss_pred             CCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752          487 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  530 (632)
Q Consensus       487 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~  530 (632)
                      +. +|.   .+++|++|++++|+++.. |..   +.+|+.|.+.
T Consensus       317 ~~-l~~---~~~~L~~L~L~~N~L~~l-p~~---~~~L~~L~~~  352 (353)
T d1jl5a_         317 AE-VPE---LPQNLKQLHVEYNPLREF-PDI---PESVEDLRMN  352 (353)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSSC-CCC---CTTCCEEECC
T ss_pred             Cc-ccc---ccCCCCEEECcCCcCCCC-Ccc---ccccCeeECc
Confidence            86 443   356789999999998763 543   3456666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=4.3e-18  Score=159.77  Aligned_cols=188  Identities=20%  Similarity=0.351  Sum_probs=123.1

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .+.+|+.|++.+|.++.+..+..+++|++|++++|.+++..+  +..+ ++++++++++|.++...  .+ ..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l-~~l~~l~~~~n~~~~i~--~l-~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLKNVS--AI-AGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCSCCG--GG-TTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--cccc-ccccccccccccccccc--cc-ccccccccc
Confidence            345566666666666655556666666666666666654432  3333 56666666666555432  12 346666666


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      +++++...+..  .+...+.++.+.++++.+...                                              
T Consensus       113 ~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~----------------------------------------------  144 (227)
T d1h6ua2         113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI----------------------------------------------  144 (227)
T ss_dssp             ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred             ccccccccccc--hhccccchhhhhchhhhhchh----------------------------------------------
Confidence            66666554422  244556666666666555432                                              


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  516 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  516 (632)
                             ..+.++++|+.|++++|.+++.  ..++++++|+.|+|++|++++..  .++++++|++|++++|++++..+ 
T Consensus       145 -------~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~-  212 (227)
T d1h6ua2         145 -------SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP-  212 (227)
T ss_dssp             -------GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG-
T ss_pred             -------hhhccccccccccccccccccc--hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc-
Confidence                   2356678888899988888764  33778888999999999888743  37888899999999998887543 


Q ss_pred             CCCCCCCcceEecCC
Q 006752          517 SFKPPRSLKLLDLHG  531 (632)
Q Consensus       517 ~l~~~~~L~~L~l~~  531 (632)
                       +.++++|+.|++++
T Consensus       213 -l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 -LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GTTCTTCCEEEEEE
T ss_pred             -cccCCCCCEEEeeC
Confidence             77888889888863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=5.1e-17  Score=163.29  Aligned_cols=298  Identities=17%  Similarity=0.190  Sum_probs=188.8

Q ss_pred             CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCC-CCCEEECCCCcc
Q 006752          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS-SLECLNLSNCTI  243 (632)
Q Consensus       165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~-~L~~L~L~~~~l  243 (632)
                      ++++|+++++.++. +|+   ..++|++|++++|+++.. |.   ...+|+.|++++|.++.++.++ .|++|++++|.+
T Consensus        39 ~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l  110 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL  110 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCccc-cc---chhhhhhhhhhhcccchhhhhcccccccccccccc
Confidence            46666666666654 332   245667777777766632 32   2356777777777777766654 588888888888


Q ss_pred             cchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHh
Q 006752          244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC  323 (632)
Q Consensus       244 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  323 (632)
                      ..+|. ...+++|+.|+++++.+...+.     ....+..+.+..+.......+..++.++.+.+.+|.......     
T Consensus       111 ~~lp~-~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~-----  179 (353)
T d1jl5a_         111 EKLPE-LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD-----  179 (353)
T ss_dssp             SSCCC-CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC-----
T ss_pred             ccccc-hhhhccceeecccccccccccc-----ccccccchhhccccccccccccccccceeccccccccccccc-----
Confidence            87764 4678888888888887766543     245677777777777666667778888888888887654221     


Q ss_pred             cCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhh
Q 006752          324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY  403 (632)
Q Consensus       324 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  403 (632)
                      .....+.+...++.+.....   ...++.|+.+++++|.....    .....++..+.+.++.+... +...        
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~---~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~~~-~~~~--------  243 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDL-PELP--------  243 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCSCC-CCCC--------
T ss_pred             cccccccccccccccccccc---cccccccccccccccccccc----cccccccccccccccccccc-cccc--------
Confidence            11345566666655443211   14578888888888876532    12456678888888877653 2211        


Q ss_pred             hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC-CcccccccCccCCCCCccccccCcccccccccc
Q 006752          404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDATLFPLSTFKELIHLSLR  482 (632)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  482 (632)
                                              ..+.......+.+.   .+..+ ......++..+.+.+.    ...+++|++|+|+
T Consensus       244 ------------------------~~l~~~~~~~~~~~---~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls  292 (353)
T d1jl5a_         244 ------------------------QSLTFLDVSENIFS---GLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVS  292 (353)
T ss_dssp             ------------------------TTCCEEECCSSCCS---EESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECC
T ss_pred             ------------------------cccccccccccccc---ccccccchhcccccccCccccc----cccCCCCCEEECC
Confidence                                    00111111111111   01111 2334455555555542    2346899999999


Q ss_pred             cccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752          483 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       483 ~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      +|+++. +|.   .+++|+.|++++|+|+.. |..   +++|++|++++|++..
T Consensus       293 ~N~l~~-lp~---~~~~L~~L~L~~N~L~~l-~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         293 NNKLIE-LPA---LPPRLERLIASFNHLAEV-PEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS
T ss_pred             CCccCc-ccc---ccCCCCEEECCCCcCCcc-ccc---cCCCCEEECcCCcCCC
Confidence            999997 443   367899999999999864 543   4689999999999743

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.2e-17  Score=160.14  Aligned_cols=199  Identities=23%  Similarity=0.314  Sum_probs=103.3

Q ss_pred             CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCC-CCChHHHHHH-hcCCCcc
Q 006752          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYM-SMMPSLK  378 (632)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l-~~~~~L~  378 (632)
                      .+|++|++++|.+++.....+...+++|++|++++|.+++..+..+ +.+++|++|++++| .+++.....+ ..+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3555555555555544444444334555555555555555555444 34555555555553 3544333322 3455555


Q ss_pred             EEEccCCc-cccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHh-hcCCcccccc
Q 006752          379 FIDISNTD-IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTAL-QNLNHLERLN  456 (632)
Q Consensus       379 ~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l-~~l~~L~~L~  456 (632)
                      +|++++|. ++.....                                                  ..+ ..+++|+.|+
T Consensus       125 ~L~ls~c~~~~~~~~~--------------------------------------------------~~~~~~~~~L~~L~  154 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQ--------------------------------------------------VAVAHVSETITQLN  154 (284)
T ss_dssp             EEECCCCTTCCHHHHH--------------------------------------------------HHHHHSCTTCCEEE
T ss_pred             ccccccccccccccch--------------------------------------------------hhhcccccccchhh
Confidence            55555542 2211000                                                  011 1234555555


Q ss_pred             cCcc--CCCCCccccc-cCcccccccccccc-cCCCcchhhhccCCCCcEEeecCc-eeccCCCCCCCCCCCcceEecCC
Q 006752          457 LEQT--QVSDATLFPL-STFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLLDLHG  531 (632)
Q Consensus       457 Ls~n--~l~~~~~~~l-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ls~N-~l~~~~~~~l~~~~~L~~L~l~~  531 (632)
                      ++++  .+++.....+ ..+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|++|++++
T Consensus       155 l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             hcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            5543  2333222222 23556666666654 355555555666666666666663 45555555566667777777777


Q ss_pred             CcccChHHHHHHHHHcCCeee
Q 006752          532 GWLLTEDAILQFCKMHPRIEV  552 (632)
Q Consensus       532 N~l~~~~~~~~~~~~~~~~~~  552 (632)
                      |  ..+.....+.+..|.+++
T Consensus       235 ~--~~d~~l~~l~~~lp~L~i  253 (284)
T d2astb2         235 I--VPDGTLQLLKEALPHLQI  253 (284)
T ss_dssp             S--SCTTCHHHHHHHSTTSEE
T ss_pred             C--CCHHHHHHHHHhCccccc
Confidence            7  355566666777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=6.7e-18  Score=153.73  Aligned_cols=142  Identities=16%  Similarity=0.217  Sum_probs=124.1

Q ss_pred             CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ  432 (632)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (632)
                      .++++.++++++. +|..+  .+++++|+|++|+|++.++..                                      
T Consensus        10 ~~~v~Cs~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~~~~~~--------------------------------------   48 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDG--------------------------------------   48 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSC--------------------------------------
T ss_pred             CCEEEEeCCCcCc-cCCCC--CCCCCEEEeCCCCCccccccc--------------------------------------
Confidence            4578888888774 34333  257999999999998765552                                      


Q ss_pred             cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752          433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  512 (632)
Q Consensus       433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (632)
                                  .|.++++|++|+|++|.+....+..|..+++|++|+|++|+|+++.+.+|.++++|++|+|++|+|++
T Consensus        49 ------------~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          49 ------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             ------------SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             ------------ccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc
Confidence                        57889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752          513 SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      +.+.+|..+++|++|++++|++.+.+...++..+.
T Consensus       117 i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l  151 (192)
T d1w8aa_         117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL  151 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             cCHHHhcCCcccccccccccccccccchHHHhhhh
Confidence            99999999999999999999998888877776654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=9e-17  Score=150.58  Aligned_cols=188  Identities=21%  Similarity=0.248  Sum_probs=105.2

Q ss_pred             ccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCC
Q 006752           87 GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL  166 (632)
Q Consensus        87 ~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  166 (632)
                      +.+.+|+.|++.+|. ++..  ..+.++++|++|++++| .+++.  ..+.++++|+++++++|.++..  ..+.++++|
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l--~~l~~l~~L~~L~ls~n-~i~~~--~~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTG-VTTI--EGVQYLNNLIGLELKDN-QITDL--APLKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSS-CCCCC--GGGTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             HHcCCcCEEECCCCC-CCcc--hhHhcCCCCcEeecCCc-eeecc--cccccccccccccccccccccc--ccccccccc
Confidence            445677777777776 6543  34667777777777777 45443  2356667777777777666542  235566666


Q ss_pred             CEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccch
Q 006752          167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI  246 (632)
Q Consensus       167 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~  246 (632)
                      +.++++++...+.  ..+...+.++.+.++.+.+....  .+..+++|++|+++                   +|.+...
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~-------------------~n~~~~~  166 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIG-------------------NAQVSDL  166 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECC-------------------SSCCCCC
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchhh--hhcccccccccccc-------------------ccccccc
Confidence            6666666655443  23445555666666555554322  23344444444444                   4443332


Q ss_pred             hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeecc
Q 006752          247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS  309 (632)
Q Consensus       247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~  309 (632)
                      +. +..+++|++|++++|++.++++   +..+++|++|++++|+++.++.+..+++|+.|+++
T Consensus       167 ~~-l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         167 TP-LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             hh-hcccccceecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            22 3445555555555555554432   33455666666666666655555666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.3e-17  Score=150.52  Aligned_cols=165  Identities=23%  Similarity=0.384  Sum_probs=92.3

Q ss_pred             cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (632)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  378 (632)
                      .+.+|++|++++|.+++..  .+..+ ++|++|++++|++++..+  + +.+++|++|++++|++++..  .+..+++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l-~~L~~L~L~~n~i~~l~~--~-~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--L-ANLKNLGWLFLDENKVKDLS--SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSSCCCCGG--GGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCCch--hHhhC-CCCCEEeCCCccccCccc--c-ccCccccccccccccccccc--ccccccccc
Confidence            3445555555555554322  12233 556666666665555332  1 44566666666666665422  355666666


Q ss_pred             EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752          379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE  458 (632)
Q Consensus       379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls  458 (632)
                      .|++++|.+...                                                     +.+..+++++.++++
T Consensus       116 ~L~l~~~~~~~~-----------------------------------------------------~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2         116 SLSLEHNGISDI-----------------------------------------------------NGLVHLPQLESLYLG  142 (210)
T ss_dssp             EEECTTSCCCCC-----------------------------------------------------GGGGGCTTCCEEECC
T ss_pred             cccccccccccc-----------------------------------------------------ccccccccccccccc
Confidence            666666655432                                                     124455666666666


Q ss_pred             ccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752          459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  530 (632)
Q Consensus       459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~  530 (632)
                      +|.+++.  ..+..+++|+++++++|++++..  .+.++++|++|++++|+++..  ..+..+++|++|+++
T Consensus       143 ~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             ccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence            6666542  33455666666666666666533  256666666666666666653  245666666666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.9e-17  Score=151.60  Aligned_cols=176  Identities=22%  Similarity=0.324  Sum_probs=98.3

Q ss_pred             eccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCC
Q 006752          285 DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID  364 (632)
Q Consensus       285 ~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  364 (632)
                      .++.+.+++......++++++|++++|.+++.  ..+..+ ++|++|++++|++++..+   ++.+++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l--~~l~~l-~nL~~L~Ls~N~l~~~~~---l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYL-NNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCCCCc--cccccC-CCcCcCccccccccCccc---ccCCcccccccccccccc
Confidence            34444444443334455566666666555532  123333 566666666666655433   245666666666666655


Q ss_pred             hHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchH
Q 006752          365 DYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT  444 (632)
Q Consensus       365 ~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  444 (632)
                      ...  .+++++.|+.|++++|.+...                                                     .
T Consensus        98 ~~~--~l~~l~~L~~L~l~~~~~~~~-----------------------------------------------------~  122 (199)
T d2omxa2          98 DIT--PLANLTNLTGLTLFNNQITDI-----------------------------------------------------D  122 (199)
T ss_dssp             CCG--GGTTCTTCSEEECCSSCCCCC-----------------------------------------------------G
T ss_pred             ccc--ccccccccccccccccccccc-----------------------------------------------------c
Confidence            432  255666666666666655543                                                     1


Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCc
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  524 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L  524 (632)
                      .+..+++|+.|++++|++...  ..+..+++|+.|++++|++++..  .++++++|++|++++|++++.  +.+..+++|
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L  196 (199)
T d2omxa2         123 PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNL  196 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCC
Confidence            234556666666666666542  34556666666666666666643  366666677777777666653  235555555


Q ss_pred             ceE
Q 006752          525 KLL  527 (632)
Q Consensus       525 ~~L  527 (632)
                      ++|
T Consensus       197 ~~L  199 (199)
T d2omxa2         197 ESL  199 (199)
T ss_dssp             SEE
T ss_pred             CcC
Confidence            554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.1e-16  Score=147.65  Aligned_cols=166  Identities=25%  Similarity=0.345  Sum_probs=136.2

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .+.+|++|++++|.++....+..+++|++|++++|++++..+  +..+ ++|++|++++|++++..  .+ ..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLS--SL-KDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGG--GG-TTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccC-ccccccccccccccccc--cc-ccccccccc
Confidence            356788889999988888778889999999999999887543  3444 88999999999988753  23 668999999


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      ++++|.+...  ..+..++.++.+++++|.+++..                                             
T Consensus       118 ~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~---------------------------------------------  150 (210)
T d1h6ta2         118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---------------------------------------------  150 (210)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG---------------------------------------------
T ss_pred             cccccccccc--ccccccccccccccccccccccc---------------------------------------------
Confidence            9999987653  34788999999999999987641                                             


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  507 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~  507 (632)
                              .+..+++|+++++++|++++..  .++++++|++|+|++|+++++ + .+.++++|++|+|++
T Consensus       151 --------~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         151 --------VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --------GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             --------cccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence                    3456789999999999998743  488899999999999999974 3 689999999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-16  Score=145.47  Aligned_cols=162  Identities=23%  Similarity=0.379  Sum_probs=132.3

Q ss_pred             cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (632)
Q Consensus       277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  356 (632)
                      .++++++|++++|.++.+..+..+++|++|++++|++++..+  +..+ ++|++|++++|.+.....  + +.+++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l-~~L~~L~l~~n~~~~~~~--l-~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--L-ANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--G-TTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCC-cccccccccccccccccc--c-ccccccccc
Confidence            457888888888888888778889999999999999887554  5555 889999999998876543  2 678999999


Q ss_pred             EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE  436 (632)
Q Consensus       357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  436 (632)
                      ++++|.+....  .+..+++|+.|++++|++... +                                            
T Consensus       112 ~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~--------------------------------------------  144 (199)
T d2omxa2         112 TLFNNQITDID--PLKNLTNLNRLELSSNTISDI-S--------------------------------------------  144 (199)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-G--------------------------------------------
T ss_pred             ccccccccccc--ccchhhhhHHhhhhhhhhccc-c--------------------------------------------
Confidence            99999877543  377899999999999988653 2                                            


Q ss_pred             cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEE
Q 006752          437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL  503 (632)
Q Consensus       437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  503 (632)
                              .+..+++|++|++++|++++.  ..++++++|++|++++|+++++.  .++++++|++|
T Consensus       145 --------~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         145 --------ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             --------GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             --------cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence                    356788999999999999884  34888999999999999999843  57889999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-17  Score=158.79  Aligned_cols=81  Identities=10%  Similarity=-0.022  Sum_probs=47.4

Q ss_pred             cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752          451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  530 (632)
Q Consensus       451 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~  530 (632)
                      .++.|++++|+++...+..+.....++.+++++|+++.+.+..|.++++|++|++++|+++...+..|.+++.|+.+++.
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            55666666666665444433332223333456666666555556666777777777777666555556666666666654


Q ss_pred             C
Q 006752          531 G  531 (632)
Q Consensus       531 ~  531 (632)
                      +
T Consensus       234 ~  234 (242)
T d1xwdc1         234 N  234 (242)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=5.6e-15  Score=147.59  Aligned_cols=94  Identities=23%  Similarity=0.321  Sum_probs=61.9

Q ss_pred             hhcCCCCCeeeccCCCCCchHHHHHHh---cCCCCcEEEccCCcCcchhHHHHHh-----cCCCCcEEEccCCCCChHHH
Q 006752          297 LTQMKALEHLDLSSSMIGDDSVEMVAC---VGANLRNLNLSNTRFSSAGVGILAG-----HLPNLEILSLSGTQIDDYAI  368 (632)
Q Consensus       297 l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~  368 (632)
                      +..+++|+.|++++|.+++.....+..   .+++|++|++++|.+++.....++.     ..+.|++|++++|++++...
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            455677777777777776554433321   2267777888777777765555432     23568888888888876544


Q ss_pred             HHHh-----cCCCccEEEccCCccccc
Q 006752          369 SYMS-----MMPSLKFIDISNTDIKGM  390 (632)
Q Consensus       369 ~~l~-----~~~~L~~L~Ls~n~i~~~  390 (632)
                      ..+.     ++++|++|++++|++...
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            4332     577888888888888653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=5.5e-16  Score=155.10  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             hhcCCcccccccCccCCCCCc----cccccCcccccccccccccCCCcchhhh----c--cCCCCcEEeecCceeccCCC
Q 006752          446 LQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVSLHQL----S--SLSKLTNLSIRDAVLTNSGL  515 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~--~l~~L~~L~ls~N~l~~~~~  515 (632)
                      +..+++|+.|+|++|.++...    ...+..+++|++|+|++|.|++.....+    .  ..+.|++|++++|+|+....
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            344555666666666554432    2233445666666666666655433332    2  23456777777776654322


Q ss_pred             CC----CC-CCCCcceEecCCCcccC
Q 006752          516 GS----FK-PPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       516 ~~----l~-~~~~L~~L~l~~N~l~~  536 (632)
                      ..    +. +.+.|++|++++|.+..
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHHccCCCCCEEECCCCcCCC
Confidence            22    21 34567777777777633

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-17  Score=154.55  Aligned_cols=220  Identities=10%  Similarity=0.051  Sum_probs=165.2

Q ss_pred             CCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch---hhhhcCCCCCeeecc
Q 006752          233 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLS  309 (632)
Q Consensus       233 L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~  309 (632)
                      .+.++.++..++.+|..+.  +++++|++++|.++.++.. .|.++++|++|++++|.+...   ..+..++.++++.+.
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChh-Hhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            3678888888888887764  5899999999999887654 466889999999999988654   457788899999886


Q ss_pred             C-CCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCC-CccEEEccCCcc
Q 006752          310 S-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDI  387 (632)
Q Consensus       310 ~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~Ls~n~i  387 (632)
                      . |.+....+..+..+ ++|+++++++|++.......+...++.+..+...++.+....+..+..++ .++.|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            5 56766666666666 89999999999887654433334455666666677777766556666554 788899999888


Q ss_pred             ccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcc
Q 006752          388 KGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  467 (632)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~  467 (632)
                      +...+.                                                   .+.....++.+++++|+++...+
T Consensus       166 ~~i~~~---------------------------------------------------~~~~~~l~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         166 QEIHNC---------------------------------------------------AFNGTQLDELNLSDNNNLEELPN  194 (242)
T ss_dssp             CEECTT---------------------------------------------------TTTTCCEEEEECTTCTTCCCCCT
T ss_pred             cccccc---------------------------------------------------cccchhhhccccccccccccccH
Confidence            865333                                                   22222333445678889998666


Q ss_pred             ccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752          468 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  507 (632)
Q Consensus       468 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~  507 (632)
                      ..|.++++|++|+|++|+|+...+..|.++++|+.+++.+
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            7789999999999999999987777888888888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.6e-17  Score=151.13  Aligned_cols=175  Identities=16%  Similarity=0.162  Sum_probs=129.4

Q ss_pred             CCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEc
Q 006752          303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI  382 (632)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L  382 (632)
                      .+.++.++++++. +|..   ..+.+++|+|++|+++.......++.+++|++|++++|.+....+..+..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~---lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRD---IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSS-CCSC---CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcCc-cCCC---CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3466777776664 3322   22678888888888876444444467889999999999888888888888899999999


Q ss_pred             cCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCC
Q 006752          383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV  462 (632)
Q Consensus       383 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l  462 (632)
                      ++|++++..|.                                                   +|.++++|++|+|++|+|
T Consensus        86 s~N~l~~l~~~---------------------------------------------------~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          86 GENKIKEISNK---------------------------------------------------MFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             CSCCCCEECSS---------------------------------------------------SSTTCTTCCEEECCSSCC
T ss_pred             ccccccccCHH---------------------------------------------------HHhCCCcccccccCCccc
Confidence            99998886555                                                   467788999999999999


Q ss_pred             CCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752          463 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  536 (632)
Q Consensus       463 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~  536 (632)
                      ++..+.+|..+++|++|+|++|.+.......+ -...++.+.+..+.++...|..+   ..++.++++.|.+.|
T Consensus       115 ~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred             cccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcC
Confidence            98888888889999999999998876432211 12345666777787776666554   456778888888866

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=7.9e-14  Score=115.85  Aligned_cols=102  Identities=23%  Similarity=0.327  Sum_probs=83.9

Q ss_pred             hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCC-CCCCCCCCCc
Q 006752          446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSL  524 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~l~~~~~L  524 (632)
                      +..+++|++|++++|.+++ +|..++.+++|++|++++|+|++. | .+..+++|++|++++|+++... +..+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            5678899999999999987 677899999999999999999985 3 5899999999999999999864 3568889999


Q ss_pred             ceEecCCCcccChH-HHHHHHHHcCCe
Q 006752          525 KLLDLHGGWLLTED-AILQFCKMHPRI  550 (632)
Q Consensus       525 ~~L~l~~N~l~~~~-~~~~~~~~~~~~  550 (632)
                      ++|++++|++.... ....+....|.+
T Consensus        93 ~~L~l~~N~i~~~~~~~~~l~~~lp~L  119 (124)
T d1dcea3          93 VLLNLQGNSLCQEEGIQERLAEMLPSV  119 (124)
T ss_dssp             CEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CEEECCCCcCCcCccHHHHHHHHCcCc
Confidence            99999999983322 234445555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.9e-13  Score=118.62  Aligned_cols=101  Identities=21%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             hhcCCcccccccCcc-CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCc
Q 006752          446 LQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  524 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L  524 (632)
                      +.++++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|++|+|+...+..|... .|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cc
Confidence            556789999999876 5998888889999999999999999999999999999999999999999998877777655 79


Q ss_pred             ceEecCCCcccChHHHHHHHHHc
Q 006752          525 KLLDLHGGWLLTEDAILQFCKMH  547 (632)
Q Consensus       525 ~~L~l~~N~l~~~~~~~~~~~~~  547 (632)
                      +.|+|++|++.|+|...++..+.
T Consensus       106 ~~L~L~~Np~~C~C~~~~l~~~~  128 (156)
T d2ifga3         106 QELVLSGNPLHCSCALRWLQRWE  128 (156)
T ss_dssp             CEEECCSSCCCCCGGGHHHHHHH
T ss_pred             cccccCCCcccCCchHHHHHHHH
Confidence            99999999999999888877765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-13  Score=120.45  Aligned_cols=127  Identities=14%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  331 (632)
Q Consensus       252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  331 (632)
                      ++.++++|++++|+++.++..  +..+++|+.|++++|.++.++.+..+++|++|++++|+++...+..+..+ ++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~--~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l-~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQAL-PDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCG--GGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHC-TTCCEE
T ss_pred             CcCcCcEEECCCCCCCccCcc--ccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccc-cccccc
Confidence            455566666666666665432  23566777777777777766667777777777777777776554444444 778888


Q ss_pred             EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH---HHHHhcCCCccEEE
Q 006752          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA---ISYMSMMPSLKFID  381 (632)
Q Consensus       332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~~~~L~~L~  381 (632)
                      ++++|++++...-.....+++|++|++++|+++...   +..++.+++|++||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888887765432122256788888888888765432   34567788888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.3e-13  Score=116.53  Aligned_cols=122  Identities=16%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             cCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC---CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEE
Q 006752          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKIS  260 (632)
Q Consensus       185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~  260 (632)
                      .++.++++|+|++|+|+.. +..+..+++|+.|++++|.++.   ++.+++|++|++++|.++.+++.++ .+++|++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3444555555555555543 2333445555555555555543   3345666666677776666655443 466666666


Q ss_pred             eeCCCCCchhhhhhhhcCCCccEEeccCCCCCchh-----hhhcCCCCCeee
Q 006752          261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-----FLTQMKALEHLD  307 (632)
Q Consensus       261 l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-----~l~~~~~L~~L~  307 (632)
                      +++|.+..++....+..+++|++|++++|.++..+     .+..+|+|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666665544333445555555555555544331     234445555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.5e-12  Score=107.90  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             EEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCC
Q 006752          235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIG  314 (632)
Q Consensus       235 ~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~  314 (632)
                      .|++++|+++.++ .+..+++|++|++++|.+..+|+.  +..+++|+.|++++|.++.++.+..+++|++|++++|+++
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~--~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhh--hhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            4555555555443 244555555555555555554432  2345555555555555555555555666666666666655


Q ss_pred             chH-HHHHHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCCcEE
Q 006752          315 DDS-VEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEIL  356 (632)
Q Consensus       315 ~~~-~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L  356 (632)
                      +.. +..+..+ ++|+.|++++|++++..  ...+...+|+|+.|
T Consensus        79 ~~~~~~~l~~~-~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGC-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCC-CCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            432 1223333 55566666655554321  22222445555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.9e-13  Score=123.94  Aligned_cols=62  Identities=24%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             CcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeecCceeccC
Q 006752          450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNS  513 (632)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~  513 (632)
                      ++|++|++++|+++..  ..+..+++|++|++++|+|++... ..+..+++|+.|++++|++...
T Consensus        93 ~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          93 DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            4566666666666652  235556666666666666665332 3456666666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1.4e-12  Score=117.98  Aligned_cols=133  Identities=20%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             ccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhh-hhcCCCCCeeeccCCCCCchHHHHH
Q 006752          243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF-LTQMKALEHLDLSSSMIGDDSVEMV  321 (632)
Q Consensus       243 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~  321 (632)
                      +..++..+..+++|++|++++|.+..++.   +..+++|++|++++|.++.++. ...+++|++|++++|.+++.  ..+
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~---l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCCC---HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCccc---ccCCccccChhhccccccccccccccccccccccccccccccc--ccc
Confidence            33445555566666677776666665532   3356677777777776666532 33345677888888777753  234


Q ss_pred             HhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH----------HHHhcCCCccEEE
Q 006752          322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI----------SYMSMMPSLKFID  381 (632)
Q Consensus       322 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----------~~l~~~~~L~~L~  381 (632)
                      ..+ ++|++|++++|++++...-..++.+++|++|++++|++....+          ..+..+++|+.||
T Consensus       112 ~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccc-ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            555 7788888888877765432223667888888888887654322          2256788888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.6e-11  Score=102.24  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752          445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  511 (632)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (632)
                      +|.++++|+.|++++|+|+.+.+.+|..+++|++|+|++|+|+.+.+..|... +|+.|+|++|++.
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             hhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            46667778888888887777777777777788888888888777555555543 5778888877664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.37  E-value=9.5e-07  Score=76.43  Aligned_cols=84  Identities=12%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             CcccEEeccCCCCCCHH----HHHHhccCCCccEEEcCCCCCCCchhHHhh----hCCCCcCEEeccCCCCCChhhHhhh
Q 006752           65 HNAEAIELRGENSVDAE----WMAYLGAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDAGMKHL  136 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~~~l~~~~~~~l  136 (632)
                      +.+++|+|++++.++..    +...+...+.|++|+|++|. +++.....+    ...+.|++|+|++| .+++.+...+
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l   92 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARL   92 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHH
Confidence            55666666654334432    22334455566666666665 554433332    23455666666665 4555444332


Q ss_pred             ----cCCCCccEEEccCC
Q 006752          137 ----LSISTLEKLWLSET  150 (632)
Q Consensus       137 ----~~l~~L~~L~L~~n  150 (632)
                          ...+.|++|++++|
T Consensus        93 ~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCC
Confidence                23444555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.37  E-value=1.5e-06  Score=75.20  Aligned_cols=118  Identities=12%  Similarity=0.141  Sum_probs=90.3

Q ss_pred             HHHHhccCCCccEEEcCCCCCCCchhHH----hhhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCCCCC
Q 006752           82 WMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGLT  153 (632)
Q Consensus        82 ~~~~~~~~~~L~~L~L~~~~~i~~~~~~----~l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n~i~  153 (632)
                      +.....+.+.|++|+|++++.++.....    ++...+.|++|+|++| .+++.+...++    ..+.|++|+|++|.++
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3444567799999999986557776544    4557889999999999 78877665554    5789999999999999


Q ss_pred             HhHH----HHhcCCCCCCEEEcCCCCCC---hH----HHHhccCCCCccEEEecCCCC
Q 006752          154 ADGI----ALLSSLQNLSVLDLGGLPVT---DL----VLRSLQVLTKLEYLDLWGSQV  200 (632)
Q Consensus       154 ~~~~----~~~~~l~~L~~L~L~~n~i~---~~----~~~~l~~l~~L~~L~L~~n~l  200 (632)
                      ....    ..+...+.|++|++++|.+.   ..    +...+...++|+.|+++.+..
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            8654    35667889999999988643   22    344556679999999987643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.7e-08  Score=82.75  Aligned_cols=83  Identities=19%  Similarity=0.090  Sum_probs=55.6

Q ss_pred             hhcCCcccccccCccCCCCCc--cccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCC------
Q 006752          446 LQNLNHLERLNLEQTQVSDAT--LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS------  517 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~------  517 (632)
                      +..+++|++|+|++|+|++..  +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++.......      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            456788888888888887743  244566788888888888888765544445556777888887776543321      


Q ss_pred             -CCCCCCcceEe
Q 006752          518 -FKPPRSLKLLD  528 (632)
Q Consensus       518 -l~~~~~L~~L~  528 (632)
                       +..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence             33456666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.4e-07  Score=79.91  Aligned_cols=94  Identities=20%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHH
Q 006752          366 YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA  445 (632)
Q Consensus       366 ~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  445 (632)
                      .....+..+++|++|++++|+|+...+..                                                 ..
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~-------------------------------------------------~~   86 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMS-------------------------------------------------SI   86 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGG-------------------------------------------------TH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhH-------------------------------------------------HH
Confidence            33444567888999999999888753211                                                 25


Q ss_pred             hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-------hhhccCCCCcEEeecCcee
Q 006752          446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-------HQLSSLSKLTNLSIRDAVL  510 (632)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~ls~N~l  510 (632)
                      +..+++|+.|+|++|.|++..+-.+.....|+.|++++|.+.+...       ..+..+|+|+.||  +..+
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence            6778899999999999988544344445678999999998876433       2366789999886  4444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.11  E-value=7.4e-06  Score=70.58  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=26.1

Q ss_pred             CcccEEeccCCCCCCHH----HHHHhccCCCccEEEcCCCCCCCchhHHhh----hCCCCcCEEeccCC
Q 006752           65 HNAEAIELRGENSVDAE----WMAYLGAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRC  125 (632)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~  125 (632)
                      +.+++|+|++++.++..    +...+...++|++|++++|. +++.....+    ...+.++++++++|
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccc
Confidence            44555555543233322    22223344555555555554 444333322    23444555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.02  E-value=1.6e-05  Score=68.36  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=75.9

Q ss_pred             cCCCccEEeccC-CCCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHHH
Q 006752          277 ETSLLSFLDVSN-SSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGIL  346 (632)
Q Consensus       277 ~~~~L~~L~ls~-n~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~  346 (632)
                      +.+.|++|++++ +.++..      .++...++|++|++++|.+++.....++..   .+.++.+++++|.+.+.....+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            446666666665 334332      455677888999999988887665544332   2789999999998887766555


Q ss_pred             H---hcCCCCcEEEc--cCCCCChHHH----HHHhcCCCccEEEccCCcc
Q 006752          347 A---GHLPNLEILSL--SGTQIDDYAI----SYMSMMPSLKFIDISNTDI  387 (632)
Q Consensus       347 ~---~~~~~L~~L~L--~~n~l~~~~~----~~l~~~~~L~~L~Ls~n~i  387 (632)
                      +   ...++|+.++|  ++|.+.+...    ..+..+++|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4   44577887665  4577876443    3455788999999987654